AlfalfaGEDB | Msa0679100

M. sativa cultivar zhongmu-4 / Msa0679100

KEGG: K20855
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF13334.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0679100	KEH29682.1	97.994	349	2	1	25	368	1	349	0.0	705

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0679100	sp\|A8MRC7\|B3GT2_ARATH	79.412	340	65	1	34	368	68	407	0.0	576

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0679100	A0A072UJ17	97.994	349	2	1	25	368	1	349	0.0	705

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0679100	0.805613	1.226577e-49	-8.615850e-47
Msa0002560	Msa0679100	0.864266	1.375976e-64	-8.615850e-47
Msa0002680	Msa0679100	0.860407	2.110895e-63	-8.615850e-47
Msa0002710	Msa0679100	0.830566	2.732092e-55	-8.615850e-47
Msa0003220	Msa0679100	0.865053	7.806080e-65	-8.615850e-47
Msa0003270	Msa0679100	0.843476	1.369087e-58	-8.615850e-47
Msa0004540	Msa0679100	0.832594	8.648913e-56	-8.615850e-47
Msa0007850	Msa0679100	0.804463	2.134791e-49	-8.615850e-47
Msa0007970	Msa0679100	0.820210	7.736943e-53	-8.615850e-47
Msa0008220	Msa0679100	0.850178	2.008215e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0679100	MtrunA17_Chr4g0024631	97.647	340	3	1	34	368	68	407	0.0	686
Msa0679100	MtrunA17_Chr2g0322591	80.236	339	59	2	34	368	68	402	0.0	566
Msa0679100	MtrunA17_Chr3g0115251	61.702	376	133	3	1	368	22	394	6.11e-172	484
Msa0679100	MtrunA17_Chr4g0004991	71.479	284	76	1	90	368	11	294	1.44e-159	449
Msa0679100	MtrunA17_Chr4g0017871	64.609	243	81	1	128	365	4	246	1.79e-124	358
Msa0679100	MtrunA17_Chr5g0396961	46.863	271	134	4	64	333	80	341	9.04e-82	253
Msa0679100	MtrunA17_Chr3g0126221	47.970	271	131	5	64	333	80	341	1.12e-79	248
Msa0679100	MtrunA17_Chr1g0149521	44.015	259	134	5	62	319	85	333	2.81e-67	216
Msa0679100	MtrunA17_Chr8g0360581	32.934	334	186	10	49	355	6	328	8.93e-51	173
Msa0679100	MtrunA17_Chr2g0316241	35.798	257	153	6	101	354	74	321	5.31e-50	171

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0679100	AT1G05170.2	79.412	340	65	1	34	368	68	407	0.0	576
Msa0679100	AT2G32430.1	78.006	341	70	1	33	368	69	409	0.0	548
Msa0679100	AT4G26940.1	77.410	332	71	1	41	368	76	407	0.0	535
Msa0679100	AT1G05170.1	78.322	286	62	0	34	319	68	353	2.52e-171	482
Msa0679100	AT1G32930.1	60.753	372	138	3	2	368	31	399	3.50e-168	475
Msa0679100	AT1G11730.1	67.925	318	91	2	55	367	72	383	1.59e-165	468
Msa0679100	AT1G77810.2	58.808	369	130	4	6	366	28	382	9.99e-159	451
Msa0679100	AT1G77810.1	58.333	372	130	5	6	366	28	385	1.69e-156	445
Msa0679100	AT1G33430.1	61.272	346	118	5	29	368	58	393	3.85e-150	429
Msa0679100	AT1G33430.2	59.887	354	118	6	29	368	58	401	8.48e-147	421

