Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820650 | XP_024638986.1 | 97.175 | 177 | 5 | 0 | 1 | 177 | 1 | 177 | 1.31e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820650 | sp|Q9FJI1|KAD6_ARATH | 66.467 | 167 | 56 | 0 | 7 | 173 | 10 | 176 | 2.09e-81 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820650 | G7K2Z5 | 97.175 | 177 | 5 | 0 | 1 | 177 | 1 | 177 | 6.27e-123 | 353 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0820650 | 0.812961 | 3.258068e-51 | -8.615850e-47 |
| Msa0009430 | Msa0820650 | 0.813018 | 3.164309e-51 | -8.615850e-47 |
| Msa0037250 | Msa0820650 | 0.817862 | 2.645425e-52 | -8.615850e-47 |
| Msa0056430 | Msa0820650 | 0.811443 | 6.983706e-51 | -8.615850e-47 |
| Msa0056470 | Msa0820650 | 0.855912 | 4.588125e-62 | -8.615850e-47 |
| Msa0072420 | Msa0820650 | 0.842727 | 2.167708e-58 | -8.615850e-47 |
| Msa0090360 | Msa0820650 | 0.820413 | 6.951038e-53 | -8.615850e-47 |
| Msa0607050 | Msa0820650 | 0.819218 | 1.303533e-52 | -8.615850e-47 |
| Msa0615710 | Msa0820650 | 0.821093 | 4.849613e-53 | -8.615850e-47 |
| Msa0623790 | Msa0820650 | 0.812333 | 4.468588e-51 | -8.615850e-47 |
| Msa0647500 | Msa0820650 | 0.803578 | 3.260482e-49 | -8.615850e-47 |
| Msa0651050 | Msa0820650 | 0.804250 | 2.363838e-49 | -8.615850e-47 |
| Msa0661300 | Msa0820650 | 0.840677 | 7.528456e-58 | -8.615850e-47 |
| Msa0665860 | Msa0820650 | 0.825489 | 4.559511e-54 | -8.615850e-47 |
| Msa0690150 | Msa0820650 | 0.819934 | 8.945954e-53 | -8.615850e-47 |
| Msa0709400 | Msa0820650 | 0.832025 | 1.196090e-55 | -8.615850e-47 |
| Msa0788850 | Msa0820650 | 0.808914 | 2.450565e-50 | -8.615850e-47 |
| Msa0820650 | Msa0963270 | 0.801298 | 9.618411e-49 | -8.615850e-47 |
| Msa0820650 | Msa1031660 | 0.803817 | 2.908800e-49 | -8.615850e-47 |
| Msa0820650 | Msa1070720 | 0.801222 | 9.967157e-49 | -8.615850e-47 |
| Msa0820650 | Msa1081930 | 0.818410 | 1.988736e-52 | -8.615850e-47 |
| Msa0820650 | Msa1124960 | 0.818511 | 1.886870e-52 | -8.615850e-47 |
| Msa0820650 | Msa1130980 | 0.810642 | 1.041341e-50 | -8.615850e-47 |
| Msa0820650 | Msa1160590 | 0.808266 | 3.369460e-50 | -8.615850e-47 |
| Msa0820650 | Msa1165940 | 0.847254 | 1.298789e-59 | -8.615850e-47 |
| Msa0820650 | Msa1244600 | 0.804960 | 1.681144e-49 | -8.615850e-47 |
| Msa0820650 | Msa1254730 | 0.803948 | 2.731786e-49 | -8.615850e-47 |
| Msa0820650 | Msa1269790 | 0.802711 | 4.927782e-49 | -8.615850e-47 |
| Msa0820650 | Msa1357620 | 0.820150 | 7.986980e-53 | -8.615850e-47 |
| Msa0820650 | Msa1418340 | 0.805954 | 1.040054e-49 | -8.615850e-47 |
| Msa0820650 | Msa1419870 | 0.801419 | 9.086494e-49 | -8.615850e-47 |
| Msa0820650 | Msa1432420 | 0.817622 | 2.997201e-52 | -8.615850e-47 |
| Msa0820650 | Msa1433390 | 0.818920 | 1.523450e-52 | -8.615850e-47 |
| Msa0820650 | Msa1434420 | -0.814104 | 1.825773e-51 | -8.615850e-47 |
| Msa0137840 | Msa0820650 | 0.810888 | 9.215548e-51 | -8.615850e-47 |
| Msa0140650 | Msa0820650 | 0.801835 | 7.464796e-49 | -8.615850e-47 |
| Msa0140820 | Msa0820650 | 0.818122 | 2.311670e-52 | -8.615850e-47 |
| Msa0149200 | Msa0820650 | 0.833141 | 6.324312e-56 | -8.615850e-47 |
| Msa0150300 | Msa0820650 | 0.824662 | 7.147859e-54 | -8.615850e-47 |
| Msa0184040 | Msa0820650 | 0.818850 | 1.580719e-52 | -8.615850e-47 |
| Msa0209350 | Msa0820650 | 0.800875 | 1.173898e-48 | -8.615850e-47 |
| Msa0229230 | Msa0820650 | 0.809612 | 1.736464e-50 | -8.615850e-47 |
| Msa0231980 | Msa0820650 | 0.813873 | 2.053081e-51 | -8.615850e-47 |
| Msa0232050 | Msa0820650 | 0.820334 | 7.245076e-53 | -8.615850e-47 |
| Msa0366890 | Msa0820650 | 0.816369 | 5.731160e-52 | -8.615850e-47 |
| Msa0376310 | Msa0820650 | 0.800659 | 1.298929e-48 | -8.615850e-47 |
| Msa0380300 | Msa0820650 | 0.802942 | 4.416258e-49 | -8.615850e-47 |
| Msa0388700 | Msa0820650 | 0.804288 | 2.320835e-49 | -8.615850e-47 |
| Msa0398670 | Msa0820650 | 0.818953 | 1.497562e-52 | -8.615850e-47 |
| Msa0454360 | Msa0820650 | 0.805507 | 1.291076e-49 | -8.615850e-47 |
| Msa0471440 | Msa0820650 | 0.803530 | 3.336903e-49 | -8.615850e-47 |
| Msa0272300 | Msa0820650 | 0.816288 | 5.974111e-52 | -8.615850e-47 |
| Msa0334550 | Msa0820650 | 0.826776 | 2.253680e-54 | -8.615850e-47 |
| Msa0512340 | Msa0820650 | 0.806292 | 8.830974e-50 | -8.615850e-47 |
| Msa0521050 | Msa0820650 | 0.827997 | 1.148398e-54 | -8.615850e-47 |
| Msa0548240 | Msa0820650 | 0.822128 | 2.795378e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820650 | MtrunA17_Chr5g0440651 | 97.175 | 177 | 5 | 0 | 1 | 177 | 1 | 177 | 1.21e-126 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820650 | AT5G60340.1 | 66.467 | 167 | 56 | 0 | 7 | 173 | 10 | 176 | 2.13e-82 | 241 |
Find 58 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTAGTATTTATGTTATA+TGG | 0.199000 | 5_3:+58176818 | Msa0820650:three_prime_UTR |
| GAGAAGGAAACCAAACATTT+TGG | 0.273161 | 5_3:+58175862 | Msa0820650:CDS |
| CCACATCAATATTGGAGATT+TGG | 0.293429 | 5_3:+58175952 | Msa0820650:CDS |
| TTACATTCTTAATGAAGATT+TGG | 0.302756 | 5_3:+58176021 | Msa0820650:CDS |
| CTGTAGTATTTATGTTATAT+GGG | 0.337868 | 5_3:+58176819 | Msa0820650:three_prime_UTR |
| CAGCTCAACCACATCAATAT+TGG | 0.350514 | 5_3:+58175944 | Msa0820650:CDS |
| GCTCAGACGGTCATACAAAA+TGG | 0.376389 | 5_3:-58176466 | None:intergenic |
| GATTTCACATTCGACGTTGT+TGG | 0.388413 | 5_3:-58176613 | None:intergenic |
| TGACAGATTGGATCAGGAAT+TGG | 0.398426 | 5_3:+58176739 | Msa0820650:CDS |
| GTACCAGTCACCAAAATGTT+TGG | 0.424577 | 5_3:-58175872 | None:intergenic |
| CAATTCTGACAGATTGGATC+AGG | 0.426937 | 5_3:+58176733 | Msa0820650:CDS |
| TGATGAACTTGAGGATGTTA+TGG | 0.431142 | 5_3:+58176353 | Msa0820650:CDS |
| GTGGTTGTCTTTCCTGTCCC+TGG | 0.431186 | 5_3:-58175896 | None:intergenic |
| GAATTGGCCCATCCCAGTAT+AGG | 0.434368 | 5_3:+58176755 | Msa0820650:CDS |
| GAAGAGAGCATACCAGTAGA+TGG | 0.436236 | 5_3:-58174391 | None:intergenic |
| AATTGGCCCATCCCAGTATA+GGG | 0.447984 | 5_3:+58176756 | Msa0820650:CDS |
| AGAAGAACTTGCATGATGGC+TGG | 0.459493 | 5_3:+58175981 | Msa0820650:CDS |
| GGGAATATTGTGGACTATCA+TGG | 0.474310 | 5_3:+58176384 | Msa0820650:CDS |
| GTGATTTCTTTCCCGAGCGA+TGG | 0.476262 | 5_3:+58176409 | Msa0820650:CDS |
| ATGTTGCAATTCTGACAGAT+TGG | 0.480380 | 5_3:+58176727 | Msa0820650:CDS |
| TTGAAATACGGCGGTGACTG+TGG | 0.491701 | 5_3:-58174346 | None:intergenic |
| ACTTGAGGATGTTATGGAAG+AGG | 0.497760 | 5_3:+58176359 | Msa0820650:CDS |
| CGAGCGATGGTTTGATTGTG+TGG | 0.514486 | 5_3:+58176422 | Msa0820650:CDS |
| GCCGGAAAACATGGCGCATG+TGG | 0.515377 | 5_3:-58176936 | None:intergenic |
| TCTTCATCATCTCCATCTAC+TGG | 0.516184 | 5_3:+58174379 | Msa0820650:five_prime_UTR |
| ACCATAAAAGATCAATGTGC+TGG | 0.523607 | 5_3:-58176958 | None:intergenic |
| CTTGAGGATGTTATGGAAGA+GGG | 0.525425 | 5_3:+58176360 | Msa0820650:CDS |
| CACACAATCAAACCATCGCT+CGG | 0.528082 | 5_3:-58176421 | None:intergenic |
| CACACTTTCCGATAAAGCTA+TGG | 0.535312 | 5_3:-58175811 | None:intergenic |
| GGAAGAGGGAGGGAATATTG+TGG | 0.540361 | 5_3:+58176374 | Msa0820650:CDS |
| TAAAAGATCAATGTGCTGGC+CGG | 0.540808 | 5_3:-58176954 | None:intergenic |
| AAAATACCCTATACTGGGAT+GGG | 0.545741 | 5_3:-58176762 | None:intergenic |
