AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1068080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068080 MtrunA17_Chr7g0249621 97.266 695 9 3 1 691 1 689 0.0 1398
Msa1068080 MtrunA17_Chr4g0032631 53.269 413 121 10 103 508 51 398 6.53e-130 395
Msa1068080 MtrunA17_Chr2g0328971 65.878 296 71 4 162 455 92 359 2.11e-127 387
Msa1068080 MtrunA17_Chr8g0343851 50.108 463 177 11 5 447 3 431 9.25e-124 380
Msa1068080 MtrunA17_Chr4g0072291 87.310 197 21 2 254 447 149 344 1.02e-121 372
Msa1068080 MtrunA17_Chr3g0135161 68.635 271 73 5 192 460 247 507 2.04e-116 363
Msa1068080 MtrunA17_Chr1g0152161 51.961 408 137 9 65 463 158 515 8.97e-116 362
Msa1068080 MtrunA17_Chr4g0054351 77.073 205 44 1 253 454 299 503 2.62e-106 337
Msa1068080 MtrunA17_Chr5g0412151 76.549 226 38 4 227 449 198 411 5.32e-106 332
Msa1068080 MtrunA17_Chr5g0400871 76.263 198 44 1 260 454 245 442 4.38e-104 328
Msa1068080 MtrunA17_Chr4g0073521 65.979 194 60 2 235 428 24 211 2.58e-84 270
Msa1068080 MtrunA17_Chr6g0452911 59.624 213 74 2 226 428 25 235 4.84e-79 257
Msa1068080 MtrunA17_Chr7g0216601 69.231 169 49 1 263 428 64 232 8.02e-78 254
Msa1068080 MtrunA17_Chr8g0355191 67.630 173 56 0 263 435 54 226 2.99e-76 251
Msa1068080 MtrunA17_Chr8g0367311 74.510 153 38 1 301 453 22 173 6.43e-75 241
Msa1068080 MtrunA17_Chr4g0002011 67.039 179 53 2 253 428 28 203 2.01e-71 235
Msa1068080 MtrunA17_Chr8g0355181 68.072 166 53 0 263 428 55 220 7.30e-70 233
Msa1068080 MtrunA17_Chr8g0362541 60.914 197 63 1 246 428 51 247 9.68e-69 231
Msa1068080 MtrunA17_Chr2g0305821 62.319 138 48 2 236 373 23 156 5.57e-45 158
Msa1068080 MtrunA17_Chr7g0257361 61.832 131 42 2 262 389 55 180 1.22e-39 151
Msa1068080 MtrunA17_Chr5g0401891 48.990 198 86 5 244 437 128 314 1.05e-38 150
Msa1068080 MtrunA17_Chr4g0053181 52.121 165 65 4 268 429 177 330 2.50e-38 149
Msa1068080 MtrunA17_Chr7g0263581 43.719 199 96 4 268 458 140 330 5.72e-38 147
Msa1068080 MtrunA17_Chr4g0030191 45.556 180 82 5 268 444 132 298 2.30e-35 140
Msa1068080 MtrunA17_Chr2g0325911 45.455 165 61 5 268 429 135 273 1.33e-28 119
Msa1068080 MtrunA17_Chr2g0305831 74.576 59 15 0 370 428 1 59 2.99e-24 101
Msa1068080 MtrunA17_Chr8g0367321 63.492 63 20 1 243 302 131 193 1.36e-20 90.5
Msa1068080 MtrunA17_Chr3g0126151 43.158 95 53 1 312 406 47 140 1.72e-20 88.2
Msa1068080 MtrunA17_Chr1g0170761 39.024 123 61 4 264 383 134 245 1.22e-12 70.1
