AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386980 MtrunA17_Chr3g0128761 92.746 193 14 0 17 209 10 202 6.22e-118 333
Msa1386980 MtrunA17_Chr1g0213011 32.227 211 131 5 6 208 8 214 3.54e-21 87.4
Msa1386980 MtrunA17_Chr1g0213031 28.019 207 139 4 6 205 11 214 2.72e-19 82.4
Msa1386980 MtrunA17_Chr1g0213021 29.048 210 137 6 6 207 11 216 1.04e-18 80.9
Msa1386980 MtrunA17_Chr1g0213051 27.907 215 144 6 1 205 1 214 5.64e-18 79.0
Msa1386980 MtrunA17_Chr1g0213041 28.293 205 139 5 8 205 11 214 6.98e-17 75.9
Msa1386980 MtrunA17_Chr2g0313901 28.000 200 133 6 10 207 86 276 3.57e-16 75.1
Msa1386980 MtrunA17_Chr7g0224381 28.758 153 102 3 1 146 1 153 1.33e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386980 AT5G05270.1 63.158 209 76 1 1 208 1 209 2.54e-84 249
Msa1386980 AT5G05270.2 63.158 209 76 1 1 208 1 209 2.54e-84 249
Msa1386980 AT3G55120.1 30.374 214 129 8 8 209 21 226 6.91e-17 77.0
Msa1386980 AT1G53520.1 26.344 186 131 4 23 207 106 286 1.24e-15 73.9
Msa1386980 AT5G66230.2 29.108 213 125 8 8 209 11 208 6.81e-15 73.2
Msa1386980 AT5G66220.1 29.032 155 102 3 59 209 9 159 1.59e-13 66.2

Find 78 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTCAATTGGGGTTTATT+TGG 0.127513 tig0020873:-34614 Msa1386980:CDS
AGAATTTCACTTGGAGAAAA+TGG 0.134571 tig0020873:+34635 None:intergenic
TTCTTTGACGCTCTCATTTC+TGG 0.168815 tig0020873:-34520 Msa1386980:intron
TGTTGTGATTAAAGAGATTA+AGG 0.213746 tig0020873:-34271 Msa1386980:CDS
TCCTTCAACCATTACATCTT+TGG 0.255062 tig0020873:-33660 Msa1386980:CDS
ATTGCTTAGGTTGTTATATA+AGG 0.261912 tig0020873:+35454 None:intergenic
AATAAATTGTTATTCTTTGT+TGG 0.283400 tig0020873:-33452 Msa1386980:three_prime_UTR
CAAGTGAAATTCTATTCAAT+TGG 0.286514 tig0020873:-34625 Msa1386980:CDS
AATACAGATTGTGGTATCTT+TGG 0.300414 tig0020873:-33774 Msa1386980:intron
TGCAAGTGGCTTGCTACTTC+AGG 0.308776 tig0020873:+34589 None:intergenic
CACACTCCGTAGCTAAATTA+AGG 0.334675 tig0020873:+35489 None:intergenic
AAGTGAAATTCTATTCAATT+GGG 0.340514 tig0020873:-34624 Msa1386980:CDS
AGTGGCTAGTGAAACTGTTT+TGG 0.373529 tig0020873:-35212 Msa1386980:CDS
CATTGCACGTGTGGAATCTA+TGG 0.382464 tig0020873:+33423 None:intergenic
GAGATTAAGGGTGCACAATA+TGG 0.383753 tig0020873:-34258 Msa1386980:CDS
GGATGAAGAAGAAGAAGCTT+TGG 0.390087 tig0020873:-34181 Msa1386980:CDS
GACTTTCTCCACTTTGTTTG+CGG 0.390887 tig0020873:-33541 Msa1386980:three_prime_UTR
AGCTCTTACTAGTTAGTTGC+TGG 0.395872 tig0020873:+35339 None:intergenic
TTGTCTTCCAACTCCTTGGC+AGG 0.403272 tig0020873:+34550 None:intergenic
TCTGCAGTTGGAGAGTTTGC+TGG 0.409543 tig0020873:+34093 None:intergenic
ATTAAGAAATGGTATCTTGC+TGG 0.410454 tig0020873:-33698 Msa1386980:CDS
ACCAAGGAGAGAAAGGGTTT+TGG 0.417350 tig0020873:+35153 None:intergenic
GACCGCTGTGAGGGACCGTT+TGG 0.422176 tig0020873:-34223 Msa1386980:CDS
ACCAAAACCCTTTCTCTCCT+TGG 0.424712 tig0020873:-35154 Msa1386980:CDS
TTGGTAGTAGTGATCTTTGA+AGG 0.439710 tig0020873:+35172 None:intergenic
TGCTACTTTACCTCTGCAGT+TGG 0.445412 tig0020873:+34081 None:intergenic
GTTGTGATTAAAGAGATTAA+GGG 0.453545 tig0020873:-34270 Msa1386980:CDS
TAGAGAGAATTGTGGTGAGA+TGG 0.457933 tig0020873:+35390 None:intergenic
TTCATCCTCATATTTGTCAT+CGG 0.460901 tig0020873:+34197 None:intergenic
ATCATTGTCTTCCAACTCCT+TGG 0.461782 tig0020873:+34546 None:intergenic
GTTTCTTGAAGTACTTAGAC+TGG 0.476418 tig0020873:+34139 None:intergenic
TAGTGGAGACTATTAAGAAA+TGG 0.482123 tig0020873:-33709 Msa1386980:CDS
TACCATGACCAAGGAGAGAA+AGG 0.488761 tig0020873:+35146 None:intergenic
CTGCAGTTGGAGAGTTTGCT+GGG 0.497551 tig0020873:+34094 None:intergenic