| CGGAAAGTGTGTCGTAGTCA+TGG | 0.551753 | 5_3:+58175823 | Msa0820650:exon |
| TGTAGTATTTATGTTATATG+GGG | 0.553922 | 5_3:+58176820 | Msa0820650:three_prime_UTR |
| GAGGATGTTATGGAAGAGGG+AGG | 0.559657 | 5_3:+58176363 | Msa0820650:CDS |
| TGTATGACCGTCTGAGCAGA+AGG | 0.560928 | 5_3:+58176472 | Msa0820650:CDS |
| GACGGCGGAAGCTTGAAATA+CGG | 0.563110 | 5_3:-58174358 | None:intergenic |
| AATGTGCTGGCCGGAAAACA+TGG | 0.564483 | 5_3:-58176945 | None:intergenic |
| ACACAATCAAACCATCGCTC+GGG | 0.566646 | 5_3:-58176420 | None:intergenic |
| GTGACTGGTACACCAGGGAC+AGG | 0.576936 | 5_3:+58175884 | Msa0820650:CDS |
| GTAGGTGTGTGATGAACTTG+AGG | 0.579640 | 5_3:+58176344 | Msa0820650:intron |
| TGAAATACGGCGGTGACTGT+GGG | 0.583399 | 5_3:-58174345 | None:intergenic |
| GAAGAACTTGCATGATGGCT+GGG | 0.584441 | 5_3:+58175982 | Msa0820650:CDS |
| TTTGTAGTACGATACGAAAG+TGG | 0.595653 | 5_3:+58176885 | Msa0820650:three_prime_UTR |
| AAAGAGAAGAACTTGCATGA+TGG | 0.601786 | 5_3:+58175977 | Msa0820650:CDS |
| TGACATACCTTCTGCTCAGA+CGG | 0.610039 | 5_3:-58176479 | None:intergenic |
| AGGATGTTATGGAAGAGGGA+GGG | 0.612954 | 5_3:+58176364 | Msa0820650:CDS |
| TGAAAGACAGTATCAAGAGA+AGG | 0.619884 | 5_3:+58175846 | Msa0820650:CDS |
| TTCAGCTAGAGCAGTTGACG+TGG | 0.628337 | 5_3:-58175915 | None:intergenic |
| CCAAATCTCCAATATTGATG+TGG | 0.645106 | 5_3:-58175952 | None:intergenic |
| GTAGATGGAGATGATGAAGA+CGG | 0.651253 | 5_3:-58174376 | None:intergenic |
| GCGCATGTGGAATAAAGCAA+CGG | 0.660980 | 5_3:-58176923 | None:intergenic |
| GGCTAAAGAAAGTTACGCGG+AGG | 0.677847 | 5_3:+58176656 | Msa0820650:CDS |
| ATTGATGTGGTTGAGCTGAG+TGG | 0.681056 | 5_3:-58175939 | None:intergenic |
| CATGTGGAATAAAGCAACGG+TGG | 0.691850 | 5_3:-58176920 | None:intergenic |
| GGCGGAAGCTTGAAATACGG+CGG | 0.701245 | 5_3:-58174355 | None:intergenic |
| GATGGAGATGATGAAGACGG+CGG | 0.722757 | 5_3:-58174373 | None:intergenic |
| GGAGGCTAAAGAAAGTTACG+CGG | 0.771874 | 5_3:+58176653 | Msa0820650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATTAACAGATTA+GGG | - | chr5_3:58174485-58174504 | None:intergenic | 10.0% |
| !! | ATAAAAAAAATTAACAGATT+AGG | - | chr5_3:58174486-58174505 | None:intergenic | 10.0% |
| !!! | TAGTATACATATATTATTTT+TGG | + | chr5_3:58174859-58174878 | Msa0820650:intron | 10.0% |
| !! | AATATATAAAGATTAACAAA+TGG | - | chr5_3:58176295-58176314 | None:intergenic | 10.0% |
| !! | TTTGTTAATCTTTATATATT+AGG | + | chr5_3:58176295-58176314 | Msa0820650:intron | 10.0% |
| !!! | TATTTTTAGTATAGAATAGT+AGG | + | chr5_3:58174719-58174738 | Msa0820650:intron | 15.0% |
| !!! | ACATATATTATTTTTGGTTT+AGG | + | chr5_3:58174865-58174884 | Msa0820650:intron | 15.0% |
| !!! | CATATATTATTTTTGGTTTA+GGG | + | chr5_3:58174866-58174885 | Msa0820650:intron | 15.0% |
| !!! | TATTTTATATTTTACTTGGA+AGG | + | chr5_3:58175539-58175558 | Msa0820650:intron | 15.0% |
| !!! | TATTTTTGATGAAAAGTATT+AGG | + | chr5_3:58176779-58176798 | Msa0820650:three_prime_UTR | 15.0% |
| !!! | ATTTTTGATGAAAAGTATTA+GGG | + | chr5_3:58176780-58176799 | Msa0820650:three_prime_UTR | 15.0% |
| !! | TTTAGAGGGAAATTAAAAAT+TGG | - | chr5_3:58174579-58174598 | None:intergenic | 20.0% |
| !!! | TAATTGTTATTGATATCTTG+TGG | + | chr5_3:58174926-58174945 | Msa0820650:intron | 20.0% |
| !!! | AATTGTTATTGATATCTTGT+GGG | + | chr5_3:58174927-58174946 | Msa0820650:intron | 20.0% |
| !!! | TCATTTGATTAGTTTTGATA+AGG | + | chr5_3:58174984-58175003 | Msa0820650:intron | 20.0% |
| !! | AAATGTTATAATAAGCATAG+TGG | + | chr5_3:58175137-58175156 | Msa0820650:intron | 20.0% |
| !! | CAAAATAAATACACAGATTT+GGG | - | chr5_3:58175468-58175487 | None:intergenic | 20.0% |
| !! | TCAAAATAAATACACAGATT+TGG | - | chr5_3:58175469-58175488 | None:intergenic | 20.0% |
| !!! | AAAAAAATCCATAGCTTTAT+CGG | + | chr5_3:58175803-58175822 | Msa0820650:five_prime_UTR | 20.0% |
| !! | TTACATTCTTAATGAAGATT+TGG | + | chr5_3:58176021-58176040 | Msa0820650:CDS | 20.0% |
| !!! | CTTAAATTTTTATATACCCA+AGG | - | chr5_3:58176111-58176130 | None:intergenic | 20.0% |
| !!! | TTTTTGATGAAAAGTATTAG+GGG | + | chr5_3:58176781-58176800 | Msa0820650:three_prime_UTR | 20.0% |
| !! | TCTGTAGTATTTATGTTATA+TGG | + | chr5_3:58176818-58176837 | Msa0820650:three_prime_UTR | 20.0% |
| !! | CTGTAGTATTTATGTTATAT+GGG | + | chr5_3:58176819-58176838 | Msa0820650:three_prime_UTR | 20.0% |
| !! | TGTAGTATTTATGTTATATG+GGG | + | chr5_3:58176820-58176839 | Msa0820650:three_prime_UTR | 20.0% |
| !!! | ACTAAGACACTACTATTTTT+TGG | - | chr5_3:58174263-58174282 | None:intergenic | 25.0% |
| !!! | GCACTAGATTTTATTTTGTT+TGG | + | chr5_3:58174290-58174309 | Msa0820650:five_prime_UTR | 25.0% |
| ! | GGAAAATTGAAAAGGTAAAA+GGG | - | chr5_3:58174419-58174438 | None:intergenic | 25.0% |
| ! | TTTGGTTAAGAGCAAAAATT+GGG | - | chr5_3:58174442-58174461 | None:intergenic | 25.0% |
| !!! | TTTTGGTTAAGAGCAAAAAT+TGG | - | chr5_3:58174443-58174462 | None:intergenic | 25.0% |
| !!! | TATTCATAAATCTAGGGTTT+TGG | - | chr5_3:58174460-58174479 | None:intergenic | 25.0% |
| ! | AGGGTTTATTCATAAATCTA+GGG | - | chr5_3:58174466-58174485 | None:intergenic | 25.0% |
| ! | TAGGGTTTATTCATAAATCT+AGG | - | chr5_3:58174467-58174486 | None:intergenic | 25.0% |
| ! | ATTCAACTAAGCTGTATATA+GGG | - | chr5_3:58174602-58174621 | None:intergenic | 25.0% |
| ! | AATTCAACTAAGCTGTATAT+AGG | - | chr5_3:58174603-58174622 | None:intergenic | 25.0% |
| ! | TACTATACAATCTTGTCAAA+TGG | - | chr5_3:58174844-58174863 | None:intergenic | 25.0% |
| ! | TTGGTATTTAACCAAATCAT+TGG | + | chr5_3:58175022-58175041 | Msa0820650:intron | 25.0% |
| !! | TTTTCGCTTAGATTCTTTTT+AGG | + | chr5_3:58175189-58175208 | Msa0820650:intron | 25.0% |
| ! | AAATAACTAACTACACACAT+TGG | + | chr5_3:58175338-58175357 | Msa0820650:intron | 25.0% |
| ! | GTAATCATACCATAAAAGTA+AGG | - | chr5_3:58175370-58175389 | None:intergenic | 25.0% |
| !! | GTTGTTGTATTTTACTTACA+AGG | + | chr5_3:58175645-58175664 | Msa0820650:intron | 25.0% |
| !! | TATTTGTGTCTGAAATTGAA+TGG | + | chr5_3:58175752-58175771 | Msa0820650:intron | 25.0% |
| ! | TAAGCTACCAATTTATATAC+TGG | + | chr5_3:58176044-58176063 | Msa0820650:intron | 25.0% |
| ! | CAAACAAAACAATACAAGAA+CGG | - | chr5_3:58176073-58176092 | None:intergenic | 25.0% |
| ! | AAAATATTGAAGAGTCATGA+GGG | - | chr5_3:58176219-58176238 | None:intergenic | 25.0% |
| ! | TTGGCATACTATTTACTAAA+TGG | + | chr5_3:58176237-58176256 | Msa0820650:intron | 25.0% |
| !!! | GGTTTTATGTGTATATCTTT+TGG | + | chr5_3:58176316-58176335 | Msa0820650:intron | 25.0% |
| !!! | GTATATCTTTTGGTTTTTGT+AGG | + | chr5_3:58176326-58176345 | Msa0820650:intron | 25.0% |
| ! | GCAATTCTATTGTATATTTC+AGG | + | chr5_3:58176533-58176552 | Msa0820650:intron | 25.0% |
| !!! | AGACACTACTATTTTTTGGT+GGG | - | chr5_3:58174259-58174278 | None:intergenic | 30.0% |
| !!! | AAGACACTACTATTTTTTGG+TGG | - | chr5_3:58174260-58174279 | None:intergenic | 30.0% |
| GGGAAAATTGAAAAGGTAAA+AGG | - | chr5_3:58174420-58174439 | None:intergenic | 30.0% | |
| AAATTGGGGGAAAATTGAAA+AGG | - | chr5_3:58174427-58174446 | None:intergenic | 30.0% | |
| TTGGTTAAGAGCAAAAATTG+GGG | - | chr5_3:58174441-58174460 | None:intergenic | 30.0% | |
| ! | TGCTTTTCAATTCATGCAAT+TGG | + | chr5_3:58174507-58174526 | Msa0820650:intron | 30.0% |
| ! | GCTTTTCAATTCATGCAATT+GGG | + | chr5_3:58174508-58174527 | Msa0820650:intron | 30.0% |
| GTGATAGAAACATAAGAACA+GGG | - | chr5_3:58174630-58174649 | None:intergenic | 30.0% | |
| TGTGATAGAAACATAAGAAC+AGG | - | chr5_3:58174631-58174650 | None:intergenic | 30.0% | |
| ! | CTTATGTTTCTATCACAAAG+AGG | + | chr5_3:58174634-58174653 | Msa0820650:intron | 30.0% |
| !!! | GATTAGTTTTGATAAGGCAA+CGG | + | chr5_3:58174990-58175009 | Msa0820650:intron | 30.0% |
| TGCGTAGTATTTCATTAGAT+AGG | + | chr5_3:58175082-58175101 | Msa0820650:intron | 30.0% | |
| GCGTAGTATTTCATTAGATA+GGG | + | chr5_3:58175083-58175102 | Msa0820650:intron | 30.0% | |
| !! | TTGTGCTTTGATTTTCTTTC+AGG | - | chr5_3:58175116-58175135 | None:intergenic | 30.0% |
| GTATTAGACTATTAGTAGCT+GGG | - | chr5_3:58175392-58175411 | None:intergenic | 30.0% | |
| AGTATTAGACTATTAGTAGC+TGG | - | chr5_3:58175393-58175412 | None:intergenic | 30.0% | |
| AATTTCCAAACAAAGTGAAC+AGG | + | chr5_3:58175488-58175507 | Msa0820650:intron | 30.0% | |
| TGTTCTATCATAACCACATT+TGG | - | chr5_3:58175569-58175588 | None:intergenic | 30.0% | |
| GTGGTTATGATAGAACATTA+TGG | + | chr5_3:58175572-58175591 | Msa0820650:intron | 30.0% | |
| !! | CGTTCTTGTATTGTTTTGTT+TGG | + | chr5_3:58176071-58176090 | Msa0820650:intron | 30.0% |
| CAAAATATTGAAGAGTCATG+AGG | - | chr5_3:58176220-58176239 | None:intergenic | 30.0% | |
| ! | CTCATGACTCTTCAATATTT+TGG | + | chr5_3:58176218-58176237 | Msa0820650:intron | 30.0% |
| ! | CAAATGGTCTTTTATCACAA+CGG | - | chr5_3:58176279-58176298 | None:intergenic | 30.0% |
| !!! | AATCTTTCAAGTTTTGCTTG+AGG | + | chr5_3:58176632-58176651 | Msa0820650:CDS | 30.0% |
| CATCAAAAATACCCTATACT+GGG | - | chr5_3:58176770-58176789 | None:intergenic | 30.0% | |
| TCATCAAAAATACCCTATAC+TGG | - | chr5_3:58176771-58176790 | None:intergenic | 30.0% | |
| TGGTTAAGAGCAAAAATTGG+GGG | - | chr5_3:58174440-58174459 | None:intergenic | 35.0% | |
| ! | GATTAGTTGCATTACGTTGT+TGG | + | chr5_3:58174548-58174567 | Msa0820650:intron | 35.0% |
| AGCTGTATATAGGGTTTAGA+GGG | - | chr5_3:58174593-58174612 | None:intergenic | 35.0% | |
| AAGCTGTATATAGGGTTTAG+AGG | - | chr5_3:58174594-58174613 | None:intergenic | 35.0% | |
| ACTTCACAAATTGACCATGA+AGG | + | chr5_3:58174781-58174800 | Msa0820650:intron | 35.0% | |
| !! | AGATTTTTCGACAACCTTCA+TGG | - | chr5_3:58174798-58174817 | None:intergenic | 35.0% |
| ! | TATGTGTCTTTAGGTTTGGA+GGG | + | chr5_3:58174889-58174908 | Msa0820650:intron | 35.0% |
| ! | TTGTGGGTTAAGAGTGATTA+AGG | + | chr5_3:58174943-58174962 | Msa0820650:intron | 35.0% |
| !! | TGGTCTCATCCTTACTTTTA+TGG | + | chr5_3:58175358-58175377 | Msa0820650:intron | 35.0% |
| ! | TTCTGTGCTCAATTTGGTTT+GGG | - | chr5_3:58175420-58175439 | None:intergenic | 35.0% |
| TTTCTGTGCTCAATTTGGTT+TGG | - | chr5_3:58175421-58175440 | None:intergenic | 35.0% | |
| !! | GATTGTTTCTGTGCTCAATT+TGG | - | chr5_3:58175426-58175445 | None:intergenic | 35.0% |
| GTAAACCTGTTCACTTTGTT+TGG | - | chr5_3:58175496-58175515 | None:intergenic | 35.0% | |
| AACAAAGTGAACAGGTTTAC+AGG | + | chr5_3:58175496-58175515 | Msa0820650:intron | 35.0% | |
| ACAAAGTGAACAGGTTTACA+GGG | + | chr5_3:58175497-58175516 | Msa0820650:intron | 35.0% | |
| TGAAAGACAGTATCAAGAGA+AGG | + | chr5_3:58175846-58175865 | Msa0820650:CDS | 35.0% | |
| ! | GAGAAGGAAACCAAACATTT+TGG | + | chr5_3:58175862-58175881 | Msa0820650:CDS | 35.0% |
| !! | AAACCAAACATTTTGGTGAC+TGG | + | chr5_3:58175869-58175888 | Msa0820650:CDS | 35.0% |
| CCAAATCTCCAATATTGATG+TGG | - | chr5_3:58175955-58175974 | None:intergenic | 35.0% | |
| CCACATCAATATTGGAGATT+TGG | + | chr5_3:58175952-58175971 | Msa0820650:CDS | 35.0% | |
| AAAGAGAAGAACTTGCATGA+TGG | + | chr5_3:58175977-58175996 | Msa0820650:CDS | 35.0% | |
| ACGGTCTCCAGTATATAAAT+TGG | - | chr5_3:58176054-58176073 | None:intergenic | 35.0% | |
| ACAGGAGTAACATGACTATT+GGG | - | chr5_3:58176161-58176180 | None:intergenic | 35.0% | |
| TACAGGAGTAACATGACTAT+TGG | - | chr5_3:58176162-58176181 | None:intergenic | 35.0% | |
| GCAAAAGGACTAAACATTAC+AGG | - | chr5_3:58176179-58176198 | None:intergenic | 35.0% | |
| TGATGAACTTGAGGATGTTA+TGG | + | chr5_3:58176353-58176372 | Msa0820650:CDS | 35.0% | |
| ATGTTGCAATTCTGACAGAT+TGG | + | chr5_3:58176727-58176746 | Msa0820650:CDS | 35.0% | |
| AAAATACCCTATACTGGGAT+GGG | - | chr5_3:58176765-58176784 | None:intergenic | 35.0% | |
| AAAAATACCCTATACTGGGA+TGG | - | chr5_3:58176766-58176785 | None:intergenic | 35.0% | |
| TTTGTAGTACGATACGAAAG+TGG | + | chr5_3:58176885-58176904 | Msa0820650:three_prime_UTR | 35.0% | |
| ACCATAAAAGATCAATGTGC+TGG | - | chr5_3:58176961-58176980 | None:intergenic | 35.0% | |
| GTAGATGGAGATGATGAAGA+CGG | - | chr5_3:58174379-58174398 | None:intergenic | 40.0% | |
| TCTTCATCATCTCCATCTAC+TGG | + | chr5_3:58174379-58174398 | Msa0820650:five_prime_UTR | 40.0% | |
| ATCTTGTCAAATGGTGACCA+TGG | - | chr5_3:58174835-58174854 | None:intergenic | 40.0% | |
| ! | GGTTTAGGGTATGTGTCTTT+AGG | + | chr5_3:58174880-58174899 | Msa0820650:intron | 40.0% |
| ! | AGGGTATGTGTCTTTAGGTT+TGG | + | chr5_3:58174885-58174904 | Msa0820650:intron | 40.0% |
| ! | GTATGTGTCTTTAGGTTTGG+AGG | + | chr5_3:58174888-58174907 | Msa0820650:intron | 40.0% |
| ! | ATGTGTCTTTAGGTTTGGAG+GGG | + | chr5_3:58174890-58174909 | Msa0820650:intron | 40.0% |
| CACAGATTTGGGTGATTCAT+AGG | - | chr5_3:58175457-58175476 | None:intergenic | 40.0% | |
| CAAAGTGAACAGGTTTACAG+GGG | + | chr5_3:58175498-58175517 | Msa0820650:intron | 40.0% | |
| CTTGGAAGGAATTCCAAATG+TGG | + | chr5_3:58175553-58175572 | Msa0820650:intron | 40.0% | |
| CACACTTTCCGATAAAGCTA+TGG | - | chr5_3:58175814-58175833 | None:intergenic | 40.0% | |
| GTACCAGTCACCAAAATGTT+TGG | - | chr5_3:58175875-58175894 | None:intergenic | 40.0% | |
| CAGCTCAACCACATCAATAT+TGG | + | chr5_3:58175944-58175963 | Msa0820650:CDS | 40.0% | |
| AGGAGTAACATGACTATTGG+GGG | - | chr5_3:58176159-58176178 | None:intergenic | 40.0% | |
| CAGGAGTAACATGACTATTG+GGG | - | chr5_3:58176160-58176179 | None:intergenic | 40.0% | |
| TGGTTAAGGATGGATGCAAA+AGG | - | chr5_3:58176194-58176213 | None:intergenic | 40.0% | |
| ATTGAAGAGTCATGAGGGAA+TGG | - | chr5_3:58176214-58176233 | None:intergenic | 40.0% | |
| ACTTGAGGATGTTATGGAAG+AGG | + | chr5_3:58176359-58176378 | Msa0820650:CDS | 40.0% | |
| CTTGAGGATGTTATGGAAGA+GGG | + | chr5_3:58176360-58176379 | Msa0820650:CDS | 40.0% | |
| ! | GGGAATATTGTGGACTATCA+TGG | + | chr5_3:58176384-58176403 | Msa0820650:CDS | 40.0% |
| TTTCTTCATCTCTGTGACAG+AGG | + | chr5_3:58176570-58176589 | Msa0820650:intron | 40.0% | |
| TTCTTCATCTCTGTGACAGA+GGG | + | chr5_3:58176571-58176590 | Msa0820650:intron | 40.0% | |
| GATTTCACATTCGACGTTGT+TGG | - | chr5_3:58176616-58176635 | None:intergenic | 40.0% | |
| !!! | CTTTCAAGTTTTGCTTGAGG+AGG | + | chr5_3:58176635-58176654 | Msa0820650:CDS | 40.0% |
| CAATTCTGACAGATTGGATC+AGG | + | chr5_3:58176733-58176752 | Msa0820650:CDS | 40.0% | |
| TGACAGATTGGATCAGGAAT+TGG | + | chr5_3:58176739-58176758 | Msa0820650:CDS | 40.0% | |
| ! | TAAAAGATCAATGTGCTGGC+CGG | - | chr5_3:58176957-58176976 | None:intergenic | 40.0% |
| ! | GCCAGCACATTGATCTTTTA+TGG | + | chr5_3:58176957-58176976 | Msa0820650:three_prime_UTR | 40.0% |
| ! | GAAGAGAGCATACCAGTAGA+TGG | - | chr5_3:58174394-58174413 | None:intergenic | 45.0% |
| CCTAGTGTTATCCATTGCCT+CGG | + | chr5_3:58174749-58174768 | Msa0820650:intron | 45.0% | |
| GGTTGTCGAAAAATCTGCCA+CGG | + | chr5_3:58174802-58174821 | Msa0820650:intron | 45.0% | |
| AAGGCAACGGATGTGAAACT+TGG | + | chr5_3:58175003-58175022 | Msa0820650:intron | 45.0% | |
| ! | CACGAGACTAGCCAATGATT+TGG | - | chr5_3:58175036-58175055 | None:intergenic | 45.0% |
| !! | CAAATCATTGGCTAGTCTCG+TGG | + | chr5_3:58175034-58175053 | Msa0820650:intron | 45.0% |
| TTGGGCTAAATTGAGTGCTC+AGG | + | chr5_3:58175057-58175076 | Msa0820650:intron | 45.0% | |
| AAGCCTCATCACACTAAGTG+CGG | - | chr5_3:58175621-58175640 | None:intergenic | 45.0% | |
| !! | ATTTTGGTGACTGGTACACC+AGG | + | chr5_3:58175878-58175897 | Msa0820650:CDS | 45.0% |
| !! | TTTTGGTGACTGGTACACCA+GGG | + | chr5_3:58175879-58175898 | Msa0820650:CDS | 45.0% |
| ATTGATGTGGTTGAGCTGAG+TGG | - | chr5_3:58175942-58175961 | None:intergenic | 45.0% | |
| AGAAGAACTTGCATGATGGC+TGG | + | chr5_3:58175981-58176000 | Msa0820650:CDS | 45.0% | |
| GAAGAACTTGCATGATGGCT+GGG | + | chr5_3:58175982-58176001 | Msa0820650:CDS | 45.0% | |
| CATGAGGGAATGGTTAAGGA+TGG | - | chr5_3:58176204-58176223 | None:intergenic | 45.0% | |
| GAGTCATGAGGGAATGGTTA+AGG | - | chr5_3:58176208-58176227 | None:intergenic | 45.0% | |
| GTAGGTGTGTGATGAACTTG+AGG | + | chr5_3:58176344-58176363 | Msa0820650:intron | 45.0% | |
| AGGATGTTATGGAAGAGGGA+GGG | + | chr5_3:58176364-58176383 | Msa0820650:CDS | 45.0% | |
| ACACAATCAAACCATCGCTC+GGG | - | chr5_3:58176423-58176442 | None:intergenic | 45.0% | |
| CACACAATCAAACCATCGCT+CGG | - | chr5_3:58176424-58176443 | None:intergenic | 45.0% | |
| GCTCAGACGGTCATACAAAA+TGG | - | chr5_3:58176469-58176488 | None:intergenic | 45.0% | |
| TGACATACCTTCTGCTCAGA+CGG | - | chr5_3:58176482-58176501 | None:intergenic | 45.0% | |
| GGAGGCTAAAGAAAGTTACG+CGG | + | chr5_3:58176653-58176672 | Msa0820650:CDS | 45.0% | |
| AATTGGCCCATCCCAGTATA+GGG | + | chr5_3:58176756-58176775 | Msa0820650:CDS | 45.0% | |
| CATGTGGAATAAAGCAACGG+TGG | - | chr5_3:58176923-58176942 | None:intergenic | 45.0% | |
| GCGCATGTGGAATAAAGCAA+CGG | - | chr5_3:58176926-58176945 | None:intergenic | 45.0% | |
| !! | AATATAAAATAAAATAAACA+GGG | - | chr5_3:58175530-58175549 | None:intergenic | 5.0% |
| !! | AAATATAAAATAAAATAAAC+AGG | - | chr5_3:58175531-58175550 | None:intergenic | 5.0% |
| !!! | ATTTTATTTTATATTTTACT+TGG | + | chr5_3:58175535-58175554 | Msa0820650:intron | 5.0% |
| TGAAATACGGCGGTGACTGT+GGG | - | chr5_3:58174348-58174367 | None:intergenic | 50.0% | |
| TTGAAATACGGCGGTGACTG+TGG | - | chr5_3:58174349-58174368 | None:intergenic | 50.0% | |
| GACGGCGGAAGCTTGAAATA+CGG | - | chr5_3:58174361-58174380 | None:intergenic | 50.0% | |
| GATGGAGATGATGAAGACGG+CGG | - | chr5_3:58174376-58174395 | None:intergenic | 50.0% | |
| CCGAGGCAATGGATAACACT+AGG | - | chr5_3:58174752-58174771 | None:intergenic | 50.0% | |
| !! | TGTGAAGTACAGAAGCACCG+AGG | - | chr5_3:58174769-58174788 | None:intergenic | 50.0% |
| !! | TCATTGGCTAGTCTCGTGGT+TGG | + | chr5_3:58175038-58175057 | Msa0820650:intron | 50.0% |
| !! | CATTGGCTAGTCTCGTGGTT+GGG | + | chr5_3:58175039-58175058 | Msa0820650:intron | 50.0% |
| AGTGAACAGGTTTACAGGGG+AGG | + | chr5_3:58175501-58175520 | Msa0820650:intron | 50.0% | |
| CTCATCACACTAAGTGCGGT+CGG | - | chr5_3:58175617-58175636 | None:intergenic | 50.0% | |
| GCACTTAGTGTGATGAGGCT+TGG | + | chr5_3:58175620-58175639 | Msa0820650:intron | 50.0% | |
| ! | CGGAAAGTGTGTCGTAGTCA+TGG | + | chr5_3:58175823-58175842 | Msa0820650:exon | 50.0% |
| TTCAGCTAGAGCAGTTGACG+TGG | - | chr5_3:58175918-58175937 | None:intergenic | 50.0% | |
| !! | TGGTGTTGTTAGCGATGCCT+TGG | + | chr5_3:58176091-58176110 | Msa0820650:intron | 50.0% |
| !! | GGTGTTGTTAGCGATGCCTT+GGG | + | chr5_3:58176092-58176111 | Msa0820650:intron | 50.0% |
| ACATGACTATTGGGGGCTAG+TGG | - | chr5_3:58176152-58176171 | None:intergenic | 50.0% | |
| GAGGATGTTATGGAAGAGGG+AGG | + | chr5_3:58176363-58176382 | Msa0820650:CDS | 50.0% | |
| GGAAGAGGGAGGGAATATTG+TGG | + | chr5_3:58176374-58176393 | Msa0820650:CDS | 50.0% | |
| GTGATTTCTTTCCCGAGCGA+TGG | + | chr5_3:58176409-58176428 | Msa0820650:CDS | 50.0% | |
| CGAGCGATGGTTTGATTGTG+TGG | + | chr5_3:58176422-58176441 | Msa0820650:CDS | 50.0% | |
| TGTATGACCGTCTGAGCAGA+AGG | + | chr5_3:58176472-58176491 | Msa0820650:CDS | 50.0% | |
| GGCTAAAGAAAGTTACGCGG+AGG | + | chr5_3:58176656-58176675 | Msa0820650:CDS | 50.0% | |
| GAATTGGCCCATCCCAGTAT+AGG | + | chr5_3:58176755-58176774 | Msa0820650:CDS | 50.0% | |
| ! | TCCACATGCGCCATGTTTTC+CGG | + | chr5_3:58176935-58176954 | Msa0820650:three_prime_UTR | 50.0% |
| ! | AATGTGCTGGCCGGAAAACA+TGG | - | chr5_3:58176948-58176967 | None:intergenic | 50.0% |
| GGCGGAAGCTTGAAATACGG+CGG | - | chr5_3:58174358-58174377 | None:intergenic | 55.0% | |
| !! | GTACAGAAGCACCGAGGCAA+TGG | - | chr5_3:58174763-58174782 | None:intergenic | 55.0% |
| TCTGCCACGGCAATTTGCCA+TGG | + | chr5_3:58174815-58174834 | Msa0820650:intron | 55.0% | |
| GTGACCATGGCAAATTGCCG+TGG | - | chr5_3:58174822-58174841 | None:intergenic | 55.0% | |
| ACTAAGTGCGGTCGGCTACA+TGG | - | chr5_3:58175609-58175628 | None:intergenic | 55.0% | |
| CGACCGCACTTAGTGTGATG+AGG | + | chr5_3:58175615-58175634 | Msa0820650:intron | 55.0% | |
| GTGGTTGTCTTTCCTGTCCC+TGG | - | chr5_3:58175899-58175918 | None:intergenic | 55.0% | |
| GTGACTGGTACACCAGGGAC+AGG | + | chr5_3:58175884-58175903 | Msa0820650:CDS | 60.0% | |
| GCCGGAAAACATGGCGCATG+TGG | - | chr5_3:58176939-58176958 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 58174247 | 58177025 | 58174247 | ID=Msa0820650;Name=Msa0820650 |
| chr5_3 | mRNA | 58174247 | 58177025 | 58174247 | ID=Msa0820650-mRNA-1;Parent=Msa0820650;Name=Msa0820650-mRNA-1;_AED=0.06;_eAED=0.06;_QI=204|1|1|1|0.66|0.5|4|249|177 |
| chr5_3 | exon | 58174247 | 58174400 | 58174247 | ID=Msa0820650-mRNA-1:exon:17593;Parent=Msa0820650-mRNA-1 |
| chr5_3 | exon | 58175792 | 58176042 | 58175792 | ID=Msa0820650-mRNA-1:exon:17594;Parent=Msa0820650-mRNA-1 |
| chr5_3 | exon | 58176348 | 58176493 | 58176348 | ID=Msa0820650-mRNA-1:exon:17595;Parent=Msa0820650-mRNA-1 |
| chr5_3 | exon | 58176590 | 58177025 | 58176590 | ID=Msa0820650-mRNA-1:exon:17596;Parent=Msa0820650-mRNA-1 |
| chr5_3 | five_prime_UTR | 58174247 | 58174400 | 58174247 | ID=Msa0820650-mRNA-1:five_prime_utr;Parent=Msa0820650-mRNA-1 |
| chr5_3 | five_prime_UTR | 58175792 | 58175841 | 58175792 | ID=Msa0820650-mRNA-1:five_prime_utr;Parent=Msa0820650-mRNA-1 |
| chr5_3 | CDS | 58175842 | 58176042 | 58175842 | ID=Msa0820650-mRNA-1:cds;Parent=Msa0820650-mRNA-1 |
| chr5_3 | CDS | 58176348 | 58176493 | 58176348 | ID=Msa0820650-mRNA-1:cds;Parent=Msa0820650-mRNA-1 |
| chr5_3 | CDS | 58176590 | 58176776 | 58176590 | ID=Msa0820650-mRNA-1:cds;Parent=Msa0820650-mRNA-1 |
| chr5_3 | three_prime_UTR | 58176777 | 58177025 | 58176777 | ID=Msa0820650-mRNA-1:three_prime_utr;Parent=Msa0820650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
