AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1175990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175990 MtrunA17_Chr8g0346011 93.594 281 16 2 3 282 15 294 0.0 502
Msa1175990 MtrunA17_Chr3g0144311 56.000 200 72 9 18 209 23 214 2.30e-56 182
Msa1175990 MtrunA17_Chr4g0017401 45.725 269 111 10 9 247 1 264 8.21e-51 168
Msa1175990 MtrunA17_Chr3g0127751 52.000 175 75 6 1 170 1 171 7.71e-48 159
Msa1175990 MtrunA17_Chr5g0426311 77.011 87 20 0 15 101 7 93 1.58e-45 155
Msa1175990 MtrunA17_Chr7g0276531 63.636 99 34 1 9 105 1 99 1.70e-41 143
Msa1175990 MtrunA17_Chr4g0045921 48.810 84 43 0 20 103 72 155 5.33e-19 85.5
Msa1175990 MtrunA17_Chr8g0360551 42.857 98 56 0 5 102 54 151 7.46e-19 85.9
Msa1175990 MtrunA17_Chr2g0290191 36.066 122 74 2 25 143 5 125 1.61e-18 85.1
Msa1175990 MtrunA17_Chr3g0101061 41.250 80 46 1 13 92 29 107 2.12e-17 82.0
Msa1175990 MtrunA17_Chr7g0255011 43.373 83 47 0 20 102 123 205 3.45e-16 78.2
Msa1175990 MtrunA17_Chr2g0278661 44.000 75 41 1 19 92 2 76 4.33e-16 75.9
Msa1175990 MtrunA17_Chr5g0447761 36.066 122 72 3 25 143 7 125 7.29e-16 77.4
Msa1175990 MtrunA17_Chr5g0440831 42.169 83 48 0 20 102 161 243 9.15e-16 77.0
Msa1175990 MtrunA17_Chr4g0035051 43.421 76 42 1 25 99 9 84 7.31e-15 69.7
Msa1175990 MtrunA17_Chr4g0050781 41.250 80 40 2 14 92 3 76 1.64e-14 70.9
Msa1175990 MtrunA17_Chr1g0186351 36.250 80 50 1 20 99 2 80 3.68e-14 72.0
Msa1175990 MtrunA17_Chr4g0035001 43.590 78 39 2 25 99 7 82 7.13e-14 68.2
Msa1175990 MtrunA17_Chr3g0121631 40.580 69 41 0 24 92 36 104 7.22e-14 67.4
Msa1175990 MtrunA17_Chr4g0061451 41.026 78 45 1 24 100 42 119 1.66e-13 68.9
Msa1175990 MtrunA17_Chr7g0219021 38.961 77 46 1 25 100 41 117 2.96e-13 68.2
Msa1175990 MtrunA17_Chr4g0035031 43.421 76 42 1 25 99 9 84 3.00e-13 67.0
Msa1175990 MtrunA17_Chr4g0031091 45.070 71 38 1 24 93 33 103 3.09e-13 65.1
Msa1175990 MtrunA17_Chr3g0086861 39.024 82 41 2 24 100 44 121 5.97e-13 68.6
Msa1175990 MtrunA17_Chr7g0266751 33.333 99 62 2 25 122 33 128 6.00e-12 62.0
Msa1175990 MtrunA17_Chr3g0119311 34.783 69 41 1 24 92 36 100 1.94e-11 60.5
Msa1175990 MtrunA17_Chr7g0219031 44.444 63 32 1 25 84 41 103 1.95e-11 60.1
Msa1175990 MtrunA17_Chr3g0120721 40.909 66 39 0 25 90 19 84 2.41e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175990 AT2G46780.1 56.031 257 74 11 1 223 1 252 1.33e-75 234
Msa1175990 AT2G46780.2 56.031 257 74 11 1 223 1 252 1.33e-75 234
Msa1175990 AT1G33470.2 55.414 157 63 4 20 170 3 158 1.13e-52 172
Msa1175990 AT1G33470.3 55.063 158 63 5 20 170 3 159 5.70e-51 168
Msa1175990 AT1G33470.1 55.063 158 63 5 20 170 3 159 7.05e-51 167
Msa1175990 AT1G20880.2 50.242 207 79 8 18 209 18 215 3.34e-49 164
Msa1175990 AT1G20880.3 50.242 207 79 8 18 209 18 215 3.34e-49 164
Msa1175990 AT1G20880.1 50.242 207 79 8 18 209 18 215 3.34e-49 164
Msa1175990 AT1G76460.1 47.170 212 78 7 18 209 18 215 1.21e-48 163
Msa1175990 AT1G22910.2 51.899 158 70 3 20 171 9 166 8.95e-45 152
Msa1175990 AT1G22910.1 51.899 158 70 3 20 171 9 166 1.86e-44 151
Msa1175990 AT1G22910.3 51.899 158 70 3 20 171 9 166 9.10e-44 152
Msa1175990 AT1G22330.1 71.765 85 24 0 18 102 11 95 6.77e-40 140
Msa1175990 AT1G78260.1 71.429 84 24 0 18 101 11 94 1.35e-39 140
Msa1175990 AT1G78260.2 71.429 84 24 0 18 101 11 94 3.58e-39 138
Msa1175990 AT3G54770.1 50.000 130 64 1 9 137 1 130 8.70e-39 137
Msa1175990 AT3G54770.3 50.000 130 64 1 9 137 1 130 9.96e-39 137
Msa1175990 AT5G11412.1 63.855 83 30 0 20 102 48 130 8.53e-35 124
Msa1175990 AT3G06970.1 50.442 113 52 2 20 129 8 119 3.47e-31 118
Msa1175990 AT5G53680.1 57.143 84 36 0 20 103 9 92 1.10e-30 113
Msa1175990 AT5G53720.1 57.500 80 34 0 24 103 9 88 2.37e-26 99.8
Msa1175990 AT3G54770.2 51.020 98 37 1 40 137 1 87 6.24e-26 102
Msa1175990 AT2G22090.1 50.602 83 41 0 20 102 100 182 1.08e-19 87.8
Msa1175990 AT2G22090.2 50.602 83 41 0 20 102 100 182 1.11e-19 87.8
Msa1175990 AT5G47620.1 48.529 68 34 1 25 92 7 73 2.24e-17 82.0
Msa1175990 AT5G47620.2 48.529 68 34 1 25 92 7 73 2.24e-17 82.0
Msa1175990 AT5G47620.5 48.529 68 34 1 25 92 7 73 2.24e-17 82.0
Msa1175990 AT5G47620.4 47.826 69 35 1 24 92 6 73 2.60e-17 82.0
Msa1175990 AT3G15010.1 40.816 98 58 0 5 102 56 153 2.60e-17 81.6