CTTAATAGTCTCCACTACAT+TGG 0.499125 tig0020873:+33715 None:intergenic
GCCAAAGATGTAATGGTTGA+AGG 0.506201 tig0020873:+33659 None:intergenic
CTTAAGATGAGATGTAAGAA+TGG 0.508372 tig0020873:+35426 None:intergenic
TGGATAATTCCTCTGAGAGA+TGG 0.511898 tig0020873:+33633 None:intergenic
CAATTGAATAGAATTTCACT+TGG 0.511986 tig0020873:+34626 None:intergenic
AAAGTTTGCCATTGCACGTG+TGG 0.515900 tig0020873:+33414 None:intergenic
AAGAATGGTAGATATTGCTT+AGG 0.517256 tig0020873:+35441 None:intergenic
AGTCTAATTGCCTTCTCCAC+AGG 0.518956 tig0020873:+34294 None:intergenic
ACTTGTGACTTTCTTTCAAG+TGG 0.521102 tig0020873:+35535 None:intergenic
CAGATTGTGGTATCTTTGGA+AGG 0.521938 tig0020873:-33770 Msa1386980:CDS
TACCTTTCCACTGTTGCAAG+TGG 0.522349 tig0020873:+34575 None:intergenic
ATGTGCAGCTCCTGTGGAGA+AGG 0.525875 tig0020873:-34304 Msa1386980:intron
AGAGGAAGTAGAGAGAATTG+TGG 0.528018 tig0020873:+35382 None:intergenic
ATGGGTAGCCAAAGATGTAA+TGG 0.528630 tig0020873:+33652 None:intergenic
GGATAATTCCTCTGAGAGAT+GGG 0.538139 tig0020873:+33634 None:intergenic
ACCATGACCAAGGAGAGAAA+GGG 0.540135 tig0020873:+35147 None:intergenic
ACCCTTTCTCTCCTTGGTCA+TGG 0.540415 tig0020873:-35148 Msa1386980:intron
GTGAATATGTGCAGCTCCTG+TGG 0.541590 tig0020873:-34310 Msa1386980:intron
AATGGTATCTTGCTGGCTCA+AGG 0.546466 tig0020873:-33691 Msa1386980:CDS
CTACCACCTTAATTTAGCTA+CGG 0.556695 tig0020873:-35495 Msa1386980:five_prime_UTR
CATAGATTCCACACGTGCAA+TGG 0.557143 tig0020873:-33422 Msa1386980:three_prime_UTR
ATTTGTCATCGGCTGCCAAA+CGG 0.557673 tig0020873:+34208 None:intergenic
AGTGAAATTCTATTCAATTG+GGG 0.558547 tig0020873:-34623 Msa1386980:CDS
TGGTAGTAGTGATCTTTGAA+GGG 0.566326 tig0020873:+35173 None:intergenic
ATGGTATCTTGCTGGCTCAA+GGG 0.567607 tig0020873:-33690 Msa1386980:CDS
AGGTAAGCCTGCCAAGGAGT+TGG 0.569479 tig0020873:-34557 Msa1386980:CDS
TAGCAAGCCACTTGCAACAG+TGG 0.573061 tig0020873:-34582 Msa1386980:CDS
GGCAGCCGATGACAAATATG+AGG 0.581635 tig0020873:-34202 Msa1386980:CDS
CGTAGCTAAATTAAGGTGGT+AGG 0.585339 tig0020873:+35496 None:intergenic
GCAGAATTCCGCAAACAAAG+TGG 0.588511 tig0020873:+33533 None:intergenic
TTTGATAGGGATTACCGACA+TGG 0.591441 tig0020873:-34662 Msa1386980:intron
ATCGATGTAGATAGAGACAG+AGG 0.592514 tig0020873:+35364 None:intergenic
AGCCACTTGCAACAGTGGAA+AGG 0.600159 tig0020873:-34577 Msa1386980:CDS
AGATTGTGGTATCTTTGGAA+GGG 0.601655 tig0020873:-33769 Msa1386980:CDS
AATAGAGAATGCCAATGTAG+TGG 0.611713 tig0020873:-33726 Msa1386980:CDS
GTGGAAAGGTAAGCCTGCCA+AGG 0.623835 tig0020873:-34563 Msa1386980:CDS
GAGAAAATGGATCTCCATGT+CGG 0.629435 tig0020873:+34648 None:intergenic
TCAGATTGAGACCGCTGTGA+GGG 0.629678 tig0020873:-34232 Msa1386980:CDS
AGCAAACTCTCCAACTGCAG+AGG 0.645259 tig0020873:-34091 Msa1386980:intron
TGCCAAACGGTCCCTCACAG+CGG 0.689378 tig0020873:+34221 None:intergenic
TTTGGCTACCCATCTCTCAG+AGG 0.689828 tig0020873:-33642 Msa1386980:CDS
TTCAGATTGAGACCGCTGTG+AGG 0.696200 tig0020873:-34233 Msa1386980:CDS
ACTCCGTAGCTAAATTAAGG+TGG 0.699822 tig0020873:+35492 None:intergenic
GTAGCAACTTACCATGACCA+AGG 0.712424 tig0020873:+35137 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTTTAATAATAATGT+TGG + tig0020873:33442-33461 None:intergenic 10.0%
!! AGTAAAAAAAAAAATTAAGT+TGG + tig0020873:35067-35086 None:intergenic 10.0%
!!! TTTTTGTTTAATAATAATGT+TGG + tig0020873:33442-33461 None:intergenic 10.0%
!! AGTAAAAAAAAAAATTAAGT+TGG + tig0020873:35067-35086 None:intergenic 10.0%
!! CAACATTTATGATATAATTA+AGG + tig0020873:34641-34660 None:intergenic 15.0%