Msa1068080 MtrunA17_Chr5g0432821 44.304 79 43 1 357 435 114 191 6.01e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068080 AT5G17430.1 49.910 555 168 20 1 534 1 466 7.87e-142 427
Msa1068080 AT5G17430.2 59.635 384 89 10 167 534 71 404 6.36e-134 405
Msa1068080 AT1G51190.1 61.207 348 102 9 112 455 64 382 4.60e-129 394
Msa1068080 AT3G20840.1 72.388 268 55 4 192 455 121 373 8.30e-129 393
Msa1068080 AT5G57390.2 79.111 225 33 4 223 443 49 263 8.54e-121 368
Msa1068080 AT5G57390.1 79.111 225 33 4 223 443 167 381 1.20e-119 369
Msa1068080 AT1G72570.1 57.012 328 106 7 140 446 92 405 1.79e-113 348
Msa1068080 AT4G37750.1 51.880 399 122 10 95 447 92 466 2.59e-110 345
Msa1068080 AT5G10510.2 85.641 195 27 1 255 449 218 411 4.33e-108 338
Msa1068080 AT5G10510.7 84.343 198 27 2 255 449 218 414 7.26e-106 333
Msa1068080 AT5G10510.5 84.343 198 27 2 255 449 218 414 7.26e-106 333
Msa1068080 AT5G10510.1 84.343 198 27 2 255 449 241 437 1.01e-105 333
Msa1068080 AT5G10510.6 84.343 198 27 2 255 449 256 452 1.48e-105 333
Msa1068080 AT5G10510.4 84.343 198 27 2 255 449 256 452 1.48e-105 333
Msa1068080 AT5G65510.4 80.102 196 35 2 255 447 161 355 5.70e-102 319
Msa1068080 AT5G65510.2 80.102 196 35 2 255 447 219 413 6.17e-102 321
Msa1068080 AT5G65510.1 80.102 196 35 2 255 447 219 413 6.17e-102 321
Msa1068080 AT5G10510.3 76.147 218 28 2 255 449 256 472 2.33e-101 323
Msa1068080 AT5G65510.3 84.932 146 19 1 255 397 161 306 1.04e-86 275
Msa1068080 AT3G54320.1 63.736 182 62 2 263 441 61 241 8.94e-67 226
Msa1068080 AT3G54320.3 63.736 182 62 2 263 441 61 241 9.30e-67 226
Msa1068080 AT1G79700.2 69.822 169 48 1 263 428 48 216 2.37e-63 213
Msa1068080 AT1G16060.1 63.731 193 64 2 242 428 30 222 2.66e-63 214
Msa1068080 AT1G79700.1 65.680 169 45 2 263 428 48 206 8.82e-56 192
Msa1068080 AT3G54320.4 69.531 128 39 0 301 428 36 163 1.17e-48 175
Msa1068080 AT3G54320.5 69.531 128 39 0 301 428 36 163 1.17e-48 175
Msa1068080 AT1G79700.4 70.312 128 38 0 301 428 7 134 1.76e-44 159
Msa1068080 AT1G79700.3 70.312 128 38 0 301 428 13 140 1.95e-44 159
Msa1068080 AT1G16060.3 66.418 134 45 0 295 428 19 152 9.84e-43 156
Msa1068080 AT4G36920.1 49.495 198 85 5 247 440 110 296 5.80e-40 152
Msa1068080 AT4G36920.2 49.495 198 85 5 247 440 110 296 5.80e-40 152
Msa1068080 AT2G41710.1 60.606 132 44 2 260 388 63 189 4.66e-39 150
Msa1068080 AT2G41710.4 60.606 132 44 2 260 388 63 189 9.08e-39 150
Msa1068080 AT2G41710.2 58.394 137 44 3 260 388 63 194 9.31e-37 143
