Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390100 | KEH36673.1 | 90.909 | 44 | 4 | 0 | 63 | 106 | 6 | 49 | 1.13e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390100 | A0A072V5P3 | 90.909 | 44 | 4 | 0 | 63 | 106 | 6 | 49 | 5.40e-19 | 87.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055100 | Msa1390100 | 0.805180 | 1.511671e-49 | -8.615850e-47 |
| Msa0101180 | Msa1390100 | 0.805372 | 1.378094e-49 | -8.615850e-47 |
| Msa0108870 | Msa1390100 | 0.820438 | 6.858845e-53 | -8.615850e-47 |
| Msa1372310 | Msa1390100 | 0.813585 | 2.375392e-51 | -8.615850e-47 |
| Msa0609000 | Msa1390100 | 0.800436 | 1.442305e-48 | -8.615850e-47 |
| Msa0626680 | Msa1390100 | 0.831122 | 1.996813e-55 | -8.615850e-47 |
| Msa0659990 | Msa1390100 | 0.808001 | 3.838609e-50 | -8.615850e-47 |
| Msa0664760 | Msa1390100 | 0.813679 | 2.265929e-51 | -8.615850e-47 |
| Msa0679100 | Msa1390100 | 0.803015 | 4.265443e-49 | -8.615850e-47 |
| Msa0706390 | Msa1390100 | 0.813064 | 3.091619e-51 | -8.615850e-47 |
| Msa0756930 | Msa1390100 | 0.802729 | 4.885578e-49 | -8.615850e-47 |
| Msa0781270 | Msa1390100 | 0.809293 | 2.032536e-50 | -8.615850e-47 |
| Msa0795660 | Msa1390100 | 0.805069 | 1.594474e-49 | -8.615850e-47 |
| Msa0814250 | Msa1390100 | 0.816016 | 6.870031e-52 | -8.615850e-47 |
| Msa0817260 | Msa1390100 | 0.818577 | 1.823115e-52 | -8.615850e-47 |
| Msa0822170 | Msa1390100 | 0.802186 | 6.321643e-49 | -8.615850e-47 |
| Msa0825280 | Msa1390100 | 0.800315 | 1.527100e-48 | -8.615850e-47 |
| Msa0171850 | Msa1390100 | 0.804725 | 1.881773e-49 | -8.615850e-47 |
| Msa0174000 | Msa1390100 | 0.803862 | 2.846723e-49 | -8.615850e-47 |
| Msa0177230 | Msa1390100 | 0.803456 | 3.456858e-49 | -8.615850e-47 |
| Msa0186770 | Msa1390100 | 0.826932 | 2.068281e-54 | -8.615850e-47 |
| Msa0198520 | Msa1390100 | 0.822223 | 2.657669e-53 | -8.615850e-47 |
| Msa0198530 | Msa1390100 | 0.816190 | 6.282084e-52 | -8.615850e-47 |
| Msa0221600 | Msa1390100 | 0.815957 | 7.083278e-52 | -8.615850e-47 |
| Msa1296300 | Msa1390100 | 0.830786 | 2.413215e-55 | -8.615850e-47 |
| Msa1329450 | Msa1390100 | 0.800818 | 1.205625e-48 | -8.615850e-47 |
| Msa0439890 | Msa1390100 | 0.806519 | 7.908311e-50 | -8.615850e-47 |
| Msa0474700 | Msa1390100 | 0.800338 | 1.510490e-48 | -8.615850e-47 |
| Msa0980940 | Msa1390100 | 0.801538 | 8.588634e-49 | -8.615850e-47 |
| Msa1001350 | Msa1390100 | 0.803204 | 3.897809e-49 | -8.615850e-47 |
| Msa1025940 | Msa1390100 | 0.800654 | 1.302496e-48 | -8.615850e-47 |
| Msa1083880 | Msa1390100 | 0.809055 | 2.286504e-50 | -8.615850e-47 |
| Msa1093330 | Msa1390100 | 0.801421 | 9.075220e-49 | -8.615850e-47 |
| Msa0239940 | Msa1390100 | 0.810629 | 1.048165e-50 | -8.615850e-47 |
| Msa0288730 | Msa1390100 | 0.808067 | 3.716240e-50 | -8.615850e-47 |
| Msa0289400 | Msa1390100 | 0.803976 | 2.695517e-49 | -8.615850e-47 |
| Msa0308220 | Msa1390100 | 0.809797 | 1.584316e-50 | -8.615850e-47 |
| Msa0321170 | Msa1390100 | 0.805009 | 1.641864e-49 | -8.615850e-47 |
| Msa0322590 | Msa1390100 | 0.805117 | 1.558654e-49 | -8.615850e-47 |
| Msa1215080 | Msa1390100 | 0.884105 | 2.546478e-71 | -8.615850e-47 |
| Msa0534080 | Msa1390100 | 0.808202 | 3.477113e-50 | -8.615850e-47 |
| Msa0578090 | Msa1390100 | 0.825113 | 5.594083e-54 | -8.615850e-47 |
| Msa0586850 | Msa1390100 | 0.827502 | 1.510084e-54 | -8.615850e-47 |
| Msa0899350 | Msa1390100 | 0.804264 | 2.347767e-49 | -8.615850e-47 |
| Msa0901450 | Msa1390100 | 0.802869 | 4.571505e-49 | -8.615850e-47 |
| Msa0963020 | Msa1390100 | 0.804882 | 1.745383e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACACTGAGAAGCGAAAA+TGG | 0.300690 | tig0021331:+56615 | Msa1390100:CDS |
| AAGAAGAAGCAAGGTGTAGA+TGG | 0.344753 | tig0021331:-56684 | None:intergenic |
| CATACGAGCTCATCCCTTCA+AGG | 0.437361 | tig0021331:-57917 | None:intergenic |
| AACGAGGTTCCTAACCTTGA+AGG | 0.452298 | tig0021331:+57903 | Msa1390100:CDS |
| GAGCTCATCCCTTCAAGGTT+AGG | 0.453636 | tig0021331:-57912 | None:intergenic |
| ATAGGAATCATCTTAGAGAT+AGG | 0.479459 | tig0021331:+57991 | Msa1390100:CDS |
| ATCATCTTAGAGATAGGATG+TGG | 0.498557 | tig0021331:+57997 | Msa1390100:CDS |
| TTAACAAGGTTATCTGATGA+AGG | 0.516699 | tig0021331:+57948 | Msa1390100:CDS |
| TGATGAAGGTGCAGCTGAGA+TGG | 0.559464 | tig0021331:+57962 | Msa1390100:CDS |
| CAGCTGAGATGGCAATGGAT+AGG | 0.572746 | tig0021331:+57973 | Msa1390100:CDS |
| CGTATGTTGAAAACTTAACA+AGG | 0.583345 | tig0021331:+57934 | Msa1390100:CDS |
| AGCGAAAATGGCGATTTCGA+CGG | 0.590473 | tig0021331:+56627 | Msa1390100:CDS |
| ACGAGGTTCCTAACCTTGAA+GGG | 0.611095 | tig0021331:+57904 | Msa1390100:CDS |
| AAAACTTGAGGCGGTGAACG+AGG | 0.615754 | tig0021331:+57887 | Msa1390100:intron |
| ACCGTGCTTCTTCTTCTCTG+CGG | 0.616187 | tig0021331:+56727 | Msa1390100:CDS |
| ACCGCAGAGAAGAAGAAGCA+CGG | 0.624330 | tig0021331:-56728 | None:intergenic |
| AGGTGCAGCTGAGATGGCAA+TGG | 0.647281 | tig0021331:+57968 | Msa1390100:CDS |
| TCATCTTAGAGATAGGATGT+GGG | 0.679475 | tig0021331:+57998 | Msa1390100:CDS |
| GCGGTGGAGAAGAAGAAGCA+AGG | 0.680210 | tig0021331:-56693 | None:intergenic |
| ACGGTAGAGAAGAAACGCGG+TGG | 0.741441 | tig0021331:-56709 | None:intergenic |
| AGCACGGTAGAGAAGAAACG+CGG | 0.793637 | tig0021331:-56712 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTTTTTTTTATCTAAAC+AGG | - | tig0021331:57064-57083 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | - | tig0021331:57400-57419 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | tig0021331:57503-57522 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | tig0021331:57527-57546 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | tig0021331:57526-57545 | Msa1390100:intron | 15.0% |