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Find 108 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGTACATAGAAGGTG+TGG	0.587665	4_4:-36563392	Msa0679100:CDS
AAATTGTTACGAAGTAGAGT+CGG	0.664201	4_4:+36562859	None:intergenic
AACTAGAGATATGTATGGTG+AGG	0.616447	4_4:-36565726	Msa0679100:CDS
AAGAAACTAGAGGAAGAGAA+AGG	0.565582	4_4:-36565244	Msa0679100:CDS
AAGAGAGAATGCTTGCTCCA+TGG	0.578870	4_4:-36563164	Msa0679100:three_prime_UTR
AAGTACTTCCGCCATGCCAC+AGG	0.472843	4_4:-36564122	Msa0679100:CDS
AATAAATTGATATAATTTGG+TGG	0.503156	4_4:-36562996	Msa0679100:three_prime_UTR
AATAATCAATTATTGGCAAA+AGG	0.465631	4_4:+36562959	None:intergenic
AATAGCATACAACTGCCCTG+TGG	0.783392	4_4:+36564106	None:intergenic
ACAACTGCCCTGTGGCATGG+CGG	0.712956	4_4:+36564114	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAATTGAATGTAGTTTCCG+AGG	-	chr4_4:36562929-36562948	Msa0679100:three_prime_UTR	30.0%
AATTCGAAAATTGTAAGCGT+CGG	-	chr4_4:36563057-36563076	Msa0679100:three_prime_UTR	30.0%
AGATCTTGTAACTAAATTGG+AGG	+	chr4_4:36563168-36563187	None:intergenic	30.0%
TCCAATTTAGTTACAAGATC+TGG	-	chr4_4:36563167-36563186	Msa0679100:three_prime_UTR	30.0%
TCCAGATCTTGTAACTAAAT+TGG	+	chr4_4:36563171-36563190	None:intergenic	30.0%
ACTGCATATAACTTACTGTT+TGG	+	chr4_4:36563247-36563266	None:intergenic	30.0%
AAACAGTAAGTTATATGCAG+TGG	-	chr4_4:36563246-36563265	Msa0679100:three_prime_UTR	30.0%
TATTAATACCTACGACCATA+AGG	+	chr4_4:36563484-36563503	None:intergenic	30.0%
AACCATAGAAGCAGATATAT+GGG	+	chr4_4:36563578-36563597	None:intergenic	30.0%
AAACCATAGAAGCAGATATA+TGG	+	chr4_4:36563579-36563598	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	36562823	36566128	36562823	ID=Msa0679100;Name=Msa0679100
chr4_4	mRNA	36562823	36566128	36562823	ID=Msa0679100-mRNA-1;Parent=Msa0679100;Name=Msa0679100-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0\|0.88\|0.8\|1\|1\|1\|10\|532\|368
chr4_4	exon	36562823	36563503	36562823	ID=Msa0679100-mRNA-1:exon:8599;Parent=Msa0679100-mRNA-1
chr4_4	exon	36563885	36563979	36563885	ID=Msa0679100-mRNA-1:exon:8598;Parent=Msa0679100-mRNA-1
chr4_4	exon	36564071	36564196	36564071	ID=Msa0679100-mRNA-1:exon:8597;Parent=Msa0679100-mRNA-1
chr4_4	exon	36564276	36564363	36564276	ID=Msa0679100-mRNA-1:exon:8596;Parent=Msa0679100-mRNA-1
chr4_4	exon	36564587	36564707	36564587	ID=Msa0679100-mRNA-1:exon:8595;Parent=Msa0679100-mRNA-1
chr4_4	exon	36564863	36564935	36564863	ID=Msa0679100-mRNA-1:exon:8594;Parent=Msa0679100-mRNA-1
chr4_4	exon	36565214	36565277	36565214	ID=Msa0679100-mRNA-1:exon:8593;Parent=Msa0679100-mRNA-1
chr4_4	exon	36565391	36565602	36565391	ID=Msa0679100-mRNA-1:exon:8592;Parent=Msa0679100-mRNA-1
chr4_4	exon	36565701	36565774	36565701	ID=Msa0679100-mRNA-1:exon:8591;Parent=Msa0679100-mRNA-1
chr4_4	exon	36566024	36566128	36566024	ID=Msa0679100-mRNA-1:exon:8590;Parent=Msa0679100-mRNA-1
chr4_4	CDS	36566024	36566128	36566024	ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4	CDS	36565701	36565774	36565701	ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4	CDS	36565391	36565602	36565391	ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4	CDS	36565214	36565277	36565214	ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4	CDS	36564863	36564935	36564863	ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4	CDS	36564587	36564707	36564587	ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4	CDS	36564276	36564363	36564276	ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4	CDS	36564071	36564196	36564071	ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4	CDS	36563885	36563979	36563885	ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4	CDS	36563355	36563503	36563355	ID=Msa0679100-mRNA-1:cds;Parent=Msa0679100-mRNA-1
chr4_4	three_prime_UTR	36562823	36563354	36562823	ID=Msa0679100-mRNA-1:three_prime_utr;Parent=Msa0679100-mRNA-1

Gene Sequence

>Msa0679100

ATGGTTATTGTGTTACTTTTTCTGATAAGAAATGTTAATATCATAACAGGATATGGAGTATTCCTGAACAAAATGGACTTGCAAGACCGACAGCTTCAGAAACTGTTACAAGATCTGGAAATGAGGCGCGAAACTAGAGATATGTATGGTGAGGATTTCAAGGGTCATAATTCCAAACAAGCTTTGGATAAGACTATTTCAAATTTAGAGATGGACTTGGCTGCTGCGAGGGCTGTTCAAGAGTCAGTACGAAGTGGTGCTCCTGTTTCAGAAGATATAAGGACGACTGAGTCGACGGGCAAGAGAAAGTACCTTATGGTCGTAGGTATTAATACTGCCTTTAGCAGCAGGAAAAGAAGGGACTCGGTTCGGGCTACCTGGTTGCCACAAGGTGACAAAAGAAAGAAACTAGAGGAAGAGAAAGGCATTGTCATGCGCTTTGTAATTGGACACAGTGCTACATCAGGAGGTATCCTAGATAGAGCTATTGAAGCAGAGGACAGAAAGCATGGAGATTTCTTGAGGCTGAATCATGTTGAAGGATACCTTGAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTGAGCTTATGGGATGCTGATTTTTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGCAACATTGGGAGAAACTCTAGTTAGACACCGATCAAAACAACGGATATACATTGGATGCATGAAATCTGGACCTGTCCTGTCTCAAAAAGGGGTAAGATACCATGAACCTGAGCATTGGAAGTTTGGCGAGTCTGGAAATAAGTACTTCCGCCATGCCACAGGGCAGTTGTATGCTATTTCAAATGATTTAGCAACATACATATCTATAAACCAGAACGTTCTTCATAAGTATGCCAATGAGGATGTGTCAATAGGAGCTTGGTTTATTGGACTTGACGTGGAGCATATTGATGACCGAAGACTTTGCTATTGCGAATGGAAGGCGCAAGCAGGCAACATTTGTGTTGCTTCATTTGATTGGAGCTGCAGTGGAATTTGTAGGTCCGCTGATAGGATTAAAGAAGTACATAGAAGGTGTGGAGAAGGTGAAAATGCTTTATGGAGTGCTTCTTTCTAG

Protein sequence

>Msa0679100

MVIVLLFLIRNVNIITGYGVFLNKMDLQDRQLQKLLQDLEMRRETRDMYGEDFKGHNSKQALDKTISNLEMDLAAARAVQESVRSGAPVSEDIRTTESTGKRKYLMVVGINTAFSSRKRRDSVRATWLPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDRKHGDFLRLNHVEGYLELSAKTKTYFATAVSLWDADFYVKVDDDVHVNIATLGETLVRHRSKQRIYIGCMKSGPVLSQKGVRYHEPEHWKFGESGNKYFRHATGQLYAISNDLATYISINQNVLHKYANEDVSIGAWFIGLDVEHIDDRRLCYCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSASF*