Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436540 | XP_003609735.1 | 94.149 | 376 | 22 | 0 | 1 | 376 | 1 | 376 | 0.0 | 741 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436540 | sp|A0A1C9CX66|CYC2_CAMAC | 42.703 | 370 | 201 | 7 | 7 | 372 | 28 | 390 | 9.10e-96 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436540 | G7JMR7 | 94.149 | 376 | 22 | 0 | 1 | 376 | 1 | 376 | 0.0 | 741 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1436540 | 0.808068 | 3.714296e-50 | -8.615850e-47 |
| Msa0059880 | Msa1436540 | 0.829260 | 5.686155e-55 | -8.615850e-47 |
| Msa0064990 | Msa1436540 | 0.818053 | 2.395469e-52 | -8.615850e-47 |
| Msa1436540 | Msa1445900 | 0.807122 | 5.897385e-50 | -8.615850e-47 |
| Msa0634290 | Msa1436540 | 0.811305 | 7.483944e-51 | -8.615850e-47 |
| Msa0668220 | Msa1436540 | 0.812756 | 3.612762e-51 | -8.615850e-47 |
| Msa0668230 | Msa1436540 | 0.817776 | 2.767367e-52 | -8.615850e-47 |
| Msa0753410 | Msa1436540 | 0.800474 | 1.417398e-48 | -8.615850e-47 |
| Msa0761420 | Msa1436540 | 0.803657 | 3.139536e-49 | -8.615850e-47 |
| Msa0777070 | Msa1436540 | 0.812397 | 4.327510e-51 | -8.615850e-47 |
| Msa0793570 | Msa1436540 | 0.809957 | 1.463193e-50 | -8.615850e-47 |
| Msa0795330 | Msa1436540 | 0.803207 | 3.891887e-49 | -8.615850e-47 |
| Msa0814160 | Msa1436540 | 0.800980 | 1.117070e-48 | -8.615850e-47 |
| Msa0837550 | Msa1436540 | 0.811456 | 6.936689e-51 | -8.615850e-47 |
| Msa0140270 | Msa1436540 | 0.802550 | 5.318720e-49 | -8.615850e-47 |
| Msa0150910 | Msa1436540 | 0.829438 | 5.148861e-55 | -8.615850e-47 |
| Msa0150920 | Msa1436540 | 0.801402 | 9.160203e-49 | -8.615850e-47 |
| Msa0199860 | Msa1436540 | 0.800648 | 1.306163e-48 | -8.615850e-47 |
| Msa0212550 | Msa1436540 | 0.801358 | 9.348621e-49 | -8.615850e-47 |
| Msa0219060 | Msa1436540 | 0.814298 | 1.654305e-51 | -8.615850e-47 |
| Msa0996980 | Msa1436540 | 0.816033 | 6.812184e-52 | -8.615850e-47 |
| Msa1006170 | Msa1436540 | 0.807842 | 4.149136e-50 | -8.615850e-47 |
| Msa1024350 | Msa1436540 | 0.817204 | 3.722424e-52 | -8.615850e-47 |
| Msa1048350 | Msa1436540 | 0.800437 | 1.441743e-48 | -8.615850e-47 |
| Msa1064940 | Msa1436540 | 0.801853 | 7.403024e-49 | -8.615850e-47 |
| Msa1068080 | Msa1436540 | 0.804396 | 2.204147e-49 | -8.615850e-47 |
| Msa1087380 | Msa1436540 | 0.807654 | 4.547627e-50 | -8.615850e-47 |
| Msa0274260 | Msa1436540 | 0.828237 | 1.005221e-54 | -8.615850e-47 |
| Msa0278950 | Msa1436540 | 0.800943 | 1.136654e-48 | -8.615850e-47 |
| Msa0323090 | Msa1436540 | 0.802770 | 4.791094e-49 | -8.615850e-47 |
| Msa1170340 | Msa1436540 | 0.805202 | 1.495746e-49 | -8.615850e-47 |
| Msa1218520 | Msa1436540 | 0.989000 | 2.793393e-176 | -8.615850e-47 |
| Msa0538440 | Msa1436540 | 0.809823 | 1.564339e-50 | -8.615850e-47 |
| Msa0538450 | Msa1436540 | 0.814760 | 1.307141e-51 | -8.615850e-47 |
| Msa0538520 | Msa1436540 | 0.803807 | 2.921996e-49 | -8.615850e-47 |
| Msa0538530 | Msa1436540 | 0.809029 | 2.314946e-50 | -8.615850e-47 |
| Msa0591490 | Msa1436540 | 0.801808 | 7.560730e-49 | -8.615850e-47 |
| Msa0594330 | Msa1436540 | 0.801142 | 1.034959e-48 | -8.615850e-47 |
| Msa0854840 | Msa1436540 | 0.813625 | 2.328156e-51 | -8.615850e-47 |
| Msa0876600 | Msa1436540 | 0.810768 | 9.779860e-51 | -8.615850e-47 |
| Msa0880750 | Msa1436540 | 0.986592 | 2.643779e-167 | -8.615850e-47 |
| Msa0896920 | Msa1436540 | 0.816825 | 4.529734e-52 | -8.615850e-47 |
| Msa0896950 | Msa1436540 | 0.801223 | 9.964771e-49 | -8.615850e-47 |
| Msa0913550 | Msa1436540 | 0.803037 | 4.221170e-49 | -8.615850e-47 |
| Msa0947520 | Msa1436540 | 0.802173 | 6.362143e-49 | -8.615850e-47 |
| Msa0951150 | Msa1436540 | 0.800075 | 1.708269e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436540 | MtrunA17_Chr4g0068121 | 94.149 | 376 | 22 | 0 | 1 | 376 | 1 | 376 | 0.0 | 741 |
| Msa1436540 | MtrunA17_Chr4g0036961 | 82.713 | 376 | 65 | 0 | 1 | 376 | 1 | 376 | 0.0 | 665 |
| Msa1436540 | MtrunA17_Chr4g0068141 | 81.915 | 376 | 68 | 0 | 1 | 376 | 1 | 376 | 0.0 | 657 |
| Msa1436540 | MtrunA17_Chr3g0134551 | 43.122 | 378 | 188 | 9 | 7 | 372 | 28 | 390 | 2.26e-98 | 297 |
| Msa1436540 | MtrunA17_Chr3g0134571 | 43.700 | 373 | 192 | 9 | 7 | 372 | 17 | 378 | 1.06e-97 | 295 |
| Msa1436540 | MtrunA17_Chr3g0082001 | 42.593 | 378 | 190 | 9 | 7 | 372 | 28 | 390 | 4.16e-97 | 294 |
