AlfalfaGEDB | Msa1211740

M. sativa cultivar zhongmu-4 / Msa1211740

KEGG: K18822
GO: -
PFAM: PF00201.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1211740	sp\|D4Q9Z4\|SGT2_SOYBN	54.054	333	148	4	84	416	165	492	1.66e-115	349
Msa1211740	sp\|D4Q9Z4\|SGT2_SOYBN	37.671	146	82	3	4	143	2	144	3.11e-18	90.1

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1211740	A0A396GXA7	71.550	471	76	4	1	417	1	467	0.0	646

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0042550	Msa1211740	0.807109	5.934061e-50	-8.615850e-47
Msa0092410	Msa1211740	0.813338	2.692980e-51	-8.615850e-47
Msa0103250	Msa1211740	0.803854	2.857132e-49	-8.615850e-47
Msa0158130	Msa1211740	-0.811706	6.123134e-51	-8.615850e-47
Msa0178510	Msa1211740	0.831086	2.037178e-55	-8.615850e-47
Msa0187030	Msa1211740	0.821049	4.963086e-53	-8.615850e-47
Msa0187830	Msa1211740	0.846436	2.175085e-59	-8.615850e-47
Msa0189610	Msa1211740	0.819321	1.235047e-52	-8.615850e-47
Msa0190530	Msa1211740	0.815702	8.075463e-52	-8.615850e-47
Msa0215590	Msa1211740	0.806164	9.395471e-50	-8.615850e-47

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1211740	MtrunA17_Chr7g0235051	71.550	471	76	4	1	417	1	467	0.0	646
Msa1211740	MtrunA17_Chr7g0243851	69.717	459	94	3	1	417	1	456	0.0	642
Msa1211740	MtrunA17_Chr4g0060511	93.146	321	20	1	97	417	183	501	0.0	617
Msa1211740	MtrunA17_Chr4g0060511	89.565	115	7	1	1	110	1	115	6.79e-64	213
Msa1211740	MtrunA17_Chr7g0243951	77.259	321	70	2	97	417	180	497	0.0	515
Msa1211740	MtrunA17_Chr7g0243951	71.304	115	25	2	1	110	1	112	1.53e-45	164
Msa1211740	MtrunA17_Chr7g0243931	75.701	321	76	1	97	417	186	504	0.0	514
Msa1211740	MtrunA17_Chr7g0243931	68.696	115	28	2	1	110	7	118	2.48e-42	155
Msa1211740	MtrunA17_Chr7g0243861	77.882	321	69	1	97	417	183	501	4.71e-180	511
Msa1211740	MtrunA17_Chr7g0243861	72.807	114	23	2	2	110	5	115	6.15e-47	168

Showing 1 to 10 of 332 entries

Previous1 2 3 4 5…34Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1211740	AT2G15490.3	47.386	306	146	8	106	407	187	481	5.32e-81	257
Msa1211740	AT2G15490.3	36.250	80	44	1	9	81	5	84	5.52e-14	73.9
Msa1211740	AT2G15490.1	46.926	309	146	8	106	407	187	484	1.93e-80	256
Msa1211740	AT2G15490.1	36.250	80	44	1	9	81	5	84	5.37e-14	73.9
Msa1211740	AT4G34131.1	50.000	278	126	7	129	405	216	481	2.13e-79	253
Msa1211740	AT4G34131.1	42.529	87	43	1	3	82	2	88	5.70e-16	80.1
Msa1211740	AT2G15480.2	48.288	292	137	9	123	407	210	494	2.37e-78	251
Msa1211740	AT2G15480.2	30.928	97	60	1	3	92	2	98	1.21e-13	72.8
Msa1211740	AT2G15480.1	46.853	286	140	7	123	407	210	484	1.67e-77	248
Msa1211740	AT2G15480.1	30.928	97	60	1	3	92	2	98	1.24e-13	72.8

Showing 1 to 10 of 149 entries

Previous1 2 3 4 5…15Next

Find 94 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTAGTAAAACTACAAT+GGG	0.395728	8_1:+71475202	Msa1211740:CDS
AAAGGCCAATAGGGGACACG+CGG	0.666736	8_1:+71475282	Msa1211740:CDS
AAATGATAGAGACGAGGGCG+AGG	0.561093	8_1:+71475477	Msa1211740:CDS
AACATTGGCCATGTGATCAT+TGG	0.446631	8_1:-71475664	None:intergenic
AACTACATGAAGTTGGTTAT+TGG	0.174929	8_1:-71474516	None:intergenic
AACTTAGTAAAACTACAATG+GGG	0.781934	8_1:+71475203	Msa1211740:CDS
AAGAGACAGAATTGCTAAAT+TGG	0.283406	8_1:+71475320	Msa1211740:CDS
AAGAGGACTATAGAGGAAGG+TGG	0.653780	8_1:+71475898	Msa1211740:CDS
AAGGGTGAAAGAAAGCAACA+AGG	0.690910	8_1:+71475525	Msa1211740:CDS
AATCGGAGGCAAGAAGTTAT+GGG	0.408679	8_1:+71475137	Msa1211740:CDS

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAAAACTACATGAAGT+TGG	-	chr8_1:71474526-71474545	None:intergenic	30.0%
CTATCAAAACTCAGCTTATT+CGG	+	chr8_1:71474693-71474712	Msa1211740:CDS	30.0%
AATGTCAAAGATGTTAAAGC+TGG	+	chr8_1:71474755-71474774	Msa1211740:CDS	30.0%
TCTTGAAACATTACCTCAAT+AGG	-	chr8_1:71474836-71474855	None:intergenic	30.0%
TTTCTGATATGATGATTCCT+TGG	+	chr8_1:71474876-71474895	Msa1211740:intron	30.0%
TCAGAAACTAAATGATCATG+AGG	-	chr8_1:71475001-71475020	None:intergenic	30.0%
TAACAAGGATGATGAAAGAA+AGG	+	chr8_1:71475264-71475283	Msa1211740:CDS	30.0%
AAGAGACAGAATTGCTAAAT+TGG	+	chr8_1:71475320-71475339	Msa1211740:CDS	30.0%
TAAAATTGTTCGGCAAACAT+TGG	-	chr8_1:71475682-71475701	None:intergenic	30.0%
CCTCTCATTGTAAAATTGTT+CGG	-	chr8_1:71475692-71475711	None:intergenic	30.0%

Showing 1 to 10 of 274 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	71474500	71476231	71474500	ID=Msa1211740;Name=Msa1211740
chr8_1	mRNA	71474500	71476231	71474500	ID=Msa1211740-mRNA-1;Parent=Msa1211740;Name=Msa1211740-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0.5\|0.33\|1\|0\|0\|3\|226\|417
chr8_1	exon	71474500	71474671	71474500	ID=Msa1211740-mRNA-1:exon:23981;Parent=Msa1211740-mRNA-1
chr8_1	exon	71474687	71474841	71474687	ID=Msa1211740-mRNA-1:exon:23982;Parent=Msa1211740-mRNA-1
chr8_1	exon	71475079	71476231	71475079	ID=Msa1211740-mRNA-1:exon:23983;Parent=Msa1211740-mRNA-1
chr8_1	CDS	71474500	71474671	71474500	ID=Msa1211740-mRNA-1:cds;Parent=Msa1211740-mRNA-1
chr8_1	CDS	71474687	71474841	71474687	ID=Msa1211740-mRNA-1:cds;Parent=Msa1211740-mRNA-1
chr8_1	CDS	71475079	71476005	71475079	ID=Msa1211740-mRNA-1:cds;Parent=Msa1211740-mRNA-1
chr8_1	three_prime_UTR	71476006	71476231	71476006	ID=Msa1211740-mRNA-1:three_prime_utr;Parent=Msa1211740-mRNA-1

Gene Sequence

>Msa1211740

ATGGAGTCTCAACAATCCAATAACCAACTTCATGTAGTTTTTCTTCCATATCCAACTCCTGGCCATATGATTCCCATGATAGACACAGCAAGACTATTTGCAAAGCATGGTGTTAATGTTACCATCATCACTACACATGCCAATGCTTCAACATTCCAAGAATCCATAGACAGATACTCTATCAAAACTCAGCTTATTCGGTTCCCTTCATCTCAAGTTGGTCTTCCTGATGGAATTGAAAATGTCAAAGATGTTAAAGCTGGAACATCCTCAGAAATGCTTGGTAAAATCAGTCATGGAATGTTAATGCTCAGAGATCCTATTGAGCTTCGTGATTGGGTGAGGACTACAAATGCTGCCACAGCCTATTTTGAACCAATTTTTGAATCGGAGGCAAGAAGTTATGGGACAATAAGCAATAGTTTTCATGAACTTGAAAGTGATTATGAGAAACTTAGTAAAACTACAATGGGGATTAAGTCTTGGAGTGTAGGACCAGTTTCAACTTGGGCTAACAAGGATGATGAAAGAAAGGCCAATAGGGGACACGCGGAGAAGAACGTTGGAAAAGAGACAGAATTGCTAAATTGGCTCAACTCAAAGCAAAATGAGTCTGTGTTGTATGTAAGTTTTGGAAGCCTTACTAAGCTTTTTCATGCTCAGCTTGTAGAAATTGCACATGGGCTTGAAAAGTCAGGTCATAATTTTATCTGGGTTGTAAGGAAAAATGATAGAGACGAGGGCGAGGAAGGTTTTCTGCAAGATTTTGAGGAAAGGGTGAAAGAAAGCAACAAGGGCTATATCATATGGAATTGGGCACCACAGCTTCTCATATTGAATCACCCTGCAACAGGAGGAATTGTGACTCACTGTGGTTGGAACTCAACACTTGAAAGCATTAGTGTTGGTTTGCCAATGATCACATGGCCAATGTTTGCCGAACAATTTTACAATGAGAGGTTGCTTGTTGATGTTTTGAAGATAGGGATCCCAGTGGGAGCAAAAGAAAACAAGTTATGGAATAGCTTTAGAGTAGAGGCAATGGTTAGAAGGGAAGAGATTGCAAAGGCTGCGGAGATTTTGTTGGGAAATGGTCAAGACAGCAAAGAAATGAGGATGAGAGCAAAAAAGTTTGGCGATGCTGCCAAGAGGACTATAGAGGAAGGTGGACACTCTTACAACAACTTGGTTCAGTTGATAGATGAGCTGAAATCATTGAAGAAATCCAAAGCACTTGGTGAGAAAGCAGATTAG

Protein sequence

>Msa1211740

MESQQSNNQLHVVFLPYPTPGHMIPMIDTARLFAKHGVNVTIITTHANASTFQESIDRYSIKTQLIRFPSSQVGLPDGIENVKDVKAGTSSEMLGKISHGMLMLRDPIELRDWVRTTNAATAYFEPIFESEARSYGTISNSFHELESDYEKLSKTTMGIKSWSVGPVSTWANKDDERKANRGHAEKNVGKETELLNWLNSKQNESVLYVSFGSLTKLFHAQLVEIAHGLEKSGHNFIWVVRKNDRDEGEEGFLQDFEERVKESNKGYIIWNWAPQLLILNHPATGGIVTHCGWNSTLESISVGLPMITWPMFAEQFYNERLLVDVLKIGIPVGAKENKLWNSFRVEAMVRREEIAKAAEILLGNGQDSKEMRMRAKKFGDAAKRTIEEGGHSYNNLVQLIDELKSLKKSKALGEKAD*