!!! AATTAGTTTAAGTTGATTTT+AGG - tig0020873:34994-35013 Msa1386980:intron 15.0%
!!! AAAAAAATTAAGTTGGTTAT+AGG + tig0020873:35060-35079 None:intergenic 15.0%
!!! AATTCTGCTTTTTAATTTAT+TGG - tig0020873:35487-35506 Msa1386980:five_prime_UTR 15.0%
!!! AATAAATTGTTATTCTTTGT+TGG - tig0020873:35553-35572 Msa1386980:five_prime_UTR 15.0%
!! CAACATTTATGATATAATTA+AGG + tig0020873:34641-34660 None:intergenic 15.0%
!!! AATTAGTTTAAGTTGATTTT+AGG - tig0020873:34994-35013 Msa1386980:intron 15.0%
!!! AAAAAAATTAAGTTGGTTAT+AGG + tig0020873:35060-35079 None:intergenic 15.0%
!!! AATTCTGCTTTTTAATTTAT+TGG - tig0020873:35487-35506 Msa1386980:five_prime_UTR 15.0%
!!! AATAAATTGTTATTCTTTGT+TGG - tig0020873:35553-35572 Msa1386980:five_prime_UTR 15.0%
!! TCAAATCAAGAAAAAGAATT+TGG + tig0020873:33922-33941 None:intergenic 20.0%
!!! TCTTGATTTGATTTTGAATA+TGG - tig0020873:33931-33950 Msa1386980:intron 20.0%
!!! CTTGATTTGATTTTGAATAT+GGG - tig0020873:33932-33951 Msa1386980:intron 20.0%
!!! TTGATTTGATTTTGAATATG+GGG - tig0020873:33933-33952 Msa1386980:intron 20.0%
!!! AGAATTTTTCAAGAAATAGT+TGG - tig0020873:34001-34020 Msa1386980:intron 20.0%
!!! AATAGTTGGCAAATTTTAAT+TGG - tig0020873:34015-34034 Msa1386980:intron 20.0%
!! AAGTGAAATTCTATTCAATT+GGG - tig0020873:34381-34400 Msa1386980:intron 20.0%
!!! AACTAATTCTAAGAATGAAT+AGG + tig0020873:34982-35001 None:intergenic 20.0%
!! TTGTTAATATTAGTTGAAGT+TGG + tig0020873:35170-35189 None:intergenic 20.0%
!! TCAAATCAAGAAAAAGAATT+TGG + tig0020873:33922-33941 None:intergenic 20.0%
!!! TCTTGATTTGATTTTGAATA+TGG - tig0020873:33931-33950 Msa1386980:intron 20.0%
!!! CTTGATTTGATTTTGAATAT+GGG - tig0020873:33932-33951 Msa1386980:intron 20.0%
!!! TTGATTTGATTTTGAATATG+GGG - tig0020873:33933-33952 Msa1386980:intron 20.0%
!!! AGAATTTTTCAAGAAATAGT+TGG - tig0020873:34001-34020 Msa1386980:intron 20.0%
!!! AATAGTTGGCAAATTTTAAT+TGG - tig0020873:34015-34034 Msa1386980:intron 20.0%
!! AAGTGAAATTCTATTCAATT+GGG - tig0020873:34381-34400 Msa1386980:intron 20.0%
!!! AACTAATTCTAAGAATGAAT+AGG + tig0020873:34982-35001 None:intergenic 20.0%
!! TTGTTAATATTAGTTGAAGT+TGG + tig0020873:35170-35189 None:intergenic 20.0%
! CATTTGTAAAAAAAGAACGT+AGG - tig0020873:33396-33415 Msa1386980:three_prime_UTR 25.0%
!! ATTGCTTAGGTTGTTATATA+AGG + tig0020873:33554-33573 None:intergenic 25.0%
! GAATTTGGAAGAATTTCAAA+AGG + tig0020873:33907-33926 None:intergenic 25.0%
! AATATGGGGTATATATGATT+TGG - tig0020873:33947-33966 Msa1386980:intron 25.0%
!! GGAAAATCAAGTTATTGATT+TGG + tig0020873:34320-34339 None:intergenic 25.0%
!! TTGATTTTCCTCTTTTGATA+GGG - tig0020873:34330-34349 Msa1386980:intron 25.0%
! CAATTGAATAGAATTTCACT+TGG + tig0020873:34382-34401 None:intergenic 25.0%
! CAAGTGAAATTCTATTCAAT+TGG - tig0020873:34380-34399 Msa1386980:intron 25.0%
! AGTGAAATTCTATTCAATTG+GGG - tig0020873:34382-34401 Msa1386980:intron 25.0%
! AAAGAAGTTGGATTATAAAC+GGG + tig0020873:34522-34541 None:intergenic 25.0%
! GAAAGAAGTTGGATTATAAA+CGG + tig0020873:34523-34542 None:intergenic 25.0%
! AAGATATTATCGAAAGAAGT+TGG + tig0020873:34534-34553 None:intergenic 25.0%
! TGTTGTGATTAAAGAGATTA+AGG - tig0020873:34734-34753 Msa1386980:intron 25.0%
! GTTGTGATTAAAGAGATTAA+GGG - tig0020873:34735-34754 Msa1386980:intron 25.0%
! AGAATGAATAGGATCAATTA+AGG + tig0020873:34971-34990 None:intergenic 25.0%
! TATGAGATTTGAATTTCATC+CGG - tig0020873:35097-35116 Msa1386980:intron 25.0%
!!! TGTTGCTATTTTGTACTAAT+TGG - tig0020873:35441-35460 Msa1386980:five_prime_UTR 25.0%
!!! GTTGCTATTTTGTACTAATT+GGG - tig0020873:35442-35461 Msa1386980:five_prime_UTR 25.0%