Msa1175990 AT3G15010.2 40.816 98 58 0 5 102 56 153 2.60e-17 81.6
Msa1175990 AT5G55550.5 39.726 73 43 1 20 92 2 73 2.09e-16 79.3
Msa1175990 AT5G55550.4 39.726 73 43 1 20 92 2 73 2.09e-16 79.3
Msa1175990 AT5G55550.9 39.726 73 43 1 20 92 2 73 2.09e-16 79.3
Msa1175990 AT5G55550.7 39.726 73 43 1 20 92 2 73 2.09e-16 79.3
Msa1175990 AT5G55550.1 39.726 73 43 1 20 92 2 73 2.09e-16 79.3
Msa1175990 AT5G55550.2 39.726 73 43 1 20 92 2 73 2.14e-16 79.3
Msa1175990 AT5G55550.3 39.726 73 43 1 20 92 2 73 2.14e-16 79.3
Msa1175990 AT5G55550.6 39.726 73 43 1 20 92 2 73 2.14e-16 79.3
Msa1175990 AT5G55550.11 39.726 73 43 1 20 92 2 73 2.14e-16 79.3
Msa1175990 AT5G55550.8 39.726 73 43 1 20 92 2 73 2.23e-16 79.3
Msa1175990 AT5G55550.10 39.726 73 43 1 20 92 2 73 2.57e-16 79.0
Msa1175990 AT4G26650.2 40.278 72 42 1 21 92 9 79 2.91e-16 79.0
Msa1175990 AT4G26650.1 40.278 72 42 1 21 92 12 82 2.99e-16 78.6
Msa1175990 AT3G07810.2 46.479 71 31 2 25 92 7 73 1.29e-15 77.0
Msa1175990 AT3G07810.1 46.479 71 31 2 25 92 7 73 1.30e-15 77.0
Msa1175990 AT2G41060.1 40.964 83 49 0 20 102 124 206 1.65e-15 76.6
Msa1175990 AT2G41060.3 40.964 83 49 0 20 102 124 206 1.65e-15 76.6
Msa1175990 AT2G41060.2 40.964 83 49 0 20 102 124 206 1.65e-15 76.6
Msa1175990 AT4G13850.4 44.444 72 36 1 24 95 35 102 2.06e-15 71.6
Msa1175990 AT4G13850.3 44.444 72 36 1 24 95 35 102 2.79e-15 71.6
Msa1175990 AT4G39260.2 43.421 76 42 1 25 99 7 82 2.91e-15 71.2
Msa1175990 AT3G56860.9 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT3G56860.11 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT3G56860.8 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT3G56860.5 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT3G56860.7 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT3G56860.2 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT3G56860.6 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT3G56860.10 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT3G56860.3 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT3G56860.1 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT3G56860.4 42.169 83 48 0 20 102 136 218 3.09e-15 75.9
Msa1175990 AT2G19380.1 44.444 81 45 0 20 100 404 484 3.39e-15 75.9
Msa1175990 AT4G13850.2 44.444 72 36 1 24 95 35 102 3.42e-15 71.6
Msa1175990 AT4G13850.1 44.444 72 36 1 24 95 35 102 3.83e-15 71.6
Msa1175990 AT3G23830.2 41.026 78 45 1 24 100 35 112 4.31e-15 70.9
Msa1175990 AT3G23830.1 41.026 78 45 1 24 100 35 112 4.31e-15 70.9
Msa1175990 AT4G39260.3 43.421 76 42 1 25 99 7 82 4.56e-15 69.7
Msa1175990 AT4G14300.1 41.250 80 46 1 20 99 2 80 5.25e-15 75.1
Msa1175990 AT4G14300.2 41.250 80 46 1 20 99 2 80 5.25e-15 75.1
Msa1175990 AT2G22100.1 44.156 77 43 0 20 96 159 235 6.40e-15 74.7
Msa1175990 AT4G39260.1 43.421 76 42 1 25 99 7 82 7.71e-15 71.2
Msa1175990 AT1G17640.2 44.444 72 39 1 25 96 67 137 8.79e-15 73.9
Msa1175990 AT1G17640.1 44.444 72 39 1 25 96 67 137 8.79e-15 73.9
Msa1175990 AT1G17640.3 44.444 72 39 1 25 96 67 137 8.79e-15 73.9
Msa1175990 AT4G39260.4 50.943 53 26 0 25 77 7 59 2.02e-14 68.2
Msa1175990 AT2G21660.2 42.105 76 43 1 25 99 9 84 2.70e-14 69.3
Msa1175990 AT2G33410.1 41.333 75 43 1 25 99 7 80 2.76e-14 72.8
Msa1175990 AT2G21660.1 42.105 76 43 1 25 99 9 84 3.83e-14 69.3
Msa1175990 AT5G61030.2 43.478 69 35 1 24 92 40 104 2.28e-13 69.3
Msa1175990 AT5G61030.1 43.478 69 35 1 24 92 40 104 2.28e-13 69.3
Msa1175990 AT1G74230.1 41.558 77 45 0 24 100 34 110 2.50e-13 69.3
Msa1175990 AT1G18630.1 39.785 93 49 3 5 92 15 105 4.38e-13 65.9
Msa1175990 AT3G26420.1 45.614 57 31 0 25 81 8 64 4.68e-13 67.8
Msa1175990 AT5G59865.1 51.020 49 24 0 24 72 26 74 1.78e-11 60.5
Msa1175990 AT1G58470.2 39.189 74 41 1 25 94 7 80 2.74e-11 63.5
Msa1175990 AT1G58470.1 39.189 74 41 1 25 94 7 80 2.74e-11 63.5
Msa1175990 AT1G22910.4 37.037 108 62 3 70 171 8 115 4.04e-11 61.6

Find 113 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCCTTCTGTTGGAGCTTC+TGG 0.055135 8_1:+7615624 Msa1175990:CDS
CATAGTAAGGGTACATATTT+TGG 0.172442 8_1:-7615662 None:intergenic
TAACCCTCCAACAAATATTT+TGG 0.186878 8_1:-7614124 None:intergenic
GCTGAGGCAAAACTGGAATT+TGG 0.187376 8_1:-7615743 None:intergenic
AACTGGAATTTGGGTCATTT+GGG 0.205081 8_1:-7615733 None:intergenic
TCATTCTCTCATATTGTCTT+TGG 0.218377 8_1:+7613976 Msa1175990:five_prime_UTR
TCTAATTGACCAATCAATAA+AGG 0.228559 8_1:-7617058 None:intergenic
TATTTATCTGACAGATATTC+TGG 0.249082 8_1:+7615051 Msa1175990:intron
AGTATCCATGGTCATGGTTT+TGG 0.271120 8_1:+7615699 Msa1175990:CDS
AGCTTCTGGGGCAATGGGTT+TGG 0.272297 8_1:+7615638 Msa1175990:CDS
AATGATTTCCTTTCTGTTAA+GGG 0.282979 8_1:+7613782 Msa1175990:five_prime_UTR
CCAAAATGCTGAGGCAAAAC+TGG 0.286123 8_1:-7615750 None:intergenic
AAACTGGAATTTGGGTCATT+TGG 0.293455 8_1:-7615734 None:intergenic
TAATGATTTCCTTTCTGTTA+AGG 0.312203 8_1:+7613781 Msa1175990:five_prime_UTR
ACATTTCCTTATTCAGCATA+TGG 0.317744 8_1:+7614928 Msa1175990:CDS
ATCCTTCTGTTGGAGCTTCT+GGG 0.321902 8_1:+7615625 Msa1175990:CDS
AGTTACCCATATGCTGAATA+AGG 0.334120 8_1:-7614934 None:intergenic
GTTATCACTGATAAGTATAC+TGG 0.334320 8_1:+7614216 Msa1175990:CDS
TGTTGGAGCTTCTGGGGCAA+TGG 0.334769 8_1:+7615632 Msa1175990:CDS
GCTCTTCTTCCATCAATAAC+TGG 0.337494 8_1:-7614442 None:intergenic
TCAACTATTGATTATGTCTT+GGG 0.337812 8_1:+7616951 Msa1175990:three_prime_UTR
CAGAACTATTACAATGTCTA+TGG 0.345598 8_1:+7615579 Msa1175990:intron
TTGAGCTTCGGTAGCTCAAT+AGG 0.349937 8_1:+7617090 Msa1175990:three_prime_UTR
GAATCTAATTATTTAAGCTT+TGG 0.354613 8_1:+7616908 Msa1175990:three_prime_UTR
CTAATTGACCAATCAATAAA+GGG 0.356198 8_1:-7617057 None:intergenic
TCTTTGAACCCTTTATTGAT+TGG 0.357423 8_1:+7617049 Msa1175990:three_prime_UTR
AGAATTATTACCAGCACTAA+TGG 0.360267 8_1:-7615817 None:intergenic
TAATTGAAAAGAAAATATTA+AGG 0.361503 8_1:+7617181 Msa1175990:three_prime_UTR
CAAAATATGTACCCTTACTA+TGG 0.370998 8_1:+7615663 Msa1175990:CDS
TACCAATGTTGTGGAATCTT+AGG 0.371330 8_1:+7613805 Msa1175990:five_prime_UTR
GTTGGAGCTTCTGGGGCAAT+GGG 0.372650 8_1:+7615633 Msa1175990:CDS
AATGGTGTGCAGGAAGGTTT+AGG 0.381511 8_1:+7614827 Msa1175990:intron
ACTGGGAGATCTAAAGGTTA+TGG 0.382688 8_1:+7614234 Msa1175990:CDS
AATAGTTGAATTACTCTAGA+AGG 0.392515 8_1:-7616937 None:intergenic
AAAGAACATTGCTTGGTTGA+TGG 0.392785 8_1:-7613697 None:intergenic
CTGAGGCAAAACTGGAATTT+GGG 0.394905 8_1:-7615742 None:intergenic
TTCAACTATTGATTATGTCT+TGG 0.400574 8_1:+7616950 Msa1175990:three_prime_UTR
TAAATGTTGTGTCATTATAT+TGG 0.402817 8_1:-7614101 None:intergenic
ACATTTACCAAAATATTTGT+TGG 0.412578 8_1:+7614117 Msa1175990:CDS
AATCCATCTCCAGTTATTGA+TGG 0.412922 8_1:+7614433 Msa1175990:CDS
ACAAAGGACTATTATGTCAT+TGG 0.417513 8_1:-7616986 None:intergenic
TATTTGTTGGAGGGTTAGCT+TGG 0.423354 8_1:+7614130 Msa1175990:CDS
AAGAACATTGCTTGGTTGAT+GGG 0.431421 8_1:-7613696 None:intergenic
TATTACCAGCACTAATGGTT+GGG 0.433671 8_1:-7615812 None:intergenic
TGTGCATATTGACCATAGTA+AGG 0.433964 8_1:-7615675 None:intergenic
CATTTCCTTATTCAGCATAT+GGG 0.440818 8_1:+7614929 Msa1175990:CDS
TGTACTGCCTAGTGGGTTGA+TGG 0.442879 8_1:-7614906 None:intergenic
ATGAATTGAGAATGTTGTTA+AGG 0.444795 8_1:-7616766 None:intergenic
AATTGCAATATTGCTTCTCT+TGG 0.445540 8_1:+7614466 Msa1175990:CDS
TTGTTACCACTCACCATATG+AGG 0.446616 8_1:-7614072 None:intergenic
ATTTGTTGGAGGGTTAGCTT+GGG 0.450733 8_1:+7614131 Msa1175990:CDS
GTACAATCAGTTCCTTATCA+TGG 0.451060 8_1:+7614865 Msa1175990:CDS
TCAACAAAGACAACCTCATA+TGG 0.453555 8_1:+7614059 Msa1175990:CDS
TACTACAAAAGAACATTGCT+TGG 0.459545 8_1:-7613704 None:intergenic
AGAAAGTAAAAGTTGAGCTT+CGG 0.469248 8_1:+7617078 Msa1175990:three_prime_UTR
TCACCTTACTATCCTTCTGT+TGG 0.471067 8_1:+7615615 Msa1175990:CDS
ATTGAGAATGTTGTTAAGGT+TGG 0.472361 8_1:-7616762 None:intergenic
GCTCCAACAGAAGGATAGTA+AGG 0.482209 8_1:-7615618 None:intergenic
CATGCTCTTATAGCTGCCTC+TGG 0.486338 8_1:-7614406 None:intergenic
GCTGGTCCTTCACAAGCCTC+TGG 0.489668 8_1:+7616676 Msa1175990:CDS
AAGTATACTGGGAGATCTAA+AGG 0.490906 8_1:+7614228 Msa1175990:CDS
CTTCCATCAATAACTGGAGA+TGG 0.499114 8_1:-7614436 None:intergenic
ATTGATTATGTCTTGGGTGT+TGG 0.508098 8_1:+7616957 Msa1175990:three_prime_UTR
GATCATATTCATTCATGCAT+AGG 0.512136 8_1:+7616882 Msa1175990:three_prime_UTR
TGTTAAGGGTACCAATGTTG+TGG 0.513695 8_1:+7613796 Msa1175990:five_prime_UTR
ATCATATTCATTCATGCATA+GGG 0.513955 8_1:+7616883 Msa1175990:three_prime_UTR
TTATTACCAGCACTAATGGT+TGG 0.519138 8_1:-7615813 None:intergenic
CCAGCCCTTGTTACTGCCAC+AGG 0.522193 8_1:-7616658 None:intergenic
TTTACCAAAATATTTGTTGG+AGG 0.522261 8_1:+7614120 Msa1175990:CDS
TCCTTCTGTTGGAGCTTCTG+GGG 0.522825 8_1:+7615626 Msa1175990:CDS
TGTTGTGGAATCTTAGGAAG+AGG 0.530625 8_1:+7613811 Msa1175990:five_prime_UTR
CAGCACCTGTGGCAGTAACA+AGG 0.532377 8_1:+7616653 Msa1175990:CDS
AACATTCTACATCTTGATCA+TGG 0.532848 8_1:+7616716 Msa1175990:exon
GGTTAGCTTGGGAAACTCAA+AGG 0.538530 8_1:+7614142 Msa1175990:CDS
AGGAAATGTGTACTGCCTAG+TGG 0.539088 8_1:-7614914 None:intergenic
TGCTGCTATTGTAGTAGTTG+TGG 0.540042 8_1:-7616635 None:intergenic
GTGGATGAAGAACCATGATA+AGG 0.546300 8_1:-7614877 None:intergenic
TTGTTCAGTATCTGTTCCAG+AGG 0.547325 8_1:-7616692 None:intergenic
TTACCAAAATATTTGTTGGA+GGG 0.548943 8_1:+7614121 Msa1175990:CDS
GTTGGGATTGCAACTGAAGA+AGG 0.551412 8_1:-7615795 None:intergenic
CAATATGCACAAAGTATCCA+TGG 0.551625 8_1:+7615687 Msa1175990:CDS
CCTGTGGCAGTAACAAGGGC+TGG 0.554680 8_1:+7616658 Msa1175990:CDS
GCAATCCCAACCATTAGTGC+TGG 0.558559 8_1:+7615807 Msa1175990:CDS
TTCCTAAGATTCCACAACAT+TGG 0.559486 8_1:-7613807 None:intergenic
CTGGAATTTGGGTCATTTGG+GGG 0.562855 8_1:-7615731 None:intergenic
CATTGGTACCCTTAACAGAA+AGG 0.564116 8_1:-7613790 None:intergenic
TATGATGATCATGGTGATGA+TGG 0.570484 8_1:-7616804 None:intergenic
GCCCCAGAAGCTCCAACAGA+AGG 0.575329 8_1:-7615627 None:intergenic
ATTACTGTCAAAGCAATGAA+AGG 0.581388 8_1:-7613762 None:intergenic
GCACAAAGTATCCATGGTCA+TGG 0.581950 8_1:+7615693 Msa1175990:CDS
ACTGGAATTTGGGTCATTTG+GGG 0.588666 8_1:-7615732 None:intergenic
GTTAGCTTGGGAAACTCAAA+GGG 0.597037 8_1:+7614143 Msa1175990:CDS
AGAACATTGCTTGGTTGATG+GGG 0.597775 8_1:-7613695 None:intergenic
GTGCATATTGACCATAGTAA+GGG 0.598572 8_1:-7615674 None:intergenic
AGCACCTGTGGCAGTAACAA+GGG 0.600833 8_1:+7616654 Msa1175990:CDS
TACTACAATAGCAGCACCTG+TGG 0.605257 8_1:+7616642 Msa1175990:CDS
ATGGTGTCTTACAAGTTACA+AGG 0.617235 8_1:+7616735 Msa1175990:three_prime_UTR
TTATCACTGATAAGTATACT+GGG 0.624818 8_1:+7614217 Msa1175990:CDS
TCTGTTCCAGAGGCTTGTGA+AGG 0.628522 8_1:-7616682 None:intergenic
ATGTACTAAAATATAAACAA+AGG 0.631120 8_1:-7617002 None:intergenic
CGATCACTAACTCTTCAGCA+TGG 0.635608 8_1:+7614502 Msa1175990:CDS
GAACTCCAAAACCATGACCA+TGG 0.639031 8_1:-7615704 None:intergenic
GGAAGGTTTAGGCCTCCACA+TGG 0.645450 8_1:+7614838 Msa1175990:intron
GGAAATGTGTACTGCCTAGT+GGG 0.657310 8_1:-7614913 None:intergenic
AGACAACCTCATATGGTGAG+TGG 0.661054 8_1:+7614066 Msa1175990:CDS
CCTTGTGACCCAAAATGCTG+AGG 0.666097 8_1:-7615759 None:intergenic
GTTTAGGCCTCCACATGGAG+TGG 0.666440 8_1:+7614843 Msa1175990:CDS
GGTGACATTTAAGGATCCAG+AGG 0.676171 8_1:+7614390 Msa1175990:intron
GATTGTACCACTCCATGTGG+AGG 0.680340 8_1:-7614850 None:intergenic
GAACATTGCTTGGTTGATGG+GGG 0.683662 8_1:-7613694 None:intergenic
ACTGATTGTACCACTCCATG+TGG 0.705430 8_1:-7614853 None:intergenic
ACAAGACACATTGTATCCTG+CGG 0.715658 8_1:+7615080 Msa1175990:CDS
AGTGGGTTGATGGAAAACTG+TGG 0.742505 8_1:-7614896 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr8_1:7616044-7616063 Msa1175990:intron 0.0%
!! TATATATATATATATATATA+GGG + chr8_1:7616045-7616064 Msa1175990:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr8_1:7616044-7616063 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr8_1:7616045-7616064 None:intergenic 0.0%
!!! ATTTTTTTTTTTGTTTTTGT+AGG + chr8_1:7614369-7614388 Msa1175990:intron 10.0%
!!! AAAATATTGTGTTATTTATT+TGG + chr8_1:7614603-7614622 Msa1175990:intron 10.0%
!! TAGTTTCTTTAATAAAAAAA+AGG - chr8_1:7614693-7614712 None:intergenic 10.0%
!!! TATGTTTTATAAGATTTTAA+AGG + chr8_1:7614795-7614814 Msa1175990:intron 10.0%
!!! ATTTTTTTTTAAATAGATCT+AGG + chr8_1:7616856-7616875 Msa1175990:three_prime_UTR 10.0%
!!! TTTTTTTTTAAATAGATCTA+GGG + chr8_1:7616857-7616876 Msa1175990:three_prime_UTR 10.0%
!! TAATTGAAAAGAAAATATTA+AGG + chr8_1:7617181-7617200 Msa1175990:three_prime_UTR 10.0%
!!! AGAATTTATTTTGAACAATT+TGG + chr8_1:7614174-7614193 Msa1175990:CDS 15.0%
!! AAATATAAGGAAAAGAAAAA+TGG - chr8_1:7614270-7614289 None:intergenic 15.0%
!! AGCATAGTAAAATAAATATA+AGG - chr8_1:7614283-7614302 None:intergenic 15.0%
!! TTTCTTTAATAAAAAAAAGG+TGG - chr8_1:7614690-7614709 None:intergenic 15.0%
!!! TTTTAAAGGAAAAATTGAAA+TGG + chr8_1:7614809-7614828 Msa1175990:intron 15.0%
!! CAAATTAATCACATATATAT+TGG - chr8_1:7615382-7615401 None:intergenic 15.0%
!! ATTAATTTAGTATCAAAACT+AGG + chr8_1:7615925-7615944 Msa1175990:intron 15.0%
!!! ATCATCATAAGTTTTTTTTT+AGG + chr8_1:7616818-7616837 Msa1175990:three_prime_UTR 15.0%
!!! AAGTTTTTTTTTAGGAAAAT+AGG + chr8_1:7616826-7616845 Msa1175990:three_prime_UTR 15.0%
!! ATGTACTAAAATATAAACAA+AGG - chr8_1:7617005-7617024 None:intergenic 15.0%
!!! TTGTTTATATTTTAGTACAT+AGG + chr8_1:7617005-7617024 Msa1175990:three_prime_UTR 15.0%
!!! TGTTTATATTTTAGTACATA+GGG + chr8_1:7617006-7617025 Msa1175990:three_prime_UTR 15.0%
!!! TATTTTTTTCTTCTAAAGAT+AGG + chr8_1:7617156-7617175 Msa1175990:three_prime_UTR 15.0%
!!! CATAAATATTTTCATCAAGA+AGG + chr8_1:7613727-7613746 Msa1175990:five_prime_UTR 20.0%
!!! TAAATGTTGTGTCATTATAT+TGG - chr8_1:7614104-7614123 None:intergenic 20.0%
!! ACATTTACCAAAATATTTGT+TGG + chr8_1:7614117-7614136 Msa1175990:CDS 20.0%
!! AAGAAAGAAATAAAAGAGAA+TGG - chr8_1:7614542-7614561 None:intergenic 20.0%
!!! AAAGAAACTACAACTTTTTA+TGG + chr8_1:7614703-7614722 Msa1175990:intron 20.0%
!! GTTTCAATTAATAGTGAAAT+CGG + chr8_1:7615130-7615149 Msa1175990:intron 20.0%
!!! TAATTTTGTCAAAATCATGT+TGG + chr8_1:7615324-7615343 Msa1175990:intron 20.0%
!! TTAAAGAATCAACTAAATCA+CGG + chr8_1:7615444-7615463 Msa1175990:intron 20.0%
!! TTTAATCTCTCAAATTATAG+AGG - chr8_1:7616543-7616562 None:intergenic 20.0%
!! AAAAAAACTTATGATGATCA+TGG - chr8_1:7616816-7616835 None:intergenic 20.0%
!! GAATCTAATTATTTAAGCTT+TGG + chr8_1:7616908-7616927 Msa1175990:three_prime_UTR 20.0%
! TAATGATTTCCTTTCTGTTA+AGG + chr8_1:7613781-7613800 Msa1175990:five_prime_UTR 25.0%
! AATGATTTCCTTTCTGTTAA+GGG + chr8_1:7613782-7613801 Msa1175990:five_prime_UTR 25.0%
! ATGAAGAGTGAAAAAGAAAA+GGG - chr8_1:7613960-7613979 None:intergenic 25.0%
! AATGAAGAGTGAAAAAGAAA+AGG - chr8_1:7613961-7613980 None:intergenic 25.0%
!! TTTACCAAAATATTTGTTGG+AGG + chr8_1:7614120-7614139 Msa1175990:CDS 25.0%
!! TTACCAAAATATTTGTTGGA+GGG + chr8_1:7614121-7614140 Msa1175990:CDS 25.0%
! TTATCACTGATAAGTATACT+GGG + chr8_1:7614217-7614236 Msa1175990:CDS 25.0%
! AAATAAAAGAGAATGGTAGA+AGG - chr8_1:7614535-7614554 None:intergenic 25.0%
! TAGAATTGACATCAAAGAAA+AGG - chr8_1:7615028-7615047 None:intergenic 25.0%
! TATTTATCTGACAGATATTC+TGG + chr8_1:7615051-7615070 Msa1175990:intron 25.0%
! TCACTATTAATTGAAACATG+TGG - chr8_1:7615127-7615146 None:intergenic 25.0%
! TGAGCAATTCTATTTCAAAA+TGG + chr8_1:7615888-7615907 Msa1175990:intron 25.0%
! TTCATTATGTATTCGTTGTA+AGG + chr8_1:7616008-7616027 Msa1175990:intron 25.0%
! ATAAAAGACACCTTCATAAA+AGG + chr8_1:7616289-7616308 Msa1175990:intron 25.0%
!!! TTGATCATATTAGTCTTTTC+AGG - chr8_1:7616459-7616478 None:intergenic 25.0%
! ATGAATTGAGAATGTTGTTA+AGG - chr8_1:7616769-7616788 None:intergenic 25.0%
! ATCATATTCATTCATGCATA+GGG + chr8_1:7616883-7616902 Msa1175990:three_prime_UTR 25.0%
! AATAGTTGAATTACTCTAGA+AGG - chr8_1:7616940-7616959 None:intergenic 25.0%
!! TTCAACTATTGATTATGTCT+TGG + chr8_1:7616950-7616969 Msa1175990:three_prime_UTR 25.0%
!! TCAACTATTGATTATGTCTT+GGG + chr8_1:7616951-7616970 Msa1175990:three_prime_UTR 25.0%
! CTAATTGACCAATCAATAAA+GGG - chr8_1:7617060-7617079 None:intergenic 25.0%
! TCTAATTGACCAATCAATAA+AGG - chr8_1:7617061-7617080 None:intergenic 25.0%
TACTACAAAAGAACATTGCT+TGG - chr8_1:7613707-7613726 None:intergenic 30.0%
ATTACTGTCAAAGCAATGAA+AGG - chr8_1:7613765-7613784 None:intergenic 30.0%
TCATTCTCTCATATTGTCTT+TGG + chr8_1:7613976-7613995 Msa1175990:five_prime_UTR 30.0%
! TAACCCTCCAACAAATATTT+TGG - chr8_1:7614127-7614146 None:intergenic 30.0%
GTTATCACTGATAAGTATAC+TGG + chr8_1:7614216-7614235 Msa1175990:CDS 30.0%
! GTTTTTGTAGGTGACATTTA+AGG + chr8_1:7614381-7614400 Msa1175990:intron 30.0%
AATTGCAATATTGCTTCTCT+TGG + chr8_1:7614466-7614485 Msa1175990:CDS 30.0%
! CAAATTGATAGGTTGAACAA+TGG - chr8_1:7614645-7614664 None:intergenic 30.0%
CTAGGATGAATCAAATTGAT+AGG - chr8_1:7614656-7614675 None:intergenic 30.0%
CTATCAATTTGATTCATCCT+AGG + chr8_1:7614654-7614673 Msa1175990:intron 30.0%
ACATTTCCTTATTCAGCATA+TGG + chr8_1:7614928-7614947 Msa1175990:CDS 30.0%
CATTTCCTTATTCAGCATAT+GGG + chr8_1:7614929-7614948 Msa1175990:CDS 30.0%
