AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1223960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223960 MtrunA17_Chr4g0076051 96.154 234 9 0 1 234 1 234 1.31e-165 464
Msa1223960 MtrunA17_Chr2g0290131 68.571 210 65 1 25 234 29 237 4.66e-99 296
Msa1223960 MtrunA17_Chr2g0278181 97.241 145 4 0 90 234 1 145 2.43e-97 288
Msa1223960 MtrunA17_Chr3g0101961 41.038 212 118 3 25 233 26 233 4.24e-47 161
Msa1223960 MtrunA17_Chr7g0234191 30.603 232 142 6 15 238 66 286 1.39e-31 121
Msa1223960 MtrunA17_Chr8g0338731 33.500 200 122 6 1 198 8 198 1.33e-26 103
Msa1223960 MtrunA17_Chr5g0447771 32.589 224 130 6 25 233 60 277 9.18e-23 97.1
Msa1223960 MtrunA17_Chr7g0261921 36.441 118 74 1 90 207 1 117 5.40e-20 84.3
Msa1223960 MtrunA17_Chr5g0444651 29.032 248 149 9 6 234 13 252 1.96e-19 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223960 AT5G47530.1 50.218 229 105 5 14 238 16 239 1.49e-68 218
Msa1223960 AT4G17280.1 44.309 246 121 6 1 238 10 247 4.43e-59 193
Msa1223960 AT5G48750.1 43.458 214 111 5 24 233 33 240 8.93e-52 170
Msa1223960 AT5G35735.1 43.162 234 126 5 5 236 9 237 8.82e-51 172
Msa1223960 AT3G59070.1 40.756 238 127 6 6 233 10 243 3.51e-48 166
Msa1223960 AT3G25290.1 34.914 232 134 8 15 234 18 244 4.59e-34 127
Msa1223960 AT3G25290.2 34.914 232 134 8 15 234 18 244 4.59e-34 127
Msa1223960 AT4G12980.1 35.510 245 141 7 2 234 6 245 5.87e-30 116
Msa1223960 AT2G04850.1 34.259 216 121 7 34 233 32 242 8.72e-29 113
Msa1223960 AT3G07390.1 33.679 193 117 6 9 199 36 219 7.14e-25 100
Msa1223960 AT3G07390.2 37.931 116 65 4 9 123 36 145 5.64e-17 77.0

Find 69 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTAGTTATCCTGTTTC+TGG 0.137764 8_1:-88586617 Msa1223960:CDS
GAAGTCTTGGATCTTGTTTC+TGG 0.179617 8_1:-88586434 Msa1223960:CDS
CCAAGACTTCCTTAGAGTTT+TGG 0.257990 8_1:+88586447 None:intergenic
ATGTTTGAAGTATATGCTTT+TGG 0.274313 8_1:+88586671 None:intergenic
TCCAAATGGAACAACCTCTT+TGG 0.315874 8_1:-88586540 Msa1223960:CDS
CTGGAATAACTGCAACAAAT+AGG 0.325023 8_1:-88586787 Msa1223960:CDS
CTTTGTTGTTTGAGAATGTT+TGG 0.332596 8_1:+88586906 None:intergenic
CAACAAATAGGTGGGTTGCT+TGG 0.346817 8_1:-88586775 Msa1223960:CDS
AAGGGTGCTGCTTGGATTGA+TGG 0.347392 8_1:+88586751 None:intergenic
ACCAAAGAGGTTGTTCCATT+TGG 0.348727 8_1:+88586539 None:intergenic
GCTTGTGCTCCGATCATGGC+TGG 0.356922 8_1:+88586725 None:intergenic
ACCAATCCCACTTGCAGCTT+GGG 0.378912 8_1:+88586406 None:intergenic
AACAAATAGGTGGGTTGCTT+GGG 0.381341 8_1:-88586774 Msa1223960:CDS
TGGTTCATGTATGGCAAGAT+GGG 0.403428 8_1:-88586520 Msa1223960:CDS
TTGGTTCATGTATGGCAAGA+TGG 0.409548 8_1:-88586521 Msa1223960:CDS
ATCTTCTCACCAAAACTCTA+AGG 0.410472 8_1:-88586456 Msa1223960:CDS
CAACCTCTTTGGTTCATGTA+TGG 0.419802 8_1:-88586529 Msa1223960:CDS
AGTTCTAAATGCAATAAGTT+GGG 0.423172 8_1:-88585812 Msa1223960:CDS
TTTGGGCTTCCACTGGCTTG+TGG 0.428919 8_1:+88586689 None:intergenic
ACCAGAAACAGGATAACTAA+TGG 0.433626 8_1:+88586616 None:intergenic
CCAAAACTCTAAGGAAGTCT+TGG 0.434557 8_1:-88586447 Msa1223960:CDS
CAAAGCTTGTGCTCCGATCA+TGG 0.437700 8_1:+88586721 None:intergenic
ATAGATGAGGGCTCATGCCC+TGG 0.447607 8_1:-88584793 Msa1223960:intron
TGGGGAATCTTGATGCCAAC+AGG 0.450699 8_1:-88585793 Msa1223960:CDS
GCTGGGTCAAGGGTGCTGCT+TGG 0.458703 8_1:+88586743 None:intergenic
GTGGCAGACAAACCAGAAAC+AGG 0.463187 8_1:+88586605 None:intergenic
GCTACTTTGACCCTTCCAAA+TGG 0.468426 8_1:-88586554 Msa1223960:CDS
CATGATCGGAGCACAAGCTT+TGG 0.470343 8_1:-88586720 Msa1223960:CDS
TCCCAAGCTGCAAGTGGGAT+TGG 0.471818 8_1:-88586407 Msa1223960:CDS
AACCAATCCCACTTGCAGCT+TGG 0.473554 8_1:+88586405 None:intergenic
TCCGATCATGGCTGGGTCAA+GGG 0.488469 8_1:+88586733 None:intergenic
