AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0679100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679100 MtrunA17_Chr4g0024631 97.647 340 3 1 34 368 68 407 0.0 686
Msa0679100 MtrunA17_Chr2g0322591 80.236 339 59 2 34 368 68 402 0.0 566
Msa0679100 MtrunA17_Chr3g0115251 61.702 376 133 3 1 368 22 394 6.11e-172 484
Msa0679100 MtrunA17_Chr4g0004991 71.479 284 76 1 90 368 11 294 1.44e-159 449
Msa0679100 MtrunA17_Chr4g0017871 64.609 243 81 1 128 365 4 246 1.79e-124 358
Msa0679100 MtrunA17_Chr5g0396961 46.863 271 134 4 64 333 80 341 9.04e-82 253
Msa0679100 MtrunA17_Chr3g0126221 47.970 271 131 5 64 333 80 341 1.12e-79 248
Msa0679100 MtrunA17_Chr1g0149521 44.015 259 134 5 62 319 85 333 2.81e-67 216
Msa0679100 MtrunA17_Chr8g0360581 32.934 334 186 10 49 355 6 328 8.93e-51 173
Msa0679100 MtrunA17_Chr2g0316241 35.798 257 153 6 101 354 74 321 5.31e-50 171
Msa0679100 MtrunA17_Chr4g0017861 40.698 86 45 2 47 131 71 151 1.13e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679100 AT1G05170.2 79.412 340 65 1 34 368 68 407 0.0 576
Msa0679100 AT2G32430.1 78.006 341 70 1 33 368 69 409 0.0 548
Msa0679100 AT4G26940.1 77.410 332 71 1 41 368 76 407 0.0 535
Msa0679100 AT1G05170.1 78.322 286 62 0 34 319 68 353 2.52e-171 482
Msa0679100 AT1G32930.1 60.753 372 138 3 2 368 31 399 3.50e-168 475
Msa0679100 AT1G11730.1 67.925 318 91 2 55 367 72 383 1.59e-165 468
Msa0679100 AT1G77810.2 58.808 369 130 4 6 366 28 382 9.99e-159 451
Msa0679100 AT1G77810.1 58.333 372 130 5 6 366 28 385 1.69e-156 445
Msa0679100 AT1G33430.1 61.272 346 118 5 29 368 58 393 3.85e-150 429
Msa0679100 AT1G33430.2 59.887 354 118 6 29 368 58 401 8.48e-147 421
Msa0679100 AT1G22015.1 57.593 349 136 3 28 368 51 395 4.57e-145 417
Msa0679100 AT1G33430.3 61.686 261 89 4 29 288 58 308 3.56e-105 312
Msa0679100 AT4G26940.2 73.301 206 55 0 41 246 76 281 2.19e-102 305
Msa0679100 AT5G53340.1 46.097 269 135 5 64 331 76 335 2.09e-79 247
Msa0679100 AT5G53340.2 46.008 263 134 4 64 325 76 331 2.65e-78 244
Msa0679100 AT4G32120.1 45.946 259 128 6 62 319 85 332 2.72e-69 221
Msa0679100 AT2G25300.2 43.629 259 134 5 62 319 8 255 7.27e-68 215
Msa0679100 AT2G25300.1 44.094 254 128 5 67 319 93 333 8.22e-67 215
Msa0679100 AT2G26100.1 37.066 259 147 7 101 354 107 354 1.51e-51 176
Msa0679100 AT1G53290.1 34.884 258 156 6 101 355 83 331 1.38e-48 167
Msa0679100 AT3G14960.1 33.984 256 157 6 101 353 81 327 2.09e-48 167
Msa0679100 AT2G26100.2 37.662 231 135 5 101 327 107 332 1.79e-46 162

Find 108 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAGGCTTGGTTTCTTTC+TGG 0.071661 4_4:+36563282 None:intergenic
CCTAATAAATTGATATAATT+TGG 0.146827 4_4:-36562999 Msa0679100:three_prime_UTR
CCAAATTATATCAATTTATT+AGG 0.169156 4_4:+36562999 None:intergenic
TCAATAGGAGCTTGGTTTAT+TGG 0.210268 4_4:-36563923 Msa0679100:CDS
TTGCCACTGCTGTGAGCTTA+TGG 0.241789 4_4:-36564636 Msa0679100:CDS
ACACATAAATAATCAATTAT+TGG 0.257213 4_4:+36562952 None:intergenic
CATTGGAAGTTTGGCGAGTC+TGG 0.279395 4_4:-36564149 Msa0679100:CDS
TTTATGGAGTGCTTCTTTCT+AGG 0.298948 4_4:-36563354 Msa0679100:exon
GAGAAGGTGAAAATGCTTTA+TGG 0.301896 4_4:-36563370 Msa0679100:CDS
GTTAATATCATAACAGGATA+TGG 0.306458 4_4:-36566073 Msa0679100:CDS
GAACCTGAGCATTGGAAGTT+TGG 0.307392 4_4:-36564158 Msa0679100:CDS
TCCAATTTAGTTACAAGATC+TGG 0.320538 4_4:-36565762 Msa0679100:intron
GGAACTATTAACAAACAAAA+TGG 0.326167 4_4:+36563041 None:intergenic
TGGAGTATTCCTGAACAAAA+TGG 0.340829 4_4:-36566053 Msa0679100:CDS
ATTGTCATGCGCTTTGTAAT+TGG 0.344864 4_4:-36565220 Msa0679100:CDS
CTCCTGTTTCAGAAGATATA+AGG 0.357539 4_4:-36565500 Msa0679100:CDS