Msa1068080 AT2G28550.3 49.390 164 69 4 268 428 154 306 5.49e-36 142
Msa1068080 AT5G67180.2 47.701 174 77 4 268 438 97 259 1.01e-35 137
Msa1068080 AT5G67180.1 47.701 174 77 4 268 438 97 259 4.32e-35 137
Msa1068080 AT5G67180.3 46.512 172 84 3 268 439 97 260 5.45e-35 134
Msa1068080 AT2G41710.3 47.904 167 44 3 260 388 63 224 1.25e-32 132
Msa1068080 AT1G16060.2 71.591 88 25 0 341 428 1 88 1.51e-31 122
Msa1068080 AT1G16060.4 71.591 88 25 0 341 428 1 88 1.51e-31 122
Msa1068080 AT1G16060.6 71.591 88 25 0 341 428 1 88 1.51e-31 122
Msa1068080 AT1G16060.5 71.591 88 25 0 341 428 1 88 1.51e-31 122
Msa1068080 AT3G54320.2 63.366 101 36 1 341 441 1 100 9.13e-31 122
Msa1068080 AT2G28550.4 47.143 140 60 4 268 404 154 282 5.36e-28 115
Msa1068080 AT2G28550.1 45.122 164 61 5 268 428 154 291 5.83e-28 118
Msa1068080 AT5G67180.4 44.366 142 71 3 268 409 97 230 5.84e-26 107
Msa1068080 AT2G28550.2 46.825 126 53 4 268 390 154 268 1.35e-23 101
Msa1068080 AT2G28550.6 46.825 126 53 4 268 390 154 268 1.35e-23 101
Msa1068080 AT2G39250.2 41.071 112 53 3 268 376 109 210 2.93e-21 94.0
Msa1068080 AT2G28550.5 45.312 128 54 2 301 428 14 125 3.64e-21 94.7
Msa1068080 AT2G39250.1 41.071 112 53 3 268 376 109 210 6.99e-21 94.7
Msa1068080 AT5G60120.6 38.509 161 70 6 264 421 157 291 3.40e-17 85.5
Msa1068080 AT5G60120.1 38.509 161 70 6 264 421 157 291 3.71e-17 85.5
Msa1068080 AT5G60120.2 38.509 161 70 6 264 421 157 291 4.96e-17 85.1
Msa1068080 AT5G60120.4 43.411 129 59 4 264 389 157 274 6.33e-17 84.0
Msa1068080 AT5G60120.3 43.411 129 59 4 264 389 157 274 6.33e-17 84.0
Msa1068080 AT5G60120.5 43.411 129 59 4 264 389 157 274 6.33e-17 84.0
Msa1068080 AT1G16060.7 77.193 57 13 0 372 428 10 66 9.28e-17 79.3
Msa1068080 AT3G54990.2 43.396 106 47 3 268 370 123 218 4.93e-15 75.9
Msa1068080 AT3G54990.1 43.396 106 47 3 268 370 123 218 1.20e-14 76.3

Find 149 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGGCTTGTTCTGTTAAA+TGG 0.095178 7_2:+63067383 None:intergenic
TATTGTTGCTTCTTTGATTT+TGG 0.129662 7_2:+63066981 None:intergenic
GGATCTAATTCTGTTGTTTA+TGG 0.168865 7_2:-63067076 Msa1068080:CDS
GGTTATTGTTGTTCATATTT+TGG 0.176947 7_2:+63069891 None:intergenic
CAAAGAAGCAACAATAATTT+TGG 0.188537 7_2:-63066974 Msa1068080:CDS
CAAACGGTGGCTTCTCGTTT+TGG 0.188561 7_2:-63070425 Msa1068080:CDS
CCTTGTTACTCCTCGGTAAA+TGG 0.210629 7_2:+63068218 None:intergenic
CCTTGTTACACCACGGTAAA+TGG 0.220419 7_2:+63069394 None:intergenic
ATTTGGCAGCACTAAAATAT+TGG 0.237264 7_2:-63068791 Msa1068080:CDS
AACAATACTCACAATTTCTT+TGG 0.250983 7_2:-63067148 Msa1068080:CDS
CTGTTGATCAAGGATCAAAT+TGG 0.252268 7_2:-63066844 Msa1068080:CDS
TGCATTTGTTGCTGCATAAA+TGG 0.259450 7_2:+63067366 None:intergenic
GGTGGAGATCATGGTGGTTA+TGG 0.278181 7_2:-63067052 Msa1068080:CDS
TCAGAACCTGAGATTTCATT+AGG 0.293320 7_2:+63070395 None:intergenic
CAACAACCAAAACCTACTAT+TGG 0.300403 7_2:-63069930 Msa1068080:CDS
TTTGGCAGCACTAAAATATT+GGG 0.305185 7_2:-63068790 Msa1068080:CDS
AGAAAATCCATTGATACATT+TGG 0.320046 7_2:-63069428 Msa1068080:CDS
CAGCAACAAATGCATCTAAT+TGG 0.322210 7_2:-63067357 Msa1068080:CDS
GCTTCCATGGATAATAGTTC+TGG 0.326230 7_2:-63067097 Msa1068080:CDS
TATGGTCTTGCTCAGTTCTA+TGG 0.330974 7_2:+63067425 None:intergenic
ATGGCCTCTATGAACTTGTT+AGG 0.336794 7_2:-63070491 Msa1068080:CDS
GAGAGTGAGATTAAGGGATT+TGG 0.337891 7_2:-63066950 Msa1068080:CDS
TAATGTGCTGCTCTCAAGTA+TGG 0.346258 7_2:+63067522 None:intergenic
TGTGTGGAAAGCTTCATAAA+TGG 0.358443 7_2:+63070295 None:intergenic
CGAGCTTTGGTTGTGCTTGT+TGG 0.361890 7_2:+63069870 None:intergenic
AATCATGTGAATGTTGATAT+TGG 0.362393 7_2:-63067448 Msa1068080:CDS
GATATTCATCAACTACAGTT+AGG 0.380988 7_2:-63067181 Msa1068080:CDS
CACTTTCAACTACACTGGTT+TGG 0.382624 7_2:+63069459 None:intergenic
ATGTTCCCAATAGTAGGTTT+TGG 0.383308 7_2:+63069924 None:intergenic
AAAGCTTCATAAATGGAAAA+AGG 0.383369 7_2:+63070302 None:intergenic
GCTAGGATTGGAAGAGTTGC+AGG 0.384571 7_2:-63067883 Msa1068080:CDS
CAACTACAGAATTATCCTTA+TGG 0.402202 7_2:-63067277 Msa1068080:CDS
ACAAGTAACAATAACTCAAT+AGG 0.403671 7_2:-63069707 Msa1068080:CDS
CTTGCTGCTTGTGCATGATA+AGG 0.405059 7_2:+63066896 None:intergenic
AATGGCTTGTTCTGTTAAAT+GGG 0.406601 7_2:+63067384 None:intergenic
AACAACCAAAACCTACTATT+GGG 0.407661 7_2:-63069929 Msa1068080:CDS
CAGAACCTGAGATTTCATTA+GGG 0.409124 7_2:+63070396 None:intergenic
GAATTGATTGAAGGCATAGA+TGG 0.410587 7_2:-63069210 Msa1068080:intron
GAAGATATGAAGCTCACCTT+TGG 0.414893 7_2:-63069183 Msa1068080:CDS
ACCGTTTGATCTTGAGTTGA+TGG 0.416817 7_2:+63070440 None:intergenic
TTTGGTGAGAGTGAGATTAA+GGG 0.417815 7_2:-63066956 Msa1068080:CDS
GGTGACGGTGGTGGTGGTGA+TGG 0.418439 7_2:-63069734 Msa1068080:CDS
CCAGCGCCACAGGATGCTTC+CGG 0.419126 7_2:+63069758 None:intergenic
GTTTATGGTGGTGGAGATCA+TGG 0.419499 7_2:-63067061 Msa1068080:CDS
CGCTTTGCAGCACCACCAAT+TGG 0.426039 7_2:+63067499 None:intergenic