! CATTTGTAAAAAAAGAACGT+AGG - tig0020873:33396-33415 Msa1386980:three_prime_UTR 25.0%
!! ATTGCTTAGGTTGTTATATA+AGG + tig0020873:33554-33573 None:intergenic 25.0%
! GAATTTGGAAGAATTTCAAA+AGG + tig0020873:33907-33926 None:intergenic 25.0%
! AATATGGGGTATATATGATT+TGG - tig0020873:33947-33966 Msa1386980:intron 25.0%
!! GGAAAATCAAGTTATTGATT+TGG + tig0020873:34320-34339 None:intergenic 25.0%
!! TTGATTTTCCTCTTTTGATA+GGG - tig0020873:34330-34349 Msa1386980:intron 25.0%
! CAATTGAATAGAATTTCACT+TGG + tig0020873:34382-34401 None:intergenic 25.0%
! CAAGTGAAATTCTATTCAAT+TGG - tig0020873:34380-34399 Msa1386980:intron 25.0%
! AGTGAAATTCTATTCAATTG+GGG - tig0020873:34382-34401 Msa1386980:intron 25.0%
! AAAGAAGTTGGATTATAAAC+GGG + tig0020873:34522-34541 None:intergenic 25.0%
! GAAAGAAGTTGGATTATAAA+CGG + tig0020873:34523-34542 None:intergenic 25.0%
! AAGATATTATCGAAAGAAGT+TGG + tig0020873:34534-34553 None:intergenic 25.0%
! TGTTGTGATTAAAGAGATTA+AGG - tig0020873:34734-34753 Msa1386980:intron 25.0%
! GTTGTGATTAAAGAGATTAA+GGG - tig0020873:34735-34754 Msa1386980:intron 25.0%
! AGAATGAATAGGATCAATTA+AGG + tig0020873:34971-34990 None:intergenic 25.0%
! TATGAGATTTGAATTTCATC+CGG - tig0020873:35097-35116 Msa1386980:intron 25.0%
!!! TGTTGCTATTTTGTACTAAT+TGG - tig0020873:35441-35460 Msa1386980:five_prime_UTR 25.0%
!!! GTTGCTATTTTGTACTAATT+GGG - tig0020873:35442-35461 Msa1386980:five_prime_UTR 25.0%
AAAAAAGAACGTAGGAGTTT+AGG - tig0020873:33404-33423 Msa1386980:three_prime_UTR 30.0%
AAGAATGGTAGATATTGCTT+AGG + tig0020873:33567-33586 None:intergenic 30.0%
CTTAAGATGAGATGTAAGAA+TGG + tig0020873:33582-33601 None:intergenic 30.0%
GTTTGTGAATTTGATTACAG+TGG - tig0020873:33775-33794 Msa1386980:intron 30.0%
! CTTGATTTTCCTCTTTTGAT+AGG - tig0020873:34329-34348 Msa1386980:intron 30.0%
AGAATTTCACTTGGAGAAAA+TGG + tig0020873:34373-34392 None:intergenic 30.0%
CTATTCAATTGGGGTTTATT+TGG - tig0020873:34391-34410 Msa1386980:intron 30.0%
GAGCTCGTCTATTTATTATT+TGG - tig0020873:34589-34608 Msa1386980:CDS 30.0%
TTCATCCTCATATTTGTCAT+CGG + tig0020873:34811-34830 None:intergenic 30.0%
TGAATAGGATCAATTAAGGT+AGG + tig0020873:34967-34986 None:intergenic 30.0%
!! AGTTGATTTTAGGTACAAGT+TGG - tig0020873:35004-35023 Msa1386980:intron 30.0%
!! TAAGAGTTTGATTTTGTCAC+CGG + tig0020873:35119-35138 None:intergenic 30.0%
ACAACAAACAATCATCACAT+TGG + tig0020873:35211-35230 None:intergenic 30.0%
!! GTTTGTTGTAATACAGATTG+TGG - tig0020873:35222-35241 Msa1386980:intron 30.0%
AATACAGATTGTGGTATCTT+TGG - tig0020873:35231-35250 Msa1386980:intron 30.0%
TAGTGGAGACTATTAAGAAA+TGG - tig0020873:35296-35315 Msa1386980:intron 30.0%
ATTAAGAAATGGTATCTTGC+TGG - tig0020873:35307-35326 Msa1386980:intron 30.0%
! AACACAAAGTTTTCTTCACT+TGG + tig0020873:35395-35414 None:intergenic 30.0%
AAAAAAGAACGTAGGAGTTT+AGG - tig0020873:33404-33423 Msa1386980:three_prime_UTR 30.0%
AAGAATGGTAGATATTGCTT+AGG + tig0020873:33567-33586 None:intergenic 30.0%
CTTAAGATGAGATGTAAGAA+TGG + tig0020873:33582-33601 None:intergenic 30.0%
GTTTGTGAATTTGATTACAG+TGG - tig0020873:33775-33794 Msa1386980:intron 30.0%
! CTTGATTTTCCTCTTTTGAT+AGG - tig0020873:34329-34348 Msa1386980:intron 30.0%
AGAATTTCACTTGGAGAAAA+TGG + tig0020873:34373-34392 None:intergenic 30.0%
CTATTCAATTGGGGTTTATT+TGG - tig0020873:34391-34410 Msa1386980:intron 30.0%
GAGCTCGTCTATTTATTATT+TGG - tig0020873:34589-34608 Msa1386980:CDS 30.0%
TTCATCCTCATATTTGTCAT+CGG + tig0020873:34811-34830 None:intergenic 30.0%
TGAATAGGATCAATTAAGGT+AGG + tig0020873:34967-34986 None:intergenic 30.0%
!! AGTTGATTTTAGGTACAAGT+TGG - tig0020873:35004-35023 Msa1386980:intron 30.0%
!! TAAGAGTTTGATTTTGTCAC+CGG + tig0020873:35119-35138 None:intergenic 30.0%
ACAACAAACAATCATCACAT+TGG + tig0020873:35211-35230 None:intergenic 30.0%
!! GTTTGTTGTAATACAGATTG+TGG - tig0020873:35222-35241 Msa1386980:intron 30.0%
AATACAGATTGTGGTATCTT+TGG - tig0020873:35231-35250 Msa1386980:intron 30.0%
TAGTGGAGACTATTAAGAAA+TGG - tig0020873:35296-35315 Msa1386980:intron 30.0%
ATTAAGAAATGGTATCTTGC+TGG - tig0020873:35307-35326 Msa1386980:intron 30.0%
! AACACAAAGTTTTCTTCACT+TGG + tig0020873:35395-35414 None:intergenic 30.0%
ACTTGTGACTTTCTTTCAAG+TGG + tig0020873:33473-33492 None:intergenic 35.0%
CTACCACCTTAATTTAGCTA+CGG - tig0020873:33510-33529 Msa1386980:three_prime_UTR 35.0%
TGGTAGTAGTGATCTTTGAA+GGG + tig0020873:33835-33854 None:intergenic 35.0%
! TTGGTAGTAGTGATCTTTGA+AGG + tig0020873:33836-33855 None:intergenic 35.0%
CTAAAAGTAGCAAGAGATGT+AGG - tig0020873:34260-34279 Msa1386980:CDS 35.0%
! GTTTCTTGAAGTACTTAGAC+TGG + tig0020873:34869-34888 None:intergenic 35.0%
!!! GATTTTAGGTACAAGTTGGT+TGG - tig0020873:35008-35027 Msa1386980:intron 35.0%
! AGATTGTGGTATCTTTGGAA+GGG - tig0020873:35236-35255 Msa1386980:intron 35.0%
AATAGAGAATGCCAATGTAG+TGG - tig0020873:35279-35298 Msa1386980:intron 35.0%
CTTAATAGTCTCCACTACAT+TGG + tig0020873:35293-35312 None:intergenic 35.0%
TCCTTCAACCATTACATCTT+TGG - tig0020873:35345-35364 Msa1386980:intron 35.0%
ACTTGTGACTTTCTTTCAAG+TGG + tig0020873:33473-33492 None:intergenic 35.0%
CTACCACCTTAATTTAGCTA+CGG - tig0020873:33510-33529 Msa1386980:three_prime_UTR 35.0%
TGGTAGTAGTGATCTTTGAA+GGG + tig0020873:33835-33854 None:intergenic 35.0%
! TTGGTAGTAGTGATCTTTGA+AGG + tig0020873:33836-33855 None:intergenic 35.0%
CTAAAAGTAGCAAGAGATGT+AGG - tig0020873:34260-34279 Msa1386980:CDS 35.0%
! GTTTCTTGAAGTACTTAGAC+TGG + tig0020873:34869-34888 None:intergenic 35.0%
!!! GATTTTAGGTACAAGTTGGT+TGG - tig0020873:35008-35027 Msa1386980:intron 35.0%
! AGATTGTGGTATCTTTGGAA+GGG - tig0020873:35236-35255 Msa1386980:intron 35.0%
AATAGAGAATGCCAATGTAG+TGG - tig0020873:35279-35298 Msa1386980:intron 35.0%
CTTAATAGTCTCCACTACAT+TGG + tig0020873:35293-35312 None:intergenic 35.0%
TCCTTCAACCATTACATCTT+TGG - tig0020873:35345-35364 Msa1386980:intron 35.0%
CGTAGCTAAATTAAGGTGGT+AGG + tig0020873:33512-33531 None:intergenic 40.0%
ACTCCGTAGCTAAATTAAGG+TGG + tig0020873:33516-33535 None:intergenic 40.0%
CACACTCCGTAGCTAAATTA+AGG + tig0020873:33519-33538 None:intergenic 40.0%
TAGAGAGAATTGTGGTGAGA+TGG + tig0020873:33618-33637 None:intergenic 40.0%
AGAGGAAGTAGAGAGAATTG+TGG + tig0020873:33626-33645 None:intergenic 40.0%
ATCGATGTAGATAGAGACAG+AGG + tig0020873:33644-33663 None:intergenic 40.0%
AGCTCTTACTAGTTAGTTGC+TGG + tig0020873:33669-33688 None:intergenic 40.0%
! AGTGGCTAGTGAAACTGTTT+TGG - tig0020873:33793-33812 Msa1386980:intron 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + tig0020873:34054-34073 None:intergenic 40.0%
CTATTTGCCACAATTCAAGG+AGG + tig0020873:34077-34096 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG + tig0020873:34080-34099 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG - tig0020873:34088-34107 Msa1386980:intron 40.0%
TCGGTAATCCCTATCAAAAG+AGG + tig0020873:34341-34360 None:intergenic 40.0%
TTTGATAGGGATTACCGACA+TGG - tig0020873:34343-34362 Msa1386980:intron 40.0%
GAGAAAATGGATCTCCATGT+CGG + tig0020873:34360-34379 None:intergenic 40.0%
ATCATTGTCTTCCAACTCCT+TGG + tig0020873:34462-34481 None:intergenic 40.0%