AATCACGATGACACAATAAT+GGG + chr8_1:7615156-7615175 Msa1175990:intron 30.0%
! ATACTTCCATGACATAGTTT+TGG + chr8_1:7615181-7615200 Msa1175990:intron 30.0%
CAAAATTATGAGTAGCACTT+TGG - chr8_1:7615312-7615331 None:intergenic 30.0%
CAGAACTATTACAATGTCTA+TGG + chr8_1:7615579-7615598 Msa1175990:intron 30.0%
!! CATAGTAAGGGTACATATTT+TGG - chr8_1:7615665-7615684 None:intergenic 30.0%
CAAAATATGTACCCTTACTA+TGG + chr8_1:7615663-7615682 Msa1175990:CDS 30.0%
AGAATTATTACCAGCACTAA+TGG - chr8_1:7615820-7615839 None:intergenic 30.0%
! TTTTATCAAGTCACACCTTA+AGG + chr8_1:7616174-7616193 Msa1175990:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr8_1:7616192-7616211 None:intergenic 30.0%
!! AAAGACACCAACTTACTTTT+AGG - chr8_1:7616244-7616263 None:intergenic 30.0%
! ATAGAAGACACCTTTTATGA+AGG - chr8_1:7616302-7616321 None:intergenic 30.0%
!!! TCATATTAGTCTTTTCAGGT+GGG - chr8_1:7616455-7616474 None:intergenic 30.0%
!!! ATCATATTAGTCTTTTCAGG+TGG - chr8_1:7616456-7616475 None:intergenic 30.0%
AACATTCTACATCTTGATCA+TGG + chr8_1:7616716-7616735 Msa1175990:exon 30.0%
ATTGAGAATGTTGTTAAGGT+TGG - chr8_1:7616765-7616784 None:intergenic 30.0%
GATCATATTCATTCATGCAT+AGG + chr8_1:7616882-7616901 Msa1175990:three_prime_UTR 30.0%
ACAAAGGACTATTATGTCAT+TGG - chr8_1:7616989-7617008 None:intergenic 30.0%
TCTTTGAACCCTTTATTGAT+TGG + chr8_1:7617049-7617068 Msa1175990:three_prime_UTR 30.0%
AGAAAGTAAAAGTTGAGCTT+CGG + chr8_1:7617078-7617097 Msa1175990:three_prime_UTR 30.0%
AAGAACATTGCTTGGTTGAT+GGG - chr8_1:7613699-7613718 None:intergenic 35.0%
AAAGAACATTGCTTGGTTGA+TGG - chr8_1:7613700-7613719 None:intergenic 35.0%
TACCAATGTTGTGGAATCTT+AGG + chr8_1:7613805-7613824 Msa1175990:five_prime_UTR 35.0%
TTCCTAAGATTCCACAACAT+TGG - chr8_1:7613810-7613829 None:intergenic 35.0%
TCAACAAAGACAACCTCATA+TGG + chr8_1:7614059-7614078 Msa1175990:CDS 35.0%
AAGTATACTGGGAGATCTAA+AGG + chr8_1:7614228-7614247 Msa1175990:CDS 35.0%
AATCCATCTCCAGTTATTGA+TGG + chr8_1:7614433-7614452 Msa1175990:CDS 35.0%
GAAAAATTGAAATGGTGTGC+AGG + chr8_1:7614817-7614836 Msa1175990:intron 35.0%
GTACAATCAGTTCCTTATCA+TGG + chr8_1:7614865-7614884 Msa1175990:CDS 35.0%
AGTTACCCATATGCTGAATA+AGG - chr8_1:7614937-7614956 None:intergenic 35.0%
GAATCACGATGACACAATAA+TGG + chr8_1:7615155-7615174 Msa1175990:intron 35.0%
ATGACACCAAAACTATGTCA+TGG - chr8_1:7615190-7615209 None:intergenic 35.0%
!!! TGACATAGTTTTGGTGTCAT+TGG + chr8_1:7615190-7615209 Msa1175990:intron 35.0%
!!! GACATAGTTTTGGTGTCATT+GGG + chr8_1:7615191-7615210 Msa1175990:intron 35.0%
!!! ACATAGTTTTGGTGTCATTG+GGG + chr8_1:7615192-7615211 Msa1175990:intron 35.0%
GTGCATATTGACCATAGTAA+GGG - chr8_1:7615677-7615696 None:intergenic 35.0%
TGTGCATATTGACCATAGTA+AGG - chr8_1:7615678-7615697 None:intergenic 35.0%
! CAATATGCACAAAGTATCCA+TGG + chr8_1:7615687-7615706 Msa1175990:CDS 35.0%
AACTGGAATTTGGGTCATTT+GGG - chr8_1:7615736-7615755 None:intergenic 35.0%
AAACTGGAATTTGGGTCATT+TGG - chr8_1:7615737-7615756 None:intergenic 35.0%
TATTACCAGCACTAATGGTT+GGG - chr8_1:7615815-7615834 None:intergenic 35.0%
TTATTACCAGCACTAATGGT+TGG - chr8_1:7615816-7615835 None:intergenic 35.0%
TGATAAAAGACACCACCAAA+GGG - chr8_1:7616162-7616181 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - chr8_1:7616163-7616182 None:intergenic 35.0%
ACACCTTCCTAAAAGTAAGT+TGG + chr8_1:7616234-7616253 Msa1175990:intron 35.0%
!! ACACCAACTTACTTTTAGGA+AGG - chr8_1:7616240-7616259 None:intergenic 35.0%
ATGGTGTCTTACAAGTTACA+AGG + chr8_1:7616735-7616754 Msa1175990:three_prime_UTR 35.0%
! TATGATGATCATGGTGATGA+TGG - chr8_1:7616807-7616826 None:intergenic 35.0%
ATTGATTATGTCTTGGGTGT+TGG + chr8_1:7616957-7616976 Msa1175990:three_prime_UTR 35.0%
! AGAACATTGCTTGGTTGATG+GGG - chr8_1:7613698-7613717 None:intergenic 40.0%
CATTGGTACCCTTAACAGAA+AGG - chr8_1:7613793-7613812 None:intergenic 40.0%
!! TGTTAAGGGTACCAATGTTG+TGG + chr8_1:7613796-7613815 Msa1175990:five_prime_UTR 40.0%
TGTTGTGGAATCTTAGGAAG+AGG + chr8_1:7613811-7613830 Msa1175990:five_prime_UTR 40.0%
TTGTTACCACTCACCATATG+AGG - chr8_1:7614075-7614094 None:intergenic 40.0%
!! TATTTGTTGGAGGGTTAGCT+TGG + chr8_1:7614130-7614149 Msa1175990:CDS 40.0%
!! ATTTGTTGGAGGGTTAGCTT+GGG + chr8_1:7614131-7614150 Msa1175990:CDS 40.0%