| !!! | TAAGTTTTTTTTATCTAAAC+AGG | - | tig0021331:57064-57083 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | - | tig0021331:57400-57419 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | tig0021331:57503-57522 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | tig0021331:57527-57546 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | tig0021331:57526-57545 | Msa1390100:intron | 15.0% |
| !! | AGTAAAAAAATCGCTATATT+AGG | - | tig0021331:56830-56849 | None:intergenic | 20.0% |
| !! | AAAAACACAAAATCATAGAA+CGG | - | tig0021331:56882-56901 | None:intergenic | 20.0% |
| !!! | TCTATGTAAATTTAAGATTG+CGG | + | tig0021331:56906-56925 | Msa1390100:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | tig0021331:57440-57459 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | tig0021331:57517-57536 | Msa1390100:intron | 20.0% |
| !! | AATGATTAAGAGAAAGAAAA+TGG | - | tig0021331:57560-57579 | None:intergenic | 20.0% |
| !! | TATACAAATACTAGATAAGT+AGG | - | tig0021331:57693-57712 | None:intergenic | 20.0% |
| !! | TACTTATCTAGTATTTGTAT+AGG | + | tig0021331:57692-57711 | Msa1390100:intron | 20.0% |
| !! | AGTAAAAAAATCGCTATATT+AGG | - | tig0021331:56830-56849 | None:intergenic | 20.0% |
| !! | AAAAACACAAAATCATAGAA+CGG | - | tig0021331:56882-56901 | None:intergenic | 20.0% |
| !!! | TCTATGTAAATTTAAGATTG+CGG | + | tig0021331:56906-56925 | Msa1390100:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | tig0021331:57440-57459 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | tig0021331:57517-57536 | Msa1390100:intron | 20.0% |
| !! | AATGATTAAGAGAAAGAAAA+TGG | - | tig0021331:57560-57579 | None:intergenic | 20.0% |
| !! | TATACAAATACTAGATAAGT+AGG | - | tig0021331:57693-57712 | None:intergenic | 20.0% |
| !! | TACTTATCTAGTATTTGTAT+AGG | + | tig0021331:57692-57711 | Msa1390100:intron | 20.0% |
| ! | TGTATCTTTCAATATTCACA+CGG | + | tig0021331:57321-57340 | Msa1390100:intron | 25.0% |
| ! | TAGAGAAGTAAACAATCATA+AGG | - | tig0021331:57720-57739 | None:intergenic | 25.0% |
| !! | TTATTGTTACTTAGTATGAC+AGG | + | tig0021331:57843-57862 | Msa1390100:intron | 25.0% |
| ! | TAACTGATATTGAAAACTTG+AGG | + | tig0021331:57875-57894 | Msa1390100:intron | 25.0% |
| ! | TGTATCTTTCAATATTCACA+CGG | + | tig0021331:57321-57340 | Msa1390100:intron | 25.0% |
| ! | TAGAGAAGTAAACAATCATA+AGG | - | tig0021331:57720-57739 | None:intergenic | 25.0% |
| !! | TTATTGTTACTTAGTATGAC+AGG | + | tig0021331:57843-57862 | Msa1390100:intron | 25.0% |
| ! | TAACTGATATTGAAAACTTG+AGG | + | tig0021331:57875-57894 | Msa1390100:intron | 25.0% |
| !! | TTAGTTTTTCTGCAGAATGA+GGG | - | tig0021331:56591-56610 | None:intergenic | 30.0% |
| TGTAGATGGAAGAAAAATCA+CGG | - | tig0021331:56673-56692 | None:intergenic | 30.0% | |