TTGTCTTTGCTGACAATTCA+AGG 0.362315 4_4:+36564668 None:intergenic
TTTGTGTTGCTTCATTTGAT+TGG 0.363073 4_4:-36563451 Msa0679100:CDS
GAAAAGAAGGGACTCGGTTC+GGG 0.366676 4_4:-36565409 Msa0679100:CDS
TGCCACTGCTGTGAGCTTAT+GGG 0.367282 4_4:-36564635 Msa0679100:CDS
GGTAATAATCTTCCTGAGTT+AGG 0.368466 4_4:+36563308 None:intergenic
AGAAATGTTAATATCATAAC+AGG 0.370926 4_4:-36566079 Msa0679100:CDS
ATATTTCTCTCTATATATAC+TGG 0.384402 4_4:+36563225 None:intergenic
TACATTGGATGCATGAAATC+TGG 0.384729 4_4:-36564294 Msa0679100:CDS
GTCCTTATATCTTCTGAAAC+AGG 0.385267 4_4:+36565498 None:intergenic
GGAAAAGAAGGGACTCGGTT+CGG 0.389458 4_4:-36565410 Msa0679100:CDS
ACTTCCAATGCTCAGGTTCA+TGG 0.389694 4_4:+36564162 None:intergenic
AGACCGACAGCTTCAGAAAC+TGG 0.394152 4_4:-36566023 Msa0679100:intron
TCTATTCTTTGTTGCTTGAA+AGG 0.423223 4_4:-36563065 Msa0679100:three_prime_UTR
CTGCTTCAATAGCTCTATCT+AGG 0.425000 4_4:+36564895 None:intergenic
CTATTCTTTGTTGCTTGAAA+GGG 0.429201 4_4:-36563064 Msa0679100:three_prime_UTR
GTACATAGAAGGTGTGGAGA+AGG 0.442264 4_4:-36563386 Msa0679100:CDS
GGAGCTGCAGTGGAATTTGT+AGG 0.445573 4_4:-36563430 Msa0679100:CDS
ATCTCTTCTTAAAATGTAGA+AGG 0.449785 4_4:+36563140 None:intergenic
TTAATACTGCCTTTAGCAGC+AGG 0.450178 4_4:-36565431 Msa0679100:CDS
GATGATGTTCATGTAAATAT+AGG 0.452270 4_4:-36564586 Msa0679100:intron
TTTATGCAGAATCATGTTGA+AGG 0.456059 4_4:-36564694 Msa0679100:intron
TCCTATTGACACATCCTCAT+TGG 0.456204 4_4:+36563937 None:intergenic
TATGTATGGTGAGGATTTCA+AGG 0.463369 4_4:-36565717 Msa0679100:CDS
AATAATCAATTATTGGCAAA+AGG 0.465631 4_4:+36562959 None:intergenic
GGATTAAAGAAGTACATAGA+AGG 0.469286 4_4:-36563397 Msa0679100:CDS
GAATTTGTAGGTCCGCTGAT+AGG 0.469957 4_4:-36563418 Msa0679100:CDS
CCTTTAGCAGCAGGAAAAGA+AGG 0.471407 4_4:-36565422 Msa0679100:CDS
AAGTACTTCCGCCATGCCAC+AGG 0.472843 4_4:-36564122 Msa0679100:CDS
GGGCAAGAGAAAGTACCTTA+TGG 0.476193 4_4:-36565463 Msa0679100:CDS
TATTAATATCTCCGTAGCAT+TGG 0.480971 4_4:-36562836 Msa0679100:three_prime_UTR
CTGTATTGAATGTAGAGCTT+TGG 0.481497 4_4:-36565595 Msa0679100:intron
TCATGGTTTGCAGCTAGATA+AGG 0.483793 4_4:-36563114 Msa0679100:three_prime_UTR
ATAATTGATTATTTATGTGT+TGG 0.487550 4_4:-36562949 Msa0679100:three_prime_UTR
GCATGGAGATTTCTTGAGGC+TGG 0.488147 4_4:-36564862 Msa0679100:intron
TTGTTTGTTAATAGTTCCAA+TGG 0.493333 4_4:-36563036 Msa0679100:three_prime_UTR
CTTAAAATGTAGAAGGTCCA+TGG 0.495200 4_4:+36563147 None:intergenic
TCGCCAAACTTCCAATGCTC+AGG 0.496491 4_4:+36564155 None:intergenic
GCCAATGAGGATGTGTCAAT+AGG 0.497688 4_4:-36563938 Msa0679100:CDS
TTCAAATTTAGAGATGGACT+TGG 0.502922 4_4:-36565562 Msa0679100:CDS
AATAAATTGATATAATTTGG+TGG 0.503156 4_4:-36562996 Msa0679100:three_prime_UTR
GGAGCTTGATAGCTAGCCAT+TGG 0.506135 4_4:+36563020 None:intergenic
GAGTGCCACAGCAAAGTCTT+CGG 0.512041 4_4:+36563876 None:intergenic
GGCTTGGTTTCTTTCTGGAG+TGG 0.512180 4_4:+36563287 None:intergenic
GGGACTCGGTTCGGGCTACC+TGG 0.512421 4_4:-36565401 Msa0679100:CDS
TATTAATACCTACGACCATA+AGG 0.514517 4_4:+36565448 None:intergenic
GATGGACTTGGCTGCTGCGA+GGG 0.515443 4_4:-36565550 Msa0679100:CDS
TGTATCTTAGTAATTCCCCT+AGG 0.517860 4_4:-36562893 Msa0679100:three_prime_UTR
GACTATTTCAAATTTAGAGA+TGG 0.518519 4_4:-36565568 Msa0679100:CDS
TGCGAATGGAAGGCGCAAGC+AGG 0.529852 4_4:-36563479 Msa0679100:CDS
GTATCTTAGTAATTCCCCTA+GGG 0.535039 4_4:-36562892 Msa0679100:three_prime_UTR
TCAATTATTGGCAAAAGGAA+AGG 0.536443 4_4:+36562964 None:intergenic
TCAAAACAACGGATATACAT+TGG 0.538752 4_4:-36564309 Msa0679100:CDS
CAGCAGGAAAAGAAGGGACT+CGG 0.538952 4_4:-36565415 Msa0679100:CDS
TATAAGGACGACTGAGTCGA+CGG 0.542612 4_4:-36565484 Msa0679100:CDS
TGATGAGTTCTTCCTAACTC+AGG 0.542722 4_4:-36563320 Msa0679100:three_prime_UTR
TCATTTGATTGGAGCTGCAG+TGG 0.544715 4_4:-36563440 Msa0679100:CDS
CGGGCTACCTGGTTGCCACA+AGG 0.556849 4_4:-36565390 Msa0679100:intron
AGGATGTGTCAATAGGAGCT+TGG 0.557584 4_4:-36563931 Msa0679100:CDS
CGCGAAACTAGAGATATGTA+TGG 0.560067 4_4:-36565731 Msa0679100:CDS
GATACCATGAACCTGAGCAT+TGG 0.565176 4_4:-36564166 Msa0679100:CDS
AAGAAACTAGAGGAAGAGAA+AGG 0.565582 4_4:-36565244 Msa0679100:CDS
TTACCAGTTTCTGAAGCTGT+CGG 0.571354 4_4:+36566020 None:intergenic
AGTTACAAGATCTGGAAATG+AGG 0.572395 4_4:-36565754 Msa0679100:CDS
TTAACTAGTGCTACATCAGG+AGG 0.577145 4_4:-36564921 Msa0679100:intron
AAGAGAGAATGCTTGCTCCA+TGG 0.578870 4_4:-36563164 Msa0679100:three_prime_UTR
AGATAGAGCTATTGAAGCAG+AGG 0.580020 4_4:-36564892 Msa0679100:CDS
TTATGAACCTTGTGGCAACC+AGG 0.580745 4_4:+36565383 None:intergenic
CATACAACTGCCCTGTGGCA+TGG 0.582197 4_4:+36564111 None:intergenic
CTTTAGCAGCAGGAAAAGAA+GGG 0.584908 4_4:-36565421 Msa0679100:CDS
AAAGAAGTACATAGAAGGTG+TGG 0.587665 4_4:-36563392 Msa0679100:CDS
GATCAGAAGTGCCAATGCTA+CGG 0.587686 4_4:+36562825 None:intergenic
GAAGCAGAGGACAGAAAGCA+TGG 0.588213 4_4:-36564879 Msa0679100:CDS
TACTTCTTTAATCCTATCAG+CGG 0.588432 4_4:+36563406 None:intergenic
AGTTAGGAAGAACTCATCAA+AGG 0.596741 4_4:+36563324 None:intergenic
AGAAAGTACCTTATGGTCGT+AGG 0.607267 4_4:-36565456 Msa0679100:CDS
ATCCCATAAGCTCACAGCAG+TGG 0.610258 4_4:+36564633 None:intergenic
GAAAGCATGGAGATTTCTTG+AGG 0.614966 4_4:-36564866 Msa0679100:CDS
AACTAGAGATATGTATGGTG+AGG 0.616447 4_4:-36565726 Msa0679100:CDS
TTGGTTTATTGGACTTGACG+TGG 0.621784 4_4:-36563912 Msa0679100:CDS
AGATGGACTTGGCTGCTGCG+AGG 0.622009 4_4:-36565551 Msa0679100:CDS
TGCGCTTTGTAATTGGACAC+AGG 0.622431 4_4:-36565213 Msa0679100:intron
ATAAGGACGACTGAGTCGAC+GGG 0.634555 4_4:-36565483 Msa0679100:CDS
AGTACTTCCGCCATGCCACA+GGG 0.639704 4_4:-36564121 Msa0679100:CDS
TCTTCATAAGTATGCCAATG+AGG 0.642056 4_4:-36563951 Msa0679100:CDS
ATGTATGGTGAGGATTTCAA+GGG 0.651553 4_4:-36565716 Msa0679100:CDS
TGACAAAAGAAAGAAACTAG+AGG 0.651999 4_4:-36565254 Msa0679100:CDS
AAATTGTTACGAAGTAGAGT+CGG 0.664201 4_4:+36562859 None:intergenic
GTTCAAGAGTCAGTACGAAG+TGG 0.682952 4_4:-36565525 Msa0679100:CDS
TATCTTAGTAATTCCCCTAG+GGG 0.695288 4_4:-36562891 Msa0679100:three_prime_UTR
TTAGACACCGATCAAAACAA+CGG 0.706941 4_4:-36564320 Msa0679100:CDS
ACAACTGCCCTGTGGCATGG+CGG 0.712956 4_4:+36564114 None:intergenic
AATAGCATACAACTGCCCTG+TGG 0.783392 4_4:+36564106 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATACAAAAATAATAATAAT+TGG + chr4_4:36563295-36563314 None:intergenic 10.0%
!!! AATTTTTTTTTTTTGAAGAA+CGG - chr4_4:36563937-36563956 Msa0679100:CDS 10.0%
!! AACAATATTATTATATTGTT+AGG + chr4_4:36564476-36564495 None:intergenic 10.0%
!!! AAGTATACATTTTTTAAAAC+TGG + chr4_4:36564213-36564232 None:intergenic 15.0%
!!! AAATTTTTTGTAATGAATCA+AGG - chr4_4:36564681-36564700 Msa0679100:CDS 15.0%
!!! AAATTATTCTTTGATTTAGT+AGG + chr4_4:36564890-36564909 None:intergenic 15.0%
!! CCAAATTATATCAATTTATT+AGG + chr4_4:36565933-36565952 None:intergenic 15.0%
!! CCTAATAAATTGATATAATT+TGG - chr4_4:36565930-36565949 Msa0679100:intron 15.0%
!! AATAAATTGATATAATTTGG+TGG - chr4_4:36565933-36565952 Msa0679100:intron 15.0%
!! ACACATAAATAATCAATTAT+TGG + chr4_4:36565980-36565999 None:intergenic 15.0%
!! ATAATTGATTATTTATGTGT+TGG - chr4_4:36565980-36565999 Msa0679100:intron 15.0%
!! AGAAATGTTAATATCATAAC+AGG - chr4_4:36562850-36562869 Msa0679100:three_prime_UTR 20.0%
!!! TACTTTTTTTTTATCAAGCA+AGG + chr4_4:36563092-36563111 None:intergenic 20.0%
!!! CTATTTTATTACTAGTGTTA+CGG - chr4_4:36563613-36563632 Msa0679100:intron 20.0%
!! GATTCAAAATGCTTTAATAA+AGG - chr4_4:36563811-36563830 Msa0679100:intron 20.0%
!!! TATACATTTTTTAAAACTGG+TGG + chr4_4:36564210-36564229 None:intergenic 20.0%
!! ATCAAACTAAATCAAATCAA+TGG - chr4_4:36564910-36564929 Msa0679100:CDS 20.0%
!! ATAAGTTCAAATAAGTCAAT+CGG + chr4_4:36565150-36565169 None:intergenic 20.0%
!! TACAAACCTAAAAAGATAAT+GGG + chr4_4:36565377-36565396 None:intergenic 20.0%
!! ATACAAACCTAAAAAGATAA+TGG + chr4_4:36565378-36565397 None:intergenic 20.0%
!! AGTTAACACTTTCAAATTAT+TGG - chr4_4:36565408-36565427 Msa0679100:CDS 20.0%
!! GTTAACACTTTCAAATTATT+GGG - chr4_4:36565409-36565428 Msa0679100:CDS 20.0%
!! TGGACAAAAATATATAGAAA+AGG + chr4_4:36565687-36565706 None:intergenic 20.0%
!! ATATTTCTCTCTATATATAC+TGG + chr4_4:36565707-36565726 None:intergenic 20.0%
!! AATAATCAATTATTGGCAAA+AGG + chr4_4:36565973-36565992 None:intergenic 20.0%
! GTTAATATCATAACAGGATA+TGG - chr4_4:36562856-36562875 Msa0679100:three_prime_UTR 25.0%
! GACTATTTCAAATTTAGAGA+TGG - chr4_4:36563361-36563380 Msa0679100:CDS 25.0%
!!! GATTTGTTCTTTTGATAACA+TGG - chr4_4:36563644-36563663 Msa0679100:intron 25.0%
!!! CTTTTGATAACATGGATAAT+AGG - chr4_4:36563652-36563671 Msa0679100:intron 25.0%
!!! TATTAAAGCATTTTGAATCG+TGG + chr4_4:36563810-36563829 None:intergenic 25.0%
! AAGTCATAACTCAACTATAT+TGG - chr4_4:36563904-36563923 Msa0679100:CDS 25.0%
! GAAAAAACGTATAATTGATC+TGG - chr4_4:36563974-36563993 Msa0679100:intron 25.0%
! AAAGATGAGAAAAGGAAAAT+GGG + chr4_4:36564137-36564156 None:intergenic 25.0%
! AAAAGATGAGAAAAGGAAAA+TGG + chr4_4:36564138-36564157 None:intergenic 25.0%
! GTATTACAAAAGATGAGAAA+AGG + chr4_4:36564145-36564164 None:intergenic 25.0%
! GATGATGTTCATGTAAATAT+AGG - chr4_4:36564343-36564362 Msa0679100:CDS 25.0%
! ATACATATCTATAAACCAGT+AGG - chr4_4:36564863-36564882 Msa0679100:CDS 25.0%
! TGTTTGTATATGTTCATATC+AGG - chr4_4:36564950-36564969 Msa0679100:intron 25.0%
!!! GTTGTTTTTATAAGTTTTGC+TGG + chr4_4:36565258-36565277 None:intergenic 25.0%
! AATTAAGCTGTTTATCCAAA+CGG - chr4_4:36565350-36565369 Msa0679100:intron 25.0%
! ATCTCTTCTTAAAATGTAGA+AGG + chr4_4:36565792-36565811 None:intergenic 25.0%
!!! TTTTAAGAAGAGATTGTTCA+TGG - chr4_4:36565798-36565817 Msa0679100:intron 25.0%
! GGAACTATTAACAAACAAAA+TGG + chr4_4:36565891-36565910 None:intergenic 25.0%
!! TTGTTTGTTAATAGTTCCAA+TGG - chr4_4:36565893-36565912 Msa0679100:intron 25.0%
TAAATTGAATGTAGTTTCCG+AGG - chr4_4:36562929-36562948 Msa0679100:three_prime_UTR 30.0%
AATTCGAAAATTGTAAGCGT+CGG - chr4_4:36563057-36563076 Msa0679100:three_prime_UTR 30.0%
AGATCTTGTAACTAAATTGG+AGG + chr4_4:36563168-36563187 None:intergenic 30.0%
TCCAATTTAGTTACAAGATC+TGG - chr4_4:36563167-36563186 Msa0679100:three_prime_UTR 30.0%
TCCAGATCTTGTAACTAAAT+TGG + chr4_4:36563171-36563190 None:intergenic 30.0%
ACTGCATATAACTTACTGTT+TGG + chr4_4:36563247-36563266 None:intergenic 30.0%
AAACAGTAAGTTATATGCAG+TGG - chr4_4:36563246-36563265 Msa0679100:three_prime_UTR 30.0%
! TTCAAATTTAGAGATGGACT+TGG - chr4_4:36563367-36563386 Msa0679100:CDS 30.0%
TATTAATACCTACGACCATA+AGG + chr4_4:36563484-36563503 None:intergenic 30.0%
AACCATAGAAGCAGATATAT+GGG + chr4_4:36563578-36563597 None:intergenic 30.0%
AAACCATAGAAGCAGATATA+TGG + chr4_4:36563579-36563598 None:intergenic 30.0%
TGACAAAAGAAAGAAACTAG+AGG - chr4_4:36563675-36563694 Msa0679100:intron 30.0%
! CAACGATTTTGTTGCATAAT+TGG - chr4_4:36563757-36563776 Msa0679100:intron 30.0%
ACTTGTGACTGATAAATAGA+TGG + chr4_4:36563888-36563907 None:intergenic 30.0%
!! TTTTTAACTAGTGCTACATC+AGG - chr4_4:36564005-36564024 Msa0679100:intron 30.0%
AAGATGAGAAAAGGAAAATG+GGG + chr4_4:36564136-36564155 None:intergenic 30.0%
TTTATGCAGAATCATGTTGA+AGG - chr4_4:36564235-36564254 Msa0679100:intron 30.0%
TATGCATAAGCATAACAACT+TGG - chr4_4:36564403-36564422 Msa0679100:intron 30.0%
!!! TCAATCTTTTTCAGCAACAT+TGG - chr4_4:36564574-36564593 Msa0679100:intron 30.0%
!!! CAATCTTTTTCAGCAACATT+GGG - chr4_4:36564575-36564594 Msa0679100:intron 30.0%
!!! TGTATATCCGTTGTTTTGAT+CGG + chr4_4:36564619-36564638 None:intergenic 30.0%
TCAAAACAACGGATATACAT+TGG - chr4_4:36564620-36564639 Msa0679100:CDS 30.0%
!!! AAATTTCTCACTTTTGAGAC+AGG + chr4_4:36564667-36564686 None:intergenic 30.0%
TTCAAGAACAAATATTCACC+TGG + chr4_4:36565081-36565100 None:intergenic 30.0%
AACCTAAATCATGGTTTGAA+CGG + chr4_4:36565122-36565141 None:intergenic 30.0%
ACATTTGCAAGAATGCTTAT+TGG - chr4_4:36565182-36565201 Msa0679100:intron 30.0%
! GGAAGTAAGTTGAAAACTTA+TGG + chr4_4:36565226-36565245 None:intergenic 30.0%
ATTAAGCTGTTTATCCAAAC+GGG - chr4_4:36565351-36565370 Msa0679100:intron 30.0%
ACACTTTCAAATTATTGGGT+TGG - chr4_4:36565413-36565432 Msa0679100:CDS 30.0%
! TTATGTTTTCAGATTGCGAA+TGG - chr4_4:36565436-36565455 Msa0679100:CDS 30.0%
!! TTTGTGTTGCTTCATTTGAT+TGG - chr4_4:36565478-36565497 Msa0679100:CDS 30.0%
TACTTCTTTAATCCTATCAG+CGG + chr4_4:36565526-36565545 None:intergenic 30.0%
! GGATTAAAGAAGTACATAGA+AGG - chr4_4:36565532-36565551 Msa0679100:CDS 30.0%
GGAAAAAAGAAAAATCTTGC+AGG + chr4_4:36565666-36565685 None:intergenic 30.0%
! TCTATTCTTTGTTGCTTGAA+AGG - chr4_4:36565864-36565883 Msa0679100:intron 30.0%
! CTATTCTTTGTTGCTTGAAA+GGG - chr4_4:36565865-36565884 Msa0679100:intron 30.0%
TCAATTATTGGCAAAAGGAA+AGG + chr4_4:36565968-36565987 None:intergenic 30.0%
AAATTGTTACGAAGTAGAGT+CGG + chr4_4:36566073-36566092 None:intergenic 30.0%
TATTAATATCTCCGTAGCAT+TGG - chr4_4:36566093-36566112 Msa0679100:CDS 30.0%
! TGGAGTATTCCTGAACAAAA+TGG - chr4_4:36562876-36562895 Msa0679100:three_prime_UTR 35.0%
! TGTTCTTTTCTTGTGTCTGT+TGG - chr4_4:36563142-36563161 Msa0679100:three_prime_UTR 35.0%
AGTTACAAGATCTGGAAATG+AGG - chr4_4:36563175-36563194 Msa0679100:three_prime_UTR 35.0%
AACTAGAGATATGTATGGTG+AGG - chr4_4:36563203-36563222 Msa0679100:three_prime_UTR 35.0%
TATGTATGGTGAGGATTTCA+AGG - chr4_4:36563212-36563231 Msa0679100:three_prime_UTR 35.0%
ATGTATGGTGAGGATTTCAA+GGG - chr4_4:36563213-36563232 Msa0679100:three_prime_UTR 35.0%
TTGGACTTACGATTACATCA+TGG + chr4_4:36563276-36563295 None:intergenic 35.0%
ACAGCACATTTGCATTAGTT+TGG + chr4_4:36563318-36563337 None:intergenic 35.0%
CTGTATTGAATGTAGAGCTT+TGG - chr4_4:36563334-36563353 Msa0679100:three_prime_UTR 35.0%
CTCCTGTTTCAGAAGATATA+AGG - chr4_4:36563429-36563448 Msa0679100:CDS 35.0%
!! GTCCTTATATCTTCTGAAAC+AGG + chr4_4:36563434-36563453 None:intergenic 35.0%
GGATCAAATTATGAACCTTG+TGG + chr4_4:36563557-36563576 None:intergenic 35.0%
ATCCCATATATCTGCTTCTA+TGG - chr4_4:36563573-36563592 Msa0679100:intron 35.0%
AAGAAACTAGAGGAAGAGAA+AGG - chr4_4:36563685-36563704 Msa0679100:intron 35.0%
ATTGTCATGCGCTTTGTAAT+TGG - chr4_4:36563709-36563728 Msa0679100:intron 35.0%
!! GTTTCTACATCGTGTTTTTG+AGG - chr4_4:36563779-36563798 Msa0679100:intron 35.0%
!! GACACTGTCATTGCTTTTAA+AGG - chr4_4:36564168-36564187 Msa0679100:CDS 35.0%
TTGTCTTTGCTGACAATTCA+AGG + chr4_4:36564264-36564283 None:intergenic 35.0%
GAGCAGGATATTAAGACAAA+AGG + chr4_4:36564556-36564575 None:intergenic 35.0%
TTAGACACCGATCAAAACAA+CGG - chr4_4:36564609-36564628 Msa0679100:CDS 35.0%
TACATTGGATGCATGAAATC+TGG - chr4_4:36564635-36564654 Msa0679100:CDS 35.0%
! TTTGATTTAGTAGGACCTAC+TGG + chr4_4:36564881-36564900 None:intergenic 35.0%
TCTTCATAAGTATGCCAATG+AGG - chr4_4:36564978-36564997 Msa0679100:intron 35.0%
TCAATAGGAGCTTGGTTTAT+TGG - chr4_4:36565006-36565025 Msa0679100:intron 35.0%
AAGAACAAATATTCACCTGG+AGG + chr4_4:36565078-36565097 None:intergenic 35.0%
ACCTAAATCATGGTTTGAAC+GGG + chr4_4:36565121-36565140 None:intergenic 35.0%
! AAAGAAGTACATAGAAGGTG+TGG - chr4_4:36565537-36565556 Msa0679100:CDS 35.0%
GAGAAGGTGAAAATGCTTTA+TGG - chr4_4:36565559-36565578 Msa0679100:CDS 35.0%
! TTTATGGAGTGCTTCTTTCT+AGG - chr4_4:36565575-36565594 Msa0679100:CDS 35.0%
AGTTAGGAAGAACTCATCAA+AGG + chr4_4:36565608-36565627 None:intergenic 35.0%
GGTAATAATCTTCCTGAGTT+AGG + chr4_4:36565624-36565643 None:intergenic 35.0%
AAAGAAAAATCTTGCAGGCT+TGG + chr4_4:36565661-36565680 None:intergenic 35.0%
CTTAAAATGTAGAAGGTCCA+TGG + chr4_4:36565785-36565804 None:intergenic 35.0%
TGTATCTTAGTAATTCCCCT+AGG - chr4_4:36566036-36566055 Msa0679100:CDS 35.0%
GTATCTTAGTAATTCCCCTA+GGG - chr4_4:36566037-36566056 Msa0679100:CDS 35.0%
TATCTTAGTAATTCCCCTAG+GGG - chr4_4:36566038-36566057 Msa0679100:CDS 35.0%
! CTTGCAAGTCCATTTTGTTC+AGG + chr4_4:36562888-36562907 None:intergenic 40.0%
!! TTACCAGTTTCTGAAGCTGT+CGG + chr4_4:36562912-36562931 None:intergenic 40.0%
CGCGAAACTAGAGATATGTA+TGG - chr4_4:36563198-36563217 Msa0679100:three_prime_UTR 40.0%
!! AGAAAGTACCTTATGGTCGT+AGG - chr4_4:36563473-36563492 Msa0679100:CDS 40.0%
TTAATACTGCCTTTAGCAGC+AGG - chr4_4:36563498-36563517 Msa0679100:intron 40.0%
CTTTAGCAGCAGGAAAAGAA+GGG - chr4_4:36563508-36563527 Msa0679100:intron 40.0%
TTAACTAGTGCTACATCAGG+AGG - chr4_4:36564008-36564027 Msa0679100:intron 40.0%
! CTGCTTCAATAGCTCTATCT+AGG + chr4_4:36564037-36564056 None:intergenic 40.0%
AGATAGAGCTATTGAAGCAG+AGG - chr4_4:36564037-36564056 Msa0679100:intron 40.0%
! GAAAGCATGGAGATTTCTTG+AGG - chr4_4:36564063-36564082 Msa0679100:intron 40.0%
TGAGAAAAGGAAAATGGGGT+AGG + chr4_4:36564132-36564151 None:intergenic 40.0%
GTTGCTGAAAAAGATTGAGC+AGG + chr4_4:36564572-36564591 None:intergenic 40.0%
TTCTTACCTTGTTGCACAGA+GGG - chr4_4:36564736-36564755 Msa0679100:intron 40.0%
TCCTATTGACACATCCTCAT+TGG + chr4_4:36564995-36565014 None:intergenic 40.0%
TTGGTTTATTGGACTTGACG+TGG - chr4_4:36565017-36565036 Msa0679100:intron 40.0%
ACCCGTTCAAACCATGATTT+AGG - chr4_4:36565117-36565136 Msa0679100:intron 40.0%
TCGGAACAGAACCTAAATCA+TGG + chr4_4:36565131-36565150 None:intergenic 40.0%
! AAGTTTTGCTGGAGAGCTAA+TGG + chr4_4:36565247-36565266 None:intergenic 40.0%
!! AAAAAGATAATGGGCCCGTT+TGG + chr4_4:36565368-36565387 None:intergenic 40.0%
! AACGGGCCCATTATCTTTTT+AGG - chr4_4:36565368-36565387 Msa0679100:intron 40.0%
! GTTTTCAGATTGCGAATGGA+AGG - chr4_4:36565440-36565459 Msa0679100:CDS 40.0%
TGATGAGTTCTTCCTAACTC+AGG - chr4_4:36565609-36565628 Msa0679100:intron 40.0%
! TCATGGTTTGCAGCTAGATA+AGG - chr4_4:36565815-36565834 Msa0679100:intron 40.0%
! TCGGTATATTTTTCCCCTAG+GGG + chr4_4:36566054-36566073 None:intergenic 40.0%
! GTCGGTATATTTTTCCCCTA+GGG + chr4_4:36566055-36566074 None:intergenic 40.0%
! AGTCGGTATATTTTTCCCCT+AGG + chr4_4:36566056-36566075 None:intergenic 40.0%
GTTCAAGAGTCAGTACGAAG+TGG - chr4_4:36563404-36563423 Msa0679100:CDS 45.0%
TATAAGGACGACTGAGTCGA+CGG - chr4_4:36563445-36563464 Msa0679100:CDS 45.0%
!! GGGCAAGAGAAAGTACCTTA+TGG - chr4_4:36563466-36563485 Msa0679100:CDS 45.0%
! CCTTCTTTTCCTGCTGCTAA+AGG + chr4_4:36563510-36563529 None:intergenic 45.0%
CCTTTAGCAGCAGGAAAAGA+AGG - chr4_4:36563507-36563526 Msa0679100:intron 45.0%
TTATGAACCTTGTGGCAACC+AGG + chr4_4:36563549-36563568 None:intergenic 45.0%
TGCGCTTTGTAATTGGACAC+AGG - chr4_4:36563716-36563735 Msa0679100:intron 45.0%
!!! TCTCACTTTTGAGACAGGAC+AGG + chr4_4:36564662-36564681 None:intergenic 45.0%
CTCTGTGCAACAAGGTAAGA+AGG + chr4_4:36564737-36564756 None:intergenic 45.0%
CTTCTTACCTTGTTGCACAG+AGG - chr4_4:36564735-36564754 Msa0679100:intron 45.0%
TCTTACCTTGTTGCACAGAG+GGG - chr4_4:36564737-36564756 Msa0679100:intron 45.0%
GATACCATGAACCTGAGCAT+TGG - chr4_4:36564763-36564782 Msa0679100:intron 45.0%
ACTTCCAATGCTCAGGTTCA+TGG + chr4_4:36564770-36564789 None:intergenic 45.0%
!! GAACCTGAGCATTGGAAGTT+TGG - chr4_4:36564771-36564790 Msa0679100:intron 45.0%
AATAGCATACAACTGCCCTG+TGG + chr4_4:36564826-36564845 None:intergenic 45.0%
GCCAATGAGGATGTGTCAAT+AGG - chr4_4:36564991-36565010 Msa0679100:intron 45.0%
AGGATGTGTCAATAGGAGCT+TGG - chr4_4:36564998-36565017 Msa0679100:intron 45.0%
TCATTTGATTGGAGCTGCAG+TGG - chr4_4:36565489-36565508 Msa0679100:CDS 45.0%
GAATTTGTAGGTCCGCTGAT+AGG - chr4_4:36565511-36565530 Msa0679100:CDS 45.0%
! GTACATAGAAGGTGTGGAGA+AGG - chr4_4:36565543-36565562 Msa0679100:CDS 45.0%
! TTGCAGGCTTGGTTTCTTTC+TGG + chr4_4:36565650-36565669 None:intergenic 45.0%
CTTTACACGCGAGAAAAAGC+TGG - chr4_4:36565729-36565748 Msa0679100:CDS 45.0%
AAGAGAGAATGCTTGCTCCA+TGG - chr4_4:36565765-36565784 Msa0679100:intron 45.0%
!! GATCAGAAGTGCCAATGCTA+CGG + chr4_4:36566107-36566126 None:intergenic 45.0%
AGACCGACAGCTTCAGAAAC+TGG - chr4_4:36562906-36562925 Msa0679100:three_prime_UTR 50.0%
ATAAGGACGACTGAGTCGAC+GGG - chr4_4:36563446-36563465 Msa0679100:CDS 50.0%
CAGCAGGAAAAGAAGGGACT+CGG - chr4_4:36563514-36563533 Msa0679100:intron 50.0%
! GGAAAAGAAGGGACTCGGTT+CGG - chr4_4:36563519-36563538 Msa0679100:intron 50.0%
! GAAAAGAAGGGACTCGGTTC+GGG - chr4_4:36563520-36563539 Msa0679100:intron 50.0%
GAAGCAGAGGACAGAAAGCA+TGG - chr4_4:36564050-36564069 Msa0679100:intron 50.0%
GCATGGAGATTTCTTGAGGC+TGG - chr4_4:36564067-36564086 Msa0679100:intron 50.0%
TTGCCACTGCTGTGAGCTTA+TGG - chr4_4:36564293-36564312 Msa0679100:CDS 50.0%
TGCCACTGCTGTGAGCTTAT+GGG - chr4_4:36564294-36564313 Msa0679100:CDS 50.0%
ATCCCATAAGCTCACAGCAG+TGG + chr4_4:36564299-36564318 None:intergenic 50.0%
TCTTACCCCTCTGTGCAACA+AGG + chr4_4:36564745-36564764 None:intergenic 50.0%
TCGCCAAACTTCCAATGCTC+AGG + chr4_4:36564777-36564796 None:intergenic 50.0%
CATTGGAAGTTTGGCGAGTC+TGG - chr4_4:36564780-36564799 Msa0679100:intron 50.0%
GATGACCGAAGACTTTGCTG+TGG - chr4_4:36565048-36565067 Msa0679100:intron 50.0%
GAGTGCCACAGCAAAGTCTT+CGG + chr4_4:36565056-36565075 None:intergenic 50.0%
GGAGCTGCAGTGGAATTTGT+AGG - chr4_4:36565499-36565518 Msa0679100:CDS 50.0%
! GGCTTGGTTTCTTTCTGGAG+TGG + chr4_4:36565645-36565664 None:intergenic 50.0%
! GGAGCTTGATAGCTAGCCAT+TGG + chr4_4:36565912-36565931 None:intergenic 50.0%
AAGTACTTCCGCCATGCCAC+AGG - chr4_4:36564807-36564826 Msa0679100:intron 55.0%
AGTACTTCCGCCATGCCACA+GGG - chr4_4:36564808-36564827 Msa0679100:intron 55.0%
CATACAACTGCCCTGTGGCA+TGG + chr4_4:36564821-36564840 None:intergenic 55.0%
! AGATGGACTTGGCTGCTGCG+AGG - chr4_4:36563378-36563397 Msa0679100:CDS 60.0%
! GATGGACTTGGCTGCTGCGA+GGG - chr4_4:36563379-36563398 Msa0679100:CDS 60.0%
ACAACTGCCCTGTGGCATGG+CGG + chr4_4:36564818-36564837 None:intergenic 60.0%
! CTTTGCTGTGGCACTCCTCC+AGG - chr4_4:36565060-36565079 Msa0679100:intron 60.0%
! TGCGAATGGAAGGCGCAAGC+AGG - chr4_4:36565450-36565469 Msa0679100:CDS 60.0%
CGGGCTACCTGGTTGCCACA+AGG - chr4_4:36563539-36563558 Msa0679100:intron 65.0%
!! GGGACTCGGTTCGGGCTACC+TGG - chr4_4:36563528-36563547 Msa0679100:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 36562823 36566128 36562823 ID=Msa0679100;Name=Msa0679100
chr4_4 mRNA 36562823 36566128 36562823 ID=Msa0679100-mRNA-1;Parent=Msa0679100;Name=Msa0679100-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0|0.88|0.8|1|1|1|10|532|368