TTCTTTGACGCTCTCATTTC+TGG - tig0020873:34485-34504 Msa1386980:intron 40.0%
! GAGATTAAGGGTGCACAATA+TGG - tig0020873:34747-34766 Msa1386980:intron 40.0%
GGATGAAGAAGAAGAAGCTT+TGG - tig0020873:34824-34843 Msa1386980:intron 40.0%
GTAAAGTAGCAAGCAGCATT+AGG - tig0020873:34936-34955 Msa1386980:intron 40.0%
CAGATTGTGGTATCTTTGGA+AGG - tig0020873:35235-35254 Msa1386980:intron 40.0%
GCCAAAGATGTAATGGTTGA+AGG + tig0020873:35349-35368 None:intergenic 40.0%
ATGGGTAGCCAAAGATGTAA+TGG + tig0020873:35356-35375 None:intergenic 40.0%
! GGATAATTCCTCTGAGAGAT+GGG + tig0020873:35374-35393 None:intergenic 40.0%
! TGGATAATTCCTCTGAGAGA+TGG + tig0020873:35375-35394 None:intergenic 40.0%
! GACTTTCTCCACTTTGTTTG+CGG - tig0020873:35464-35483 Msa1386980:five_prime_UTR 40.0%
CGTAGCTAAATTAAGGTGGT+AGG + tig0020873:33512-33531 None:intergenic 40.0%
ACTCCGTAGCTAAATTAAGG+TGG + tig0020873:33516-33535 None:intergenic 40.0%
CACACTCCGTAGCTAAATTA+AGG + tig0020873:33519-33538 None:intergenic 40.0%
TAGAGAGAATTGTGGTGAGA+TGG + tig0020873:33618-33637 None:intergenic 40.0%
AGAGGAAGTAGAGAGAATTG+TGG + tig0020873:33626-33645 None:intergenic 40.0%
ATCGATGTAGATAGAGACAG+AGG + tig0020873:33644-33663 None:intergenic 40.0%
AGCTCTTACTAGTTAGTTGC+TGG + tig0020873:33669-33688 None:intergenic 40.0%
! AGTGGCTAGTGAAACTGTTT+TGG - tig0020873:33793-33812 Msa1386980:intron 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + tig0020873:34054-34073 None:intergenic 40.0%
CTATTTGCCACAATTCAAGG+AGG + tig0020873:34077-34096 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG + tig0020873:34080-34099 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG - tig0020873:34088-34107 Msa1386980:intron 40.0%
TCGGTAATCCCTATCAAAAG+AGG + tig0020873:34341-34360 None:intergenic 40.0%
TTTGATAGGGATTACCGACA+TGG - tig0020873:34343-34362 Msa1386980:intron 40.0%
GAGAAAATGGATCTCCATGT+CGG + tig0020873:34360-34379 None:intergenic 40.0%
ATCATTGTCTTCCAACTCCT+TGG + tig0020873:34462-34481 None:intergenic 40.0%
TTCTTTGACGCTCTCATTTC+TGG - tig0020873:34485-34504 Msa1386980:intron 40.0%
! GAGATTAAGGGTGCACAATA+TGG - tig0020873:34747-34766 Msa1386980:intron 40.0%
GGATGAAGAAGAAGAAGCTT+TGG - tig0020873:34824-34843 Msa1386980:intron 40.0%
GTAAAGTAGCAAGCAGCATT+AGG - tig0020873:34936-34955 Msa1386980:intron 40.0%
CAGATTGTGGTATCTTTGGA+AGG - tig0020873:35235-35254 Msa1386980:intron 40.0%
GCCAAAGATGTAATGGTTGA+AGG + tig0020873:35349-35368 None:intergenic 40.0%
ATGGGTAGCCAAAGATGTAA+TGG + tig0020873:35356-35375 None:intergenic 40.0%
! GGATAATTCCTCTGAGAGAT+GGG + tig0020873:35374-35393 None:intergenic 40.0%
! TGGATAATTCCTCTGAGAGA+TGG + tig0020873:35375-35394 None:intergenic 40.0%
! GACTTTCTCCACTTTGTTTG+CGG - tig0020873:35464-35483 Msa1386980:five_prime_UTR 40.0%
ACCAAAACCCTTTCTCTCCT+TGG - tig0020873:33851-33870 Msa1386980:intron 45.0%
! ACCAAGGAGAGAAAGGGTTT+TGG + tig0020873:33855-33874 None:intergenic 45.0%
ACCATGACCAAGGAGAGAAA+GGG + tig0020873:33861-33880 None:intergenic 45.0%
TACCATGACCAAGGAGAGAA+AGG + tig0020873:33862-33881 None:intergenic 45.0%
GTAGCAACTTACCATGACCA+AGG + tig0020873:33871-33890 None:intergenic 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG + tig0020873:34060-34079 None:intergenic 45.0%
TACCTTTCCACTGTTGCAAG+TGG + tig0020873:34433-34452 None:intergenic 45.0%
AGTCTAATTGCCTTCTCCAC+AGG + tig0020873:34714-34733 None:intergenic 45.0%
! ATTTGTCATCGGCTGCCAAA+CGG + tig0020873:34800-34819 None:intergenic 45.0%
!! TGCTACTTTACCTCTGCAGT+TGG + tig0020873:34927-34946 None:intergenic 45.0%
!! AATGGTATCTTGCTGGCTCA+AGG - tig0020873:35314-35333 Msa1386980:intron 45.0%
!! ATGGTATCTTGCTGGCTCAA+GGG - tig0020873:35315-35334 Msa1386980:intron 45.0%
GCAGAATTCCGCAAACAAAG+TGG + tig0020873:35475-35494 None:intergenic 45.0%
CATTGCACGTGTGGAATCTA+TGG + tig0020873:35585-35604 None:intergenic 45.0%
CATAGATTCCACACGTGCAA+TGG - tig0020873:35583-35602 Msa1386980:five_prime_UTR 45.0%
AAAGTTTGCCATTGCACGTG+TGG + tig0020873:35594-35613 None:intergenic 45.0%
ACCAAAACCCTTTCTCTCCT+TGG - tig0020873:33851-33870 Msa1386980:intron 45.0%
! ACCAAGGAGAGAAAGGGTTT+TGG + tig0020873:33855-33874 None:intergenic 45.0%
ACCATGACCAAGGAGAGAAA+GGG + tig0020873:33861-33880 None:intergenic 45.0%
TACCATGACCAAGGAGAGAA+AGG + tig0020873:33862-33881 None:intergenic 45.0%
GTAGCAACTTACCATGACCA+AGG + tig0020873:33871-33890 None:intergenic 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG + tig0020873:34060-34079 None:intergenic 45.0%
TACCTTTCCACTGTTGCAAG+TGG + tig0020873:34433-34452 None:intergenic 45.0%
AGTCTAATTGCCTTCTCCAC+AGG + tig0020873:34714-34733 None:intergenic 45.0%
! ATTTGTCATCGGCTGCCAAA+CGG + tig0020873:34800-34819 None:intergenic 45.0%
!! TGCTACTTTACCTCTGCAGT+TGG + tig0020873:34927-34946 None:intergenic 45.0%
!! AATGGTATCTTGCTGGCTCA+AGG - tig0020873:35314-35333 Msa1386980:intron 45.0%
!! ATGGTATCTTGCTGGCTCAA+GGG - tig0020873:35315-35334 Msa1386980:intron 45.0%
GCAGAATTCCGCAAACAAAG+TGG + tig0020873:35475-35494 None:intergenic 45.0%
CATTGCACGTGTGGAATCTA+TGG + tig0020873:35585-35604 None:intergenic 45.0%
CATAGATTCCACACGTGCAA+TGG - tig0020873:35583-35602 Msa1386980:five_prime_UTR 45.0%
AAAGTTTGCCATTGCACGTG+TGG + tig0020873:35594-35613 None:intergenic 45.0%
ACCCTTTCTCTCCTTGGTCA+TGG - tig0020873:33857-33876 Msa1386980:intron 50.0%
AGCCACACCTCCTTGAATTG+TGG - tig0020873:34067-34086 Msa1386980:intron 50.0%
TGCCACAATTCAAGGAGGTG+TGG + tig0020873:34072-34091 None:intergenic 50.0%
!! TGCAAGTGGCTTGCTACTTC+AGG + tig0020873:34419-34438 None:intergenic 50.0%
TAGCAAGCCACTTGCAACAG+TGG - tig0020873:34423-34442 Msa1386980:intron 50.0%
AGCCACTTGCAACAGTGGAA+AGG - tig0020873:34428-34447 Msa1386980:intron 50.0%
TTGTCTTCCAACTCCTTGGC+AGG + tig0020873:34458-34477 None:intergenic 50.0%
GTGAATATGTGCAGCTCCTG+TGG - tig0020873:34695-34714 Msa1386980:intron 50.0%
TTCAGATTGAGACCGCTGTG+AGG - tig0020873:34772-34791 Msa1386980:intron 50.0%
TCAGATTGAGACCGCTGTGA+GGG - tig0020873:34773-34792 Msa1386980:intron 50.0%
GGCAGCCGATGACAAATATG+AGG - tig0020873:34803-34822 Msa1386980:intron 50.0%
! CTGCAGTTGGAGAGTTTGCT+GGG + tig0020873:34914-34933 None:intergenic 50.0%
TCTGCAGTTGGAGAGTTTGC+TGG + tig0020873:34915-34934 None:intergenic 50.0%
AGCAAACTCTCCAACTGCAG+AGG - tig0020873:34914-34933 Msa1386980:intron 50.0%
TTTGGCTACCCATCTCTCAG+AGG - tig0020873:35363-35382 Msa1386980:five_prime_UTR 50.0%
ACCCTTTCTCTCCTTGGTCA+TGG - tig0020873:33857-33876 Msa1386980:intron 50.0%
AGCCACACCTCCTTGAATTG+TGG - tig0020873:34067-34086 Msa1386980:intron 50.0%
TGCCACAATTCAAGGAGGTG+TGG + tig0020873:34072-34091 None:intergenic 50.0%
!! TGCAAGTGGCTTGCTACTTC+AGG + tig0020873:34419-34438 None:intergenic 50.0%
TAGCAAGCCACTTGCAACAG+TGG - tig0020873:34423-34442 Msa1386980:intron 50.0%
AGCCACTTGCAACAGTGGAA+AGG - tig0020873:34428-34447 Msa1386980:intron 50.0%
TTGTCTTCCAACTCCTTGGC+AGG + tig0020873:34458-34477 None:intergenic 50.0%
GTGAATATGTGCAGCTCCTG+TGG - tig0020873:34695-34714 Msa1386980:intron 50.0%
TTCAGATTGAGACCGCTGTG+AGG - tig0020873:34772-34791 Msa1386980:intron 50.0%
TCAGATTGAGACCGCTGTGA+GGG - tig0020873:34773-34792 Msa1386980:intron 50.0%
GGCAGCCGATGACAAATATG+AGG - tig0020873:34803-34822 Msa1386980:intron 50.0%
! CTGCAGTTGGAGAGTTTGCT+GGG + tig0020873:34914-34933 None:intergenic 50.0%
TCTGCAGTTGGAGAGTTTGC+TGG + tig0020873:34915-34934 None:intergenic 50.0%
AGCAAACTCTCCAACTGCAG+AGG - tig0020873:34914-34933 Msa1386980:intron 50.0%
TTTGGCTACCCATCTCTCAG+AGG - tig0020873:35363-35382 Msa1386980:five_prime_UTR 50.0%
GTGGAAAGGTAAGCCTGCCA+AGG - tig0020873:34442-34461 Msa1386980:intron 55.0%
AGGTAAGCCTGCCAAGGAGT+TGG - tig0020873:34448-34467 Msa1386980:intron 55.0%
ATGTGCAGCTCCTGTGGAGA+AGG - tig0020873:34701-34720 Msa1386980:intron 55.0%
GTGGAAAGGTAAGCCTGCCA+AGG - tig0020873:34442-34461 Msa1386980:intron 55.0%
AGGTAAGCCTGCCAAGGAGT+TGG - tig0020873:34448-34467 Msa1386980:intron 55.0%
ATGTGCAGCTCCTGTGGAGA+AGG - tig0020873:34701-34720 Msa1386980:intron 55.0%
TGCCAAACGGTCCCTCACAG+CGG + tig0020873:34787-34806 None:intergenic 60.0%
TGCCAAACGGTCCCTCACAG+CGG + tig0020873:34787-34806 None:intergenic 60.0%
GACCGCTGTGAGGGACCGTT+TGG - tig0020873:34782-34801 Msa1386980:intron 65.0%
GACCGCTGTGAGGGACCGTT+TGG - tig0020873:34782-34801 Msa1386980:intron 65.0%
Chromosome Type Strat End Strand Name
tig0020873 gene 33395 35632 33395 ID=Msa1386980;Name=Msa1386980
tig0020873 mRNA 33395 35632 33395 ID=Msa1386980-mRNA-1;Parent=Msa1386980;Name=Msa1386980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=284|1|1|1|0.75|0.8|5|233|209
tig0020873 exon 33395 33789 33395 ID=Msa1386980-mRNA-1:exon:10429;Parent=Msa1386980-mRNA-1
tig0020873 exon 34092 34318 34092 ID=Msa1386980-mRNA-1:exon:10428;Parent=Msa1386980-mRNA-1
tig0020873 exon 34521 34676 34521 ID=Msa1386980-mRNA-1:exon:10427;Parent=Msa1386980-mRNA-1
tig0020873 exon 35149 35232 35149 ID=Msa1386980-mRNA-1:exon:10426;Parent=Msa1386980-mRNA-1
tig0020873 exon 35348 35632 35348 ID=Msa1386980-mRNA-1:exon:10425;Parent=Msa1386980-mRNA-1
tig0020873 five_prime_UTR 35349 35632 35349 ID=Msa1386980-mRNA-1:five_prime_utr;Parent=Msa1386980-mRNA-1
tig0020873 CDS 35348 35348 35348 ID=Msa1386980-mRNA-1:cds;Parent=Msa1386980-mRNA-1
tig0020873 CDS 35149 35232 35149 ID=Msa1386980-mRNA-1:cds;Parent=Msa1386980-mRNA-1
tig0020873 CDS 34521 34676 34521 ID=Msa1386980-mRNA-1:cds;Parent=Msa1386980-mRNA-1
tig0020873 CDS 34092 34318 34092 ID=Msa1386980-mRNA-1:cds;Parent=Msa1386980-mRNA-1
tig0020873 CDS 33628 33789 33628 ID=Msa1386980-mRNA-1:cds;Parent=Msa1386980-mRNA-1
tig0020873 three_prime_UTR 33395 33627 33395 ID=Msa1386980-mRNA-1:three_prime_utr;Parent=Msa1386980-mRNA-1
Gene Sequence

>Msa1386980

ATGGCTAGTGAAACTGTTTTGGTCGATGAAATCTCTTACCCTTCAAAGATCACTACTACCAAAACCCTTTCTCTCCTTGGTCATGGGATTACCGACATGGAGATCCATTTTCTCCAAGTGAAATTCTATTCAATTGGGGTTTATTTGGAACCTGAAGTAGCAAGCCACTTGCAACAGTGGAAAGGTAAGCCTGCCAAGGAGTTGGAAGACAATGATGACTTCTTTGACGCTCTCATTTCTGCTCCTGTGGAGAAGGCAATTAGACTTGTTGTGATTAAAGAGATTAAGGGTGCACAATATGGTGTTCAGATTGAGACCGCTGTGAGGGACCGTTTGGCAGCCGATGACAAATATGAGGATGAAGAAGAAGAAGCTTTGGAAAAAGTAATTGAATTTTTCCAGTCTAAGTACTTCAAGAAACACTCAGTCATCACATATCATTTCCCAGCAAACTCTCCAACTGCAGAGATTGTGGTATCTTTGGAAGGGAAAGAAGACTCAAAGTATGTAATAGAGAATGCCAATGTAGTGGAGACTATTAAGAAATGGTATCTTGCTGGCTCAAGGGCTATATCTCCTTCAACCATTACATCTTTGGCTACCCATCTCTCAGAGGAATTATCCAAGTGA

Protein sequence

>Msa1386980

MASETVLVDEISYPSKITTTKTLSLLGHGITDMEIHFLQVKFYSIGVYLEPEVASHLQQWKGKPAKELEDNDDFFDALISAPVEKAIRLVVIKEIKGAQYGVQIETAVRDRLAADDKYEDEEEEALEKVIEFFQSKYFKKHSVITYHFPANSPTAEIVVSLEGKEDSKYVIENANVVETIKKWYLAGSRAISPSTITSLATHLSEELSK*