| GATTGATATTTGCAGCTTAT+AGG | + | tig0021331:57025-57044 | Msa1390100:intron | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | tig0021331:57411-57430 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | tig0021331:57609-57628 | Msa1390100:intron | 30.0% |
| CTCGATAAGAGGAAAATAAA+AGG | - | tig0021331:57806-57825 | None:intergenic | 30.0% | |
| CGTATGTTGAAAACTTAACA+AGG | + | tig0021331:57934-57953 | Msa1390100:CDS | 30.0% | |
| TTAACAAGGTTATCTGATGA+AGG | + | tig0021331:57948-57967 | Msa1390100:CDS | 30.0% | |
| ATAGGAATCATCTTAGAGAT+AGG | + | tig0021331:57991-58010 | Msa1390100:CDS | 30.0% | |
| !! | TTAGTTTTTCTGCAGAATGA+GGG | - | tig0021331:56591-56610 | None:intergenic | 30.0% |
| TGTAGATGGAAGAAAAATCA+CGG | - | tig0021331:56673-56692 | None:intergenic | 30.0% | |
| GATTGATATTTGCAGCTTAT+AGG | + | tig0021331:57025-57044 | Msa1390100:intron | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | tig0021331:57411-57430 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | tig0021331:57609-57628 | Msa1390100:intron | 30.0% |
| CTCGATAAGAGGAAAATAAA+AGG | - | tig0021331:57806-57825 | None:intergenic | 30.0% | |
| CGTATGTTGAAAACTTAACA+AGG | + | tig0021331:57934-57953 | Msa1390100:CDS | 30.0% | |
| TTAACAAGGTTATCTGATGA+AGG | + | tig0021331:57948-57967 | Msa1390100:CDS | 30.0% | |
| ATAGGAATCATCTTAGAGAT+AGG | + | tig0021331:57991-58010 | Msa1390100:CDS | 30.0% | |
| !!! | GTTAGTTTTTCTGCAGAATG+AGG | - | tig0021331:56592-56611 | None:intergenic | 35.0% |
| ATATTTGCAGCTTATAGGTC+TGG | + | tig0021331:57030-57049 | Msa1390100:intron | 35.0% | |
| TTCAATATTCACACGGATAC+CGG | + | tig0021331:57328-57347 | Msa1390100:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | tig0021331:57374-57393 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | tig0021331:57474-57493 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | tig0021331:57478-57497 | None:intergenic | 35.0% |
| AAAACACGATACTCGATAAG+AGG | - | tig0021331:57817-57836 | None:intergenic | 35.0% | |
| CTGATATTGAAAACTTGAGG+CGG | + | tig0021331:57878-57897 | Msa1390100:intron | 35.0% | |
| ATCATCTTAGAGATAGGATG+TGG | + | tig0021331:57997-58016 | Msa1390100:CDS | 35.0% | |
| TCATCTTAGAGATAGGATGT+GGG | + | tig0021331:57998-58017 | Msa1390100:CDS | 35.0% | |
| !!! | GTTAGTTTTTCTGCAGAATG+AGG | - | tig0021331:56592-56611 | None:intergenic | 35.0% |
| ATATTTGCAGCTTATAGGTC+TGG | + | tig0021331:57030-57049 | Msa1390100:intron | 35.0% | |
| TTCAATATTCACACGGATAC+CGG | + | tig0021331:57328-57347 | Msa1390100:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | tig0021331:57374-57393 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | tig0021331:57474-57493 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | tig0021331:57478-57497 | None:intergenic | 35.0% |
| AAAACACGATACTCGATAAG+AGG | - | tig0021331:57817-57836 | None:intergenic | 35.0% | |
| CTGATATTGAAAACTTGAGG+CGG | + | tig0021331:57878-57897 | Msa1390100:intron | 35.0% | |
| ATCATCTTAGAGATAGGATG+TGG | + | tig0021331:57997-58016 | Msa1390100:CDS | 35.0% | |
| TCATCTTAGAGATAGGATGT+GGG | + | tig0021331:57998-58017 | Msa1390100:CDS | 35.0% | |
| AGAACACTGAGAAGCGAAAA+TGG | + | tig0021331:56615-56634 | Msa1390100:CDS | 40.0% | |
| AGATGGAAGAAAAATCACGG+CGG | - | tig0021331:56670-56689 | None:intergenic | 40.0% | |
| AAGAAGAAGCAAGGTGTAGA+TGG | - | tig0021331:56687-56706 | None:intergenic | 40.0% | |
| !!! | TTCTTCTCTGCGGTTTTTTC+AGG | + | tig0021331:56737-56756 | Msa1390100:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | tig0021331:57613-57632 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | tig0021331:57475-57494 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | tig0021331:57613-57632 | Msa1390100:intron | 40.0% |
| !! | AACGGAGGGAGTATTTGTTT+AGG | + | tig0021331:57627-57646 | Msa1390100:intron | 40.0% |
| AGAACACTGAGAAGCGAAAA+TGG | + | tig0021331:56615-56634 | Msa1390100:CDS | 40.0% | |
| AGATGGAAGAAAAATCACGG+CGG | - | tig0021331:56670-56689 | None:intergenic | 40.0% | |
| AAGAAGAAGCAAGGTGTAGA+TGG | - | tig0021331:56687-56706 | None:intergenic | 40.0% | |
| !!! | TTCTTCTCTGCGGTTTTTTC+AGG | + | tig0021331:56737-56756 | Msa1390100:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | tig0021331:57613-57632 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | tig0021331:57475-57494 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | tig0021331:57613-57632 | Msa1390100:intron | 40.0% |
| !! | AACGGAGGGAGTATTTGTTT+AGG | + | tig0021331:57627-57646 | Msa1390100:intron | 40.0% |
| AGCGAAAATGGCGATTTCGA+CGG | + | tig0021331:56627-56646 | Msa1390100:CDS | 45.0% | |
| AGAAAAATCACGGCGGAGAT+CGG | - | tig0021331:56663-56682 | None:intergenic | 45.0% | |
| !! | GGGAGTACAGGTTTTGTATC+CGG | - | tig0021331:57350-57369 | None:intergenic | 45.0% |
| !!! | TTTTGAAACGGAGGGAGTAC+AGG | - | tig0021331:57362-57381 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | tig0021331:57612-57631 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | tig0021331:57612-57631 | Msa1390100:intron | 45.0% |
| AACGAGGTTCCTAACCTTGA+AGG | + | tig0021331:57903-57922 | Msa1390100:CDS | 45.0% | |
| ACGAGGTTCCTAACCTTGAA+GGG | + | tig0021331:57904-57923 | Msa1390100:CDS | 45.0% | |
| AGCGAAAATGGCGATTTCGA+CGG | + | tig0021331:56627-56646 | Msa1390100:CDS | 45.0% | |
| AGAAAAATCACGGCGGAGAT+CGG | - | tig0021331:56663-56682 | None:intergenic | 45.0% | |
| !! | GGGAGTACAGGTTTTGTATC+CGG | - | tig0021331:57350-57369 | None:intergenic | 45.0% |
| !!! | TTTTGAAACGGAGGGAGTAC+AGG | - | tig0021331:57362-57381 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | tig0021331:57612-57631 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | tig0021331:57612-57631 | Msa1390100:intron | 45.0% |
| AACGAGGTTCCTAACCTTGA+AGG | + | tig0021331:57903-57922 | Msa1390100:CDS | 45.0% | |
| ACGAGGTTCCTAACCTTGAA+GGG | + | tig0021331:57904-57923 | Msa1390100:CDS | 45.0% | |
| AGCACGGTAGAGAAGAAACG+CGG | - | tig0021331:56715-56734 | None:intergenic | 50.0% | |
| ACCGTGCTTCTTCTTCTCTG+CGG | + | tig0021331:56727-56746 | Msa1390100:CDS | 50.0% | |
| ACCGCAGAGAAGAAGAAGCA+CGG | - | tig0021331:56731-56750 | None:intergenic | 50.0% | |
| AAAACTTGAGGCGGTGAACG+AGG | + | tig0021331:57887-57906 | Msa1390100:intron | 50.0% | |
| GAGCTCATCCCTTCAAGGTT+AGG | - | tig0021331:57915-57934 | None:intergenic | 50.0% | |
| CATACGAGCTCATCCCTTCA+AGG | - | tig0021331:57920-57939 | None:intergenic | 50.0% | |
| ! | TGATGAAGGTGCAGCTGAGA+TGG | + | tig0021331:57962-57981 | Msa1390100:CDS | 50.0% |
| CAGCTGAGATGGCAATGGAT+AGG | + | tig0021331:57973-57992 | Msa1390100:CDS | 50.0% | |
| AGCACGGTAGAGAAGAAACG+CGG | - | tig0021331:56715-56734 | None:intergenic | 50.0% | |
| ACCGTGCTTCTTCTTCTCTG+CGG | + | tig0021331:56727-56746 | Msa1390100:CDS | 50.0% | |
| ACCGCAGAGAAGAAGAAGCA+CGG | - | tig0021331:56731-56750 | None:intergenic | 50.0% | |
| AAAACTTGAGGCGGTGAACG+AGG | + | tig0021331:57887-57906 | Msa1390100:intron | 50.0% | |
| GAGCTCATCCCTTCAAGGTT+AGG | - | tig0021331:57915-57934 | None:intergenic | 50.0% | |
| CATACGAGCTCATCCCTTCA+AGG | - | tig0021331:57920-57939 | None:intergenic | 50.0% | |
| ! | TGATGAAGGTGCAGCTGAGA+TGG | + | tig0021331:57962-57981 | Msa1390100:CDS | 50.0% |
| CAGCTGAGATGGCAATGGAT+AGG | + | tig0021331:57973-57992 | Msa1390100:CDS | 50.0% | |
| GCGGTGGAGAAGAAGAAGCA+AGG | - | tig0021331:56696-56715 | None:intergenic | 55.0% | |
| ACGGTAGAGAAGAAACGCGG+TGG | - | tig0021331:56712-56731 | None:intergenic | 55.0% | |
| AGGTGCAGCTGAGATGGCAA+TGG | + | tig0021331:57968-57987 | Msa1390100:CDS | 55.0% | |
| GCGGTGGAGAAGAAGAAGCA+AGG | - | tig0021331:56696-56715 | None:intergenic | 55.0% | |
| ACGGTAGAGAAGAAACGCGG+TGG | - | tig0021331:56712-56731 | None:intergenic | 55.0% | |
| AGGTGCAGCTGAGATGGCAA+TGG | + | tig0021331:57968-57987 | Msa1390100:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021331 | gene | 56567 | 58037 | 56567 | ID=Msa1390100;Name=Msa1390100 |
| tig0021331 | mRNA | 56567 | 58037 | 56567 | ID=Msa1390100-mRNA-1;Parent=Msa1390100;Name=Msa1390100-mRNA-1;_AED=0.16;_eAED=0.52;_QI=0|0|0|1|1|1|2|0|110 |
| tig0021331 | exon | 56567 | 56758 | 56567 | ID=Msa1390100-mRNA-1:exon:11994;Parent=Msa1390100-mRNA-1 |
| tig0021331 | exon | 57897 | 58037 | 57897 | ID=Msa1390100-mRNA-1:exon:11995;Parent=Msa1390100-mRNA-1 |
| tig0021331 | CDS | 56567 | 56758 | 56567 | ID=Msa1390100-mRNA-1:cds;Parent=Msa1390100-mRNA-1 |
| tig0021331 | CDS | 57897 | 58037 | 57897 | ID=Msa1390100-mRNA-1:cds;Parent=Msa1390100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