chr4_4 exon 36562823 36563503 36562823 ID=Msa0679100-mRNA-1:exon:8599;Parent=Msa0679100-mRNA-1
chr4_4 exon 36563885 36563979 36563885 ID=Msa0679100-mRNA-1:exon:8598;Parent=Msa0679100-mRNA-1
chr4_4 exon 36564071 36564196 36564071 ID=Msa0679100-mRNA-1:exon:8597;Parent=Msa0679100-mRNA-1
chr4_4 exon 36564276 36564363 36564276 ID=Msa0679100-mRNA-1:exon:8596;Parent=Msa0679100-mRNA-1
chr4_4 exon 36564587 36564707 36564587 ID=Msa0679100-mRNA-1:exon:8595;Parent=Msa0679100-mRNA-1
chr4_4 exon 36564863 36564935 36564863 ID=Msa0679100-mRNA-1:exon:8594;Parent=Msa0679100-mRNA-1
chr4_4 exon 36565214 36565277 36565214 ID=Msa0679100-mRNA-1:exon:8593;Parent=Msa0679100-mRNA-1
chr4_4 exon 36565391 36565602 36565391 ID=Msa0679100-mRNA-1:exon:8592;Parent=Msa0679100-mRNA-1
chr4_4 exon 36565701 36565774 36565701 ID=Msa0679100-mRNA-1:exon:8591;Parent=Msa0679100-mRNA-1
chr4_4 exon 36566024 36566128 36566024 ID=Msa0679100-mRNA-1:exon:8590;Parent=Msa0679100-mRNA-1
chr4_4 CDS 36566024 36566128 36566024 ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4 CDS 36565701 36565774 36565701 ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4 CDS 36565391 36565602 36565391 ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4 CDS 36565214 36565277 36565214 ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4 CDS 36564863 36564935 36564863 ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4 CDS 36564587 36564707 36564587 ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4 CDS 36564276 36564363 36564276 ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4 CDS 36564071 36564196 36564071 ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4 CDS 36563885 36563979 36563885 ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4 CDS 36563355 36563503 36563355 ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4 three_prime_UTR 36562823 36563354 36562823 ID=Msa0679100-mRNA-1:three_prime_utr;Parent=Msa0679100-mRNA-1
Gene Sequence

>Msa0679100

ATGGTTATTGTGTTACTTTTTCTGATAAGAAATGTTAATATCATAACAGGATATGGAGTATTCCTGAACAAAATGGACTTGCAAGACCGACAGCTTCAGAAACTGTTACAAGATCTGGAAATGAGGCGCGAAACTAGAGATATGTATGGTGAGGATTTCAAGGGTCATAATTCCAAACAAGCTTTGGATAAGACTATTTCAAATTTAGAGATGGACTTGGCTGCTGCGAGGGCTGTTCAAGAGTCAGTACGAAGTGGTGCTCCTGTTTCAGAAGATATAAGGACGACTGAGTCGACGGGCAAGAGAAAGTACCTTATGGTCGTAGGTATTAATACTGCCTTTAGCAGCAGGAAAAGAAGGGACTCGGTTCGGGCTACCTGGTTGCCACAAGGTGACAAAAGAAAGAAACTAGAGGAAGAGAAAGGCATTGTCATGCGCTTTGTAATTGGACACAGTGCTACATCAGGAGGTATCCTAGATAGAGCTATTGAAGCAGAGGACAGAAAGCATGGAGATTTCTTGAGGCTGAATCATGTTGAAGGATACCTTGAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTGAGCTTATGGGATGCTGATTTTTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGCAACATTGGGAGAAACTCTAGTTAGACACCGATCAAAACAACGGATATACATTGGATGCATGAAATCTGGACCTGTCCTGTCTCAAAAAGGGGTAAGATACCATGAACCTGAGCATTGGAAGTTTGGCGAGTCTGGAAATAAGTACTTCCGCCATGCCACAGGGCAGTTGTATGCTATTTCAAATGATTTAGCAACATACATATCTATAAACCAGAACGTTCTTCATAAGTATGCCAATGAGGATGTGTCAATAGGAGCTTGGTTTATTGGACTTGACGTGGAGCATATTGATGACCGAAGACTTTGCTATTGCGAATGGAAGGCGCAAGCAGGCAACATTTGTGTTGCTTCATTTGATTGGAGCTGCAGTGGAATTTGTAGGTCCGCTGATAGGATTAAAGAAGTACATAGAAGGTGTGGAGAAGGTGAAAATGCTTTATGGAGTGCTTCTTTCTAG

Protein sequence

>Msa0679100

MVIVLLFLIRNVNIITGYGVFLNKMDLQDRQLQKLLQDLEMRRETRDMYGEDFKGHNSKQALDKTISNLEMDLAAARAVQESVRSGAPVSEDIRTTESTGKRKYLMVVGINTAFSSRKRRDSVRATWLPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDRKHGDFLRLNHVEGYLELSAKTKTYFATAVSLWDADFYVKVDDDVHVNIATLGETLVRHRSKQRIYIGCMKSGPVLSQKGVRYHEPEHWKFGESGNKYFRHATGQLYAISNDLATYISINQNVLHKYANEDVSIGAWFIGLDVEHIDDRRLCYCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSASF*