Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175750 | sp|E3VXF2|SGO1_ORYSJ | 32.558 | 215 | 112 | 8 | 30 | 232 | 15 | 208 | 1.08e-14 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175750 | A0A072VMQ6 | 94.975 | 398 | 17 | 2 | 1 | 396 | 1 | 397 | 0.0 | 757 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0175750 | 0.812154 | 4.889929e-51 | -8.615850e-47 |
| Msa0001940 | Msa0175750 | 0.826210 | 3.073911e-54 | -8.615850e-47 |
| Msa0002580 | Msa0175750 | 0.801293 | 9.639638e-49 | -8.615850e-47 |
| Msa0017950 | Msa0175750 | 0.824420 | 8.149210e-54 | -8.615850e-47 |
| Msa0027280 | Msa0175750 | 0.830108 | 3.534783e-55 | -8.615850e-47 |
| Msa0035340 | Msa0175750 | 0.801086 | 1.063079e-48 | -8.615850e-47 |
| Msa0042640 | Msa0175750 | 0.839473 | 1.551497e-57 | -8.615850e-47 |
| Msa0048510 | Msa0175750 | 0.812252 | 4.655223e-51 | -8.615850e-47 |
| Msa0077340 | Msa0175750 | 0.821293 | 4.361986e-53 | -8.615850e-47 |
| Msa0077560 | Msa0175750 | 0.808211 | 3.462296e-50 | -8.615850e-47 |
| Msa0081390 | Msa0175750 | 0.830658 | 2.595001e-55 | -8.615850e-47 |
| Msa0081450 | Msa0175750 | 0.818522 | 1.875965e-52 | -8.615850e-47 |
| Msa0081780 | Msa0175750 | 0.803990 | 2.678167e-49 | -8.615850e-47 |
| Msa0081980 | Msa0175750 | 0.832494 | 9.158187e-56 | -8.615850e-47 |
| Msa0082020 | Msa0175750 | 0.837654 | 4.576827e-57 | -8.615850e-47 |
| Msa0094780 | Msa0175750 | 0.808408 | 3.142674e-50 | -8.615850e-47 |
| Msa0098040 | Msa0175750 | 0.817789 | 2.748756e-52 | -8.615850e-47 |
| Msa0123070 | Msa0175750 | 0.807371 | 5.223010e-50 | -8.615850e-47 |
| Msa0128460 | Msa0175750 | 0.824530 | 7.680254e-54 | -8.615850e-47 |
| Msa0173690 | Msa0175750 | 0.817570 | 3.079642e-52 | -8.615850e-47 |
| Msa0174290 | Msa0175750 | 0.835262 | 1.858403e-56 | -8.615850e-47 |
| Msa0175750 | Msa0214550 | 0.815689 | 8.126784e-52 | -8.615850e-47 |
| Msa0175750 | Msa0221000 | 0.801651 | 8.141211e-49 | -8.615850e-47 |
| Msa0175750 | Msa0225860 | 0.804470 | 2.127608e-49 | -8.615850e-47 |
| Msa0175750 | Msa0244640 | 0.805891 | 1.072420e-49 | -8.615850e-47 |
| Msa0175750 | Msa0258390 | 0.812206 | 4.764564e-51 | -8.615850e-47 |
| Msa0175750 | Msa0297610 | 0.805374 | 1.376808e-49 | -8.615850e-47 |
| Msa0175750 | Msa0298470 | 0.816928 | 4.293344e-52 | -8.615850e-47 |
| Msa0175750 | Msa0307670 | 0.821917 | 3.129188e-53 | -8.615850e-47 |
| Msa0175750 | Msa0315690 | 0.805682 | 1.186406e-49 | -8.615850e-47 |
| Msa0175750 | Msa0320500 | 0.800114 | 1.677535e-48 | -8.615850e-47 |
| Msa0175750 | Msa0321620 | 0.813495 | 2.486190e-51 | -8.615850e-47 |
| Msa0175750 | Msa0340500 | 0.818832 | 1.595262e-52 | -8.615850e-47 |
| Msa0175750 | Msa0361910 | 0.839400 | 1.621318e-57 | -8.615850e-47 |
| Msa0175750 | Msa0417210 | 0.800345 | 1.505248e-48 | -8.615850e-47 |
| Msa0175750 | Msa0457560 | 0.805967 | 1.033659e-49 | -8.615850e-47 |
| Msa0175750 | Msa0476650 | 0.806912 | 6.532593e-50 | -8.615850e-47 |
| Msa0175750 | Msa0513970 | 0.809343 | 1.982856e-50 | -8.615850e-47 |
| Msa0175750 | Msa0529030 | 0.825082 | 5.689097e-54 | -8.615850e-47 |
| Msa0175750 | Msa0530780 | 0.852432 | 4.633797e-61 | -8.615850e-47 |
| Msa0175750 | Msa0534720 | 0.802224 | 6.208471e-49 | -8.615850e-47 |
| Msa0175750 | Msa0580370 | 0.831894 | 1.288402e-55 | -8.615850e-47 |
| Msa0175750 | Msa0581470 | 0.816729 | 4.759078e-52 | -8.615850e-47 |
| Msa0175750 | Msa0583360 | -0.801368 | 9.304129e-49 | -8.615850e-47 |
| Msa0175750 | Msa0590830 | 0.821835 | 3.268976e-53 | -8.615850e-47 |
| Msa0175750 | Msa0611210 | 0.820656 | 6.111487e-53 | -8.615850e-47 |
| Msa0175750 | Msa0624900 | 0.850467 | 1.666467e-60 | -8.615850e-47 |
| Msa0175750 | Msa0651550 | 0.809945 | 1.472195e-50 | -8.615850e-47 |
| Msa0175750 | Msa0658640 | 0.802500 | 5.448473e-49 | -8.615850e-47 |
| Msa0175750 | Msa0666700 | 0.808044 | 3.757780e-50 | -8.615850e-47 |
| Msa0175750 | Msa0704410 | 0.802957 | 4.384998e-49 | -8.615850e-47 |
| Msa0175750 | Msa0709440 | 0.802391 | 5.736864e-49 | -8.615850e-47 |
| Msa0175750 | Msa0735780 | 0.814219 | 1.721951e-51 | -8.615850e-47 |
| Msa0175750 | Msa0740710 | 0.814006 | 1.918652e-51 | -8.615850e-47 |
| Msa0175750 | Msa0741650 | 0.829423 | 5.191606e-55 | -8.615850e-47 |
| Msa0175750 | Msa0792370 | 0.822061 | 2.897492e-53 | -8.615850e-47 |
| Msa0175750 | Msa0795870 | 0.821227 | 4.515706e-53 | -8.615850e-47 |
| Msa0175750 | Msa0824450 | 0.820370 | 7.110770e-53 | -8.615850e-47 |
| Msa0175750 | Msa0833530 | 0.805721 | 1.164204e-49 | -8.615850e-47 |
| Msa0175750 | Msa0833650 | 0.829299 | 5.563462e-55 | -8.615850e-47 |
| Msa0175750 | Msa0835490 | 0.804803 | 1.812984e-49 | -8.615850e-47 |
| Msa0175750 | Msa0894400 | 0.805388 | 1.367627e-49 | -8.615850e-47 |
| Msa0175750 | Msa0894790 | 0.805842 | 1.098350e-49 | -8.615850e-47 |
| Msa0175750 | Msa0915520 | 0.805535 | 1.273694e-49 | -8.615850e-47 |
| Msa0175750 | Msa0921000 | 0.827283 | 1.704235e-54 | -8.615850e-47 |
| Msa0175750 | Msa0921590 | 0.815588 | 8.561300e-52 | -8.615850e-47 |
| Msa0175750 | Msa1071180 | -0.808311 | 3.296035e-50 | -8.615850e-47 |
| Msa0175750 | Msa1072940 | 0.800510 | 1.393235e-48 | -8.615850e-47 |
| Msa0175750 | Msa1084530 | 0.801530 | 8.620264e-49 | -8.615850e-47 |
| Msa0175750 | Msa1090140 | 0.800476 | 1.415873e-48 | -8.615850e-47 |
| Msa0175750 | Msa1103990 | 0.836815 | 7.502081e-57 | -8.615850e-47 |
| Msa0175750 | Msa1125820 | 0.800288 | 1.546446e-48 | -8.615850e-47 |
| Msa0175750 | Msa1125990 | 0.803970 | 2.703528e-49 | -8.615850e-47 |
| Msa0175750 | Msa1132840 | 0.832079 | 1.160148e-55 | -8.615850e-47 |
| Msa0175750 | Msa1155170 | -0.818083 | 2.357934e-52 | -8.615850e-47 |
| Msa0175750 | Msa1170670 | 0.802584 | 5.233408e-49 | -8.615850e-47 |
| Msa0175750 | Msa1175990 | 0.803505 | 3.376311e-49 | -8.615850e-47 |
| Msa0175750 | Msa1186020 | 0.827379 | 1.616653e-54 | -8.615850e-47 |
| Msa0175750 | Msa1206460 | 0.831573 | 1.546038e-55 | -8.615850e-47 |
| Msa0175750 | Msa1225860 | -0.806750 | 7.067638e-50 | -8.615850e-47 |
| Msa0175750 | Msa1265650 | 0.804001 | 2.663509e-49 | -8.615850e-47 |
| Msa0175750 | Msa1298220 | 0.837712 | 4.421723e-57 | -8.615850e-47 |
| Msa0175750 | Msa1321550 | 0.803401 | 3.548586e-49 | -8.615850e-47 |
| Msa0175750 | Msa1325410 | -0.805536 | 1.273255e-49 | -8.615850e-47 |
| Msa0175750 | Msa1329980 | 0.804279 | 2.331793e-49 | -8.615850e-47 |
| Msa0175750 | Msa1333080 | 0.800534 | 1.377665e-48 | -8.615850e-47 |
| Msa0175750 | Msa1343430 | 0.808222 | 3.443979e-50 | -8.615850e-47 |
| Msa0175750 | Msa1347310 | 0.804252 | 2.361537e-49 | -8.615850e-47 |
| Msa0175750 | Msa1356600 | -0.803050 | 4.194549e-49 | -8.615850e-47 |
| Msa0175750 | Msa1372040 | 0.828709 | 7.733696e-55 | -8.615850e-47 |
| Msa0175750 | Msa1390440 | 0.844113 | 9.241515e-59 | -8.615850e-47 |
| Msa0175750 | Msa1405460 | 0.823660 | 1.229058e-53 | -8.615850e-47 |
| Msa0175750 | Msa1405930 | 0.801371 | 9.293038e-49 | -8.615850e-47 |
| Msa0175750 | Msa1414640 | 0.829609 | 4.676857e-55 | -8.615850e-47 |
| Msa0175750 | Msa1417380 | 0.805924 | 1.055469e-49 | -8.615850e-47 |
| Msa0175750 | Msa1440310 | 0.813009 | 3.178993e-51 | -8.615850e-47 |
| Msa0175750 | Msa1440880 | 0.816788 | 4.616803e-52 | -8.615850e-47 |
| Msa0175750 | Msa1445910 | -0.804374 | 2.227051e-49 | -8.615850e-47 |
| Msa0175750 | Msa1452710 | 0.818971 | 1.483726e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175750 | MtrunA17_Chr1g0197141 | 94.975 | 398 | 17 | 2 | 1 | 396 | 1 | 397 | 0.0 | 757 |
| Msa0175750 | MtrunA17_Chr4g0028171 | 39.175 | 97 | 56 | 1 | 298 | 394 | 206 | 299 | 4.11e-13 | 69.7 |
| Msa0175750 | MtrunA17_Chr4g0028171 | 29.614 | 233 | 146 | 6 | 39 | 257 | 13 | 241 | 3.76e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175750 | AT5G04320.4 | 27.027 | 259 | 160 | 5 | 78 | 330 | 49 | 284 | 1.56e-11 | 66.2 |
| Msa0175750 | AT5G04320.2 | 27.027 | 259 | 160 | 5 | 78 | 330 | 49 | 284 | 1.56e-11 | 66.2 |
| Msa0175750 | AT5G04320.5 | 27.027 | 259 | 160 | 5 | 78 | 330 | 49 | 284 | 1.56e-11 | 66.2 |
| Msa0175750 | AT5G04320.3 | 26.820 | 261 | 162 | 5 | 76 | 330 | 23 | 260 | 1.75e-11 | 65.9 |
| Msa0175750 | AT3G44960.3 | 29.187 | 209 | 126 | 6 | 47 | 249 | 15 | 207 | 3.47e-11 | 63.9 |
Find 103 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTGGATACTTCAAATTT+TGG | 0.152385 | 1_4:-61874072 | None:intergenic |
| TGACATATCATCACATAAAT+TGG | 0.184226 | 1_4:-61874088 | None:intergenic |
| CGTTGAATAGCTTCTTGTTT+AGG | 0.272929 | 1_4:+61874403 | Msa0175750:three_prime_UTR |
| TTCAGCTGGTTCTGGTTTCT+CGG | 0.284010 | 1_4:-61874028 | None:intergenic |
| CTGGTTTCTCGGGTCTGAAC+AGG | 0.293350 | 1_4:-61874017 | None:intergenic |
| CTCGCATCCTCTTGAAAGTT+TGG | 0.293934 | 1_4:+61873652 | Msa0175750:CDS |
| GGTGATTCTGTTTCTGTTGT+TGG | 0.311273 | 1_4:+61872208 | Msa0175750:CDS |
| AAGAAGTCTTCAGCTGGTTC+TGG | 0.317331 | 1_4:-61874036 | None:intergenic |
| GTGCTTTGGTTGGGCCTTGT+TGG | 0.319039 | 1_4:-61872263 | None:intergenic |
| CAACCTCCCGTCGCTGAAAC+TGG | 0.327729 | 1_4:+61871846 | Msa0175750:CDS |
| GTGCAGGGTGGTGCTTTGGT+TGG | 0.330722 | 1_4:-61872273 | None:intergenic |
| GAGAAAGAATCTACATCATT+AGG | 0.338286 | 1_4:+61873680 | Msa0175750:CDS |
| AAAACAAAGGAGAAGCAAAA+AGG | 0.343577 | 1_4:+61873280 | Msa0175750:CDS |
| TGCAGGGTGGTGCTTTGGTT+GGG | 0.346409 | 1_4:-61872272 | None:intergenic |
| AGGCTAATTACATTGAGATT+TGG | 0.379116 | 1_4:-61873313 | None:intergenic |
| GCGTTGAAAGCTGGAAAATC+AGG | 0.392933 | 1_4:+61873593 | Msa0175750:CDS |
| AGCTGCTCAGAAGAAAATTC+TGG | 0.404402 | 1_4:+61872231 | Msa0175750:CDS |
| TCCGGCCACATCGTGAACTT+TGG | 0.440039 | 1_4:-61873705 | None:intergenic |
| GGTGGAGGAAGTGGTAGTGC+AGG | 0.444862 | 1_4:-61872289 | None:intergenic |
| TCAGCTGGTTCTGGTTTCTC+GGG | 0.444940 | 1_4:-61874027 | None:intergenic |
| CTGTGAAGGTTGTTTCGTAC+AGG | 0.446552 | 1_4:+61874217 | Msa0175750:CDS |
| GGTAGTGCAGGGTGGTGCTT+TGG | 0.446807 | 1_4:-61872277 | None:intergenic |
| AAAGGAATGTTGAAAATAAG+AGG | 0.462622 | 1_4:+61873855 | Msa0175750:CDS |
| GAAATGATGAGGAAGCTCTT+AGG | 0.464073 | 1_4:+61872455 | Msa0175750:CDS |
| AAGAGGTTTAGAAGTAGGTT+CGG | 0.464751 | 1_4:+61871711 | None:intergenic |
| ACTTTGTAAAATAAAAGTTA+TGG | 0.467229 | 1_4:+61874533 | Msa0175750:three_prime_UTR |
| CAGCTGATCGACGCGAAGGC+CGG | 0.476480 | 1_4:-61874197 | None:intergenic |
| AAATCTGCAGCGTTGAAAGC+TGG | 0.478212 | 1_4:+61873584 | Msa0175750:CDS |
| ATCAAGTAGGACATATCATA+AGG | 0.482763 | 1_4:-61874346 | None:intergenic |
| AAGATCGGAGTCGAGGAAGA+TGG | 0.483738 | 1_4:-61871823 | None:intergenic |
| TAAACAAGTCAAATCAGAAA+AGG | 0.486455 | 1_4:+61873421 | Msa0175750:CDS |
| AGTGACAAAGAGGGAAGGGC+AGG | 0.488106 | 1_4:-61874513 | None:intergenic |
| TCAGTTGAAGGTGGAGGAAG+TGG | 0.491527 | 1_4:-61872298 | None:intergenic |
| CAGAAAAGGTTGACAGTCAA+AGG | 0.498447 | 1_4:+61873435 | Msa0175750:CDS |
| ATTACATTCAGTATCTTGTC+CGG | 0.500303 | 1_4:-61873723 | None:intergenic |
| TATAATATACCTTGAGAATG+AGG | 0.502497 | 1_4:-61872333 | None:intergenic |
| TGCCTGTACACTTGATCCTC+AGG | 0.504464 | 1_4:+61874152 | Msa0175750:CDS |
| CCTTGTCCAGTTTCAGCGAC+GGG | 0.512611 | 1_4:-61871852 | None:intergenic |
| AGAACTTGTTCAGTGTTAGC+AGG | 0.515952 | 1_4:-61873827 | None:intergenic |
| TGTTGTGGCGATTCGAAACA+CGG | 0.517082 | 1_4:-61871787 | None:intergenic |
| GATTAGTGCAAGCAGACAAA+TGG | 0.517988 | 1_4:+61872805 | Msa0175750:CDS |
| TTGACTTGTTTAACAACAGC+TGG | 0.518722 | 1_4:-61873410 | None:intergenic |
| AGCTATGAAATTAACATCGA+TGG | 0.525803 | 1_4:+61872967 | Msa0175750:CDS |
| CAATTAATCTGAAAATGCGT+AGG | 0.528526 | 1_4:+61874247 | Msa0175750:CDS |
| GTAACACGAAGATCGTCTAT+TGG | 0.529512 | 1_4:+61874174 | Msa0175750:CDS |
| GTTTCGAATCGCCACAACAA+TGG | 0.531011 | 1_4:+61871791 | Msa0175750:exon |
| CTGAACAAGTTCTTGCTGAA+AGG | 0.532133 | 1_4:+61873837 | Msa0175750:CDS |
| TTCGCGTCGATCAGCTGTGA+AGG | 0.535513 | 1_4:+61874203 | Msa0175750:CDS |
| GTGGAGGAAGTGGTAGTGCA+GGG | 0.536378 | 1_4:-61872288 | None:intergenic |
| AGATCGGAGTCGAGGAAGAT+GGG | 0.546317 | 1_4:-61871822 | None:intergenic |
| TCCAAAGTTCACGATGTGGC+CGG | 0.550716 | 1_4:+61873704 | Msa0175750:CDS |
| TGGTTTCTCGGGTCTGAACA+GGG | 0.557557 | 1_4:-61874016 | None:intergenic |
| TCATTTGCCAAACTTTCAAG+AGG | 0.559353 | 1_4:-61873659 | None:intergenic |
| ATCTGAAAATGCGTAGGGAT+AGG | 0.559401 | 1_4:+61874253 | Msa0175750:CDS |
| GTTTGCAATTACAAATAACC+TGG | 0.559829 | 1_4:-61874562 | None:intergenic |
| CACGAAGATCGTCTATTGGC+CGG | 0.560924 | 1_4:+61874178 | Msa0175750:CDS |
| AATTAATCTGAAAATGCGTA+GGG | 0.561635 | 1_4:+61874248 | Msa0175750:CDS |
| GGGAGCACCTTCCATTGTTG+TGG | 0.562709 | 1_4:-61871802 | None:intergenic |
| GTATCAAAGAAGTCTTCAGC+TGG | 0.569283 | 1_4:-61874042 | None:intergenic |
| TGTGAAGGTTGTTTCGTACA+GGG | 0.572533 | 1_4:+61874218 | Msa0175750:CDS |
| ATTACAGGCATAGTTTGAGA+AGG | 0.573967 | 1_4:+61873986 | Msa0175750:intron |
| TTCAGTGTTAGCAGGTCCTG+AGG | 0.575831 | 1_4:-61873819 | None:intergenic |
| ACAAAGTGACAAAGAGGGAA+GGG | 0.577542 | 1_4:-61874517 | None:intergenic |
| CTCCGTTGACCTCATTCTCA+AGG | 0.579673 | 1_4:+61872324 | Msa0175750:CDS |
| TCAACGGAGACATCAGTTGA+AGG | 0.580490 | 1_4:-61872310 | None:intergenic |
| TACCTGAGGATCAAGTGTAC+AGG | 0.580964 | 1_4:-61874154 | None:intergenic |
| CTCAGGAAAATGAAATGATG+AGG | 0.584643 | 1_4:+61872444 | Msa0175750:intron |
| CAAACAGGTGTTCTTCGAGA+AGG | 0.585970 | 1_4:+61873561 | Msa0175750:intron |
| CCATGGCATTGTTGCAGATG+AGG | 0.589331 | 1_4:+61873113 | Msa0175750:CDS |
| CTACTTGATGCCACAATGCA+TGG | 0.591197 | 1_4:+61874360 | Msa0175750:three_prime_UTR |
| GAGGAAGTGGTAGTGCAGGG+TGG | 0.592603 | 1_4:-61872285 | None:intergenic |
| TGCCACAATGCATGGTGGTA+GGG | 0.594437 | 1_4:+61874368 | Msa0175750:three_prime_UTR |
| TACAAAGTGACAAAGAGGGA+AGG | 0.594621 | 1_4:-61874518 | None:intergenic |
| CGAATCGCCACAACAATGGA+AGG | 0.596720 | 1_4:+61871795 | Msa0175750:exon |
| TGAAGACTTCTTTGATACAG+AGG | 0.602950 | 1_4:+61874047 | Msa0175750:CDS |
| GAAGTTTCGCTTGATGCTGT+AGG | 0.604493 | 1_4:-61874120 | None:intergenic |
| ACCTTGTCCAGTTTCAGCGA+CGG | 0.605270 | 1_4:-61871853 | None:intergenic |
| CCTCATCTGCAACAATGCCA+TGG | 0.605304 | 1_4:-61873113 | None:intergenic |
| ATGCCACAATGCATGGTGGT+AGG | 0.606076 | 1_4:+61874367 | Msa0175750:three_prime_UTR |
| CATGCATTGTGGCATCAAGT+AGG | 0.607542 | 1_4:-61874359 | None:intergenic |
| TTCACAGCTGATCGACGCGA+AGG | 0.610564 | 1_4:-61874201 | None:intergenic |
| AACAGAGCAAAACTGATCCA+TGG | 0.616879 | 1_4:+61873096 | Msa0175750:CDS |
| AAAGTTTGAAGAAGAAAACA+AGG | 0.617125 | 1_4:+61873248 | Msa0175750:CDS |
| GAGACATCAGTTGAAGGTGG+AGG | 0.623469 | 1_4:-61872304 | None:intergenic |
| AAGGGAGAAGAACAAAACAA+AGG | 0.623499 | 1_4:+61873267 | Msa0175750:CDS |
| GAGGTTGAAGATCGGAGTCG+AGG | 0.623839 | 1_4:-61871830 | None:intergenic |
| TGCTAATACTCAAATGACGC+GGG | 0.629072 | 1_4:+61872673 | Msa0175750:CDS |
| AGCGACGGGAGGTTGAAGAT+CGG | 0.630621 | 1_4:-61871838 | None:intergenic |
| TGTCCAGTTTCAGCGACGGG+AGG | 0.630744 | 1_4:-61871849 | None:intergenic |
| CAAACTTTCAAGAGGATGCG+AGG | 0.631072 | 1_4:-61873651 | None:intergenic |
| ATCCCTACCACCATGCATTG+TGG | 0.632189 | 1_4:-61874370 | None:intergenic |
| TAAAAGTTATGGTACTGACC+AGG | 0.640374 | 1_4:+61874544 | Msa0175750:three_prime_UTR |
| GTGGCGATTCGAAACACGGA+GGG | 0.644641 | 1_4:-61871783 | None:intergenic |
| GACGATCTTCGTGTTACCTG+AGG | 0.646396 | 1_4:-61874168 | None:intergenic |
| TACCTTGAGAATGAGGTCAA+CGG | 0.647194 | 1_4:-61872326 | None:intergenic |
| ACGGAGACATCAGTTGAAGG+TGG | 0.656398 | 1_4:-61872307 | None:intergenic |
| TTGCTAATACTCAAATGACG+CGG | 0.657610 | 1_4:+61872672 | Msa0175750:CDS |
| CCCGTCGCTGAAACTGGACA+AGG | 0.671344 | 1_4:+61871852 | Msa0175750:CDS |
| AGGATCCAAAGTTCACGATG+TGG | 0.700483 | 1_4:+61873700 | Msa0175750:CDS |
| TCTGGCTGATATAACCAACA+AGG | 0.712159 | 1_4:+61872249 | Msa0175750:CDS |
| AAGTTTGAAGAAGAAAACAA+GGG | 0.730503 | 1_4:+61873249 | Msa0175750:CDS |
| CTTGATGCCACAATGCATGG+TGG | 0.759923 | 1_4:+61874363 | Msa0175750:three_prime_UTR |
| TGTGGCGATTCGAAACACGG+AGG | 0.775043 | 1_4:-61871784 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATTTTCCTTTAT+TGG | + | chr1_4:61873143-61873162 | Msa0175750:intron | 10.0% |
| !! | GGAAAAAAAAAAAAGATAAA+TGG | - | chr1_4:61873755-61873774 | None:intergenic | 15.0% |
| !! | ACTTTGTAAAATAAAAGTTA+TGG | + | chr1_4:61874533-61874552 | Msa0175750:three_prime_UTR | 15.0% |
| !!! | ATAGATAAACCTTTCAATTT+TGG | - | chr1_4:61872085-61872104 | None:intergenic | 20.0% |
| !! | TCGTATAGTTAATTGAAAAA+TGG | + | chr1_4:61872136-61872155 | Msa0175750:intron | 20.0% |
| !! | CGTATAGTTAATTGAAAAAT+GGG | + | chr1_4:61872137-61872156 | Msa0175750:intron | 20.0% |
| !!! | TTCAAAATTTTACCTCTTTT+TGG | - | chr1_4:61872187-61872206 | None:intergenic | 20.0% |
| !!! | AAAAAGAGGTAAAATTTTGA+AGG | + | chr1_4:61872186-61872205 | Msa0175750:CDS | 20.0% |
| !!! | AAAAGAGGTAAAATTTTGAA+GGG | + | chr1_4:61872187-61872206 | Msa0175750:CDS | 20.0% |
| !!! | ATTTTTTGAATTTGTTTCTC+AGG | + | chr1_4:61872427-61872446 | Msa0175750:intron | 20.0% |
| !!! | TACATTGATTGAAGATAAAA+AGG | - | chr1_4:61872527-61872546 | None:intergenic | 20.0% |
| !!! | TTTTTATCTTCAATCAATGT+AGG | + | chr1_4:61872526-61872545 | Msa0175750:intron | 20.0% |
| !!! | AAAGCAATTTTCAGAAATTT+CGG | + | chr1_4:61872627-61872646 | Msa0175750:CDS | 20.0% |
| !!! | TTGATATTCCAATCTAAAAT+TGG | + | chr1_4:61872757-61872776 | Msa0175750:intron | 20.0% |
| !!! | AAATTGGATACTTCAAATTT+TGG | - | chr1_4:61874075-61874094 | None:intergenic | 20.0% |
| !!! | AATTTTGTTTGTGCTACTAA+CGG | - | chr1_4:61871744-61871763 | None:intergenic | 25.0% |
| ! | CTATATATATGCAGACATTT+AGG | + | chr1_4:61872101-61872120 | Msa0175750:intron | 25.0% |
| ! | TATAATATACCTTGAGAATG+AGG | - | chr1_4:61872336-61872355 | None:intergenic | 25.0% |
| !!! | GGAATAGTTTTTGTTTACTT+TGG | + | chr1_4:61872547-61872566 | Msa0175750:intron | 25.0% |
| !! | AAAGATCACCAATTTTAGAT+TGG | - | chr1_4:61872768-61872787 | None:intergenic | 25.0% |
| ! | AAAGTTTGAAGAAGAAAACA+AGG | + | chr1_4:61873248-61873267 | Msa0175750:CDS | 25.0% |
| ! | AAGTTTGAAGAAGAAAACAA+GGG | + | chr1_4:61873249-61873268 | Msa0175750:CDS | 25.0% |
| !! | TTAAATTTTGTAGACAGAGT+GGG | - | chr1_4:61873345-61873364 | None:intergenic | 25.0% |
| !! | ATTAAATTTTGTAGACAGAG+TGG | - | chr1_4:61873346-61873365 | None:intergenic | 25.0% |
| ! | TAAACAAGTCAAATCAGAAA+AGG | + | chr1_4:61873421-61873440 | Msa0175750:CDS | 25.0% |
| !!! | TTAATGTCGAATTCTAAAGT+TGG | + | chr1_4:61873488-61873507 | Msa0175750:intron | 25.0% |
| ! | CAAGCAAAAAATTATGTTGA+AGG | - | chr1_4:61873796-61873815 | None:intergenic | 25.0% |
| ! | AAAGGAATGTTGAAAATAAG+AGG | + | chr1_4:61873855-61873874 | Msa0175750:CDS | 25.0% |
| ! | TGACATATCATCACATAAAT+TGG | - | chr1_4:61874091-61874110 | None:intergenic | 25.0% |
| ! | AATTAATCTGAAAATGCGTA+GGG | + | chr1_4:61874248-61874267 | Msa0175750:CDS | 25.0% |
| !! | ATTTTACAAAGTGACAAAGA+GGG | - | chr1_4:61874525-61874544 | None:intergenic | 25.0% |
| !! | TATTTTACAAAGTGACAAAG+AGG | - | chr1_4:61874526-61874545 | None:intergenic | 25.0% |
| AGTGAAATTCAGAATTGAAC+AGG | - | chr1_4:61871984-61872003 | None:intergenic | 30.0% | |
| ATAGCTATTAGATCTAACTG+AGG | + | chr1_4:61872057-61872076 | Msa0175750:intron | 30.0% | |
| !!! | TGCAGACATTTAGGTTTTTT+AGG | + | chr1_4:61872110-61872129 | Msa0175750:intron | 30.0% |
| !!! | GCAGACATTTAGGTTTTTTA+GGG | + | chr1_4:61872111-61872130 | Msa0175750:intron | 30.0% |
| ATGATTATCACTACACTTCA+TGG | + | chr1_4:61872404-61872423 | Msa0175750:intron | 30.0% | |
| AAATAAGAAATGAAAGCAGC+AGG | - | chr1_4:61872861-61872880 | None:intergenic | 30.0% | |
| AGCTATGAAATTAACATCGA+TGG | + | chr1_4:61872967-61872986 | Msa0175750:CDS | 30.0% | |
| CATTTACAAATTCATCAGGT+TGG | - | chr1_4:61873009-61873028 | None:intergenic | 30.0% | |
| TGCTCATTTACAAATTCATC+AGG | - | chr1_4:61873013-61873032 | None:intergenic | 30.0% | |
| AACCATCAAAAACTAAAGCA+GGG | - | chr1_4:61873046-61873065 | None:intergenic | 30.0% | |
| AAACCATCAAAAACTAAAGC+AGG | - | chr1_4:61873047-61873066 | None:intergenic | 30.0% | |
| AAAACAAAGGAGAAGCAAAA+AGG | + | chr1_4:61873280-61873299 | Msa0175750:CDS | 30.0% | |
| AGGCTAATTACATTGAGATT+TGG | - | chr1_4:61873316-61873335 | None:intergenic | 30.0% | |
| CGACATTAATCATGTGTAAA+AGG | - | chr1_4:61873477-61873496 | None:intergenic | 30.0% | |
| GAGAAAGAATCTACATCATT+AGG | + | chr1_4:61873680-61873699 | Msa0175750:CDS | 30.0% | |
| ATTACATTCAGTATCTTGTC+CGG | - | chr1_4:61873726-61873745 | None:intergenic | 30.0% | |
| AGGAGAGAAACAAAAGAAAA+AGG | - | chr1_4:61873776-61873795 | None:intergenic | 30.0% | |
| TATGAATTCCACTTTCTGAA+TGG | + | chr1_4:61873890-61873909 | Msa0175750:intron | 30.0% | |
| TGGATTCGAATGAATGAAAT+AGG | + | chr1_4:61873910-61873929 | Msa0175750:intron | 30.0% | |
| TGTCTTCACGAAAAAATTAC+AGG | + | chr1_4:61873971-61873990 | Msa0175750:intron | 30.0% | |
| ! | CTACGCATTTTCAGATTAAT+TGG | - | chr1_4:61874249-61874268 | None:intergenic | 30.0% |
| CAATTAATCTGAAAATGCGT+AGG | + | chr1_4:61874247-61874266 | Msa0175750:CDS | 30.0% | |
| !! | AGGTGAGTCAGTTTTATATA+AGG | + | chr1_4:61874273-61874292 | Msa0175750:exon | 30.0% |
| ATCAAGTAGGACATATCATA+AGG | - | chr1_4:61874349-61874368 | None:intergenic | 30.0% | |
| GTTTGCAATTACAAATAACC+TGG | - | chr1_4:61874565-61874584 | None:intergenic | 30.0% | |
| GAAATGAAAGAGAAGAAGAG+TGG | - | chr1_4:61871891-61871910 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTTTTGACCTGCA+AGG | - | chr1_4:61872171-61872190 | None:intergenic | 35.0% |
| CTCAGGAAAATGAAATGATG+AGG | + | chr1_4:61872444-61872463 | Msa0175750:intron | 35.0% | |
| ! | GGTTTGTTCTGTTTATAGTG+TGG | + | chr1_4:61872568-61872587 | Msa0175750:intron | 35.0% |
| TTGCTAATACTCAAATGACG+CGG | + | chr1_4:61872672-61872691 | Msa0175750:CDS | 35.0% | |
| ! | GATCTTTTTATCTGCAATGC+AGG | + | chr1_4:61872781-61872800 | Msa0175750:intron | 35.0% |
| !! | CATTCAATTTGTTGACATCC+AGG | + | chr1_4:61872898-61872917 | Msa0175750:intron | 35.0% |
| CTTGAACTAGCATGCAAAAA+TGG | + | chr1_4:61872935-61872954 | Msa0175750:CDS | 35.0% | |
| !! | GGTTTTGTCTTTTGATTCGT+AGG | + | chr1_4:61873062-61873081 | Msa0175750:intron | 35.0% |
| ! | TTGATTAAGTGAAAGTGTGC+TGG | - | chr1_4:61873195-61873214 | None:intergenic | 35.0% |
| ! | TGACTGCTTACTCTAAGAAA+AGG | - | chr1_4:61873223-61873242 | None:intergenic | 35.0% |
| AAGGGAGAAGAACAAAACAA+AGG | + | chr1_4:61873267-61873286 | Msa0175750:CDS | 35.0% | |
| !! | TTGACTTGTTTAACAACAGC+TGG | - | chr1_4:61873413-61873432 | None:intergenic | 35.0% |
| TCTCCTTCAAATATGCAAAC+AGG | + | chr1_4:61873546-61873565 | Msa0175750:intron | 35.0% | |
| ACACCTGTTTGCATATTTGA+AGG | - | chr1_4:61873552-61873571 | None:intergenic | 35.0% | |
| TCATTTGCCAAACTTTCAAG+AGG | - | chr1_4:61873662-61873681 | None:intergenic | 35.0% | |
| ATTCGAATCCATTCAGAAAG+TGG | - | chr1_4:61873901-61873920 | None:intergenic | 35.0% | |
| ! | TTTTCGTGAAGACATGAAAC+AGG | - | chr1_4:61873965-61873984 | None:intergenic | 35.0% |
| ATTACAGGCATAGTTTGAGA+AGG | + | chr1_4:61873986-61874005 | Msa0175750:intron | 35.0% | |
| TGAAGACTTCTTTGATACAG+AGG | + | chr1_4:61874047-61874066 | Msa0175750:CDS | 35.0% | |
| ! | CGTTGAATAGCTTCTTGTTT+AGG | + | chr1_4:61874403-61874422 | Msa0175750:three_prime_UTR | 35.0% |
| !! | TAAAAGTTATGGTACTGACC+AGG | + | chr1_4:61874544-61874563 | Msa0175750:three_prime_UTR | 35.0% |
| GGTTATGGGAATGAAGGATT+GGG | - | chr1_4:61871913-61871932 | None:intergenic | 40.0% | |
| GAACAGGAAAACCCTAATCT+CGG | - | chr1_4:61871968-61871987 | None:intergenic | 40.0% | |
| ACTGAGGCTCCAAAATTGAA+AGG | + | chr1_4:61872073-61872092 | Msa0175750:intron | 40.0% | |
| ! | AATGGGTTTCATTTCCTTGC+AGG | + | chr1_4:61872154-61872173 | Msa0175750:intron | 40.0% |
| GCAGGTCAAAAACCAAAAAG+AGG | + | chr1_4:61872172-61872191 | Msa0175750:intron | 40.0% | |
| !! | GGTGATTCTGTTTCTGTTGT+TGG | + | chr1_4:61872208-61872227 | Msa0175750:CDS | 40.0% |
| AGCTGCTCAGAAGAAAATTC+TGG | + | chr1_4:61872231-61872250 | Msa0175750:CDS | 40.0% | |
| TCTGGCTGATATAACCAACA+AGG | + | chr1_4:61872249-61872268 | Msa0175750:CDS | 40.0% | |
| TACCTTGAGAATGAGGTCAA+CGG | - | chr1_4:61872329-61872348 | None:intergenic | 40.0% | |
| GAAATGATGAGGAAGCTCTT+AGG | + | chr1_4:61872455-61872474 | Msa0175750:CDS | 40.0% | |
| TGCTAATACTCAAATGACGC+GGG | + | chr1_4:61872673-61872692 | Msa0175750:CDS | 40.0% | |
| GATTAGTGCAAGCAGACAAA+TGG | + | chr1_4:61872805-61872824 | Msa0175750:CDS | 40.0% | |
| TGGTGAGTCTTGAAAACCAA+TGG | + | chr1_4:61872825-61872844 | Msa0175750:intron | 40.0% | |
| !! | AATTTGTTGACATCCAGGTG+AGG | + | chr1_4:61872903-61872922 | Msa0175750:intron | 40.0% |
| ! | ATTTGTTGACATCCAGGTGA+GGG | + | chr1_4:61872904-61872923 | Msa0175750:intron | 40.0% |
| !!! | AGCCCTGCTTTAGTTTTTGA+TGG | + | chr1_4:61873041-61873060 | Msa0175750:intron | 40.0% |
| AACAGAGCAAAACTGATCCA+TGG | + | chr1_4:61873096-61873115 | Msa0175750:CDS | 40.0% | |
| CAAGCAGAAGAAGCCAATAA+AGG | - | chr1_4:61873159-61873178 | None:intergenic | 40.0% | |
| !! | TATTGGCTTCTTCTGCTTGT+TGG | + | chr1_4:61873160-61873179 | Msa0175750:intron | 40.0% |
| AAGGAGAAGCAAAAAGGAAG+AGG | + | chr1_4:61873286-61873305 | Msa0175750:CDS | 40.0% | |
| !! | TTTTGTAGACAGAGTGGGTT+CGG | - | chr1_4:61873340-61873359 | None:intergenic | 40.0% |
| CAGAAAAGGTTGACAGTCAA+AGG | + | chr1_4:61873435-61873454 | Msa0175750:CDS | 40.0% | |
| !! | CGAATTCTAAAGTTGGACAC+CGG | + | chr1_4:61873495-61873514 | Msa0175750:intron | 40.0% |
| !! | GAATTCTAAAGTTGGACACC+GGG | + | chr1_4:61873496-61873515 | Msa0175750:intron | 40.0% |
| !!! | AATTTTTTGCTTGCAGCCTC+AGG | + | chr1_4:61873803-61873822 | Msa0175750:intron | 40.0% |
| ! | AGAACTTGTTCAGTGTTAGC+AGG | - | chr1_4:61873830-61873849 | None:intergenic | 40.0% |
| CTGAACAAGTTCTTGCTGAA+AGG | + | chr1_4:61873837-61873856 | Msa0175750:CDS | 40.0% | |
| GTATCAAAGAAGTCTTCAGC+TGG | - | chr1_4:61874045-61874064 | None:intergenic | 40.0% | |
| GTAACACGAAGATCGTCTAT+TGG | + | chr1_4:61874174-61874193 | Msa0175750:CDS | 40.0% | |
| ! | TGTGAAGGTTGTTTCGTACA+GGG | + | chr1_4:61874218-61874237 | Msa0175750:CDS | 40.0% |
| ATCTGAAAATGCGTAGGGAT+AGG | + | chr1_4:61874253-61874272 | Msa0175750:CDS | 40.0% | |
| ACAAAGTGACAAAGAGGGAA+GGG | - | chr1_4:61874520-61874539 | None:intergenic | 40.0% | |
| TACAAAGTGACAAAGAGGGA+AGG | - | chr1_4:61874521-61874540 | None:intergenic | 40.0% | |
| TGTTGTGGCGATTCGAAACA+CGG | - | chr1_4:61871790-61871809 | None:intergenic | 45.0% | |
| GTTTCGAATCGCCACAACAA+TGG | + | chr1_4:61871791-61871810 | Msa0175750:exon | 45.0% | |
| GGGTTATGGGAATGAAGGAT+TGG | - | chr1_4:61871914-61871933 | None:intergenic | 45.0% | |
| TTCATTCCCATAACCCCCTA+GGG | + | chr1_4:61871918-61871937 | Msa0175750:intron | 45.0% | |
| AGTAAACCCTAGGGGGTTAT+GGG | - | chr1_4:61871927-61871946 | None:intergenic | 45.0% | |
| AGAGGGATGAGTAAACCCTA+GGG | - | chr1_4:61871936-61871955 | None:intergenic | 45.0% | |
| AAGAGGGATGAGTAAACCCT+AGG | - | chr1_4:61871937-61871956 | None:intergenic | 45.0% | |
| AAACCCTAATCTCGGAGTGA+GGG | - | chr1_4:61871960-61871979 | None:intergenic | 45.0% | |
| AAAACCCTAATCTCGGAGTG+AGG | - | chr1_4:61871961-61871980 | None:intergenic | 45.0% | |
| TCAACGGAGACATCAGTTGA+AGG | - | chr1_4:61872313-61872332 | None:intergenic | 45.0% | |
| ! | GACAGTCAAAGGTATGAGCT+TGG | + | chr1_4:61873446-61873465 | Msa0175750:intron | 45.0% |
| ! | TGCCTTGTTCCTAAGTATCC+CGG | - | chr1_4:61873517-61873536 | None:intergenic | 45.0% |
| CAAACAGGTGTTCTTCGAGA+AGG | + | chr1_4:61873561-61873580 | Msa0175750:intron | 45.0% | |
| ! | AAATCTGCAGCGTTGAAAGC+TGG | + | chr1_4:61873584-61873603 | Msa0175750:CDS | 45.0% |
| GCGTTGAAAGCTGGAAAATC+AGG | + | chr1_4:61873593-61873612 | Msa0175750:CDS | 45.0% | |
| CAAACTTTCAAGAGGATGCG+AGG | - | chr1_4:61873654-61873673 | None:intergenic | 45.0% | |
| CTCGCATCCTCTTGAAAGTT+TGG | + | chr1_4:61873652-61873671 | Msa0175750:CDS | 45.0% | |
| AGGATCCAAAGTTCACGATG+TGG | + | chr1_4:61873700-61873719 | Msa0175750:CDS | 45.0% | |
| !! | TTCAGCTGGTTCTGGTTTCT+CGG | - | chr1_4:61874031-61874050 | None:intergenic | 45.0% |
| ! | AAGAAGTCTTCAGCTGGTTC+TGG | - | chr1_4:61874039-61874058 | None:intergenic | 45.0% |
| GAAGTTTCGCTTGATGCTGT+AGG | - | chr1_4:61874123-61874142 | None:intergenic | 45.0% | |
| TACCTGAGGATCAAGTGTAC+AGG | - | chr1_4:61874157-61874176 | None:intergenic | 45.0% | |
| ! | CTGTGAAGGTTGTTTCGTAC+AGG | + | chr1_4:61874217-61874236 | Msa0175750:CDS | 45.0% |
| CATGCATTGTGGCATCAAGT+AGG | - | chr1_4:61874362-61874381 | None:intergenic | 45.0% | |
| CTACTTGATGCCACAATGCA+TGG | + | chr1_4:61874360-61874379 | Msa0175750:three_prime_UTR | 45.0% | |
| CGAATCGCCACAACAATGGA+AGG | + | chr1_4:61871795-61871814 | Msa0175750:exon | 50.0% | |
| AGATCGGAGTCGAGGAAGAT+GGG | - | chr1_4:61871825-61871844 | None:intergenic | 50.0% | |
| AAGATCGGAGTCGAGGAAGA+TGG | - | chr1_4:61871826-61871845 | None:intergenic | 50.0% | |
| ACCTTGTCCAGTTTCAGCGA+CGG | - | chr1_4:61871856-61871875 | None:intergenic | 50.0% | |
| CTAGGGGGTTATGGGAATGA+AGG | - | chr1_4:61871919-61871938 | None:intergenic | 50.0% | |
| CTTCATTCCCATAACCCCCT+AGG | + | chr1_4:61871917-61871936 | Msa0175750:intron | 50.0% | |
| GAGTAAACCCTAGGGGGTTA+TGG | - | chr1_4:61871928-61871947 | None:intergenic | 50.0% | |
| AGGGATGAGTAAACCCTAGG+GGG | - | chr1_4:61871934-61871953 | None:intergenic | 50.0% | |
| GAGGGATGAGTAAACCCTAG+GGG | - | chr1_4:61871935-61871954 | None:intergenic | 50.0% | |
| AATCTCGGAGTGAGGGAAGA+GGG | - | chr1_4:61871953-61871972 | None:intergenic | 50.0% | |
| TAATCTCGGAGTGAGGGAAG+AGG | - | chr1_4:61871954-61871973 | None:intergenic | 50.0% | |
| TCTTCCCTCACTCCGAGATT+AGG | + | chr1_4:61871953-61871972 | Msa0175750:intron | 50.0% | |
| CTTCCCTCACTCCGAGATTA+GGG | + | chr1_4:61871954-61871973 | Msa0175750:intron | 50.0% | |
| TCAGTTGAAGGTGGAGGAAG+TGG | - | chr1_4:61872301-61872320 | None:intergenic | 50.0% | |
| GAGACATCAGTTGAAGGTGG+AGG | - | chr1_4:61872307-61872326 | None:intergenic | 50.0% | |
| ACGGAGACATCAGTTGAAGG+TGG | - | chr1_4:61872310-61872329 | None:intergenic | 50.0% | |
| CTCCGTTGACCTCATTCTCA+AGG | + | chr1_4:61872324-61872343 | Msa0175750:CDS | 50.0% | |
| AGCAGGTGTCAATGCACCAT+TGG | - | chr1_4:61872844-61872863 | None:intergenic | 50.0% | |
| CCTCATCTGCAACAATGCCA+TGG | - | chr1_4:61873116-61873135 | None:intergenic | 50.0% | |
| CCATGGCATTGTTGCAGATG+AGG | + | chr1_4:61873113-61873132 | Msa0175750:CDS | 50.0% | |
| AGTTGGACACCGGGATACTT+AGG | + | chr1_4:61873505-61873524 | Msa0175750:intron | 50.0% | |
| CACCGGGATACTTAGGAACA+AGG | + | chr1_4:61873512-61873531 | Msa0175750:intron | 50.0% | |
| TCCAAAGTTCACGATGTGGC+CGG | + | chr1_4:61873704-61873723 | Msa0175750:CDS | 50.0% | |
| TTCAGTGTTAGCAGGTCCTG+AGG | - | chr1_4:61873822-61873841 | None:intergenic | 50.0% | |
| TGGTTTCTCGGGTCTGAACA+GGG | - | chr1_4:61874019-61874038 | None:intergenic | 50.0% | |
| !! | TCAGCTGGTTCTGGTTTCTC+GGG | - | chr1_4:61874030-61874049 | None:intergenic | 50.0% |
| TGCCTGTACACTTGATCCTC+AGG | + | chr1_4:61874152-61874171 | Msa0175750:CDS | 50.0% | |
| GACGATCTTCGTGTTACCTG+AGG | - | chr1_4:61874171-61874190 | None:intergenic | 50.0% | |
| CACGAAGATCGTCTATTGGC+CGG | + | chr1_4:61874178-61874197 | Msa0175750:CDS | 50.0% | |
| CTTGATGCCACAATGCATGG+TGG | + | chr1_4:61874363-61874382 | Msa0175750:three_prime_UTR | 50.0% | |
| ATGCCACAATGCATGGTGGT+AGG | + | chr1_4:61874367-61874386 | Msa0175750:three_prime_UTR | 50.0% | |
| TGCCACAATGCATGGTGGTA+GGG | + | chr1_4:61874368-61874387 | Msa0175750:three_prime_UTR | 50.0% | |
| ATCCCTACCACCATGCATTG+TGG | - | chr1_4:61874373-61874392 | None:intergenic | 50.0% | |
| GTGGCGATTCGAAACACGGA+GGG | - | chr1_4:61871786-61871805 | None:intergenic | 55.0% | |
| TGTGGCGATTCGAAACACGG+AGG | - | chr1_4:61871787-61871806 | None:intergenic | 55.0% | |
| !! | GGGAGCACCTTCCATTGTTG+TGG | - | chr1_4:61871805-61871824 | None:intergenic | 55.0% |
| GAGGTTGAAGATCGGAGTCG+AGG | - | chr1_4:61871833-61871852 | None:intergenic | 55.0% | |
| AGCGACGGGAGGTTGAAGAT+CGG | - | chr1_4:61871841-61871860 | None:intergenic | 55.0% | |
| CCTTGTCCAGTTTCAGCGAC+GGG | - | chr1_4:61871855-61871874 | None:intergenic | 55.0% | |
| ! | GTGCTTTGGTTGGGCCTTGT+TGG | - | chr1_4:61872266-61872285 | None:intergenic | 55.0% |
| TGCAGGGTGGTGCTTTGGTT+GGG | - | chr1_4:61872275-61872294 | None:intergenic | 55.0% | |
| ! | GTGGAGGAAGTGGTAGTGCA+GGG | - | chr1_4:61872291-61872310 | None:intergenic | 55.0% |
| CAAGCTGAAGTTCCCTCACC+TGG | - | chr1_4:61872919-61872938 | None:intergenic | 55.0% | |
| TCCGGCCACATCGTGAACTT+TGG | - | chr1_4:61873708-61873727 | None:intergenic | 55.0% | |
| CTGGTTTCTCGGGTCTGAAC+AGG | - | chr1_4:61874020-61874039 | None:intergenic | 55.0% | |
| TTCACAGCTGATCGACGCGA+AGG | - | chr1_4:61874204-61874223 | None:intergenic | 55.0% | |
| ! | TTCGCGTCGATCAGCTGTGA+AGG | + | chr1_4:61874203-61874222 | Msa0175750:CDS | 55.0% |
| AGTGACAAAGAGGGAAGGGC+AGG | - | chr1_4:61874516-61874535 | None:intergenic | 55.0% | |
| CAACCTCCCGTCGCTGAAAC+TGG | + | chr1_4:61871846-61871865 | Msa0175750:CDS | 60.0% | |
| TGTCCAGTTTCAGCGACGGG+AGG | - | chr1_4:61871852-61871871 | None:intergenic | 60.0% | |
| CCCGTCGCTGAAACTGGACA+AGG | + | chr1_4:61871852-61871871 | Msa0175750:CDS | 60.0% | |
| GTGCAGGGTGGTGCTTTGGT+TGG | - | chr1_4:61872276-61872295 | None:intergenic | 60.0% | |
| GGTAGTGCAGGGTGGTGCTT+TGG | - | chr1_4:61872280-61872299 | None:intergenic | 60.0% | |
| ! | GAGGAAGTGGTAGTGCAGGG+TGG | - | chr1_4:61872288-61872307 | None:intergenic | 60.0% |
| ! | GGTGGAGGAAGTGGTAGTGC+AGG | - | chr1_4:61872292-61872311 | None:intergenic | 60.0% |
| ! | GTAGACAGAGTGGGTTCGGC+AGG | - | chr1_4:61873336-61873355 | None:intergenic | 60.0% |
| CAGCTGATCGACGCGAAGGC+CGG | - | chr1_4:61874200-61874219 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 61871717 | 61874610 | 61871717 | ID=Msa0175750;Name=Msa0175750 |
| chr1_4 | mRNA | 61871717 | 61874610 | 61871717 | ID=Msa0175750-mRNA-1;Parent=Msa0175750;Name=Msa0175750-mRNA-1;_AED=0.17;_eAED=0.17;_QI=93|1|1|1|1|1|12|332|396 |
| chr1_4 | exon | 61871717 | 61871873 | 61871717 | ID=Msa0175750-mRNA-1:exon:19769;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61872176 | 61872345 | 61872176 | ID=Msa0175750-mRNA-1:exon:19770;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61872449 | 61872486 | 61872449 | ID=Msa0175750-mRNA-1:exon:19771;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61872586 | 61872694 | 61872586 | ID=Msa0175750-mRNA-1:exon:19772;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61872803 | 61872826 | 61872803 | ID=Msa0175750-mRNA-1:exon:19773;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61872920 | 61872988 | 61872920 | ID=Msa0175750-mRNA-1:exon:19774;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61873084 | 61873134 | 61873084 | ID=Msa0175750-mRNA-1:exon:19775;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61873231 | 61873324 | 61873231 | ID=Msa0175750-mRNA-1:exon:19776;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61873402 | 61873456 | 61873402 | ID=Msa0175750-mRNA-1:exon:19777;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61873568 | 61873740 | 61873568 | ID=Msa0175750-mRNA-1:exon:19778;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61873819 | 61873876 | 61873819 | ID=Msa0175750-mRNA-1:exon:19779;Parent=Msa0175750-mRNA-1 |
| chr1_4 | exon | 61873993 | 61874610 | 61873993 | ID=Msa0175750-mRNA-1:exon:19780;Parent=Msa0175750-mRNA-1 |
| chr1_4 | five_prime_UTR | 61871717 | 61871809 | 61871717 | ID=Msa0175750-mRNA-1:five_prime_utr;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61871810 | 61871873 | 61871810 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61872176 | 61872345 | 61872176 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61872449 | 61872486 | 61872449 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61872586 | 61872694 | 61872586 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61872803 | 61872826 | 61872803 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61872920 | 61872988 | 61872920 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61873084 | 61873134 | 61873084 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61873231 | 61873324 | 61873231 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61873402 | 61873456 | 61873402 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61873568 | 61873740 | 61873568 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61873819 | 61873876 | 61873819 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | CDS | 61873993 | 61874278 | 61873993 | ID=Msa0175750-mRNA-1:cds;Parent=Msa0175750-mRNA-1 |
| chr1_4 | three_prime_UTR | 61874279 | 61874610 | 61874279 | ID=Msa0175750-mRNA-1:three_prime_utr;Parent=Msa0175750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