! GTTAGCTTGGGAAACTCAAA+GGG + chr8_1:7614143-7614162 Msa1175990:CDS 40.0%
ACTGGGAGATCTAAAGGTTA+TGG + chr8_1:7614234-7614253 Msa1175990:CDS 40.0%
CTTCCATCAATAACTGGAGA+TGG - chr8_1:7614439-7614458 None:intergenic 40.0%
GCTCTTCTTCCATCAATAAC+TGG - chr8_1:7614445-7614464 None:intergenic 40.0%
! TGATAGGTTGAACAATGGCA+GGG - chr8_1:7614640-7614659 None:intergenic 40.0%
! TTGATAGGTTGAACAATGGC+AGG - chr8_1:7614641-7614660 None:intergenic 40.0%
AATTGAAATGGTGTGCAGGA+AGG + chr8_1:7614821-7614840 Msa1175990:intron 40.0%
GTGGATGAAGAACCATGATA+AGG - chr8_1:7614880-7614899 None:intergenic 40.0%
ACAAGACACATTGTATCCTG+CGG + chr8_1:7615080-7615099 Msa1175990:CDS 40.0%
ATTACATCAACACTTACCGC+AGG - chr8_1:7615099-7615118 None:intergenic 40.0%
TCACCTTACTATCCTTCTGT+TGG + chr8_1:7615615-7615634 Msa1175990:CDS 40.0%
! AGTATCCATGGTCATGGTTT+TGG + chr8_1:7615699-7615718 Msa1175990:CDS 40.0%
ACTGGAATTTGGGTCATTTG+GGG - chr8_1:7615735-7615754 None:intergenic 40.0%
CTGAGGCAAAACTGGAATTT+GGG - chr8_1:7615745-7615764 None:intergenic 40.0%
! CAGTTTTGCCTCAGCATTTT+GGG + chr8_1:7615751-7615770 Msa1175990:CDS 40.0%
TTATGTTACAAGCCACCCTT+TGG + chr8_1:7616144-7616163 Msa1175990:intron 40.0%
TGCTGCTATTGTAGTAGTTG+TGG - chr8_1:7616638-7616657 None:intergenic 40.0%
TTGTTCAGTATCTGTTCCAG+AGG - chr8_1:7616695-7616714 None:intergenic 40.0%
AGACAACCTCATATGGTGAG+TGG + chr8_1:7614066-7614085 Msa1175990:CDS 45.0%
!! GGTTAGCTTGGGAAACTCAA+AGG + chr8_1:7614142-7614161 Msa1175990:CDS 45.0%
GGTGACATTTAAGGATCCAG+AGG + chr8_1:7614390-7614409 Msa1175990:intron 45.0%
CGATCACTAACTCTTCAGCA+TGG + chr8_1:7614502-7614521 Msa1175990:CDS 45.0%
! AAGGTGGTAGCTTTTAGCCT+AGG - chr8_1:7614674-7614693 None:intergenic 45.0%
AATGGTGTGCAGGAAGGTTT+AGG + chr8_1:7614827-7614846 Msa1175990:intron 45.0%
ACTGATTGTACCACTCCATG+TGG - chr8_1:7614856-7614875 None:intergenic 45.0%
!! AGTGGGTTGATGGAAAACTG+TGG - chr8_1:7614899-7614918 None:intergenic 45.0%
! CAGTTTTCCATCAACCCACT+AGG + chr8_1:7614899-7614918 Msa1175990:CDS 45.0%
GGAAATGTGTACTGCCTAGT+GGG - chr8_1:7614916-7614935 None:intergenic 45.0%
AGGAAATGTGTACTGCCTAG+TGG - chr8_1:7614917-7614936 None:intergenic 45.0%
ATCCTGGTCATTGATGTGTG+TGG + chr8_1:7615217-7615236 Msa1175990:intron 45.0%
ATCCACACACATCAATGACC+AGG - chr8_1:7615222-7615241 None:intergenic 45.0%
TTGATGTGTGTGGATGTGTG+TGG + chr8_1:7615227-7615246 Msa1175990:intron 45.0%
TGATGTGTGTGGATGTGTGT+GGG + chr8_1:7615228-7615247 Msa1175990:intron 45.0%
! TGTGGTGGAGATGCAAGTTA+TGG + chr8_1:7615261-7615280 Msa1175990:intron 45.0%
GATGCAAGTTATGGCACCAA+TGG + chr8_1:7615270-7615289 Msa1175990:intron 45.0%
GCTCCAACAGAAGGATAGTA+AGG - chr8_1:7615621-7615640 None:intergenic 45.0%
TATCCTTCTGTTGGAGCTTC+TGG + chr8_1:7615624-7615643 Msa1175990:CDS 45.0%
ATCCTTCTGTTGGAGCTTCT+GGG + chr8_1:7615625-7615644 Msa1175990:CDS 45.0%
! GCACAAAGTATCCATGGTCA+TGG + chr8_1:7615693-7615712 Msa1175990:CDS 45.0%
GAACTCCAAAACCATGACCA+TGG - chr8_1:7615707-7615726 None:intergenic 45.0%
CTGGAATTTGGGTCATTTGG+GGG - chr8_1:7615734-7615753 None:intergenic 45.0%
GCTGAGGCAAAACTGGAATT+TGG - chr8_1:7615746-7615765 None:intergenic 45.0%
CCAAAATGCTGAGGCAAAAC+TGG - chr8_1:7615753-7615772 None:intergenic 45.0%
! CCAGTTTTGCCTCAGCATTT+TGG + chr8_1:7615750-7615769 Msa1175990:CDS 45.0%
GTTGGGATTGCAACTGAAGA+AGG - chr8_1:7615798-7615817 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr8_1:7616159-7616178 None:intergenic 45.0%
TACTACAATAGCAGCACCTG+TGG + chr8_1:7616642-7616661 Msa1175990:CDS 45.0%
TTGAGCTTCGGTAGCTCAAT+AGG + chr8_1:7617090-7617109 Msa1175990:three_prime_UTR 45.0%
!!! ATTTATTTACTATTTTTTTT+TGG + chr8_1:7614732-7614751 Msa1175990:intron 5.0%
CATGCTCTTATAGCTGCCTC+TGG - chr8_1:7614409-7614428 None:intergenic 50.0%
GATTGTACCACTCCATGTGG+AGG - chr8_1:7614853-7614872 None:intergenic 50.0%
!! TGTACTGCCTAGTGGGTTGA+TGG - chr8_1:7614909-7614928 None:intergenic 50.0%
!! TGGTGTCATTGGGGAAATCC+TGG + chr8_1:7615201-7615220 Msa1175990:intron 50.0%
GATGTGTGTGGATGTGTGTG+GGG + chr8_1:7615229-7615248 Msa1175990:intron 50.0%
CACCAATGGCACCAAAGCTA+TGG + chr8_1:7615284-7615303 Msa1175990:intron 50.0%
!! TGCCATAGCTTTGGTGCCAT+TGG - chr8_1:7615289-7615308 None:intergenic 50.0%
!! GCACTTTGGTGCCATAGCTT+TGG - chr8_1:7615298-7615317 None:intergenic 50.0%
TCCTTCTGTTGGAGCTTCTG+GGG + chr8_1:7615626-7615645 Msa1175990:CDS 50.0%
CCTTGTGACCCAAAATGCTG+AGG - chr8_1:7615762-7615781 None:intergenic 50.0%
!! CCTCAGCATTTTGGGTCACA+AGG + chr8_1:7615759-7615778 Msa1175990:CDS 50.0%
GCAATCCCAACCATTAGTGC+TGG + chr8_1:7615807-7615826 Msa1175990:CDS 50.0%
TGTTACAAGCCACCCTTTGG+TGG + chr8_1:7616147-7616166 Msa1175990:intron 50.0%
AGCACCTGTGGCAGTAACAA+GGG + chr8_1:7616654-7616673 Msa1175990:CDS 50.0%
TCTGTTCCAGAGGCTTGTGA+AGG - chr8_1:7616685-7616704 None:intergenic 50.0%
GGAAGGTTTAGGCCTCCACA+TGG + chr8_1:7614838-7614857 Msa1175990:intron 55.0%
GTTTAGGCCTCCACATGGAG+TGG + chr8_1:7614843-7614862 Msa1175990:CDS 55.0%
TGTGTGGGGATGTGTGTGTG+TGG + chr8_1:7615243-7615262 Msa1175990:intron 55.0%
!! TGTTGGAGCTTCTGGGGCAA+TGG + chr8_1:7615632-7615651 Msa1175990:CDS 55.0%
!! GTTGGAGCTTCTGGGGCAAT+GGG + chr8_1:7615633-7615652 Msa1175990:CDS 55.0%
!! AGCTTCTGGGGCAATGGGTT+TGG + chr8_1:7615638-7615657 Msa1175990:CDS 55.0%
CAGCACCTGTGGCAGTAACA+AGG + chr8_1:7616653-7616672 Msa1175990:CDS 55.0%
GTGGGGATGTGTGTGTGTGG+TGG + chr8_1:7615246-7615265 Msa1175990:intron 60.0%
GCCCCAGAAGCTCCAACAGA+AGG - chr8_1:7615630-7615649 None:intergenic 60.0%
CCAGCCCTTGTTACTGCCAC+AGG - chr8_1:7616661-7616680 None:intergenic 60.0%
CCTGTGGCAGTAACAAGGGC+TGG + chr8_1:7616658-7616677 Msa1175990:CDS 60.0%
GCTGGTCCTTCACAAGCCTC+TGG + chr8_1:7616676-7616695 Msa1175990:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 7613695 7617245 7613695 ID=Msa1175990;Name=Msa1175990
chr8_1 mRNA 7613695 7617245 7613695 ID=Msa1175990-mRNA-1;Parent=Msa1175990;Name=Msa1175990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=359|1|1|1|1|1|6|513|282
chr8_1 exon 7613695 7614260 7613695 ID=Msa1175990-mRNA-1:exon:2752;Parent=Msa1175990-mRNA-1
chr8_1 exon 7614391 7614523 7614391 ID=Msa1175990-mRNA-1:exon:2753;Parent=Msa1175990-mRNA-1
chr8_1 exon 7614839 7614950 7614839 ID=Msa1175990-mRNA-1:exon:2754;Parent=Msa1175990-mRNA-1
chr8_1 exon 7615065 7615101 7615065 ID=Msa1175990-mRNA-1:exon:2755;Parent=Msa1175990-mRNA-1
chr8_1 exon 7615582 7615828 7615582 ID=Msa1175990-mRNA-1:exon:2756;Parent=Msa1175990-mRNA-1
chr8_1 exon 7616620 7617245 7616620 ID=Msa1175990-mRNA-1:exon:2757;Parent=Msa1175990-mRNA-1
chr8_1 five_prime_UTR 7613695 7614053 7613695 ID=Msa1175990-mRNA-1:five_prime_utr;Parent=Msa1175990-mRNA-1
chr8_1 CDS 7614054 7614260 7614054 ID=Msa1175990-mRNA-1:cds;Parent=Msa1175990-mRNA-1
chr8_1 CDS 7614391 7614523 7614391 ID=Msa1175990-mRNA-1:cds;Parent=Msa1175990-mRNA-1
chr8_1 CDS 7614839 7614950 7614839 ID=Msa1175990-mRNA-1:cds;Parent=Msa1175990-mRNA-1
chr8_1 CDS 7615065 7615101 7615065 ID=Msa1175990-mRNA-1:cds;Parent=Msa1175990-mRNA-1
chr8_1 CDS 7615582 7615828 7615582 ID=Msa1175990-mRNA-1:cds;Parent=Msa1175990-mRNA-1
chr8_1 CDS 7616620 7616732 7616620 ID=Msa1175990-mRNA-1:cds;Parent=Msa1175990-mRNA-1
chr8_1 three_prime_UTR 7616733 7617245 7616733 ID=Msa1175990-mRNA-1:three_prime_utr;Parent=Msa1175990-mRNA-1
Gene Sequence

>Msa1175990

ATGTCTCAACAAAGACAACCTCATATGGTGAGTGGTAACAATCAAGACCAATATAATGACACAACATTTACCAAAATATTTGTTGGAGGGTTAGCTTGGGAAACTCAAAGGGAAACAATGAGAATTTATTTTGAACAATTTGGAGAGATCTTAGAAGCTGTTGTTATCACTGATAAGTATACTGGGAGATCTAAAGGTTATGGTTTTGTGACATTTAAGGATCCAGAGGCAGCTATAAGAGCATGTCAAAATCCATCTCCAGTTATTGATGGAAGAAGAGCAAATTGCAATATTGCTTCTCTTGGTGCTAACAAGAATCGATCACTAACTCTTCAGCATGGAAGGTTTAGGCCTCCACATGGAGTGGTACAATCAGTTCCTTATCATGGTTCTTCATCCACAGTTTTCCATCAACCCACTAGGCAGTACACATTTCCTTATTCAGCATATGGATATTCTGGATATTCACAAGACACATTGTATCCTGCGAACTATTACAATGTCTATGGAGTTCAACAATATTCACCTTACTATCCTTCTGTTGGAGCTTCTGGGGCAATGGGTTTGGTCCAAAATATGTACCCTTACTATGGTCAATATGCACAAAGTATCCATGGTCATGGTTTTGGAGTTCAATACCCCCAAATGACCCAAATTCCAGTTTTGCCTCAGCATTTTGGGTCACAAGGAATATTGACTCTTCCTTCTTCAGTTGCAATCCCAACCATTAGTGCTGCAACAGTAACTGCAACCACAACTACTACAATAGCAGCACCTGTGGCAGTAACAAGGGCTGGTCCTTCACAAGCCTCTGGAACAGATACTGAACAACAACATTCTACATCTTGA
Protein sequence

>Msa1175990

MSQQRQPHMVSGNNQDQYNDTTFTKIFVGGLAWETQRETMRIYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLTLQHGRFRPPHGVVQSVPYHGSSSTVFHQPTRQYTFPYSAYGYSGYSQDTLYPANYYNVYGVQQYSPYYPSVGASGAMGLVQNMYPYYGQYAQSIHGHGFGVQYPQMTQIPVLPQHFGSQGILTLPSSVAIPTISAATVTATTTTTIAAPVAVTRAGPSQASGTDTEQQHSTS*