| Msa1436540 | MtrunA17_Chr3g0134561 | 42.318 | 371 | 201 | 9 | 7 | 372 | 28 | 390 | 1.66e-96 | 293 |
| Msa1436540 | MtrunA17_Chr1g0152811 | 41.192 | 369 | 207 | 7 | 7 | 372 | 64 | 425 | 3.80e-92 | 283 |
| Msa1436540 | MtrunA17_Chr1g0152831 | 40.909 | 374 | 209 | 8 | 7 | 376 | 62 | 427 | 1.50e-89 | 278 |
| Msa1436540 | MtrunA17_Chr3g0104611 | 36.126 | 382 | 222 | 12 | 2 | 372 | 7 | 377 | 2.48e-64 | 209 |
| Msa1436540 | MtrunA17_Chr1g0152791 | 39.796 | 196 | 117 | 1 | 177 | 372 | 13 | 207 | 2.62e-48 | 162 |
| Msa1436540 | MtrunA17_Chr1g0152801 | 39.516 | 124 | 69 | 5 | 48 | 171 | 11 | 128 | 5.25e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436540 | AT4G24220.1 | 42.742 | 372 | 196 | 8 | 7 | 372 | 28 | 388 | 1.22e-96 | 293 |
| Msa1436540 | AT4G24220.2 | 42.742 | 372 | 196 | 8 | 7 | 372 | 27 | 387 | 1.43e-96 | 293 |
| Msa1436540 | AT5G58750.2 | 31.937 | 382 | 240 | 11 | 2 | 372 | 5 | 377 | 2.63e-57 | 191 |
| Msa1436540 | AT5G58750.1 | 31.937 | 382 | 240 | 11 | 2 | 372 | 13 | 385 | 2.83e-57 | 191 |
Find 112 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTGTGTAGTAGAAATT+TGG | 0.187702 | tig0027944:-11700 | None:intergenic |
| ACGAAGTCACCCACCTCTTC+TGG | 0.205721 | tig0027944:+11449 | Msa1436540:CDS |
| TTCCGGTTTGGACCGTTATA+TGG | 0.216248 | tig0027944:-11579 | None:intergenic |
| GAGAAGATGGGGAAGATTTA+AGG | 0.233393 | tig0027944:-11549 | None:intergenic |
| ATGAATAAGAGTAAAGATTA+TGG | 0.264309 | tig0027944:+12237 | Msa1436540:CDS |
| CATCGATCCTCTCTCATAAT+AGG | 0.305949 | tig0027944:+11766 | Msa1436540:CDS |
| CGAGGCATATTCTCGTTAAA+AGG | 0.353149 | tig0027944:-11667 | None:intergenic |
| TCCCAAGTGTATCTATTTCC+TGG | 0.357073 | tig0027944:-11877 | None:intergenic |
| GGAGGCCCATGGAAAGTTTA+CGG | 0.374373 | tig0027944:+11313 | Msa1436540:CDS |
| AGCACTAGTTGTCGGAGTTA+CGG | 0.384801 | tig0027944:+11240 | Msa1436540:CDS |
| GACTTGATTGTAGAGAAATA+TGG | 0.385064 | tig0027944:+12129 | Msa1436540:CDS |
| ACCAGGTTGCTTCAAGGCTT+CGG | 0.385491 | tig0027944:-11284 | None:intergenic |
| CTTCTTCATCAGCTACAAAC+TGG | 0.386111 | tig0027944:-11480 | None:intergenic |
| TGAATAAGAGTAAAGATTAT+GGG | 0.394383 | tig0027944:+12238 | Msa1436540:CDS |
| GCACTAGTTGTCGGAGTTAC+GGG | 0.398289 | tig0027944:+11241 | Msa1436540:CDS |
| ACCCATGTAATGTTTAGTTC+CGG | 0.399374 | tig0027944:-11596 | None:intergenic |
| GCGTGACAAGGGTGAGGTTT+GGG | 0.400025 | tig0027944:+12107 | Msa1436540:CDS |
| TCCGGTTTGGACCGTTATAT+GGG | 0.403019 | tig0027944:-11578 | None:intergenic |
| GTTGGCTATAGGTAATAGTT+TGG | 0.406552 | tig0027944:-11428 | None:intergenic |
| GCCATGTAGGGTTACCGTTT+CGG | 0.412038 | tig0027944:+11851 | Msa1436540:CDS |
| TGTAATGTTTAGTTCCGGTT+TGG | 0.414990 | tig0027944:-11591 | None:intergenic |
| CGAAGTCACCCACCTCTTCT+GGG | 0.426334 | tig0027944:+11450 | Msa1436540:CDS |
| GGTAATGAAGCCGTCTAAGA+TGG | 0.426533 | tig0027944:-11374 | None:intergenic |
| AATTAATTAGTGTTGGTAAG+AGG | 0.426916 | tig0027944:-12334 | None:intergenic |
| GAGGAGCATGGATTTGTTAA+CGG | 0.429249 | tig0027944:-11512 | None:intergenic |
| TGATGTTGAGTTTGTTGAGT+TGG | 0.436865 | tig0027944:+12050 | Msa1436540:CDS |
| ATTAATTAGTGTTGGTAAGA+GGG | 0.438431 | tig0027944:-12333 | None:intergenic |
| CGTTTGTACAATTAAATGCT+TGG | 0.439544 | tig0027944:-11978 | None:intergenic |
| CTGCCATATGTCGCCATGTA+GGG | 0.443099 | tig0027944:+11839 | Msa1436540:CDS |
| GTCGGAGTTACGGGAATGGT+TGG | 0.453006 | tig0027944:+11250 | Msa1436540:CDS |
| TGAAACTCAAACCGTACAAC+TGG | 0.454291 | tig0027944:-12201 | None:intergenic |
| GCACAACCGTAAACTTTCCA+TGG | 0.455899 | tig0027944:-11319 | None:intergenic |
| GTGTAGTAGAAATTTGGGTA+AGG | 0.457400 | tig0027944:-11694 | None:intergenic |
| GCCCATATAACGGTCCAAAC+CGG | 0.457826 | tig0027944:+11577 | Msa1436540:CDS |
| CAAGTGTGTAGTAGAAATTT+GGG | 0.457986 | tig0027944:-11699 | None:intergenic |
| AACCGGAACTAAACATTACA+TGG | 0.459743 | tig0027944:+11594 | Msa1436540:CDS |
| TGCGTGACAAGGGTGAGGTT+TGG | 0.467326 | tig0027944:+12106 | Msa1436540:CDS |
| GACCGGACCGGGTCATATAT+CGG | 0.467396 | tig0027944:-11619 | None:intergenic |
| GAGACAACCAGGTTGCTTCA+AGG | 0.467882 | tig0027944:-11290 | None:intergenic |
| GCAAGCAATTTCCGTCAACT+TGG | 0.472649 | tig0027944:-12163 | None:intergenic |
| CAAGCATTTAATTGTACAAA+CGG | 0.475328 | tig0027944:+11979 | Msa1436540:CDS |
| TTCCCTTCTTCCATCTTAGA+CGG | 0.478293 | tig0027944:+11364 | Msa1436540:CDS |
| TCGGAGTTACGGGAATGGTT+GGG | 0.485596 | tig0027944:+11251 | Msa1436540:CDS |
| TAACCCTACATGGCGACATA+TGG | 0.494040 | tig0027944:-11842 | None:intergenic |
| TATGGGCGAGAGGAGAAGAT+GGG | 0.499172 | tig0027944:-11561 | None:intergenic |
| GTGGTTCGTGACATATAAGT+TGG | 0.499435 | tig0027944:-11645 | None:intergenic |
| CCCAAGTGTATCTATTTCCT+GGG | 0.500577 | tig0027944:-11876 | None:intergenic |
| TGTAGTAGAAATTTGGGTAA+GGG | 0.502896 | tig0027944:-11693 | None:intergenic |
| GTTTAAGAGTATCAAACGTT+GGG | 0.508284 | tig0027944:+12281 | Msa1436540:CDS |
| TTCTCCTCTCGCCCATATAA+CGG | 0.509282 | tig0027944:+11567 | Msa1436540:CDS |
| ATATGGGCGAGAGGAGAAGA+TGG | 0.509916 | tig0027944:-11562 | None:intergenic |
| AAGCCATGGTGCCAGTTGTA+CGG | 0.510935 | tig0027944:+12190 | Msa1436540:CDS |
| AGCTGAGTCAACTGCGTCAA+AGG | 0.511856 | tig0027944:-11395 | None:intergenic |
| AAGCCGTCTAAGATGGAAGA+AGG | 0.513241 | tig0027944:-11367 | None:intergenic |
| TTGAAGCAACCTGGTTGTCT+CGG | 0.517681 | tig0027944:+11292 | Msa1436540:CDS |
| AATTGCTTGCTTTGAAGCCA+TGG | 0.522227 | tig0027944:+12176 | Msa1436540:CDS |
| CATGGGCCTCCGAGACAACC+AGG | 0.527468 | tig0027944:-11301 | None:intergenic |
| CTATTTCCTGGGTACCGAAA+CGG | 0.528475 | tig0027944:-11865 | None:intergenic |
| GATATGCAATTAATTAGTGT+TGG | 0.536955 | tig0027944:-12341 | None:intergenic |
| CTGGTTGTCTCGGAGGCCCA+TGG | 0.539980 | tig0027944:+11302 | Msa1436540:CDS |
| GAAGAAGGGAACCAGCCCAT+GGG | 0.542654 | tig0027944:-11352 | None:intergenic |
| GGAAGAAGGGAACCAGCCCA+TGG | 0.542761 | tig0027944:-11353 | None:intergenic |
| GACATATAAGTTGGTTAGAC+CGG | 0.544206 | tig0027944:-11636 | None:intergenic |
| GCCGAAGCCTTGAAGCAACC+TGG | 0.546766 | tig0027944:+11283 | Msa1436540:CDS |
| CGTTTAAGAGTATCAAACGT+TGG | 0.546920 | tig0027944:+12280 | Msa1436540:CDS |
| TGGGTGACTTCGTTGGCTAT+AGG | 0.552087 | tig0027944:-11439 | None:intergenic |
| ACCGAAACGGTAACCCTACA+TGG | 0.555455 | tig0027944:-11852 | None:intergenic |
| ATAAGTTGGTTAGACCGGAC+CGG | 0.564907 | tig0027944:-11631 | None:intergenic |
| GTTGCTTCAAGGCTTCGGCT+AGG | 0.565659 | tig0027944:-11279 | None:intergenic |
| AACGTTGGGTGGCTAAGCTG+AGG | 0.568432 | tig0027944:+12295 | Msa1436540:CDS |
| TAAGTTGGTTAGACCGGACC+GGG | 0.568935 | tig0027944:-11630 | None:intergenic |
| GGTGACAACGTTGAGGAGCA+TGG | 0.572548 | tig0027944:-11524 | None:intergenic |
| GTCCGATATATGACCCGGTC+CGG | 0.572844 | tig0027944:+11617 | Msa1436540:CDS |
| CATGGGTCCGATATATGACC+CGG | 0.576515 | tig0027944:+11612 | Msa1436540:CDS |
| GAAGATGGAGCATCAAAGTC+CGG | 0.577025 | tig0027944:+11216 | None:intergenic |
| GGGTTACCGTTTCGGTACCC+AGG | 0.577350 | tig0027944:+11859 | Msa1436540:CDS |
| TATGTCAGATGCAGATGTGC+TGG | 0.581656 | tig0027944:+11912 | Msa1436540:CDS |
| ACCCAGGAAATAGATACACT+TGG | 0.581714 | tig0027944:+11875 | Msa1436540:CDS |
| ATGGGCGAGAGGAGAAGATG+GGG | 0.583776 | tig0027944:-11560 | None:intergenic |
| GGAACGTCACCCAGAAGAGG+TGG | 0.588892 | tig0027944:-11459 | None:intergenic |
| AGTCCGGTAGCACTAGTTGT+CGG | 0.589052 | tig0027944:+11232 | Msa1436540:CDS |
| TAAGAGTATCAAACGTTGGG+TGG | 0.589772 | tig0027944:+12284 | Msa1436540:CDS |
| ACTTCATAAGACCAAGTTGA+CGG | 0.590122 | tig0027944:+12152 | Msa1436540:CDS |
| ACTCCGACAACTAGTGCTAC+CGG | 0.590861 | tig0027944:-11235 | None:intergenic |
| AAATTTCTACTACACACTTG+AGG | 0.594291 | tig0027944:+11702 | Msa1436540:CDS |
| AGTTGTCGGAGTTACGGGAA+TGG | 0.598013 | tig0027944:+11246 | Msa1436540:CDS |
| GAAGAGGTGGGTGACTTCGT+TGG | 0.599842 | tig0027944:-11446 | None:intergenic |
| GTTGATGCGTGACAAGGGTG+AGG | 0.600978 | tig0027944:+12101 | Msa1436540:CDS |
| CACAACCGTAAACTTTCCAT+GGG | 0.604149 | tig0027944:-11318 | None:intergenic |
| AGATGGGGAAGATTTAAGGA+CGG | 0.605788 | tig0027944:-11545 | None:intergenic |
| TGTATTGAGTATGTTATCGA+AGG | 0.607676 | tig0027944:-11745 | None:intergenic |
| AAGCAACCTGGTTGTCTCGG+AGG | 0.615645 | tig0027944:+11295 | Msa1436540:CDS |
| CGTTGAGTTGATGCGTGACA+AGG | 0.616253 | tig0027944:+12095 | Msa1436540:CDS |
| GGCATATTCTCGTTAAAAGG+TGG | 0.617142 | tig0027944:-11664 | None:intergenic |
| AAGAAGGGAACCAGCCCATG+GGG | 0.620178 | tig0027944:-11351 | None:intergenic |
| ACGTTGGGTGGCTAAGCTGA+GGG | 0.622480 | tig0027944:+12296 | Msa1436540:CDS |
| AAATTTGGGTAAGGGAGTCG+AGG | 0.633911 | tig0027944:-11685 | None:intergenic |
| CCCAGGAAATAGATACACTT+GGG | 0.634173 | tig0027944:+11876 | Msa1436540:CDS |
| ACTGGAACGTCACCCAGAAG+AGG | 0.637414 | tig0027944:-11462 | None:intergenic |
| GCTGCCATATGTCGCCATGT+AGG | 0.637754 | tig0027944:+11838 | Msa1436540:CDS |
| TAAGGACGGTGACAACGTTG+AGG | 0.640341 | tig0027944:-11531 | None:intergenic |
| AAACCGTACAACTGGCACCA+TGG | 0.641744 | tig0027944:-12193 | None:intergenic |
| TGGACCGTTATATGGGCGAG+AGG | 0.642068 | tig0027944:-11571 | None:intergenic |
| AAAGCAACATGTGTGGGCTG+CGG | 0.643605 | tig0027944:+11936 | Msa1436540:CDS |
| AGACGCACCTATTATGAGAG+AGG | 0.645667 | tig0027944:-11773 | None:intergenic |
| ACCGGAACTAAACATTACAT+GGG | 0.656595 | tig0027944:+11595 | Msa1436540:CDS |
| AGCCGTCTAAGATGGAAGAA+GGG | 0.658137 | tig0027944:-11366 | None:intergenic |
| GCTGGCAAAGCAACATGTGT+GGG | 0.665071 | tig0027944:+11930 | Msa1436540:CDS |
| GTTGAGTTGATGCGTGACAA+GGG | 0.676462 | tig0027944:+12096 | Msa1436540:CDS |
| TGCTGGCAAAGCAACATGTG+TGG | 0.677132 | tig0027944:+11929 | Msa1436540:CDS |
| GAACGTCACCCAGAAGAGGT+GGG | 0.689273 | tig0027944:-11458 | None:intergenic |
| AGAAGGGAACCAGCCCATGG+GGG | 0.712890 | tig0027944:-11350 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATAAGAGTAAAGATTA+TGG | + | tig0027944:12237-12256 | Msa1436540:CDS | 20.0% |
| !! | TGAATAAGAGTAAAGATTAT+GGG | + | tig0027944:12238-12257 | Msa1436540:CDS | 20.0% |
| !! | ATGAATAAGAGTAAAGATTA+TGG | + | tig0027944:12237-12256 | Msa1436540:CDS | 20.0% |
| !! | TGAATAAGAGTAAAGATTAT+GGG | + | tig0027944:12238-12257 | Msa1436540:CDS | 20.0% |
| ! | CAAGCATTTAATTGTACAAA+CGG | + | tig0027944:11979-11998 | Msa1436540:CDS | 25.0% |
| ! | CAAGCATTTAATTGTACAAA+CGG | + | tig0027944:11979-11998 | Msa1436540:CDS | 25.0% |
| TGTAGTAGAAATTTGGGTAA+GGG | - | tig0027944:11696-11715 | None:intergenic | 30.0% | |
| CAAGTGTGTAGTAGAAATTT+GGG | - | tig0027944:11702-11721 | None:intergenic | 30.0% | |
| TCAAGTGTGTAGTAGAAATT+TGG | - | tig0027944:11703-11722 | None:intergenic | 30.0% | |
| AAATTTCTACTACACACTTG+AGG | + | tig0027944:11702-11721 | Msa1436540:CDS | 30.0% | |
| TGTATTGAGTATGTTATCGA+AGG | - | tig0027944:11748-11767 | None:intergenic | 30.0% | |
| CGTTTGTACAATTAAATGCT+TGG | - | tig0027944:11981-12000 | None:intergenic | 30.0% | |
| GACTTGATTGTAGAGAAATA+TGG | + | tig0027944:12129-12148 | Msa1436540:CDS | 30.0% | |
| !! | GTTTAAGAGTATCAAACGTT+GGG | + | tig0027944:12281-12300 | Msa1436540:CDS | 30.0% |
| TGTAGTAGAAATTTGGGTAA+GGG | - | tig0027944:11696-11715 | None:intergenic | 30.0% | |
| CAAGTGTGTAGTAGAAATTT+GGG | - | tig0027944:11702-11721 | None:intergenic | 30.0% | |
| TCAAGTGTGTAGTAGAAATT+TGG | - | tig0027944:11703-11722 | None:intergenic | 30.0% | |
| AAATTTCTACTACACACTTG+AGG | + | tig0027944:11702-11721 | Msa1436540:CDS | 30.0% | |
| TGTATTGAGTATGTTATCGA+AGG | - | tig0027944:11748-11767 | None:intergenic | 30.0% | |
| CGTTTGTACAATTAAATGCT+TGG | - | tig0027944:11981-12000 | None:intergenic | 30.0% | |
| GACTTGATTGTAGAGAAATA+TGG | + | tig0027944:12129-12148 | Msa1436540:CDS | 30.0% | |
| !! | GTTTAAGAGTATCAAACGTT+GGG | + | tig0027944:12281-12300 | Msa1436540:CDS | 30.0% |
| GTTGGCTATAGGTAATAGTT+TGG | - | tig0027944:11431-11450 | None:intergenic | 35.0% | |
| ! | TGTAATGTTTAGTTCCGGTT+TGG | - | tig0027944:11594-11613 | None:intergenic | 35.0% |
| AACCGGAACTAAACATTACA+TGG | + | tig0027944:11594-11613 | Msa1436540:CDS | 35.0% | |
| ACCGGAACTAAACATTACAT+GGG | + | tig0027944:11595-11614 | Msa1436540:CDS | 35.0% | |
| ! | ACCCATGTAATGTTTAGTTC+CGG | - | tig0027944:11599-11618 | None:intergenic | 35.0% |
| !! | GACATATAAGTTGGTTAGAC+CGG | - | tig0027944:11639-11658 | None:intergenic | 35.0% |
| GTGTAGTAGAAATTTGGGTA+AGG | - | tig0027944:11697-11716 | None:intergenic | 35.0% | |
| !! | TTTTCACTTGGAAGAGTATG+TGG | + | tig0027944:12007-12026 | Msa1436540:CDS | 35.0% |
| !! | TGATGTTGAGTTTGTTGAGT+TGG | + | tig0027944:12050-12069 | Msa1436540:CDS | 35.0% |
| ! | ACTTCATAAGACCAAGTTGA+CGG | + | tig0027944:12152-12171 | Msa1436540:CDS | 35.0% |
| !!! | TATGGGTTTTTTGAGTATGC+TGG | + | tig0027944:12255-12274 | Msa1436540:CDS | 35.0% |
| !! | CGTTTAAGAGTATCAAACGT+TGG | + | tig0027944:12280-12299 | Msa1436540:CDS | 35.0% |
| GTTGGCTATAGGTAATAGTT+TGG | - | tig0027944:11431-11450 | None:intergenic | 35.0% | |
| ! | TGTAATGTTTAGTTCCGGTT+TGG | - | tig0027944:11594-11613 | None:intergenic | 35.0% |
| AACCGGAACTAAACATTACA+TGG | + | tig0027944:11594-11613 | Msa1436540:CDS | 35.0% | |
| ACCGGAACTAAACATTACAT+GGG | + | tig0027944:11595-11614 | Msa1436540:CDS | 35.0% | |
| ! | ACCCATGTAATGTTTAGTTC+CGG | - | tig0027944:11599-11618 | None:intergenic | 35.0% |
| !! | GACATATAAGTTGGTTAGAC+CGG | - | tig0027944:11639-11658 | None:intergenic | 35.0% |
| GTGTAGTAGAAATTTGGGTA+AGG | - | tig0027944:11697-11716 | None:intergenic | 35.0% | |
| !! | TTTTCACTTGGAAGAGTATG+TGG | + | tig0027944:12007-12026 | Msa1436540:CDS | 35.0% |
| !! | TGATGTTGAGTTTGTTGAGT+TGG | + | tig0027944:12050-12069 | Msa1436540:CDS | 35.0% |
| ! | ACTTCATAAGACCAAGTTGA+CGG | + | tig0027944:12152-12171 | Msa1436540:CDS | 35.0% |
| !!! | TATGGGTTTTTTGAGTATGC+TGG | + | tig0027944:12255-12274 | Msa1436540:CDS | 35.0% |
| !! | CGTTTAAGAGTATCAAACGT+TGG | + | tig0027944:12280-12299 | Msa1436540:CDS | 35.0% |
| CACAACCGTAAACTTTCCAT+GGG | - | tig0027944:11321-11340 | None:intergenic | 40.0% | |
| TTCCCTTCTTCCATCTTAGA+CGG | + | tig0027944:11364-11383 | Msa1436540:CDS | 40.0% | |
| CTTCTTCATCAGCTACAAAC+TGG | - | tig0027944:11483-11502 | None:intergenic | 40.0% | |
| !! | GAGGAGCATGGATTTGTTAA+CGG | - | tig0027944:11515-11534 | None:intergenic | 40.0% |
| AGATGGGGAAGATTTAAGGA+CGG | - | tig0027944:11548-11567 | None:intergenic | 40.0% | |
| GAGAAGATGGGGAAGATTTA+AGG | - | tig0027944:11552-11571 | None:intergenic | 40.0% | |
| GTGGTTCGTGACATATAAGT+TGG | - | tig0027944:11648-11667 | None:intergenic | 40.0% | |
| GGCATATTCTCGTTAAAAGG+TGG | - | tig0027944:11667-11686 | None:intergenic | 40.0% | |
| CGAGGCATATTCTCGTTAAA+AGG | - | tig0027944:11670-11689 | None:intergenic | 40.0% | |
| CATCGATCCTCTCTCATAAT+AGG | + | tig0027944:11766-11785 | Msa1436540:CDS | 40.0% | |
| ACCCAGGAAATAGATACACT+TGG | + | tig0027944:11875-11894 | Msa1436540:CDS | 40.0% | |
| CCCAAGTGTATCTATTTCCT+GGG | - | tig0027944:11879-11898 | None:intergenic | 40.0% | |
| CCCAGGAAATAGATACACTT+GGG | + | tig0027944:11876-11895 | Msa1436540:CDS | 40.0% | |
| TCCCAAGTGTATCTATTTCC+TGG | - | tig0027944:11880-11899 | None:intergenic | 40.0% | |
| !! | AATTGCTTGCTTTGAAGCCA+TGG | + | tig0027944:12176-12195 | Msa1436540:CDS | 40.0% |
| TGAAACTCAAACCGTACAAC+TGG | - | tig0027944:12204-12223 | None:intergenic | 40.0% | |
| !! | TAAGAGTATCAAACGTTGGG+TGG | + | tig0027944:12284-12303 | Msa1436540:CDS | 40.0% |
| CACAACCGTAAACTTTCCAT+GGG | - | tig0027944:11321-11340 | None:intergenic | 40.0% | |
| TTCCCTTCTTCCATCTTAGA+CGG | + | tig0027944:11364-11383 | Msa1436540:CDS | 40.0% | |
| CTTCTTCATCAGCTACAAAC+TGG | - | tig0027944:11483-11502 | None:intergenic | 40.0% | |
| !! | GAGGAGCATGGATTTGTTAA+CGG | - | tig0027944:11515-11534 | None:intergenic | 40.0% |
| AGATGGGGAAGATTTAAGGA+CGG | - | tig0027944:11548-11567 | None:intergenic | 40.0% | |
| GAGAAGATGGGGAAGATTTA+AGG | - | tig0027944:11552-11571 | None:intergenic | 40.0% | |
| GTGGTTCGTGACATATAAGT+TGG | - | tig0027944:11648-11667 | None:intergenic | 40.0% | |
| GGCATATTCTCGTTAAAAGG+TGG | - | tig0027944:11667-11686 | None:intergenic | 40.0% | |
| CGAGGCATATTCTCGTTAAA+AGG | - | tig0027944:11670-11689 | None:intergenic | 40.0% | |
| CATCGATCCTCTCTCATAAT+AGG | + | tig0027944:11766-11785 | Msa1436540:CDS | 40.0% | |
| ACCCAGGAAATAGATACACT+TGG | + | tig0027944:11875-11894 | Msa1436540:CDS | 40.0% | |
| CCCAAGTGTATCTATTTCCT+GGG | - | tig0027944:11879-11898 | None:intergenic | 40.0% | |
| CCCAGGAAATAGATACACTT+GGG | + | tig0027944:11876-11895 | Msa1436540:CDS | 40.0% | |
| TCCCAAGTGTATCTATTTCC+TGG | - | tig0027944:11880-11899 | None:intergenic | 40.0% | |
| !! | AATTGCTTGCTTTGAAGCCA+TGG | + | tig0027944:12176-12195 | Msa1436540:CDS | 40.0% |
| TGAAACTCAAACCGTACAAC+TGG | - | tig0027944:12204-12223 | None:intergenic | 40.0% | |
| !! | TAAGAGTATCAAACGTTGGG+TGG | + | tig0027944:12284-12303 | Msa1436540:CDS | 40.0% |
| AGCACTAGTTGTCGGAGTTA+CGG | + | tig0027944:11240-11259 | Msa1436540:CDS | 45.0% | |
| TTGAAGCAACCTGGTTGTCT+CGG | + | tig0027944:11292-11311 | Msa1436540:CDS | 45.0% | |
| GCACAACCGTAAACTTTCCA+TGG | - | tig0027944:11322-11341 | None:intergenic | 45.0% | |
| ! | AGCCGTCTAAGATGGAAGAA+GGG | - | tig0027944:11369-11388 | None:intergenic | 45.0% |
| ! | AAGCCGTCTAAGATGGAAGA+AGG | - | tig0027944:11370-11389 | None:intergenic | 45.0% |
| GGTAATGAAGCCGTCTAAGA+TGG | - | tig0027944:11377-11396 | None:intergenic | 45.0% | |
| TTCTCCTCTCGCCCATATAA+CGG | + | tig0027944:11567-11586 | Msa1436540:CDS | 45.0% | |
| !! | TCCGGTTTGGACCGTTATAT+GGG | - | tig0027944:11581-11600 | None:intergenic | 45.0% |
| !! | TTCCGGTTTGGACCGTTATA+TGG | - | tig0027944:11582-11601 | None:intergenic | 45.0% |
| !! | ATAAGTTGGTTAGACCGGAC+CGG | - | tig0027944:11634-11653 | None:intergenic | 45.0% |
| AAATTTGGGTAAGGGAGTCG+AGG | - | tig0027944:11688-11707 | None:intergenic | 45.0% | |
| AGACGCACCTATTATGAGAG+AGG | - | tig0027944:11776-11795 | None:intergenic | 45.0% | |
| TAACCCTACATGGCGACATA+TGG | - | tig0027944:11845-11864 | None:intergenic | 45.0% | |
| !! | CTATTTCCTGGGTACCGAAA+CGG | - | tig0027944:11868-11887 | None:intergenic | 45.0% |
| TATGTCAGATGCAGATGTGC+TGG | + | tig0027944:11912-11931 | Msa1436540:CDS | 45.0% | |
| ! | CAAACGGCGACATTTTCACT+TGG | + | tig0027944:11995-12014 | Msa1436540:CDS | 45.0% |
| !! | GTTGAGTTGATGCGTGACAA+GGG | + | tig0027944:12096-12115 | Msa1436540:CDS | 45.0% |
| GCAAGCAATTTCCGTCAACT+TGG | - | tig0027944:12166-12185 | None:intergenic | 45.0% | |
| AGCACTAGTTGTCGGAGTTA+CGG | + | tig0027944:11240-11259 | Msa1436540:CDS | 45.0% | |
| TTGAAGCAACCTGGTTGTCT+CGG | + | tig0027944:11292-11311 | Msa1436540:CDS | 45.0% | |
| GCACAACCGTAAACTTTCCA+TGG | - | tig0027944:11322-11341 | None:intergenic | 45.0% | |
| ! | AGCCGTCTAAGATGGAAGAA+GGG | - | tig0027944:11369-11388 | None:intergenic | 45.0% |
| ! | AAGCCGTCTAAGATGGAAGA+AGG | - | tig0027944:11370-11389 | None:intergenic | 45.0% |
| GGTAATGAAGCCGTCTAAGA+TGG | - | tig0027944:11377-11396 | None:intergenic | 45.0% | |
| TTCTCCTCTCGCCCATATAA+CGG | + | tig0027944:11567-11586 | Msa1436540:CDS | 45.0% | |
| !! | TCCGGTTTGGACCGTTATAT+GGG | - | tig0027944:11581-11600 | None:intergenic | 45.0% |
| !! | TTCCGGTTTGGACCGTTATA+TGG | - | tig0027944:11582-11601 | None:intergenic | 45.0% |
| !! | ATAAGTTGGTTAGACCGGAC+CGG | - | tig0027944:11634-11653 | None:intergenic | 45.0% |
| AAATTTGGGTAAGGGAGTCG+AGG | - | tig0027944:11688-11707 | None:intergenic | 45.0% | |
| AGACGCACCTATTATGAGAG+AGG | - | tig0027944:11776-11795 | None:intergenic | 45.0% | |
| TAACCCTACATGGCGACATA+TGG | - | tig0027944:11845-11864 | None:intergenic | 45.0% | |
| !! | CTATTTCCTGGGTACCGAAA+CGG | - | tig0027944:11868-11887 | None:intergenic | 45.0% |
| TATGTCAGATGCAGATGTGC+TGG | + | tig0027944:11912-11931 | Msa1436540:CDS | 45.0% | |
| ! | CAAACGGCGACATTTTCACT+TGG | + | tig0027944:11995-12014 | Msa1436540:CDS | 45.0% |
| !! | GTTGAGTTGATGCGTGACAA+GGG | + | tig0027944:12096-12115 | Msa1436540:CDS | 45.0% |
| GCAAGCAATTTCCGTCAACT+TGG | - | tig0027944:12166-12185 | None:intergenic | 45.0% | |
| AGTCCGGTAGCACTAGTTGT+CGG | + | tig0027944:11232-11251 | Msa1436540:CDS | 50.0% | |
| ACTCCGACAACTAGTGCTAC+CGG | - | tig0027944:11238-11257 | None:intergenic | 50.0% | |
| GCACTAGTTGTCGGAGTTAC+GGG | + | tig0027944:11241-11260 | Msa1436540:CDS | 50.0% | |
| AGTTGTCGGAGTTACGGGAA+TGG | + | tig0027944:11246-11265 | Msa1436540:CDS | 50.0% | |
| TCGGAGTTACGGGAATGGTT+GGG | + | tig0027944:11251-11270 | Msa1436540:CDS | 50.0% | |
| ACCAGGTTGCTTCAAGGCTT+CGG | - | tig0027944:11287-11306 | None:intergenic | 50.0% | |
| GAGACAACCAGGTTGCTTCA+AGG | - | tig0027944:11293-11312 | None:intergenic | 50.0% | |
| GGAGGCCCATGGAAAGTTTA+CGG | + | tig0027944:11313-11332 | Msa1436540:CDS | 50.0% | |
| AGCTGAGTCAACTGCGTCAA+AGG | - | tig0027944:11398-11417 | None:intergenic | 50.0% | |
| ! | TGGGTGACTTCGTTGGCTAT+AGG | - | tig0027944:11442-11461 | None:intergenic | 50.0% |
| TAAGGACGGTGACAACGTTG+AGG | - | tig0027944:11534-11553 | None:intergenic | 50.0% | |
| TATGGGCGAGAGGAGAAGAT+GGG | - | tig0027944:11564-11583 | None:intergenic | 50.0% | |
| ATATGGGCGAGAGGAGAAGA+TGG | - | tig0027944:11565-11584 | None:intergenic | 50.0% | |
| GCCCATATAACGGTCCAAAC+CGG | + | tig0027944:11577-11596 | Msa1436540:CDS | 50.0% | |
| CATGGGTCCGATATATGACC+CGG | + | tig0027944:11612-11631 | Msa1436540:CDS | 50.0% | |
| !! | TAAGTTGGTTAGACCGGACC+GGG | - | tig0027944:11633-11652 | None:intergenic | 50.0% |
| CTGCCATATGTCGCCATGTA+GGG | + | tig0027944:11839-11858 | Msa1436540:CDS | 50.0% | |
| GCCATGTAGGGTTACCGTTT+CGG | + | tig0027944:11851-11870 | Msa1436540:CDS | 50.0% | |
| ACCGAAACGGTAACCCTACA+TGG | - | tig0027944:11855-11874 | None:intergenic | 50.0% | |
| TGCTGGCAAAGCAACATGTG+TGG | + | tig0027944:11929-11948 | Msa1436540:CDS | 50.0% | |
| GCTGGCAAAGCAACATGTGT+GGG | + | tig0027944:11930-11949 | Msa1436540:CDS | 50.0% | |
| ! | AAAGCAACATGTGTGGGCTG+CGG | + | tig0027944:11936-11955 | Msa1436540:CDS | 50.0% |
| !! | CGTTGAGTTGATGCGTGACA+AGG | + | tig0027944:12095-12114 | Msa1436540:CDS | 50.0% |
| ! | AAGCCATGGTGCCAGTTGTA+CGG | + | tig0027944:12190-12209 | Msa1436540:CDS | 50.0% |
| AAACCGTACAACTGGCACCA+TGG | - | tig0027944:12196-12215 | None:intergenic | 50.0% | |
| AGTCCGGTAGCACTAGTTGT+CGG | + | tig0027944:11232-11251 | Msa1436540:CDS | 50.0% | |
| ACTCCGACAACTAGTGCTAC+CGG | - | tig0027944:11238-11257 | None:intergenic | 50.0% | |
| GCACTAGTTGTCGGAGTTAC+GGG | + | tig0027944:11241-11260 | Msa1436540:CDS | 50.0% | |
| AGTTGTCGGAGTTACGGGAA+TGG | + | tig0027944:11246-11265 | Msa1436540:CDS | 50.0% | |
| TCGGAGTTACGGGAATGGTT+GGG | + | tig0027944:11251-11270 | Msa1436540:CDS | 50.0% | |
| ACCAGGTTGCTTCAAGGCTT+CGG | - | tig0027944:11287-11306 | None:intergenic | 50.0% | |
| GAGACAACCAGGTTGCTTCA+AGG | - | tig0027944:11293-11312 | None:intergenic | 50.0% | |
| GGAGGCCCATGGAAAGTTTA+CGG | + | tig0027944:11313-11332 | Msa1436540:CDS | 50.0% | |
| AGCTGAGTCAACTGCGTCAA+AGG | - | tig0027944:11398-11417 | None:intergenic | 50.0% | |
| ! | TGGGTGACTTCGTTGGCTAT+AGG | - | tig0027944:11442-11461 | None:intergenic | 50.0% |
| TAAGGACGGTGACAACGTTG+AGG | - | tig0027944:11534-11553 | None:intergenic | 50.0% | |
| TATGGGCGAGAGGAGAAGAT+GGG | - | tig0027944:11564-11583 | None:intergenic | 50.0% | |
| ATATGGGCGAGAGGAGAAGA+TGG | - | tig0027944:11565-11584 | None:intergenic | 50.0% | |
| GCCCATATAACGGTCCAAAC+CGG | + | tig0027944:11577-11596 | Msa1436540:CDS | 50.0% | |
| CATGGGTCCGATATATGACC+CGG | + | tig0027944:11612-11631 | Msa1436540:CDS | 50.0% | |
| !! | TAAGTTGGTTAGACCGGACC+GGG | - | tig0027944:11633-11652 | None:intergenic | 50.0% |
| CTGCCATATGTCGCCATGTA+GGG | + | tig0027944:11839-11858 | Msa1436540:CDS | 50.0% | |
| GCCATGTAGGGTTACCGTTT+CGG | + | tig0027944:11851-11870 | Msa1436540:CDS | 50.0% | |
| ACCGAAACGGTAACCCTACA+TGG | - | tig0027944:11855-11874 | None:intergenic | 50.0% | |
| TGCTGGCAAAGCAACATGTG+TGG | + | tig0027944:11929-11948 | Msa1436540:CDS | 50.0% | |
| GCTGGCAAAGCAACATGTGT+GGG | + | tig0027944:11930-11949 | Msa1436540:CDS | 50.0% | |
| ! | AAAGCAACATGTGTGGGCTG+CGG | + | tig0027944:11936-11955 | Msa1436540:CDS | 50.0% |
| !! | CGTTGAGTTGATGCGTGACA+AGG | + | tig0027944:12095-12114 | Msa1436540:CDS | 50.0% |
| ! | AAGCCATGGTGCCAGTTGTA+CGG | + | tig0027944:12190-12209 | Msa1436540:CDS | 50.0% |
| AAACCGTACAACTGGCACCA+TGG | - | tig0027944:12196-12215 | None:intergenic | 50.0% | |
| GTCGGAGTTACGGGAATGGT+TGG | + | tig0027944:11250-11269 | Msa1436540:CDS | 55.0% | |
| GTTGCTTCAAGGCTTCGGCT+AGG | - | tig0027944:11282-11301 | None:intergenic | 55.0% | |
| AAGCAACCTGGTTGTCTCGG+AGG | + | tig0027944:11295-11314 | Msa1436540:CDS | 55.0% | |
| AAGAAGGGAACCAGCCCATG+GGG | - | tig0027944:11354-11373 | None:intergenic | 55.0% | |
| GAAGAAGGGAACCAGCCCAT+GGG | - | tig0027944:11355-11374 | None:intergenic | 55.0% | |
| GAAGAGGTGGGTGACTTCGT+TGG | - | tig0027944:11449-11468 | None:intergenic | 55.0% | |
| ACGAAGTCACCCACCTCTTC+TGG | + | tig0027944:11449-11468 | Msa1436540:CDS | 55.0% | |
| CGAAGTCACCCACCTCTTCT+GGG | + | tig0027944:11450-11469 | Msa1436540:CDS | 55.0% | |
| GAACGTCACCCAGAAGAGGT+GGG | - | tig0027944:11461-11480 | None:intergenic | 55.0% | |
| ACTGGAACGTCACCCAGAAG+AGG | - | tig0027944:11465-11484 | None:intergenic | 55.0% | |
| GGTGACAACGTTGAGGAGCA+TGG | - | tig0027944:11527-11546 | None:intergenic | 55.0% | |
| ATGGGCGAGAGGAGAAGATG+GGG | - | tig0027944:11563-11582 | None:intergenic | 55.0% | |
| TGGACCGTTATATGGGCGAG+AGG | - | tig0027944:11574-11593 | None:intergenic | 55.0% | |
| GTCCGATATATGACCCGGTC+CGG | + | tig0027944:11617-11636 | Msa1436540:CDS | 55.0% | |
| GACCGGACCGGGTCATATAT+CGG | - | tig0027944:11622-11641 | None:intergenic | 55.0% | |
| GCTGCCATATGTCGCCATGT+AGG | + | tig0027944:11838-11857 | Msa1436540:CDS | 55.0% | |
| GTTGATGCGTGACAAGGGTG+AGG | + | tig0027944:12101-12120 | Msa1436540:CDS | 55.0% | |
| TGCGTGACAAGGGTGAGGTT+TGG | + | tig0027944:12106-12125 | Msa1436540:CDS | 55.0% | |
| GCGTGACAAGGGTGAGGTTT+GGG | + | tig0027944:12107-12126 | Msa1436540:CDS | 55.0% | |
| AACGTTGGGTGGCTAAGCTG+AGG | + | tig0027944:12295-12314 | Msa1436540:CDS | 55.0% | |
| ACGTTGGGTGGCTAAGCTGA+GGG | + | tig0027944:12296-12315 | Msa1436540:CDS | 55.0% | |
| GTCGGAGTTACGGGAATGGT+TGG | + | tig0027944:11250-11269 | Msa1436540:CDS | 55.0% | |
| GTTGCTTCAAGGCTTCGGCT+AGG | - | tig0027944:11282-11301 | None:intergenic | 55.0% | |
| AAGCAACCTGGTTGTCTCGG+AGG | + | tig0027944:11295-11314 | Msa1436540:CDS | 55.0% | |
| AAGAAGGGAACCAGCCCATG+GGG | - | tig0027944:11354-11373 | None:intergenic | 55.0% | |
| GAAGAAGGGAACCAGCCCAT+GGG | - | tig0027944:11355-11374 | None:intergenic | 55.0% | |
| GAAGAGGTGGGTGACTTCGT+TGG | - | tig0027944:11449-11468 | None:intergenic | 55.0% | |
| ACGAAGTCACCCACCTCTTC+TGG | + | tig0027944:11449-11468 | Msa1436540:CDS | 55.0% | |
| CGAAGTCACCCACCTCTTCT+GGG | + | tig0027944:11450-11469 | Msa1436540:CDS | 55.0% | |
| GAACGTCACCCAGAAGAGGT+GGG | - | tig0027944:11461-11480 | None:intergenic | 55.0% | |
| ACTGGAACGTCACCCAGAAG+AGG | - | tig0027944:11465-11484 | None:intergenic | 55.0% | |
| GGTGACAACGTTGAGGAGCA+TGG | - | tig0027944:11527-11546 | None:intergenic | 55.0% | |
| ATGGGCGAGAGGAGAAGATG+GGG | - | tig0027944:11563-11582 | None:intergenic | 55.0% | |
| TGGACCGTTATATGGGCGAG+AGG | - | tig0027944:11574-11593 | None:intergenic | 55.0% | |
| GTCCGATATATGACCCGGTC+CGG | + | tig0027944:11617-11636 | Msa1436540:CDS | 55.0% | |
| GACCGGACCGGGTCATATAT+CGG | - | tig0027944:11622-11641 | None:intergenic | 55.0% | |
| GCTGCCATATGTCGCCATGT+AGG | + | tig0027944:11838-11857 | Msa1436540:CDS | 55.0% | |
| GTTGATGCGTGACAAGGGTG+AGG | + | tig0027944:12101-12120 | Msa1436540:CDS | 55.0% | |
| TGCGTGACAAGGGTGAGGTT+TGG | + | tig0027944:12106-12125 | Msa1436540:CDS | 55.0% | |
| GCGTGACAAGGGTGAGGTTT+GGG | + | tig0027944:12107-12126 | Msa1436540:CDS | 55.0% | |
| AACGTTGGGTGGCTAAGCTG+AGG | + | tig0027944:12295-12314 | Msa1436540:CDS | 55.0% | |
| ACGTTGGGTGGCTAAGCTGA+GGG | + | tig0027944:12296-12315 | Msa1436540:CDS | 55.0% | |
| GCCGAAGCCTTGAAGCAACC+TGG | + | tig0027944:11283-11302 | Msa1436540:CDS | 60.0% | |
| AGAAGGGAACCAGCCCATGG+GGG | - | tig0027944:11353-11372 | None:intergenic | 60.0% | |
| GGAAGAAGGGAACCAGCCCA+TGG | - | tig0027944:11356-11375 | None:intergenic | 60.0% | |
| GGAACGTCACCCAGAAGAGG+TGG | - | tig0027944:11462-11481 | None:intergenic | 60.0% | |
| GGGTTACCGTTTCGGTACCC+AGG | + | tig0027944:11859-11878 | Msa1436540:CDS | 60.0% | |
| GCCGAAGCCTTGAAGCAACC+TGG | + | tig0027944:11283-11302 | Msa1436540:CDS | 60.0% | |
| AGAAGGGAACCAGCCCATGG+GGG | - | tig0027944:11353-11372 | None:intergenic | 60.0% | |
| GGAAGAAGGGAACCAGCCCA+TGG | - | tig0027944:11356-11375 | None:intergenic | 60.0% | |
| GGAACGTCACCCAGAAGAGG+TGG | - | tig0027944:11462-11481 | None:intergenic | 60.0% | |
| GGGTTACCGTTTCGGTACCC+AGG | + | tig0027944:11859-11878 | Msa1436540:CDS | 60.0% | |
| CATGGGCCTCCGAGACAACC+AGG | - | tig0027944:11304-11323 | None:intergenic | 65.0% | |
| CTGGTTGTCTCGGAGGCCCA+TGG | + | tig0027944:11302-11321 | Msa1436540:CDS | 65.0% | |
| TTGTGCTCGCCGTTCCCCCA+TGG | + | tig0027944:11336-11355 | Msa1436540:CDS | 65.0% | |
| TGTGCTCGCCGTTCCCCCAT+GGG | + | tig0027944:11337-11356 | Msa1436540:CDS | 65.0% | |
| GGAACCAGCCCATGGGGGAA+CGG | - | tig0027944:11348-11367 | None:intergenic | 65.0% | |
| CATGGGCCTCCGAGACAACC+AGG | - | tig0027944:11304-11323 | None:intergenic | 65.0% | |
| CTGGTTGTCTCGGAGGCCCA+TGG | + | tig0027944:11302-11321 | Msa1436540:CDS | 65.0% | |
| TTGTGCTCGCCGTTCCCCCA+TGG | + | tig0027944:11336-11355 | Msa1436540:CDS | 65.0% | |
| TGTGCTCGCCGTTCCCCCAT+GGG | + | tig0027944:11337-11356 | Msa1436540:CDS | 65.0% | |
| GGAACCAGCCCATGGGGGAA+CGG | - | tig0027944:11348-11367 | None:intergenic | 65.0% | |
| CTCGCCGTTCCCCCATGGGC+TGG | + | tig0027944:11341-11360 | Msa1436540:CDS | 75.0% | |
| CTCGCCGTTCCCCCATGGGC+TGG | + | tig0027944:11341-11360 | Msa1436540:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027944 | gene | 11220 | 12350 | 11220 | ID=Msa1436540;Name=Msa1436540 |
| tig0027944 | mRNA | 11220 | 12350 | 11220 | ID=Msa1436540-mRNA-1;Parent=Msa1436540;Name=Msa1436540-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|376 |
| tig0027944 | exon | 11220 | 12350 | 11220 | ID=Msa1436540-mRNA-1:exon:10287;Parent=Msa1436540-mRNA-1 |
| tig0027944 | CDS | 11220 | 12350 | 11220 | ID=Msa1436540-mRNA-1:cds;Parent=Msa1436540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
