AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0323090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323090 MtrunA17_Chr2g0321431 97.988 497 6 3 1 493 1 497 0.0 999
Msa0323090 MtrunA17_Chr4g0026401 65.680 507 142 9 1 493 1 489 0.0 651
Msa0323090 MtrunA17_Chr8g0353501 62.847 288 97 3 188 465 179 466 9.87e-125 372
Msa0323090 MtrunA17_Chr1g0174701 44.658 468 175 8 36 465 85 506 1.37e-123 370
Msa0323090 MtrunA17_Chr7g0256211 59.603 302 111 3 174 465 152 452 1.86e-122 365
Msa0323090 MtrunA17_Chr7g0258321 42.947 475 186 12 21 465 44 463 1.04e-119 359
Msa0323090 MtrunA17_Chr3g0124601 54.795 292 120 4 183 465 73 361 2.79e-109 328
Msa0323090 MtrunA17_Chr5g0422771 54.167 288 122 2 188 465 177 464 9.01e-104 318
Msa0323090 MtrunA17_Chr1g0210151 47.573 309 147 3 168 465 36 340 1.59e-99 303
Msa0323090 MtrunA17_Chr5g0424861 49.679 312 145 5 162 462 37 347 1.06e-91 283
Msa0323090 MtrunA17_Chr8g0382861 51.228 285 127 4 190 465 75 356 1.67e-90 280
Msa0323090 MtrunA17_Chr3g0115371 50.865 289 133 3 190 469 65 353 7.54e-90 278
Msa0323090 MtrunA17_Chr5g0424851 45.249 221 118 1 245 462 2 222 1.57e-57 197
Msa0323090 MtrunA17_Chr5g0424851 42.157 204 116 1 252 453 223 426 2.67e-50 177
Msa0323090 MtrunA17_Chr3g0093451 45.699 186 86 4 168 341 27 209 2.44e-54 181
Msa0323090 MtrunA17_Chr1g0196951 32.828 198 112 5 266 458 59 240 7.92e-23 97.4
Msa0323090 MtrunA17_Chr8g0384821 27.615 239 124 6 257 452 15 247 2.40e-16 79.3
Msa0323090 MtrunA17_Chr7g0242651 24.885 217 143 3 255 455 7 219 1.25e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323090 AT1G08320.1 58.683 501 179 9 1 493 1 481 0.0 574
Msa0323090 AT1G08320.4 58.683 501 179 9 1 493 1 481 0.0 574
Msa0323090 AT1G08320.3 58.683 501 179 9 1 493 1 481 0.0 574
Msa0323090 AT1G08320.2 66.011 356 119 1 138 493 4 357 2.89e-176 499
Msa0323090 AT1G08320.5 66.011 356 119 1 138 493 4 357 2.89e-176 499
Msa0323090 AT5G06839.3 45.648 471 183 8 35 466 23 459 6.72e-121 362
Msa0323090 AT5G06839.1 58.228 316 108 4 175 466 101 416 7.42e-118 353
Msa0323090 AT3G12250.6 55.077 325 133 3 150 465 10 330 3.28e-117 348
Msa0323090 AT3G12250.2 55.077 325 133 3 150 465 10 330 3.28e-117 348
Msa0323090 AT3G12250.7 55.077 325 133 3 150 465 10 330 3.28e-117 348
Msa0323090 AT3G12250.1 55.077 325 133 3 150 465 10 330 3.28e-117 348
Msa0323090 AT5G06839.2 58.044 317 108 5 175 466 101 417 1.71e-116 349
Msa0323090 AT3G12250.5 58.086 303 109 4 178 465 4 303 4.00e-116 344
Msa0323090 AT3G12250.3 58.000 300 114 3 178 465 25 324 7.09e-116 344
Msa0323090 AT5G06950.2 57.333 300 116 3 178 465 31 330 1.48e-115 343
Msa0323090 AT5G06950.4 57.333 300 116 3 178 465 31 330 1.48e-115 343
Msa0323090 AT5G06950.1 57.333 300 116 3 178 465 31 330 1.48e-115 343
Msa0323090 AT5G06950.5 57.333 300 116 3 178 465 31 330 1.48e-115 343
Msa0323090 AT5G06950.3 57.333 300 116 3 178 465 31 330 1.48e-115 343
Msa0323090 AT3G12250.4 58.000 300 114 3 178 465 56 355 1.04e-114 342
Msa0323090 AT5G06960.2 59.028 288 109 2 187 465 43 330 2.70e-113 338
Msa0323090 AT5G06960.1 59.028 288 109 2 187 465 43 330 2.70e-113 338
Msa0323090 AT5G06960.3 59.028 288 109 2 187 465 23 310 5.88e-113 336
Msa0323090 AT1G22070.1 56.055 289 118 3 187 466 95 383 6.97e-103 313
Msa0323090 AT1G77920.1 51.634 306 138 3 163 465 68 366 1.94e-102 311
Msa0323090 AT5G10030.5 53.220 295 125 4 180 465 72 362 1.29e-100 306
Msa0323090 AT5G10030.3 53.220 295 125 4 180 465 72 362 1.29e-100 306
Msa0323090 AT5G10030.1 53.220 295 125 4 180 465 72 362 1.29e-100 306
Msa0323090 AT5G10030.4 53.220 295 125 4 180 465 72 362 1.29e-100 306
Msa0323090 AT5G10030.2 53.220 295 125 4 180 465 72 362 1.29e-100 306
Msa0323090 AT1G68640.1 55.102 294 117 5 185 465 161 452 1.84e-99 307
Msa0323090 AT5G65210.6 51.536 293 133 3 180 465 6 296 7.66e-96 292
Msa0323090 AT5G65210.5 51.536 293 133 3 180 465 76 366 8.35e-96 295
Msa0323090 AT5G65210.7 51.536 293 133 3 180 465 76 366 8.35e-96 295
Msa0323090 AT5G65210.3 51.536 293 133 3 180 465 76 366 8.35e-96 295
Msa0323090 AT5G65210.1 51.536 293 133 3 180 465 76 366 8.35e-96 295
Msa0323090 AT5G65210.2 51.536 293 133 3 180 465 76 366 8.35e-96 295
Msa0323090 AT5G65210.4 51.536 293 133 3 180 465 76 366 8.35e-96 295
Msa0323090 AT1G58330.1 26.244 221 148 4 250 455 3 223 2.60e-14 72.8

Find 105 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGGAAATGTTCCCTTCT+TGG 0.211576 2_4:-26745927 Msa0323090:CDS
AATCAAGTTCTCCTATTCTT+TGG 0.233116 2_4:+26746725 None:intergenic
TTCATCAGATCATAATAATA+TGG 0.236469 2_4:-26745535 Msa0323090:CDS
AAGCTGAACGTTGCTTTCTT+TGG 0.242516 2_4:-26742815 Msa0323090:CDS
GAAAATGTCAGTTGTTATCT+AGG 0.286466 2_4:-26739972 Msa0323090:three_prime_UTR
TTAGAGCTCTTAGTTCTCTT+TGG 0.292211 2_4:-26740455 Msa0323090:CDS
TCAACTCATCATGTCCCTTA+TGG 0.310663 2_4:-26746685 Msa0323090:CDS
ACTAGCAGAGCAGCAGATAA+TGG 0.313627 2_4:-26741717 Msa0323090:CDS
TAGAGCTCTTAGTTCTCTTT+GGG 0.313649 2_4:-26740454 Msa0323090:CDS
GAAAAGTCGTCTAAGGAAAA+AGG 0.321473 2_4:-26744437 Msa0323090:intron
TACATTTACAATAAACATAA+AGG 0.322924 2_4:+26739905 None:intergenic
AATTGAAAAGGGTATGTTCA+TGG 0.336673 2_4:-26744152 Msa0323090:intron
GCAATGTTTGACATGGAATA+TGG 0.352960 2_4:-26743026 Msa0323090:CDS
TCTCTTGTTGACACCATTGC+TGG 0.353849 2_4:-26741620 Msa0323090:CDS
CTAGCAGAGCAGCAGATAAT+GGG 0.357751 2_4:-26741716 Msa0323090:CDS
TTTGCATATCCGTGGTTGTT+TGG 0.361993 2_4:+26740078 None:intergenic
TAGATTAAAGCTTACACAAT+TGG 0.368639 2_4:-26744290 Msa0323090:CDS
CTGCTAGTGGCTCCAATTGT+TGG 0.369578 2_4:+26741732 None:intergenic
AAGGGTGATTCTTGCTCAAA+AGG 0.370182 2_4:+26745579 None:intergenic
TTACTACTGTTGAGGTTTGA+TGG 0.373913 2_4:+26745893 None:intergenic
CTTGTTATTGGAGAATACTA+TGG 0.375599 2_4:-26740483 Msa0323090:CDS
GCTGGAGGACCCCTTGTTGA+TGG 0.376451 2_4:-26741602 Msa0323090:CDS
GTCCTACAAGTGGTTCTTGT+TGG 0.388033 2_4:-26740004 Msa0323090:three_prime_UTR
TTTGTTAGGAATGAAGAATC+TGG 0.392918 2_4:-26746528 Msa0323090:intron
TATTTCTCTTTAGCTAAAGT+TGG 0.401155 2_4:+26739851 None:intergenic
TGAGACGTTTAGCACAAAAC+AGG 0.401597 2_4:-26744471 Msa0323090:CDS
TTCCAGTGTAGCAGCAGGTC+TGG 0.402076 2_4:+26745942 None:intergenic
ATGGATTGGAGTGGAGGTGT+TGG 0.411382 2_4:-26744133 Msa0323090:CDS
GTGTGAGTAATCGACATAAT+TGG 0.411816 2_4:+26740529 None:intergenic
TCCTACAAGTGGTTCTTGTT+GGG 0.416938 2_4:-26740003 Msa0323090:three_prime_UTR
TCAGATGTTGATCCAACAAT+TGG 0.417161 2_4:-26741744 Msa0323090:intron
TTCTTAACTCCGTTAATAAA+CGG 0.419059 2_4:+26742982 None:intergenic
CTGCAAGGAAAAGTCGTCTA+AGG 0.422741 2_4:-26744444 Msa0323090:CDS
GGCAAGCTTGCCAATCTTGA+AGG 0.422961 2_4:-26741554 Msa0323090:CDS
AGAAGACAACCGTTTATTAA+CGG 0.423518 2_4:-26742991 Msa0323090:CDS
TCCCTTATGGAATTCATCAT+AGG 0.425244 2_4:-26746672 Msa0323090:CDS
AGCCAGACCTGCTGCTACAC+TGG 0.430461 2_4:-26745944 Msa0323090:CDS
CGTTGCTTTCTTTGGATTGG+TGG 0.434409 2_4:-26742807 Msa0323090:CDS
CAGGGAGGTGGTAACAAATC+AGG 0.446249 2_4:-26745645 Msa0323090:CDS
TAATACATTAAACTTGATGA+AGG 0.448293 2_4:+26746640 None:intergenic
GAACGTTGCTTTCTTTGGAT+TGG 0.453952 2_4:-26742810 Msa0323090:CDS
GACGTGTTTCATCTTATCAA+TGG 0.455217 2_4:-26742852 Msa0323090:CDS
ATCCTATGATGAATTCCATA+AGG 0.459315 2_4:+26746670 None:intergenic
CAACAAATGGTTGTTGCCAT+AGG 0.467436 2_4:-26741575 Msa0323090:CDS
ACAGTTTATGAAAATTGAAA+AGG 0.467559 2_4:-26739823 Msa0323090:three_prime_UTR
CAACAAGAGACTGTTGCAAC+TGG 0.468138 2_4:+26741633 None:intergenic
TAGACCCTCTGAAATTATCA+TGG 0.469132 2_4:-26742781 Msa0323090:intron
AAGATTGGCAAGCTTGCCTA+TGG 0.469646 2_4:+26741559 None:intergenic
CAGCAGATAATGGGGATGTA+TGG 0.469706 2_4:-26741707 Msa0323090:CDS
ACGAAGAAAACCTTCAAGAT+TGG 0.470177 2_4:+26741544 None:intergenic
AAAAGGGTATGTTCATGGAT+TGG 0.472621 2_4:-26744147 Msa0323090:intron
TGGAATCTCATTGGCCAAGA+AGG 0.473970 2_4:+26745913 None:intergenic
TCCTATGATGAATTCCATAA+GGG 0.488783 2_4:+26746671 None:intergenic
AGGGTGATTCTTGCTCAAAA+GGG 0.490521 2_4:+26745580 None:intergenic
ATGTTCATGGATTGGAGTGG+AGG 0.491384 2_4:-26744139 Msa0323090:CDS
TGTTGATGGTGTTCAACAAA+TGG 0.493901 2_4:-26741588 Msa0323090:CDS
GAGGTTTGATGGAATCTCAT+TGG 0.494784 2_4:+26745904 None:intergenic
GCCCAACAAGAACCACTTGT+AGG 0.495907 2_4:+26740002 None:intergenic
CATTCAAAGAGCACGCTCTC+AGG 0.496954 2_4:-26744260 Msa0323090:intron
AACAACCACGGATATGCAAA+TGG 0.498862 2_4:-26740075 Msa0323090:CDS
GATTGGAGTGGAGGTGTTGG+AGG 0.501212 2_4:-26744130 Msa0323090:CDS
ATAAACACCTTTGCATCAAG+TGG 0.519298 2_4:+26744585 None:intergenic
ATCAGCAGCAGCCAAAGAAA+AGG 0.524596 2_4:-26745418 Msa0323090:intron
ACTAACCATGATAATTTCAG+AGG 0.533906 2_4:+26742776 None:intergenic
CACAAAACAGGGAGGCTGCA+AGG 0.543811 2_4:-26744459 Msa0323090:CDS
AACATTTCCAGTGTAGCAGC+AGG 0.549096 2_4:+26745937 None:intergenic
ATTATCTGCTGCTCTGCTAG+TGG 0.553911 2_4:+26741719 None:intergenic
GTTGGAGGAAATATAAGCTC+TGG 0.554357 2_4:-26744115 Msa0323090:intron
CTTGTTGACACCATTGCTGG+AGG 0.554730 2_4:-26741617 Msa0323090:CDS
ATTACTCACACTTCGTCAAG+CGG 0.557736 2_4:-26740517 Msa0323090:CDS
AATTGAAGGCTGATAACTTG+AGG 0.558228 2_4:-26740566 Msa0323090:intron
TTATTAACGGAGTTAAGAAA+CGG 0.562286 2_4:-26742978 Msa0323090:CDS
GATCAAATATTTAGACTCAA+AGG 0.563784 2_4:-26742891 Msa0323090:CDS
GGAATCTCATTGGCCAAGAA+GGG 0.563800 2_4:+26745914 None:intergenic
AGATAAGCCACTTGATGCAA+AGG 0.567470 2_4:-26744592 Msa0323090:intron
AGAGAGTATTACTACTGTTG+AGG 0.572603 2_4:+26745885 None:intergenic
TTTGTGAAATGATTCTGAGA+AGG 0.574512 2_4:+26740047 None:intergenic
GCAGAGGAAGCTCTCTCACA+AGG 0.575222 2_4:-26741662 Msa0323090:CDS
AACAAGGGGTCCTCCAGCAA+TGG 0.575749 2_4:+26741607 None:intergenic
TTGAACCATTTGCATATCCG+TGG 0.584485 2_4:+26740070 None:intergenic
TTTGTTGAACACCATCAACA+AGG 0.585380 2_4:+26741591 None:intergenic
TGCATGGCGAGCCAAAGAAT+AGG 0.589611 2_4:-26746736 Msa0323090:CDS
AGATAATGAAATGAGAGTAA+TGG 0.594040 2_4:-26742937 Msa0323090:CDS
TATTTGATTCTGTGATGAAG+AGG 0.598778 2_4:+26745440 None:intergenic
GAAATGAGAGTAATGGTGGA+TGG 0.599016 2_4:-26742930 Msa0323090:CDS
ATATATTTAACTTACTCTCG+TGG 0.607255 2_4:+26740423 None:intergenic
TTCATCTTATCAATGGCATG+TGG 0.610713 2_4:-26742845 Msa0323090:CDS
TAATGAAATGAGAGTAATGG+TGG 0.614982 2_4:-26742934 Msa0323090:CDS
TTGTTGAACACCATCAACAA+GGG 0.615909 2_4:+26741592 None:intergenic
TTGACATGGAATATGGAAGA+TGG 0.624451 2_4:-26743019 Msa0323090:CDS
AATTTGGAAATACAGGGAGG+TGG 0.625564 2_4:-26745657 Msa0323090:intron
GTTAAGAAACGGATTGCAAG+CGG 0.631491 2_4:-26742967 Msa0323090:CDS
ATGTATTAAAGTCCTACAAG+TGG 0.637890 2_4:-26740014 Msa0323090:three_prime_UTR
TAGCAGAGCAGCAGATAATG+GGG 0.639568 2_4:-26741715 Msa0323090:CDS
GCATTCTTCACAGCAAGCAG+AGG 0.646463 2_4:-26741678 Msa0323090:CDS
GAGACGTTTAGCACAAAACA+GGG 0.648005 2_4:-26744470 Msa0323090:CDS
AGGAGGTGCAATGTTTGACA+TGG 0.651643 2_4:-26743033 Msa0323090:CDS
TGTTGAACACCATCAACAAG+GGG 0.659117 2_4:+26741593 None:intergenic
CTAACCATGATAATTTCAGA+GGG 0.659541 2_4:+26742777 None:intergenic
TGAGCTTTATGTGCATGATG+AGG 0.680307 2_4:-26739879 Msa0323090:three_prime_UTR
TAACTCATGCCAAACAACCA+CGG 0.685861 2_4:-26740087 Msa0323090:CDS
GGAGGTGGTAACAAATCAGG+AGG 0.698135 2_4:-26745642 Msa0323090:CDS
GGTATGTTCATGGATTGGAG+TGG 0.698181 2_4:-26744142 Msa0323090:CDS
TAATGGGGATGTATGGACTG+AGG 0.699689 2_4:-26741700 Msa0323090:CDS
ACGTTTAGCACAAAACAGGG+AGG 0.779708 2_4:-26744467 Msa0323090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTCAATAAATTATAAATA+AGG - chr2_4:26739936-26739955 Msa0323090:three_prime_UTR 10.0%
!! AAATATAAAGTTAATAGATT+AGG - chr2_4:26740467-26740486 Msa0323090:CDS 10.0%
!!! ATTTTAACTTTTAATTGAAA+AGG - chr2_4:26742387-26742406 Msa0323090:intron 10.0%
!!! TTTTAACTTTTAATTGAAAA+GGG - chr2_4:26742388-26742407 Msa0323090:intron 10.0%
!!! GAGTTTATATATTTTAAAAA+AGG + chr2_4:26742743-26742762 None:intergenic 10.0%
!! TTATTGTATTAATAAATTGT+AGG - chr2_4:26743498-26743517 Msa0323090:intron 10.0%
!! TAATAAAGGAATTATATTAT+GGG - chr2_4:26743873-26743892 Msa0323090:intron 10.0%
!! ATTATATATTTACATTTAGT+TGG - chr2_4:26746156-26746175 Msa0323090:intron 10.0%
!! TAATTAAAGATAAAGAAAAA+TGG + chr2_4:26746364-26746383 None:intergenic 10.0%
!!! AATACCTTTTACAATTATTT+TGG - chr2_4:26740504-26740523 Msa0323090:CDS 15.0%
!! TTTACCAAAATAATTGTAAA+AGG + chr2_4:26740511-26740530 None:intergenic 15.0%
!!! AAATTTAAAGCCTTTTATTT+TGG - chr2_4:26740531-26740550 Msa0323090:CDS 15.0%
!! TAAGCATAATTAAAATAGAT+TGG + chr2_4:26740700-26740719 None:intergenic 15.0%
!! GTATAGTCAAATAATTTAAT+CGG + chr2_4:26740864-26740883 None:intergenic 15.0%
!!! TTTTTTTTGTTGTAGAAAAA+AGG - chr2_4:26741921-26741940 Msa0323090:intron 15.0%
!!! AGTTTAGTTTACATTTTTTT+GGG - chr2_4:26742461-26742480 Msa0323090:intron 15.0%
!! AATAAATTACTAGTAAATGA+TGG + chr2_4:26742537-26742556 None:intergenic 15.0%
!! AGTTATTTATTCATAGATTT+CGG + chr2_4:26742663-26742682 None:intergenic 15.0%
!!! CATTGTTTCAAATTATTTTT+TGG - chr2_4:26743011-26743030 Msa0323090:CDS 15.0%
!! TTATTATTACTAAAAAGAAG+TGG + chr2_4:26743222-26743241 None:intergenic 15.0%
!!! ATAATAATACAACTTTTGAA+AGG - chr2_4:26743235-26743254 Msa0323090:intron 15.0%
!! TAATCACAAGAAATTAAATT+TGG - chr2_4:26743355-26743374 Msa0323090:intron 15.0%
!!! TTTACATTTTGATATTATGT+CGG + chr2_4:26743425-26743444 None:intergenic 15.0%
!! ACCAAATTACAAATTAATTA+TGG + chr2_4:26743821-26743840 None:intergenic 15.0%
!! GTAATAAAGGAATTATATTA+TGG - chr2_4:26743872-26743891 Msa0323090:intron 15.0%
!! AAGATGTTTGTTTATTAAAA+TGG - chr2_4:26743979-26743998 Msa0323090:intron 15.0%
!! ACAAAATAAATTGTAACAAA+CGG - chr2_4:26744196-26744215 Msa0323090:intron 15.0%
!!! GTTGAAATACATTTTAATTA+TGG - chr2_4:26746204-26746223 Msa0323090:intron 15.0%
!! TTGAATGTAACAAAATAAAT+TGG + chr2_4:26746422-26746441 None:intergenic 15.0%
!! TACATTTACAATAAACATAA+AGG + chr2_4:26746649-26746668 None:intergenic 15.0%
!! TAATACATTAAACTTGATGA+AGG + chr2_4:26739914-26739933 None:intergenic 20.0%
!!! TAGTACTGTTTTATTCATTT+TGG - chr2_4:26739962-26739981 Msa0323090:three_prime_UTR 20.0%
!!! AATGTTTTTGTTTGTTTGTT+AGG - chr2_4:26740009-26740028 Msa0323090:three_prime_UTR 20.0%
!! AAAGAAAAAAAAAATCTGAG+AGG + chr2_4:26740562-26740581 None:intergenic 20.0%
!! TTCATCAGATCATAATAATA+TGG - chr2_4:26741016-26741035 Msa0323090:intron 20.0%
!!! TTTACTATTAACCTTTTCTT+TGG + chr2_4:26741147-26741166 None:intergenic 20.0%
!! GTATCTATATCTATATGTAT+AGG + chr2_4:26742149-26742168 None:intergenic 20.0%
!!! GAGTTTAGTTTACATTTTTT+TGG - chr2_4:26742460-26742479 Msa0323090:intron 20.0%
!!! GTTTAGTTTACATTTTTTTG+GGG - chr2_4:26742462-26742481 Msa0323090:intron 20.0%
!!! ATACTTTTGAACATAAACAT+TGG + chr2_4:26742718-26742737 None:intergenic 20.0%
!! TAGTTTATACATGATAGAAA+AGG + chr2_4:26742784-26742803 None:intergenic 20.0%
!! AAAAGCCAAAGTATATATAA+AGG + chr2_4:26743163-26743182 None:intergenic 20.0%
!!! ACTTTTGAAAGGAAAAAAAA+AGG - chr2_4:26743246-26743265 Msa0323090:intron 20.0%
!!! AAAAAATGCACTTTAAGAAA+AGG - chr2_4:26743297-26743316 Msa0323090:intron 20.0%
!! TTTCTTGTGATTAAACAAAA+TGG + chr2_4:26743348-26743367 None:intergenic 20.0%
!! TTGTATTAATAAATTGTAGG+AGG - chr2_4:26743501-26743520 Msa0323090:intron 20.0%
!!! TTTTTAACAACTTGTAACAA+AGG - chr2_4:26744107-26744126 Msa0323090:intron 20.0%
!! CAAAATAAATTGTAACAAAC+GGG - chr2_4:26744197-26744216 Msa0323090:intron 20.0%
!!! AAAAGAGTGTGTATTATAAA+GGG + chr2_4:26744342-26744361 None:intergenic 20.0%
!!! TAAAAGAGTGTGTATTATAA+AGG + chr2_4:26744343-26744362 None:intergenic 20.0%
!! TTAATGAATGAAATCAATGT+CGG - chr2_4:26744364-26744383 Msa0323090:intron 20.0%
!!! ATATGCTAATGTTGATAATT+TGG - chr2_4:26744779-26744798 Msa0323090:intron 20.0%
!!! TTGAATGAAACATTTTAAGA+TGG + chr2_4:26745619-26745638 None:intergenic 20.0%
!! AAAATGTTTCATTCAAAAGT+TGG - chr2_4:26745623-26745642 Msa0323090:CDS 20.0%
!!! AGTGATTATGTTAGTTTTTA+GGG + chr2_4:26745782-26745801 None:intergenic 20.0%
!!! TAGTGATTATGTTAGTTTTT+AGG + chr2_4:26745783-26745802 None:intergenic 20.0%
!!! CATTCATATTTTTCAATTGA+AGG - chr2_4:26745971-26745990 Msa0323090:intron 20.0%
!!! TTATTTTGTTACATTCAAAC+AGG - chr2_4:26746424-26746443 Msa0323090:intron 20.0%
!! ACAGTTTATGAAAATTGAAA+AGG - chr2_4:26746728-26746747 Msa0323090:CDS 20.0%
!!! AAGAATCTGGTTTTGATTTT+GGG - chr2_4:26740036-26740055 Msa0323090:exon 25.0%
!! AATCATTATGGTATTGGAAA+TGG + chr2_4:26740357-26740376 None:intergenic 25.0%
! TCAGTAAAAATCATGCAAAA+GGG + chr2_4:26740433-26740452 None:intergenic 25.0%
! ACTTTATATTTCAGCAGTTA+TGG + chr2_4:26740458-26740477 None:intergenic 25.0%
! CTATACTAATGATCTGAATT+TGG - chr2_4:26740878-26740897 Msa0323090:intron 25.0%
!!! GAAGATGCTTTTTTACTTAA+GGG + chr2_4:26740993-26741012 None:intergenic 25.0%
!!! AGAAGATGCTTTTTTACTTA+AGG + chr2_4:26740994-26741013 None:intergenic 25.0%
! CAAAATTTCCCTTAGTTTAT+GGG + chr2_4:26741227-26741246 None:intergenic 25.0%
! TTGAATTTGTACTATCTTCT+TGG - chr2_4:26741271-26741290 Msa0323090:intron 25.0%
!!! TTGATTTTCTGAAATCTGTT+GGG + chr2_4:26741318-26741337 None:intergenic 25.0%
!!! TTTGATTTTCTGAAATCTGT+TGG + chr2_4:26741319-26741338 None:intergenic 25.0%
! AAGAAACAGTTCACAAAAAA+TGG - chr2_4:26741570-26741589 Msa0323090:CDS 25.0%
! AATCATCTTCAATGTGATAA+GGG + chr2_4:26741618-26741637 None:intergenic 25.0%
! CAAAAATGTGCACATAAAAA+TGG + chr2_4:26741833-26741852 None:intergenic 25.0%
!! TGTTGATGTTTTATATGCTA+AGG - chr2_4:26742032-26742051 Msa0323090:intron 25.0%
!!! ACTCATTGCATTTTTTTTAC+AGG - chr2_4:26742213-26742232 Msa0323090:intron 25.0%
! TAGATTAAAGCTTACACAAT+TGG - chr2_4:26742261-26742280 Msa0323090:intron 25.0%
! AAAGTCAAAACTTGATCTTA+TGG - chr2_4:26742599-26742618 Msa0323090:intron 25.0%
! AAGTCAAAACTTGATCTTAT+GGG - chr2_4:26742600-26742619 Msa0323090:intron 25.0%
!! TATATAAAAGCTGCTTTCAA+AGG - chr2_4:26742804-26742823 Msa0323090:CDS 25.0%
!! ATATAAAAGCTGCTTTCAAA+GGG - chr2_4:26742805-26742824 Msa0323090:CDS 25.0%
! AGTCTCCTTTATATATACTT+TGG - chr2_4:26743155-26743174 Msa0323090:intron 25.0%
! CATATTAATTGTGATGAGTT+TGG + chr2_4:26743472-26743491 None:intergenic 25.0%
! TTCTTAACTCCGTTAATAAA+CGG + chr2_4:26743572-26743591 None:intergenic 25.0%
! TTATTAACGGAGTTAAGAAA+CGG - chr2_4:26743573-26743592 Msa0323090:intron 25.0%
! AGATAATGAAATGAGAGTAA+TGG - chr2_4:26743614-26743633 Msa0323090:intron 25.0%
! GATCAAATATTTAGACTCAA+AGG - chr2_4:26743660-26743679 Msa0323090:intron 25.0%
! AATGTGAAACTTCGTAATAA+AGG - chr2_4:26743859-26743878 Msa0323090:intron 25.0%
! AACTATTTCAAATGAGAAGT+TGG + chr2_4:26744062-26744081 None:intergenic 25.0%
!! AAAGAGTGTGTATTATAAAG+GGG + chr2_4:26744341-26744360 None:intergenic 25.0%
! TAAAAAAGTGAGTGTCATAT+TGG - chr2_4:26744428-26744447 Msa0323090:intron 25.0%
! AAAAAAGTGAGTGTCATATT+GGG - chr2_4:26744429-26744448 Msa0323090:intron 25.0%
!!! GCTTGTGAGTTTTTTTTTTA+TGG - chr2_4:26744544-26744563 Msa0323090:intron 25.0%
! AGCAATATTCAAACTATATG+TGG + chr2_4:26745134-26745153 None:intergenic 25.0%
!!! CTTTTTTGCAATTTGAATCA+AGG - chr2_4:26745156-26745175 Msa0323090:intron 25.0%
! ATAGATCACAAGGAAATAAT+GGG + chr2_4:26745200-26745219 None:intergenic 25.0%
! CAGATAATAAAATGTTAGGT+AGG + chr2_4:26745267-26745286 None:intergenic 25.0%
!! CTACCTAACATTTTATTATC+TGG - chr2_4:26745265-26745284 Msa0323090:intron 25.0%
! GTACCAGATAATAAAATGTT+AGG + chr2_4:26745271-26745290 None:intergenic 25.0%
!! TTTCAACTATTTTCCCTTAT+TGG - chr2_4:26745912-26745931 Msa0323090:CDS 25.0%
!! ATATATTTAACTTACTCTCG+TGG + chr2_4:26746131-26746150 None:intergenic 25.0%
! TTAATTTCATGCATGTTTGT+AGG - chr2_4:26746182-26746201 Msa0323090:intron 25.0%
! AGCAAAATTATAACACCATT+TGG + chr2_4:26746306-26746325 None:intergenic 25.0%
!!! TACTTTTTAATCATCTGTTC+TGG - chr2_4:26746621-26746640 Msa0323090:intron 25.0%
! TATTTCTCTTTAGCTAAAGT+TGG + chr2_4:26746703-26746722 None:intergenic 25.0%
AATCAAGTTCTCCTATTCTT+TGG + chr2_4:26739829-26739848 None:intergenic 30.0%
TCCTATGATGAATTCCATAA+GGG + chr2_4:26739883-26739902 None:intergenic 30.0%
ATCCTATGATGAATTCCATA+AGG + chr2_4:26739884-26739903 None:intergenic 30.0%
TTTGTTAGGAATGAAGAATC+TGG - chr2_4:26740023-26740042 Msa0323090:exon 30.0%
!!! GAAGAATCTGGTTTTGATTT+TGG - chr2_4:26740035-26740054 Msa0323090:exon 30.0%
!!! AGAATCTGGTTTTGATTTTG+GGG - chr2_4:26740037-26740056 Msa0323090:exon 30.0%
!! GAAGAAACAATTGTTTTGCA+AGG - chr2_4:26740065-26740084 Msa0323090:CDS 30.0%
! TCTAAGGTCAGAAAAAAAAG+TGG + chr2_4:26740150-26740169 None:intergenic 30.0%
! CAACTCTTTCTAAAAGTAGA+GGG - chr2_4:26740180-26740199 Msa0323090:intron 30.0%
GTCAGTAAAAATCATGCAAA+AGG + chr2_4:26740434-26740453 None:intergenic 30.0%
AGAGGATCAACCAAAATAAA+AGG + chr2_4:26740544-26740563 None:intergenic 30.0%
TGATCTGAATTTGGAAATAC+AGG - chr2_4:26740887-26740906 Msa0323090:intron 30.0%
GATCTGAATTTGGAAATACA+GGG - chr2_4:26740888-26740907 Msa0323090:intron 30.0%
TATTTGATTCTGTGATGAAG+AGG + chr2_4:26741114-26741133 None:intergenic 30.0%
TTTCCATATCCCATAAACTA+AGG - chr2_4:26741215-26741234 Msa0323090:intron 30.0%
TTCCATATCCCATAAACTAA+GGG - chr2_4:26741216-26741235 Msa0323090:intron 30.0%
CCAAAATTTCCCTTAGTTTA+TGG + chr2_4:26741228-26741247 None:intergenic 30.0%
! CCATAAACTAAGGGAAATTT+TGG - chr2_4:26741225-26741244 Msa0323090:intron 30.0%
CAATCATCTTCAATGTGATA+AGG + chr2_4:26741619-26741638 None:intergenic 30.0%
TTCAACCAAGAACAAAAAGA+TGG + chr2_4:26741716-26741735 None:intergenic 30.0%
! AATTGAAAAGGGTATGTTCA+TGG - chr2_4:26742399-26742418 Msa0323090:intron 30.0%
GAACATAAACATTGGCATAT+TGG + chr2_4:26742710-26742729 None:intergenic 30.0%
CTGCAAAAGAAATATTCAAG+TGG + chr2_4:26742833-26742852 None:intergenic 30.0%
! TGAATATTTCTTTTGCAGCT+TGG - chr2_4:26742835-26742854 Msa0323090:CDS 30.0%
! TTTTGCAGCTTGGATTAATT+TGG - chr2_4:26742845-26742864 Msa0323090:CDS 30.0%
!! TAATTTGGCTCTCTATCTTT+AGG - chr2_4:26742860-26742879 Msa0323090:CDS 30.0%
!! AATTTGGCTCTCTATCTTTA+GGG - chr2_4:26742861-26742880 Msa0323090:CDS 30.0%
!! TGATATTATGTCGGTTGTTT+TGG + chr2_4:26743416-26743435 None:intergenic 30.0%
AGAAGACAACCGTTTATTAA+CGG - chr2_4:26743560-26743579 Msa0323090:intron 30.0%
TAATGAAATGAGAGTAATGG+TGG - chr2_4:26743617-26743636 Msa0323090:intron 30.0%
CTAACCATGATAATTTCAGA+GGG + chr2_4:26743777-26743796 None:intergenic 30.0%
ACTAACCATGATAATTTCAG+AGG + chr2_4:26743778-26743797 None:intergenic 30.0%
TAACAACTTGTAACAAAGGA+TGG - chr2_4:26744111-26744130 Msa0323090:intron 30.0%
AAAAAGTGAGTGTCATATTG+GGG - chr2_4:26744430-26744449 Msa0323090:intron 30.0%
GGTTACGTTTAGACATAAAT+AGG - chr2_4:26744583-26744602 Msa0323090:intron 30.0%
! GTACACACTAATTTGCATTA+AGG - chr2_4:26744747-26744766 Msa0323090:intron 30.0%
CATAGATCACAAGGAAATAA+TGG + chr2_4:26745201-26745220 None:intergenic 30.0%
TTATTTCCTTGTGATCTATG+TGG - chr2_4:26745201-26745220 Msa0323090:intron 30.0%
GATATAACAACGTACATTTG+TGG + chr2_4:26745245-26745264 None:intergenic 30.0%
CCTTAAATTCAATCAAGATC+GGG + chr2_4:26745310-26745329 None:intergenic 30.0%
CCCTTAAATTCAATCAAGAT+CGG + chr2_4:26745311-26745330 None:intergenic 30.0%
CCGATCTTGATTGAATTTAA+GGG - chr2_4:26745308-26745327 Msa0323090:intron 30.0%
TTAAATTACCTCCACTACTT+TGG - chr2_4:26745466-26745485 Msa0323090:CDS 30.0%
CTATGAGTTAGCAACATAAT+TGG + chr2_4:26745509-26745528 None:intergenic 30.0%
!!! AAGTTGGTTTTAGAAAGTGA+TGG - chr2_4:26745639-26745658 Msa0323090:CDS 30.0%
AGTAGTTAACTCATTTCTTG+AGG - chr2_4:26745718-26745737 Msa0323090:intron 30.0%
AATAAAGCAGTAGCTAGTAT+AGG - chr2_4:26745823-26745842 Msa0323090:intron 30.0%
GATAAGCAATAAGCCAATAA+GGG + chr2_4:26745928-26745947 None:intergenic 30.0%
AGATAAGCAATAAGCCAATA+AGG + chr2_4:26745929-26745948 None:intergenic 30.0%
!! CTTGTTATTGGAGAATACTA+TGG - chr2_4:26746068-26746087 Msa0323090:intron 30.0%
! GATATTTTTCATGTGCCAAA+TGG - chr2_4:26746288-26746307 Msa0323090:intron 30.0%
! TTTGTGAAATGATTCTGAGA+AGG + chr2_4:26746507-26746526 None:intergenic 30.0%
ATGTATTAAAGTCCTACAAG+TGG - chr2_4:26746537-26746556 Msa0323090:intron 30.0%
GAAAATGTCAGTTGTTATCT+AGG - chr2_4:26746579-26746598 Msa0323090:intron 30.0%
!!! GAACTTGATTTTTCTGAGAC+AGG - chr2_4:26739839-26739858 Msa0323090:three_prime_UTR 35.0%
TCCCTTATGGAATTCATCAT+AGG - chr2_4:26739879-26739898 Msa0323090:three_prime_UTR 35.0%
! GTTTTGCAAGGAGTTAAGAA+TGG - chr2_4:26740077-26740096 Msa0323090:CDS 35.0%
! GAGTTGGTTATGCTTATCTA+AGG + chr2_4:26740166-26740185 None:intergenic 35.0%
!! CCTCTACTTTTAGAAAGAGT+TGG + chr2_4:26740182-26740201 None:intergenic 35.0%
! CCAACTCTTTCTAAAAGTAG+AGG - chr2_4:26740179-26740198 Msa0323090:intron 35.0%
CCTCAGAATCATTATGGTAT+TGG + chr2_4:26740363-26740382 None:intergenic 35.0%
CCAATACCATAATGATTCTG+AGG - chr2_4:26740360-26740379 Msa0323090:intron 35.0%
CTATTGCCTCAGAATCATTA+TGG + chr2_4:26740369-26740388 None:intergenic 35.0%
TTACTACTGTTGAGGTTTGA+TGG + chr2_4:26740661-26740680 None:intergenic 35.0%
!! AGAGAGTATTACTACTGTTG+AGG + chr2_4:26740669-26740688 None:intergenic 35.0%
TAAACGAATCGATACGACAA+GGG + chr2_4:26740817-26740836 None:intergenic 35.0%
TTAAACGAATCGATACGACA+AGG + chr2_4:26740818-26740837 None:intergenic 35.0%
TTCCCTTAGTTTATGGGATA+TGG + chr2_4:26741221-26741240 None:intergenic 35.0%
TTCATGTCAGAAAATCGTTC+AGG + chr2_4:26741364-26741383 None:intergenic 35.0%
ATGTGATAAGGGTAGCAAAA+TGG + chr2_4:26741607-26741626 None:intergenic 35.0%
ATTGCATTCCTACTGAGAAA+TGG - chr2_4:26741635-26741654 Msa0323090:CDS 35.0%
! TCATGCCATCTTTTTGTTCT+TGG - chr2_4:26741708-26741727 Msa0323090:CDS 35.0%
ATGGTTAAGCAAATGAGTGA+GGG + chr2_4:26741814-26741833 None:intergenic 35.0%
AATGGTTAAGCAAATGAGTG+AGG + chr2_4:26741815-26741834 None:intergenic 35.0%
TTGTTGTAGAAAAAAGGAGC+TGG - chr2_4:26741927-26741946 Msa0323090:intron 35.0%
ATAAACACCTTTGCATCAAG+TGG + chr2_4:26741969-26741988 None:intergenic 35.0%
GAAAAGTCGTCTAAGGAAAA+AGG - chr2_4:26742114-26742133 Msa0323090:intron 35.0%
! AAAAGGGTATGTTCATGGAT+TGG - chr2_4:26742404-26742423 Msa0323090:intron 35.0%
!! ATTTGGCTCTCTATCTTTAG+GGG - chr2_4:26742862-26742881 Msa0323090:CDS 35.0%
GGAAATGAGCAGTATCATAA+TGG + chr2_4:26743201-26743220 None:intergenic 35.0%
GCAATGTTTGACATGGAATA+TGG - chr2_4:26743525-26743544 Msa0323090:intron 35.0%
TTGACATGGAATATGGAAGA+TGG - chr2_4:26743532-26743551 Msa0323090:intron 35.0%
GACGTGTTTCATCTTATCAA+TGG - chr2_4:26743699-26743718 Msa0323090:intron 35.0%
TTCATCTTATCAATGGCATG+TGG - chr2_4:26743706-26743725 Msa0323090:intron 35.0%
!! TAGACCCTCTGAAATTATCA+TGG - chr2_4:26743770-26743789 Msa0323090:intron 35.0%
TCATATTGGGGTGTATAAGA+TGG - chr2_4:26744442-26744461 Msa0323090:CDS 35.0%
TCAGATGTTGATCCAACAAT+TGG - chr2_4:26744807-26744826 Msa0323090:intron 35.0%
TTGTTGAACACCATCAACAA+GGG + chr2_4:26744962-26744981 None:intergenic 35.0%
TTTGTTGAACACCATCAACA+AGG + chr2_4:26744963-26744982 None:intergenic 35.0%
!! TGTTGATGGTGTTCAACAAA+TGG - chr2_4:26744963-26744982 Msa0323090:intron 35.0%
ACGAAGAAAACCTTCAAGAT+TGG + chr2_4:26745010-26745029 None:intergenic 35.0%
CCCGATCTTGATTGAATTTA+AGG - chr2_4:26745307-26745326 Msa0323090:intron 35.0%
! CTAACTTTTGAGCAACATGA+TGG + chr2_4:26745573-26745592 None:intergenic 35.0%
CATCATGTTGCTCAAAAGTT+AGG - chr2_4:26745571-26745590 Msa0323090:CDS 35.0%
TGCTCAAAAGTTAGGTCATA+AGG - chr2_4:26745579-26745598 Msa0323090:CDS 35.0%
!! CTGAAAGAGCTTTGTCTTTT+AGG - chr2_4:26745750-26745769 Msa0323090:intron 35.0%
AATTGAAGGCTGATAACTTG+AGG - chr2_4:26745985-26746004 Msa0323090:intron 35.0%
GTGTGAGTAATCGACATAAT+TGG + chr2_4:26746025-26746044 None:intergenic 35.0%
! TTAGAGCTCTTAGTTCTCTT+TGG - chr2_4:26746096-26746115 Msa0323090:intron 35.0%
! TAGAGCTCTTAGTTCTCTTT+GGG - chr2_4:26746097-26746116 Msa0323090:intron 35.0%
TCAACTCATCATGTCCCTTA+TGG - chr2_4:26739866-26739885 Msa0323090:three_prime_UTR 40.0%
!! TGATTCTGAGGCAATAGACA+TGG - chr2_4:26740372-26740391 Msa0323090:intron 40.0%
!! GATTCTGAGGCAATAGACAT+GGG - chr2_4:26740373-26740392 Msa0323090:intron 40.0%
AATCATGCAAAAGGGTAGTG+AGG + chr2_4:26740425-26740444 None:intergenic 40.0%
GAGGTTTGATGGAATCTCAT+TGG + chr2_4:26740650-26740669 None:intergenic 40.0%
CTGAATTTGGAAATACAGGG+AGG - chr2_4:26740891-26740910 Msa0323090:intron 40.0%
AATTTGGAAATACAGGGAGG+TGG - chr2_4:26740894-26740913 Msa0323090:intron 40.0%
AGGGTGATTCTTGCTCAAAA+GGG + chr2_4:26740974-26740993 None:intergenic 40.0%
AAGGGTGATTCTTGCTCAAA+AGG + chr2_4:26740975-26740994 None:intergenic 40.0%
CAGAAAATCGTTCAGGAATC+AGG + chr2_4:26741357-26741376 None:intergenic 40.0%
CCATTTGACCATTTCTCAGT+AGG + chr2_4:26741646-26741665 None:intergenic 40.0%
CCTACTGAGAAATGGTCAAA+TGG - chr2_4:26741643-26741662 Msa0323090:CDS 40.0%
AGATAAGCCACTTGATGCAA+AGG - chr2_4:26741959-26741978 Msa0323090:intron 40.0%
TGAGACGTTTAGCACAAAAC+AGG - chr2_4:26742080-26742099 Msa0323090:intron 40.0%
GAGACGTTTAGCACAAAACA+GGG - chr2_4:26742081-26742100 Msa0323090:intron 40.0%
GTTGGAGGAAATATAAGCTC+TGG - chr2_4:26742436-26742455 Msa0323090:intron 40.0%
AGCACCTAAAATCTCGTAGA+GGG - chr2_4:26743129-26743148 Msa0323090:intron 40.0%
! TATGCCCTCTACGAGATTTT+AGG + chr2_4:26743136-26743155 None:intergenic 40.0%
! GACTAGCTAGTGCAATAATG+TGG + chr2_4:26743392-26743411 None:intergenic 40.0%
!! GTTAAGAAACGGATTGCAAG+CGG - chr2_4:26743584-26743603 Msa0323090:intron 40.0%
! GAAATGAGAGTAATGGTGGA+TGG - chr2_4:26743621-26743640 Msa0323090:intron 40.0%
! AAGCTGAACGTTGCTTTCTT+TGG - chr2_4:26743736-26743755 Msa0323090:intron 40.0%
! GAACGTTGCTTTCTTTGGAT+TGG - chr2_4:26743741-26743760 Msa0323090:intron 40.0%
TATGGTGAAGAAAGAGCTTG+TGG - chr2_4:26744562-26744581 Msa0323090:intron 40.0%
CTTATGAGAAAGTGACGTTG+TGG + chr2_4:26744648-26744667 None:intergenic 40.0%
GTTGTCATATGTCAGTTGTG+TGG - chr2_4:26744667-26744686 Msa0323090:intron 40.0%
TGTTGAACACCATCAACAAG+GGG + chr2_4:26744961-26744980 None:intergenic 40.0%
CAACAAATGGTTGTTGCCAT+AGG - chr2_4:26744976-26744995 Msa0323090:intron 40.0%
! TCTTGAAGGTTTTCTTCGTC+AGG - chr2_4:26745011-26745030 Msa0323090:intron 40.0%
ATTACTCACACTTCGTCAAG+CGG - chr2_4:26746034-26746053 Msa0323090:intron 40.0%
!! GCACGCTCTTTTCTTGTTAT+TGG - chr2_4:26746056-26746075 Msa0323090:intron 40.0%
TAACTCATGCCAAACAACCA+CGG - chr2_4:26746464-26746483 Msa0323090:CDS 40.0%
TTTGCATATCCGTGGTTGTT+TGG + chr2_4:26746476-26746495 None:intergenic 40.0%
AACAACCACGGATATGCAAA+TGG - chr2_4:26746476-26746495 Msa0323090:CDS 40.0%
TTGAACCATTTGCATATCCG+TGG + chr2_4:26746484-26746503 None:intergenic 40.0%
TCCTACAAGTGGTTCTTGTT+GGG - chr2_4:26746548-26746567 Msa0323090:intron 40.0%
! TGAGCTTTATGTGCATGATG+AGG - chr2_4:26746672-26746691 Msa0323090:CDS 40.0%
! CAATAGACATGGGAAGGTGT+GGG - chr2_4:26740383-26740402 Msa0323090:intron 45.0%
! AATAGACATGGGAAGGTGTG+GGG - chr2_4:26740384-26740403 Msa0323090:intron 45.0%
AAGGTGTGGGGTTACAAACT+TGG - chr2_4:26740396-26740415 Msa0323090:intron 45.0%
AACATTTCCAGTGTAGCAGC+AGG + chr2_4:26740617-26740636 None:intergenic 45.0%
CACTGGAAATGTTCCCTTCT+TGG - chr2_4:26740624-26740643 Msa0323090:intron 45.0%
GGAATCTCATTGGCCAAGAA+GGG + chr2_4:26740640-26740659 None:intergenic 45.0%
TGGAATCTCATTGGCCAAGA+AGG + chr2_4:26740641-26740660 None:intergenic 45.0%
ATCAGCAGCAGCCAAAGAAA+AGG - chr2_4:26741133-26741152 Msa0323090:intron 45.0%
GATAGAGAGAGAGAGAGTGA+AGG - chr2_4:26741389-26741408 Msa0323090:intron 45.0%
AGAGAGAGAGAGTGAAGGAT+AGG - chr2_4:26741394-26741413 Msa0323090:intron 45.0%
ACGTTTAGCACAAAACAGGG+AGG - chr2_4:26742084-26742103 Msa0323090:intron 45.0%
CTGCAAGGAAAAGTCGTCTA+AGG - chr2_4:26742107-26742126 Msa0323090:intron 45.0%
!! GGTATGTTCATGGATTGGAG+TGG - chr2_4:26742409-26742428 Msa0323090:intron 45.0%
!! ATGTTCATGGATTGGAGTGG+AGG - chr2_4:26742412-26742431 Msa0323090:intron 45.0%
GAGCACCTAAAATCTCGTAG+AGG - chr2_4:26743128-26743147 Msa0323090:intron 45.0%
GCTAGTGCAATAATGTGGCA+AGG + chr2_4:26743387-26743406 None:intergenic 45.0%
! AGGAGGTGCAATGTTTGACA+TGG - chr2_4:26743518-26743537 Msa0323090:intron 45.0%
! CGTTGCTTTCTTTGGATTGG+TGG - chr2_4:26743744-26743763 Msa0323090:intron 45.0%
ATTATCTGCTGCTCTGCTAG+TGG + chr2_4:26744835-26744854 None:intergenic 45.0%
ACTAGCAGAGCAGCAGATAA+TGG - chr2_4:26744834-26744853 Msa0323090:intron 45.0%
CTAGCAGAGCAGCAGATAAT+GGG - chr2_4:26744835-26744854 Msa0323090:intron 45.0%
TAGCAGAGCAGCAGATAATG+GGG - chr2_4:26744836-26744855 Msa0323090:intron 45.0%
!! CAGCAGATAATGGGGATGTA+TGG - chr2_4:26744844-26744863 Msa0323090:intron 45.0%
! TAATGGGGATGTATGGACTG+AGG - chr2_4:26744851-26744870 Msa0323090:intron 45.0%
CAACAAGAGACTGTTGCAAC+TGG + chr2_4:26744921-26744940 None:intergenic 45.0%
TCTCTTGTTGACACCATTGC+TGG - chr2_4:26744931-26744950 Msa0323090:intron 45.0%
AAGATTGGCAAGCTTGCCTA+TGG + chr2_4:26744995-26745014 None:intergenic 45.0%
ATGCAGCCACATAGATCACA+AGG + chr2_4:26745210-26745229 None:intergenic 45.0%
TGACGTGACAACCAAAGTAG+TGG + chr2_4:26745480-26745499 None:intergenic 45.0%
GTCCTACAAGTGGTTCTTGT+TGG - chr2_4:26746547-26746566 Msa0323090:intron 45.0%
!! AATTAAATAAAACTTATATA+TGG - chr2_4:26741895-26741914 Msa0323090:intron 5.0%
CTGAGGCAATAGACATGGGA+AGG - chr2_4:26740377-26740396 Msa0323090:intron 50.0%
GCAATAGACATGGGAAGGTG+TGG - chr2_4:26740382-26740401 Msa0323090:intron 50.0%
CAGGGAGGTGGTAACAAATC+AGG - chr2_4:26740906-26740925 Msa0323090:intron 50.0%
GGAGGTGGTAACAAATCAGG+AGG - chr2_4:26740909-26740928 Msa0323090:intron 50.0%
! CATTCAAAGAGCACGCTCTC+AGG - chr2_4:26742291-26742310 Msa0323090:intron 50.0%
!! ATGGATTGGAGTGGAGGTGT+TGG - chr2_4:26742418-26742437 Msa0323090:intron 50.0%
CTGCTAGTGGCTCCAATTGT+TGG + chr2_4:26744822-26744841 None:intergenic 50.0%
GCATTCTTCACAGCAAGCAG+AGG - chr2_4:26744873-26744892 Msa0323090:intron 50.0%
CTTGTTGACACCATTGCTGG+AGG - chr2_4:26744934-26744953 Msa0323090:intron 50.0%
GGCAAGCTTGCCAATCTTGA+AGG - chr2_4:26744997-26745016 Msa0323090:intron 50.0%
CGTGACAACCAAAGTAGTGG+AGG + chr2_4:26745477-26745496 None:intergenic 50.0%
GCCCAACAAGAACCACTTGT+AGG + chr2_4:26746552-26746571 None:intergenic 50.0%
TTCCAGTGTAGCAGCAGGTC+TGG + chr2_4:26740612-26740631 None:intergenic 55.0%
CACAAAACAGGGAGGCTGCA+AGG - chr2_4:26742092-26742111 Msa0323090:intron 55.0%
!! GATTGGAGTGGAGGTGTTGG+AGG - chr2_4:26742421-26742440 Msa0323090:intron 55.0%
GCAGAGGAAGCTCTCTCACA+AGG - chr2_4:26744889-26744908 Msa0323090:intron 55.0%
AACAAGGGGTCCTCCAGCAA+TGG + chr2_4:26744947-26744966 None:intergenic 55.0%
AGCCAGACCTGCTGCTACAC+TGG - chr2_4:26740607-26740626 Msa0323090:intron 60.0%
GCTGGAGGACCCCTTGTTGA+TGG - chr2_4:26744949-26744968 Msa0323090:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 26739818 26746755 26739818 ID=Msa0323090;Name=Msa0323090
chr2_4 mRNA 26739818 26746755 26739818 ID=Msa0323090-mRNA-1;Parent=Msa0323090;Name=Msa0323090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.18|0.16|1|1|1|12|222|493
chr2_4 exon 26739818 26740127 26739818 ID=Msa0323090-mRNA-1:exon:9302;Parent=Msa0323090-mRNA-1
chr2_4 exon 26740438 26740580 26740438 ID=Msa0323090-mRNA-1:exon:9301;Parent=Msa0323090-mRNA-1
chr2_4 exon 26741541 26741762 26741541 ID=Msa0323090-mRNA-1:exon:9300;Parent=Msa0323090-mRNA-1
chr2_4 exon 26742782 26743053 26742782 ID=Msa0323090-mRNA-1:exon:9299;Parent=Msa0323090-mRNA-1
chr2_4 exon 26744116 26744164 26744116 ID=Msa0323090-mRNA-1:exon:9298;Parent=Msa0323090-mRNA-1
chr2_4 exon 26744261 26744338 26744261 ID=Msa0323090-mRNA-1:exon:9297;Parent=Msa0323090-mRNA-1
chr2_4 exon 26744438 26744497 26744438 ID=Msa0323090-mRNA-1:exon:9296;Parent=Msa0323090-mRNA-1
chr2_4 exon 26744593 26744637 26744593 ID=Msa0323090-mRNA-1:exon:9295;Parent=Msa0323090-mRNA-1
chr2_4 exon 26745419 26745664 26745419 ID=Msa0323090-mRNA-1:exon:9294;Parent=Msa0323090-mRNA-1
chr2_4 exon 26745897 26745976 26745897 ID=Msa0323090-mRNA-1:exon:9293;Parent=Msa0323090-mRNA-1
chr2_4 exon 26746454 26746542 26746454 ID=Msa0323090-mRNA-1:exon:9292;Parent=Msa0323090-mRNA-1
chr2_4 exon 26746646 26746755 26746646 ID=Msa0323090-mRNA-1:exon:9291;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26746646 26746755 26746646 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26746454 26746542 26746454 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26745897 26745976 26745897 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26745419 26745664 26745419 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26744593 26744637 26744593 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26744438 26744497 26744438 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26744261 26744338 26744261 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26744116 26744164 26744116 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26742782 26743053 26742782 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26741541 26741762 26741541 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26740438 26740580 26740438 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 CDS 26740040 26740127 26740040 ID=Msa0323090-mRNA-1:cds;Parent=Msa0323090-mRNA-1
chr2_4 three_prime_UTR 26739818 26740039 26739818 ID=Msa0323090-mRNA-1:three_prime_utr;Parent=Msa0323090-mRNA-1
Gene Sequence

>Msa0323090

ATGGCGAGCCAAAGAATAGGAGAACTTGATTTTTCTGAGACAGGACATTCAACTCATCATGTCCCTTATGGAATTCATCATAGGATTAATAATCCTTCATCAAGTTTAATGAATGAAGAATCTGGTTTTGATTTTGGGGAGCTAGAAGAAACAATTGTTTTGCAAGGAGTTAAGAATGGAAATGATGAAACAAAAGCATCTTTTTTCACAGCCAGACCTGCTGCTACACTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCATCAAACCTCAACAGTAGGAGGTGGTAACAAATCAGGAGGTGAAAGCAGTGATTCAGCACTATCAAGCAAAAATGAGAACCCTTTTGAGCAAGAATCACCCTTAAGTAAAAAAGCATCTTCTTTTTCATCAGATCATAATAATATGGATCAGCAGAATCTTCAGCTACAACAACAGAAGATAATAATATCAAATGATGCTTCTGCTGCTATAAGAACAGCCTCTTCATCACAGAATCAAATATCAGCAGCAGCCAAAGAAAAGAAAAAAGGAGCTGGTTCAACATCAGATAAGCCACTTGATGCAAAGACATTGAGACGTTTAGCACAAAACAGGGAGGCTGCAAGGAAAAGTCGTCTAAGGAAAAAGGCTTATGTGCAGCAACTTGAGTCAAGTAGATTAAAGCTTACACAATTGGAACAAGACATTCAAAGAGCACGCTCTCAGGGTATGTTCATGGATTGGAGTGGAGGTGTTGGAGGAAATATAAGCTCTGGAGGTGCAATGTTTGACATGGAATATGGAAGATGGCTAGAAGAAGACAACCGTTTATTAACGGAGTTAAGAAACGGATTGCAAGCGGCGTTAACAGATAATGAAATGAGAGTAATGGTGGATGGATATTTGTGTCATTATGATCAAATATTTAGACTCAAAGGTGTCACTGCTAAATCAGACGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGCTTTCTTTGGATTGGTGGTTTTAGACCCTCTGAAATTATCATGATGTTGATCCAACAATTGGAGCCACTAGCAGAGCAGCAGATAATGGGGATGTATGGACTGAGGCATTCTTCACAGCAAGCAGAGGAAGCTCTCTCACAAGGACTTGACCAGTTGCAACAGTCTCTTGTTGACACCATTGCTGGAGGACCCCTTGTTGATGGTGTTCAACAAATGGTTGTTGCCATAGGCAAGCTTGCCAATCTTGAAGGTTTTCTTCGTCAGGCTGATAACTTGAGGCAACAAACTCTTCACCAATTATGTCGATTACTCACACTTCGTCAAGCGGCACGCTCTTTTCTTGTTATTGGAGAATACTATGGACGACTTAGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGAACATGATCAGTGATGATAACTCATGCCAAACAACCACGGATATGCAAATGGTTCAACCTTCTCAGAATCATTTCACAAATTTCTGA

Protein sequence

>Msa0323090

MASQRIGELDFSETGHSTHHVPYGIHHRINNPSSSLMNEESGFDFGELEETIVLQGVKNGNDETKASFFTARPAATLEMFPSWPMRFHQTSTVGGGNKSGGESSDSALSSKNENPFEQESPLSKKASSFSSDHNNMDQQNLQLQQQKIIISNDASAAIRTASSSQNQISAAAKEKKKGAGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDIQRARSQGMFMDWSGGVGGNISSGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAIGKLANLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRENMISDDNSCQTTTDMQMVQPSQNHFTNF*