CTCCGATCATGGCTGGGTCA+AGG 0.489759 8_1:+88586732 None:intergenic
ACCCTTGACCCAGCCATGAT+CGG 0.495736 8_1:-88586734 Msa1223960:CDS
AAGAGGTTGTTCCATTTGGA+AGG 0.497441 8_1:+88586543 None:intergenic
GATCGGAGCACAAGCTTTGG+TGG 0.497818 8_1:-88586717 Msa1223960:CDS
CATGGTTGAGCAAAAGCTCC+AGG 0.500306 8_1:+88584775 None:intergenic
GAGTTCTAAATGCAATAAGT+TGG 0.504686 8_1:-88585813 Msa1223960:CDS
AGTAATAGCAAGGTATTTGA+AGG 0.512011 8_1:-88585767 Msa1223960:intron
AGTTAACCTCGTACCTCCAC+TGG 0.539955 8_1:-88586856 Msa1223960:CDS
CTTGTGCTCCGATCATGGCT+GGG 0.548227 8_1:+88586726 None:intergenic
GAATAACTGCAACAAATAGG+TGG 0.552346 8_1:-88586784 Msa1223960:CDS
CTTGCTATTACTGCTCCTGT+TGG 0.560569 8_1:+88585778 None:intergenic
GATTCATGGCTATGTTCTTG+AGG 0.562296 8_1:+88586476 None:intergenic
GGTTCATGTATGGCAAGATG+GGG 0.572736 8_1:-88586519 Msa1223960:CDS
GTTCTAAATGCAATAAGTTG+GGG 0.579470 8_1:-88585811 Msa1223960:CDS
AGAGGTTGTTCCATTTGGAA+GGG 0.580852 8_1:+88586544 None:intergenic
ACATGATTGGGTTTGAGCTG+AGG 0.587718 8_1:+88586934 None:intergenic
GAGCAAAAGCTCCATCGTCA+TGG 0.590446 8_1:+88584757 None:intergenic
CATCATGTTGAGGCTTACGT+TGG 0.594673 8_1:-88586990 None:intergenic
AATCCCACTTGCAGCTTGGG+AGG 0.599310 8_1:+88586409 None:intergenic
GGTACCTCCCAAGCTGCAAG+TGG 0.604136 8_1:-88586413 Msa1223960:CDS
GTGGCTATTCCACAAGCCAG+TGG 0.609291 8_1:-88586698 Msa1223960:CDS
AATAACTGCAACAAATAGGT+GGG 0.611835 8_1:-88586783 Msa1223960:CDS
TTGTTTCATCGTATGACCAG+TGG 0.615698 8_1:+88586840 None:intergenic
ACAAGCACACGGTTGCAAGA+AGG 0.618408 8_1:-88586641 Msa1223960:CDS
GACATAGCATACATACACAC+TGG 0.619673 8_1:-88586806 Msa1223960:CDS
TTGCCATACATGAACCAAAG+AGG 0.632447 8_1:+88586526 None:intergenic
CAACAGGAGCAGTAATAGCA+AGG 0.639419 8_1:-88585777 Msa1223960:CDS
TTTCATCGTATGACCAGTGG+AGG 0.641448 8_1:+88586843 None:intergenic
ATGGTTGAGCAAAAGCTCCA+GGG 0.649696 8_1:+88584776 None:intergenic
GAGCAAAAGCTCCATCGTCG+TGG 0.660242 8_1:+88584707 None:intergenic
AACCTCATTATTCTGATACG+TGG 0.667735 8_1:+88586586 None:intergenic
GTACCTCCCAAGCTGCAAGT+GGG 0.668450 8_1:-88586412 Msa1223960:CDS
TGGAGGTACGAGGTTAACTG+TGG 0.671548 8_1:+88586860 None:intergenic
TGGTCATACGATGAAACAAG+TGG 0.675142 8_1:-88586836 Msa1223960:CDS
TGCCACGTATCAGAATAATG+AGG 0.677711 8_1:-88586588 Msa1223960:CDS
ACATTGTAGACACAAGCACA+CGG 0.692248 8_1:-88586652 Msa1223960:CDS
TATGCTACTCAAAACACACA+AGG 0.702224 8_1:+88586967 None:intergenic
GTATGACCAGTGGAGGTACG+AGG 0.705546 8_1:+88586850 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTAAATAAAGTTCT+AGG + chr8_1:88585568-88585587 None:intergenic 10.0%
!!! ACTTTTAGTTTAATTATAAA+AGG + chr8_1:88586145-88586164 None:intergenic 10.0%
!!! AATTTTTTAAATAAAGTTCT+AGG + chr8_1:88585568-88585587 None:intergenic 10.0%
!!! ACTTTTAGTTTAATTATAAA+AGG + chr8_1:88586145-88586164 None:intergenic 10.0%
!! AAATATTTATAATGATCCAA+CGG + chr8_1:88585364-88585383 None:intergenic 15.0%
!! GAAATATAATAAAAGATGAT+AGG + chr8_1:88586349-88586368 None:intergenic 15.0%
!! AAATATTTATAATGATCCAA+CGG + chr8_1:88585364-88585383 None:intergenic 15.0%
!! GAAATATAATAAAAGATGAT+AGG + chr8_1:88586349-88586368 None:intergenic 15.0%
!! CACGACATAATTTATAAAAT+TGG + chr8_1:88585744-88585763 None:intergenic 20.0%
!! GTGTTAGTACTTTATAATTA+GGG - chr8_1:88585761-88585780 Msa1223960:intron 20.0%
!!! CTTATTTAAGATGTAAATGT+CGG - chr8_1:88586725-88586744 Msa1223960:CDS 20.0%
!! CACGACATAATTTATAAAAT+TGG + chr8_1:88585744-88585763 None:intergenic 20.0%
!! GTGTTAGTACTTTATAATTA+GGG - chr8_1:88585761-88585780 Msa1223960:intron 20.0%
!!! CTTATTTAAGATGTAAATGT+CGG - chr8_1:88586725-88586744 Msa1223960:CDS 20.0%
!!! TGTTTGGTTTTTACATGATT+GGG + chr8_1:88584741-88584760 None:intergenic 25.0%
!!! ATGTTTGGTTTTTACATGAT+TGG + chr8_1:88584742-88584761 None:intergenic 25.0%
!!! TGTTTGAAGTATATGCTTTT+GGG + chr8_1:88584991-88585010 None:intergenic 25.0%
!!! ATGTTTGAAGTATATGCTTT+TGG + chr8_1:88584992-88585011 None:intergenic 25.0%
!! TGTAAGTTCATACTGTTTTA+AGG - chr8_1:88585297-88585316 Msa1223960:intron 25.0%
! ACTCTCTATTATCAAGAATT+TGG + chr8_1:88585489-88585508 None:intergenic 25.0%
! AACAGGATAATACAATCATA+TGG + chr8_1:88585616-88585635 None:intergenic 25.0%
! TATGATTGTATTATCCTGTT+TGG - chr8_1:88585616-88585635 Msa1223960:intron 25.0%
! CGTGTTAGTACTTTATAATT+AGG - chr8_1:88585760-88585779 Msa1223960:intron 25.0%
!! ATTCTTAATTTTCAGACACA+TGG - chr8_1:88585825-88585844 Msa1223960:intron 25.0%
!!! AGTTCTAAATGCAATAAGTT+GGG - chr8_1:88585848-88585867 Msa1223960:intron 25.0%
!! ATAAAAGGTAACAGACTTTT+AGG + chr8_1:88586130-88586149 None:intergenic 25.0%
!! TGCTTATATCTAAGAGTATA+AGG + chr8_1:88586301-88586320 None:intergenic 25.0%
! AGGAGATAGGAAATATATAA+TGG - chr8_1:88586397-88586416 Msa1223960:CDS 25.0%
! GTTTAGTTGTGAGATATAAA+AGG - chr8_1:88586451-88586470 Msa1223960:CDS 25.0%
! AGATATAAAAGGAATAGTCT+GGG - chr8_1:88586462-88586481 Msa1223960:CDS 25.0%
!!! TGTTTGGTTTTTACATGATT+GGG + chr8_1:88584741-88584760 None:intergenic 25.0%
!!! ATGTTTGGTTTTTACATGAT+TGG + chr8_1:88584742-88584761 None:intergenic 25.0%
!!! TGTTTGAAGTATATGCTTTT+GGG + chr8_1:88584991-88585010 None:intergenic 25.0%
!!! ATGTTTGAAGTATATGCTTT+TGG + chr8_1:88584992-88585011 None:intergenic 25.0%
!! TGTAAGTTCATACTGTTTTA+AGG - chr8_1:88585297-88585316 Msa1223960:intron 25.0%
! ACTCTCTATTATCAAGAATT+TGG + chr8_1:88585489-88585508 None:intergenic 25.0%
! AACAGGATAATACAATCATA+TGG + chr8_1:88585616-88585635 None:intergenic 25.0%
! TATGATTGTATTATCCTGTT+TGG - chr8_1:88585616-88585635 Msa1223960:intron 25.0%
! CGTGTTAGTACTTTATAATT+AGG - chr8_1:88585760-88585779 Msa1223960:intron 25.0%
!! ATTCTTAATTTTCAGACACA+TGG - chr8_1:88585825-88585844 Msa1223960:intron 25.0%
!!! AGTTCTAAATGCAATAAGTT+GGG - chr8_1:88585848-88585867 Msa1223960:intron 25.0%
!! ATAAAAGGTAACAGACTTTT+AGG + chr8_1:88586130-88586149 None:intergenic 25.0%
!! TGCTTATATCTAAGAGTATA+AGG + chr8_1:88586301-88586320 None:intergenic 25.0%
! AGGAGATAGGAAATATATAA+TGG - chr8_1:88586397-88586416 Msa1223960:CDS 25.0%
! GTTTAGTTGTGAGATATAAA+AGG - chr8_1:88586451-88586470 Msa1223960:CDS 25.0%
! AGATATAAAAGGAATAGTCT+GGG - chr8_1:88586462-88586481 Msa1223960:CDS 25.0%
!! CTTTGTTGTTTGAGAATGTT+TGG + chr8_1:88584757-88584776 None:intergenic 30.0%
AATAACTGCAACAAATAGGT+GGG - chr8_1:88584877-88584896 Msa1223960:intron 30.0%
! GAATTTTTACACAAAACCGT+TGG - chr8_1:88585345-88585364 Msa1223960:intron 30.0%
ATCATTATGTGTTTCGATTG+TGG - chr8_1:88585509-88585528 Msa1223960:intron 30.0%
TGGTCATAATGTAATTGCAT+AGG - chr8_1:88585529-88585548 Msa1223960:intron 30.0%
!! AAAGTTCTAGGATTGTGATA+TGG + chr8_1:88585556-88585575 None:intergenic 30.0%
! ACACCTCAAATTTAAAGTGT+CGG + chr8_1:88585655-88585674 None:intergenic 30.0%
!! GAGTTCTAAATGCAATAAGT+TGG - chr8_1:88585847-88585866 Msa1223960:intron 30.0%
! GTTCTAAATGCAATAAGTTG+GGG - chr8_1:88585849-88585868 Msa1223960:intron 30.0%
! AGTAATAGCAAGGTATTTGA+AGG - chr8_1:88585893-88585912 Msa1223960:intron 30.0%
ACAATAGTTTCCAAGATTAG+TGG + chr8_1:88586175-88586194 None:intergenic 30.0%
TTATTATATTTCCCCAGCAA+TGG - chr8_1:88586357-88586376 Msa1223960:intron 30.0%
GAGATATAAAAGGAATAGTC+TGG - chr8_1:88586461-88586480 Msa1223960:CDS 30.0%
TAATTGACGATGAGGTTATT+TGG - chr8_1:88586560-88586579 Msa1223960:CDS 30.0%
CATCTATAAATGAGTATGCA+TGG + chr8_1:88586854-88586873 None:intergenic 30.0%
TGCATACTCATTTATAGATG+AGG - chr8_1:88586854-88586873 Msa1223960:CDS 30.0%
GCATACTCATTTATAGATGA+GGG - chr8_1:88586855-88586874 Msa1223960:CDS 30.0%
!! CTTTGTTGTTTGAGAATGTT+TGG + chr8_1:88584757-88584776 None:intergenic 30.0%
AATAACTGCAACAAATAGGT+GGG - chr8_1:88584877-88584896 Msa1223960:intron 30.0%
! GAATTTTTACACAAAACCGT+TGG - chr8_1:88585345-88585364 Msa1223960:intron 30.0%
ATCATTATGTGTTTCGATTG+TGG - chr8_1:88585509-88585528 Msa1223960:intron 30.0%
TGGTCATAATGTAATTGCAT+AGG - chr8_1:88585529-88585548 Msa1223960:intron 30.0%
!! AAAGTTCTAGGATTGTGATA+TGG + chr8_1:88585556-88585575 None:intergenic 30.0%
! ACACCTCAAATTTAAAGTGT+CGG + chr8_1:88585655-88585674 None:intergenic 30.0%
!! GAGTTCTAAATGCAATAAGT+TGG - chr8_1:88585847-88585866 Msa1223960:intron 30.0%
! GTTCTAAATGCAATAAGTTG+GGG - chr8_1:88585849-88585868 Msa1223960:intron 30.0%
! AGTAATAGCAAGGTATTTGA+AGG - chr8_1:88585893-88585912 Msa1223960:intron 30.0%
ACAATAGTTTCCAAGATTAG+TGG + chr8_1:88586175-88586194 None:intergenic 30.0%
TTATTATATTTCCCCAGCAA+TGG - chr8_1:88586357-88586376 Msa1223960:intron 30.0%
GAGATATAAAAGGAATAGTC+TGG - chr8_1:88586461-88586480 Msa1223960:CDS 30.0%
TAATTGACGATGAGGTTATT+TGG - chr8_1:88586560-88586579 Msa1223960:CDS 30.0%
CATCTATAAATGAGTATGCA+TGG + chr8_1:88586854-88586873 None:intergenic 30.0%
TGCATACTCATTTATAGATG+AGG - chr8_1:88586854-88586873 Msa1223960:CDS 30.0%
GCATACTCATTTATAGATGA+GGG - chr8_1:88586855-88586874 Msa1223960:CDS 30.0%
TATGCTACTCAAAACACACA+AGG + chr8_1:88584696-88584715 None:intergenic 35.0%
CTGGAATAACTGCAACAAAT+AGG - chr8_1:88584873-88584892 Msa1223960:intron 35.0%
GAATAACTGCAACAAATAGG+TGG - chr8_1:88584876-88584895 Msa1223960:intron 35.0%
TCCATTAGTTATCCTGTTTC+TGG - chr8_1:88585043-88585062 Msa1223960:intron 35.0%
ACCAGAAACAGGATAACTAA+TGG + chr8_1:88585047-88585066 None:intergenic 35.0%
AACCTCATTATTCTGATACG+TGG + chr8_1:88585077-88585096 None:intergenic 35.0%
!! AGTTTTGGTGAGAAGATTCA+TGG + chr8_1:88585201-88585220 None:intergenic 35.0%
ATCTTCTCACCAAAACTCTA+AGG - chr8_1:88585204-88585223 Msa1223960:intron 35.0%
ACACCGACACTTTAAATTTG+AGG - chr8_1:88585649-88585668 Msa1223960:intron 35.0%
CACATATGTAAGTACCAAGT+TGG + chr8_1:88585717-88585736 None:intergenic 35.0%
CAACTTGGTACTTACATATG+TGG - chr8_1:88585715-88585734 Msa1223960:intron 35.0%
CACCAAATTATATCCAGTTG+CGG - chr8_1:88586272-88586291 Msa1223960:intron 35.0%
ATAATGGTTCTTCGAACACT+AGG - chr8_1:88586413-88586432 Msa1223960:CDS 35.0%
TAAGGAGTTAATTGACGATG+AGG - chr8_1:88586552-88586571 Msa1223960:CDS 35.0%
TATGCTACTCAAAACACACA+AGG + chr8_1:88584696-88584715 None:intergenic 35.0%
CTGGAATAACTGCAACAAAT+AGG - chr8_1:88584873-88584892 Msa1223960:intron 35.0%
GAATAACTGCAACAAATAGG+TGG - chr8_1:88584876-88584895 Msa1223960:intron 35.0%
TCCATTAGTTATCCTGTTTC+TGG - chr8_1:88585043-88585062 Msa1223960:intron 35.0%
ACCAGAAACAGGATAACTAA+TGG + chr8_1:88585047-88585066 None:intergenic 35.0%
AACCTCATTATTCTGATACG+TGG + chr8_1:88585077-88585096 None:intergenic 35.0%
!! AGTTTTGGTGAGAAGATTCA+TGG + chr8_1:88585201-88585220 None:intergenic 35.0%
ATCTTCTCACCAAAACTCTA+AGG - chr8_1:88585204-88585223 Msa1223960:intron 35.0%
ACACCGACACTTTAAATTTG+AGG - chr8_1:88585649-88585668 Msa1223960:intron 35.0%
CACATATGTAAGTACCAAGT+TGG + chr8_1:88585717-88585736 None:intergenic 35.0%
CAACTTGGTACTTACATATG+TGG - chr8_1:88585715-88585734 Msa1223960:intron 35.0%
CACCAAATTATATCCAGTTG+CGG - chr8_1:88586272-88586291 Msa1223960:intron 35.0%
ATAATGGTTCTTCGAACACT+AGG - chr8_1:88586413-88586432 Msa1223960:CDS 35.0%
TAAGGAGTTAATTGACGATG+AGG - chr8_1:88586552-88586571 Msa1223960:CDS 35.0%
TTGTTTCATCGTATGACCAG+TGG + chr8_1:88584823-88584842 None:intergenic 40.0%
TGGTCATACGATGAAACAAG+TGG - chr8_1:88584824-88584843 Msa1223960:intron 40.0%
GACATAGCATACATACACAC+TGG - chr8_1:88584854-88584873 Msa1223960:intron 40.0%
!! AACAAATAGGTGGGTTGCTT+GGG - chr8_1:88584886-88584905 Msa1223960:intron 40.0%
ACATTGTAGACACAAGCACA+CGG - chr8_1:88585008-88585027 Msa1223960:intron 40.0%
TGCCACGTATCAGAATAATG+AGG - chr8_1:88585072-88585091 Msa1223960:intron 40.0%
AGAGGTTGTTCCATTTGGAA+GGG + chr8_1:88585119-88585138 None:intergenic 40.0%
AAGAGGTTGTTCCATTTGGA+AGG + chr8_1:88585120-88585139 None:intergenic 40.0%
TCCAAATGGAACAACCTCTT+TGG - chr8_1:88585120-88585139 Msa1223960:intron 40.0%
ACCAAAGAGGTTGTTCCATT+TGG + chr8_1:88585124-88585143 None:intergenic 40.0%
! CAACCTCTTTGGTTCATGTA+TGG - chr8_1:88585131-88585150 Msa1223960:intron 40.0%
TTGCCATACATGAACCAAAG+AGG + chr8_1:88585137-88585156 None:intergenic 40.0%
TTGGTTCATGTATGGCAAGA+TGG - chr8_1:88585139-88585158 Msa1223960:intron 40.0%
TGGTTCATGTATGGCAAGAT+GGG - chr8_1:88585140-88585159 Msa1223960:intron 40.0%
GATTCATGGCTATGTTCTTG+AGG + chr8_1:88585187-88585206 None:intergenic 40.0%
! CCAAGACTTCCTTAGAGTTT+TGG + chr8_1:88585216-88585235 None:intergenic 40.0%
! CCAAAACTCTAAGGAAGTCT+TGG - chr8_1:88585213-88585232 Msa1223960:intron 40.0%
! GAAGTCTTGGATCTTGTTTC+TGG - chr8_1:88585226-88585245 Msa1223960:intron 40.0%
!! TGTAAGTACCAAGTTGGTGT+TGG + chr8_1:88585711-88585730 None:intergenic 40.0%
! AGGGACGATTCTTGTTTGAT+TGG - chr8_1:88585780-88585799 Msa1223960:CDS 40.0%
TGTGAAGATAGAACCAAGCA+GGG + chr8_1:88585935-88585954 None:intergenic 40.0%
ATGTGAAGATAGAACCAAGC+AGG + chr8_1:88585936-88585955 None:intergenic 40.0%
AGTGAGTGATCCACTAATCT+TGG - chr8_1:88586162-88586181 Msa1223960:intron 40.0%
TGCCGCAACTGGATATAATT+TGG + chr8_1:88586277-88586296 None:intergenic 40.0%
AGCAATCAAGTATGCTGAGT+CGG - chr8_1:88586317-88586336 Msa1223960:intron 40.0%
ATCTCCTATGTCATCCCTAT+CGG + chr8_1:88586384-88586403 None:intergenic 40.0%
ATAGGGATGACATAGGAGAT+AGG - chr8_1:88586384-88586403 Msa1223960:intron 40.0%
TTGTTTCATCGTATGACCAG+TGG + chr8_1:88584823-88584842 None:intergenic 40.0%
TGGTCATACGATGAAACAAG+TGG - chr8_1:88584824-88584843 Msa1223960:intron 40.0%
GACATAGCATACATACACAC+TGG - chr8_1:88584854-88584873 Msa1223960:intron 40.0%
!! AACAAATAGGTGGGTTGCTT+GGG - chr8_1:88584886-88584905 Msa1223960:intron 40.0%
ACATTGTAGACACAAGCACA+CGG - chr8_1:88585008-88585027 Msa1223960:intron 40.0%
TGCCACGTATCAGAATAATG+AGG - chr8_1:88585072-88585091 Msa1223960:intron 40.0%
AGAGGTTGTTCCATTTGGAA+GGG + chr8_1:88585119-88585138 None:intergenic 40.0%
AAGAGGTTGTTCCATTTGGA+AGG + chr8_1:88585120-88585139 None:intergenic 40.0%
TCCAAATGGAACAACCTCTT+TGG - chr8_1:88585120-88585139 Msa1223960:intron 40.0%
ACCAAAGAGGTTGTTCCATT+TGG + chr8_1:88585124-88585143 None:intergenic 40.0%
! CAACCTCTTTGGTTCATGTA+TGG - chr8_1:88585131-88585150 Msa1223960:intron 40.0%
TTGCCATACATGAACCAAAG+AGG + chr8_1:88585137-88585156 None:intergenic 40.0%
TTGGTTCATGTATGGCAAGA+TGG - chr8_1:88585139-88585158 Msa1223960:intron 40.0%
TGGTTCATGTATGGCAAGAT+GGG - chr8_1:88585140-88585159 Msa1223960:intron 40.0%
GATTCATGGCTATGTTCTTG+AGG + chr8_1:88585187-88585206 None:intergenic 40.0%
! CCAAGACTTCCTTAGAGTTT+TGG + chr8_1:88585216-88585235 None:intergenic 40.0%
! CCAAAACTCTAAGGAAGTCT+TGG - chr8_1:88585213-88585232 Msa1223960:intron 40.0%
! GAAGTCTTGGATCTTGTTTC+TGG - chr8_1:88585226-88585245 Msa1223960:intron 40.0%
!! TGTAAGTACCAAGTTGGTGT+TGG + chr8_1:88585711-88585730 None:intergenic 40.0%
! AGGGACGATTCTTGTTTGAT+TGG - chr8_1:88585780-88585799 Msa1223960:CDS 40.0%
TGTGAAGATAGAACCAAGCA+GGG + chr8_1:88585935-88585954 None:intergenic 40.0%
ATGTGAAGATAGAACCAAGC+AGG + chr8_1:88585936-88585955 None:intergenic 40.0%
AGTGAGTGATCCACTAATCT+TGG - chr8_1:88586162-88586181 Msa1223960:intron 40.0%
TGCCGCAACTGGATATAATT+TGG + chr8_1:88586277-88586296 None:intergenic 40.0%
AGCAATCAAGTATGCTGAGT+CGG - chr8_1:88586317-88586336 Msa1223960:intron 40.0%
ATCTCCTATGTCATCCCTAT+CGG + chr8_1:88586384-88586403 None:intergenic 40.0%
ATAGGGATGACATAGGAGAT+AGG - chr8_1:88586384-88586403 Msa1223960:intron 40.0%
ACATGATTGGGTTTGAGCTG+AGG + chr8_1:88584729-88584748 None:intergenic 45.0%
TTTCATCGTATGACCAGTGG+AGG + chr8_1:88584820-88584839 None:intergenic 45.0%
!! CAACAAATAGGTGGGTTGCT+TGG - chr8_1:88584885-88584904 Msa1223960:intron 45.0%
! ATATGCTTTTGGGCTTCCAC+TGG + chr8_1:88584981-88585000 None:intergenic 45.0%
! GCTACTTTGACCCTTCCAAA+TGG - chr8_1:88585106-88585125 Msa1223960:intron 45.0%
GGTTCATGTATGGCAAGATG+GGG - chr8_1:88585141-88585160 Msa1223960:intron 45.0%
GTGTCGCATAGATACCAAAC+AGG + chr8_1:88585633-88585652 None:intergenic 45.0%
!! AGTACCAAGTTGGTGTTGGT+CGG + chr8_1:88585707-88585726 None:intergenic 45.0%
!! CTTGCTATTACTGCTCCTGT+TGG + chr8_1:88585885-88585904 None:intergenic 45.0%
CAACAGGAGCAGTAATAGCA+AGG - chr8_1:88585883-88585902 Msa1223960:intron 45.0%
TGGTTCTTCGAACACTAGGT+TGG - chr8_1:88586417-88586436 Msa1223960:CDS 45.0%
ATGGTTGAGCAAAAGCTCCA+GGG + chr8_1:88586887-88586906 None:intergenic 45.0%
! CTTTTGCTCAACCATGACGA+TGG - chr8_1:88586892-88586911 Msa1223960:CDS 45.0%
! CTTTTGCTCAAACACGACGA+TGG - chr8_1:88586917-88586936 Msa1223960:CDS 45.0%
! CTTTTGCTCAAACACGACGA+TGG - chr8_1:88586917-88586936 Msa1223960:CDS 45.0%
ACATGATTGGGTTTGAGCTG+AGG + chr8_1:88584729-88584748 None:intergenic 45.0%
TTTCATCGTATGACCAGTGG+AGG + chr8_1:88584820-88584839 None:intergenic 45.0%
!! CAACAAATAGGTGGGTTGCT+TGG - chr8_1:88584885-88584904 Msa1223960:intron 45.0%
! ATATGCTTTTGGGCTTCCAC+TGG + chr8_1:88584981-88585000 None:intergenic 45.0%
! GCTACTTTGACCCTTCCAAA+TGG - chr8_1:88585106-88585125 Msa1223960:intron 45.0%
GGTTCATGTATGGCAAGATG+GGG - chr8_1:88585141-88585160 Msa1223960:intron 45.0%
GTGTCGCATAGATACCAAAC+AGG + chr8_1:88585633-88585652 None:intergenic 45.0%
!! AGTACCAAGTTGGTGTTGGT+CGG + chr8_1:88585707-88585726 None:intergenic 45.0%
!! CTTGCTATTACTGCTCCTGT+TGG + chr8_1:88585885-88585904 None:intergenic 45.0%
CAACAGGAGCAGTAATAGCA+AGG - chr8_1:88585883-88585902 Msa1223960:intron 45.0%
TGGTTCTTCGAACACTAGGT+TGG - chr8_1:88586417-88586436 Msa1223960:CDS 45.0%
ATGGTTGAGCAAAAGCTCCA+GGG + chr8_1:88586887-88586906 None:intergenic 45.0%
! CTTTTGCTCAACCATGACGA+TGG - chr8_1:88586892-88586911 Msa1223960:CDS 45.0%
! CTTTTGCTCAAACACGACGA+TGG - chr8_1:88586917-88586936 Msa1223960:CDS 45.0%
! CTTTTGCTCAAACACGACGA+TGG - chr8_1:88586917-88586936 Msa1223960:CDS 45.0%
!! ATAATATTAGTTAATTAATA+AGG - chr8_1:88586534-88586553 Msa1223960:CDS 5.0%
!! ATAATATTAGTTAATTAATA+AGG - chr8_1:88586534-88586553 Msa1223960:CDS 5.0%
! TGGAGGTACGAGGTTAACTG+TGG + chr8_1:88584803-88584822 None:intergenic 50.0%
AGTTAACCTCGTACCTCCAC+TGG - chr8_1:88584804-88584823 Msa1223960:intron 50.0%
!! AAGGGTGCTGCTTGGATTGA+TGG + chr8_1:88584912-88584931 None:intergenic 50.0%
CAAAGCTTGTGCTCCGATCA+TGG + chr8_1:88584942-88584961 None:intergenic 50.0%
CATGATCGGAGCACAAGCTT+TGG - chr8_1:88584940-88584959 Msa1223960:intron 50.0%
ACAAGCACACGGTTGCAAGA+AGG - chr8_1:88585019-88585038 Msa1223960:intron 50.0%
GTGGCAGACAAACCAGAAAC+AGG + chr8_1:88585058-88585077 None:intergenic 50.0%
ACCAATCCCACTTGCAGCTT+GGG + chr8_1:88585257-88585276 None:intergenic 50.0%
AACCAATCCCACTTGCAGCT+TGG + chr8_1:88585258-88585277 None:intergenic 50.0%
CGGACTACACTAACACGTGT+TGG + chr8_1:88585687-88585706 None:intergenic 50.0%
TAGTCCGACCAACACCAACT+TGG - chr8_1:88585700-88585719 Msa1223960:intron 50.0%
TGGGGAATCTTGATGCCAAC+AGG - chr8_1:88585867-88585886 Msa1223960:intron 50.0%
ATAGAACCAAGCAGGGTCTG+CGG + chr8_1:88585928-88585947 None:intergenic 50.0%
GAGTATAAGGTTGCCGCAAC+TGG + chr8_1:88586288-88586307 None:intergenic 50.0%
ATCCCTATCGGACCATTGCT+GGG + chr8_1:88586372-88586391 None:intergenic 50.0%
TGGTCCGATAGGGATGACAT+AGG - chr8_1:88586377-88586396 Msa1223960:intron 50.0%
CATGGTTGAGCAAAAGCTCC+AGG + chr8_1:88586888-88586907 None:intergenic 50.0%
GAGCAAAAGCTCCATCGTCA+TGG + chr8_1:88586906-88586925 None:intergenic 50.0%
! CTTTTGCTCAACCACGACGA+TGG - chr8_1:88586942-88586961 Msa1223960:CDS 50.0%
! TGGAGGTACGAGGTTAACTG+TGG + chr8_1:88584803-88584822 None:intergenic 50.0%
AGTTAACCTCGTACCTCCAC+TGG - chr8_1:88584804-88584823 Msa1223960:intron 50.0%
!! AAGGGTGCTGCTTGGATTGA+TGG + chr8_1:88584912-88584931 None:intergenic 50.0%
CAAAGCTTGTGCTCCGATCA+TGG + chr8_1:88584942-88584961 None:intergenic 50.0%
CATGATCGGAGCACAAGCTT+TGG - chr8_1:88584940-88584959 Msa1223960:intron 50.0%
ACAAGCACACGGTTGCAAGA+AGG - chr8_1:88585019-88585038 Msa1223960:intron 50.0%
GTGGCAGACAAACCAGAAAC+AGG + chr8_1:88585058-88585077 None:intergenic 50.0%
ACCAATCCCACTTGCAGCTT+GGG + chr8_1:88585257-88585276 None:intergenic 50.0%
AACCAATCCCACTTGCAGCT+TGG + chr8_1:88585258-88585277 None:intergenic 50.0%
CGGACTACACTAACACGTGT+TGG + chr8_1:88585687-88585706 None:intergenic 50.0%
TAGTCCGACCAACACCAACT+TGG - chr8_1:88585700-88585719 Msa1223960:intron 50.0%
TGGGGAATCTTGATGCCAAC+AGG - chr8_1:88585867-88585886 Msa1223960:intron 50.0%
ATAGAACCAAGCAGGGTCTG+CGG + chr8_1:88585928-88585947 None:intergenic 50.0%
GAGTATAAGGTTGCCGCAAC+TGG + chr8_1:88586288-88586307 None:intergenic 50.0%
ATCCCTATCGGACCATTGCT+GGG + chr8_1:88586372-88586391 None:intergenic 50.0%
TGGTCCGATAGGGATGACAT+AGG - chr8_1:88586377-88586396 Msa1223960:intron 50.0%
CATGGTTGAGCAAAAGCTCC+AGG + chr8_1:88586888-88586907 None:intergenic 50.0%
GAGCAAAAGCTCCATCGTCA+TGG + chr8_1:88586906-88586925 None:intergenic 50.0%
! CTTTTGCTCAACCACGACGA+TGG - chr8_1:88586942-88586961 Msa1223960:CDS 50.0%
! GTATGACCAGTGGAGGTACG+AGG + chr8_1:88584813-88584832 None:intergenic 55.0%
ACCCTTGACCCAGCCATGAT+CGG - chr8_1:88584926-88584945 Msa1223960:intron 55.0%
TCCGATCATGGCTGGGTCAA+GGG + chr8_1:88584930-88584949 None:intergenic 55.0%
CTTGTGCTCCGATCATGGCT+GGG + chr8_1:88584937-88584956 None:intergenic 55.0%
! GATCGGAGCACAAGCTTTGG+TGG - chr8_1:88584943-88584962 Msa1223960:intron 55.0%
GTGGCTATTCCACAAGCCAG+TGG - chr8_1:88584962-88584981 Msa1223960:intron 55.0%
!! TTTGGGCTTCCACTGGCTTG+TGG + chr8_1:88584974-88584993 None:intergenic 55.0%
GTACCTCCCAAGCTGCAAGT+GGG - chr8_1:88585248-88585267 Msa1223960:intron 55.0%
AATCCCACTTGCAGCTTGGG+AGG + chr8_1:88585254-88585273 None:intergenic 55.0%
TCCCAAGCTGCAAGTGGGAT+TGG - chr8_1:88585253-88585272 Msa1223960:intron 55.0%
TCAAATCCGCAGACCCTGCT+TGG - chr8_1:88585919-88585938 Msa1223960:intron 55.0%
TTCCCCAGCAATGGTCCGAT+AGG - chr8_1:88586366-88586385 Msa1223960:intron 55.0%
TCCCCAGCAATGGTCCGATA+GGG - chr8_1:88586367-88586386 Msa1223960:intron 55.0%
TCCCTATCGGACCATTGCTG+GGG + chr8_1:88586371-88586390 None:intergenic 55.0%
CATCCCTATCGGACCATTGC+TGG + chr8_1:88586373-88586392 None:intergenic 55.0%
ATAGATGAGGGCTCATGCCC+TGG - chr8_1:88586867-88586886 Msa1223960:CDS 55.0%
GAGCAAAAGCTCCATCGTCG+TGG + chr8_1:88586931-88586950 None:intergenic 55.0%
! GTATGACCAGTGGAGGTACG+AGG + chr8_1:88584813-88584832 None:intergenic 55.0%
ACCCTTGACCCAGCCATGAT+CGG - chr8_1:88584926-88584945 Msa1223960:intron 55.0%
TCCGATCATGGCTGGGTCAA+GGG + chr8_1:88584930-88584949 None:intergenic 55.0%
CTTGTGCTCCGATCATGGCT+GGG + chr8_1:88584937-88584956 None:intergenic 55.0%
! GATCGGAGCACAAGCTTTGG+TGG - chr8_1:88584943-88584962 Msa1223960:intron 55.0%
GTGGCTATTCCACAAGCCAG+TGG - chr8_1:88584962-88584981 Msa1223960:intron 55.0%
!! TTTGGGCTTCCACTGGCTTG+TGG + chr8_1:88584974-88584993 None:intergenic 55.0%
GTACCTCCCAAGCTGCAAGT+GGG - chr8_1:88585248-88585267 Msa1223960:intron 55.0%
AATCCCACTTGCAGCTTGGG+AGG + chr8_1:88585254-88585273 None:intergenic 55.0%
TCCCAAGCTGCAAGTGGGAT+TGG - chr8_1:88585253-88585272 Msa1223960:intron 55.0%
TCAAATCCGCAGACCCTGCT+TGG - chr8_1:88585919-88585938 Msa1223960:intron 55.0%
TTCCCCAGCAATGGTCCGAT+AGG - chr8_1:88586366-88586385 Msa1223960:intron 55.0%
TCCCCAGCAATGGTCCGATA+GGG - chr8_1:88586367-88586386 Msa1223960:intron 55.0%
TCCCTATCGGACCATTGCTG+GGG + chr8_1:88586371-88586390 None:intergenic 55.0%
CATCCCTATCGGACCATTGC+TGG + chr8_1:88586373-88586392 None:intergenic 55.0%
ATAGATGAGGGCTCATGCCC+TGG - chr8_1:88586867-88586886 Msa1223960:CDS 55.0%
GAGCAAAAGCTCCATCGTCG+TGG + chr8_1:88586931-88586950 None:intergenic 55.0%
CTCCGATCATGGCTGGGTCA+AGG + chr8_1:88584931-88584950 None:intergenic 60.0%
GCTTGTGCTCCGATCATGGC+TGG + chr8_1:88584938-88584957 None:intergenic 60.0%
GGTACCTCCCAAGCTGCAAG+TGG - chr8_1:88585247-88585266 Msa1223960:intron 60.0%
CTCCGATCATGGCTGGGTCA+AGG + chr8_1:88584931-88584950 None:intergenic 60.0%
GCTTGTGCTCCGATCATGGC+TGG + chr8_1:88584938-88584957 None:intergenic 60.0%
GGTACCTCCCAAGCTGCAAG+TGG - chr8_1:88585247-88585266 Msa1223960:intron 60.0%
!! GCTGGGTCAAGGGTGCTGCT+TGG + chr8_1:88584920-88584939 None:intergenic 65.0%
!! GCTGGGTCAAGGGTGCTGCT+TGG + chr8_1:88584920-88584939 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 88584674 88587008 88584674 ID=Msa1223960;Name=Msa1223960
chr8_1 mRNA 88584674 88587008 88584674 ID=Msa1223960-mRNA-1;Parent=Msa1223960;Name=Msa1223960-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.66|1|1|3|0|278
chr8_1 exon 88586385 88587008 88586385 ID=Msa1223960-mRNA-1:exon:32170;Parent=Msa1223960-mRNA-1
chr8_1 exon 88585768 88585842 88585768 ID=Msa1223960-mRNA-1:exon:32169;Parent=Msa1223960-mRNA-1
chr8_1 exon 88584674 88584811 88584674 ID=Msa1223960-mRNA-1:exon:32168;Parent=Msa1223960-mRNA-1
chr8_1 CDS 88586385 88587008 88586385 ID=Msa1223960-mRNA-1:cds;Parent=Msa1223960-mRNA-1
chr8_1 CDS 88585768 88585842 88585768 ID=Msa1223960-mRNA-1:cds;Parent=Msa1223960-mRNA-1
chr8_1 CDS 88584674 88584811 88584674 ID=Msa1223960-mRNA-1:cds;Parent=Msa1223960-mRNA-1
Gene Sequence

>Msa1223960

ATGTTGAGGCTTACGTTGGCCTTGTGTGTTTTGAGTAGCATAATTTTGACATCCTCAGCTCAAACCCAATCATGTAAAAACCAAACATTCTCAAACAACAAAGCATTCACAACATGTCGTGATCTTCCACAGTTAACCTCGTACCTCCACTGGTCATACGATGAAACAAGTGGCAAATTAGACATAGCATACATACACACTGGAATAACTGCAACAAATAGGTGGGTTGCTTGGGCCATCAATCCAAGCAGCACCCTTGACCCAGCCATGATCGGAGCACAAGCTTTGGTGGCTATTCCACAAGCCAGTGGAAGCCCAAAAGCATATACTTCAAACATTGTAGACACAAGCACACGGTTGCAAGAAGGATCCATTAGTTATCCTGTTTCTGGTTTGTCTGCCACGTATCAGAATAATGAGGTTACTATTTTTGCTACTTTGACCCTTCCAAATGGAACAACCTCTTTGGTTCATGTATGGCAAGATGGGGTTCTCTCTTCTGATACTACTCCTCAAGAACATAGCCATGAATCTTCTCACCAAAACTCTAAGGAAGTCTTGGATCTTGTTTCTGGTACCTCCCAAGCTGCAAGTGGGATTGGTTCGCGTCAAAGAAGAAGAAATACACATGGAGTTCTAAATGCAATAAGTTGGGGAATCTTGATGCCAACAGGAGCAGTAATAGCAAGGTATTTGAAGATGAGGGCTCATGCCCTGGAGCTTTTGCTCAACCATGACGATGGAGCTTTTGCTCAAACACGACGATGGAGCTTTTGCTCAACCACGACGATGGAGCTTTTGCTCAAACACGACGATGGAGCTTTTGCTCAACCATGA

Protein sequence

>Msa1223960

MLRLTLALCVLSSIILTSSAQTQSCKNQTFSNNKAFTTCRDLPQLTSYLHWSYDETSGKLDIAYIHTGITATNRWVAWAINPSSTLDPAMIGAQALVAIPQASGSPKAYTSNIVDTSTRLQEGSISYPVSGLSATYQNNEVTIFATLTLPNGTTSLVHVWQDGVLSSDTTPQEHSHESSHQNSKEVLDLVSGTSQAASGIGSRQRRRNTHGVLNAISWGILMPTGAVIARYLKMRAHALELLLNHDDGAFAQTRRWSFCSTTTMELLLKHDDGAFAQP*