GACATCATCAACATGGTAGA+TGG 0.429729 7_2:-63067909 Msa1068080:CDS
GTACTCAAACTCAAAAGCTT+TGG 0.432762 7_2:-63067255 Msa1068080:CDS
CATGGTGGTTATGGAGGAAA+TGG 0.438514 7_2:-63067043 Msa1068080:CDS
CCATCATTTGCAATAGCCAT+TGG 0.439632 7_2:+63067007 None:intergenic
GCTGGTGGTGACGGTGGTGG+TGG 0.442442 7_2:-63069740 Msa1068080:CDS
AATTCTGTTGTTTATGGTGG+TGG 0.443451 7_2:-63067070 Msa1068080:CDS
GGCGCTGGTGGTGACGGTGG+TGG 0.445823 7_2:-63069743 Msa1068080:CDS
AAGATATGAAGCTCACCTTT+GGG 0.446101 7_2:-63069182 Msa1068080:CDS
GGCAGCTAGAGCCTATGATT+TGG 0.446802 7_2:-63068808 Msa1068080:CDS
ATTCTGTAGTTGCATGTTGT+TGG 0.446869 7_2:+63067288 None:intergenic
TCTTTGTCCAAATGTATCAA+TGG 0.448794 7_2:+63069421 None:intergenic
CCGGAAGCATCCTGTGGCGC+TGG 0.451035 7_2:-63069758 Msa1068080:CDS
TCCTGTGGCGCTGGTGGTGA+CGG 0.457671 7_2:-63069749 Msa1068080:CDS
ATCTAGTACAACTGCAGTTG+TGG 0.462528 7_2:+63069487 None:intergenic
AGGTTATGACAAAGAAGAAA+AGG 0.471219 7_2:-63068829 Msa1068080:CDS
AGAGAGACATTGGTAGTCCT+TGG 0.480632 7_2:+63066794 None:intergenic
TGTTGATCAAGGATCAAATT+GGG 0.482329 7_2:-63066843 Msa1068080:CDS
TTAGCTTACTGAAAGTTCCT+AGG 0.482351 7_2:+63067845 None:intergenic
GAGAGCAGCACATTACCAAT+TGG 0.487985 7_2:-63067514 Msa1068080:CDS
TTTACCGACCATCATGAATA+CGG 0.492970 7_2:-63069824 Msa1068080:CDS
CCAATGGCTATTGCAAATGA+TGG 0.493694 7_2:-63067007 Msa1068080:CDS
CTGATGAGGTGGAAGGTGTA+AGG 0.495711 7_2:+63069781 None:intergenic
AACAACATTCACACCACTCA+AGG 0.496373 7_2:-63070269 Msa1068080:intron
GATTGAAGGCATAGATGGAC+AGG 0.498328 7_2:-63069205 Msa1068080:intron
TGCATGATGTTCCCAATAGT+AGG 0.502983 7_2:+63069918 None:intergenic
CAGGATGCTTCCGGCTGATG+AGG 0.503669 7_2:+63069767 None:intergenic
AACAACAATAACAATGAAAG+TGG 0.507141 7_2:-63069632 Msa1068080:CDS
GGTAGATGGCAAGCTAGGAT+TGG 0.507927 7_2:-63067895 Msa1068080:CDS
TTTACAAAATATCATGAGCA+TGG 0.510195 7_2:-63067125 Msa1068080:CDS
AGGAGGACAAAGAGAGACAT+TGG 0.511641 7_2:+63066784 None:intergenic
GAGCATGGATTCTGCTTCCA+TGG 0.513611 7_2:-63067110 Msa1068080:CDS
TTCAACCCTAATGAAATCTC+AGG 0.515786 7_2:-63070401 Msa1068080:CDS
GTTGATGGATGTTGTTCTTG+TGG 0.519936 7_2:+63070455 None:intergenic
TCTAATTCTGTTGTTTATGG+TGG 0.520329 7_2:-63067073 Msa1068080:CDS
TCCATCAACTCAAGATCAAA+CGG 0.521228 7_2:-63070441 Msa1068080:CDS
CACTCAAGAAGAGGCAGCAG+AGG 0.522745 7_2:-63067623 Msa1068080:CDS
TGACTGTGAGCCAGTACTCA+TGG 0.522920 7_2:+63069583 None:intergenic
CTATCACTTTCCATGAGTAC+TGG 0.523226 7_2:-63069593 Msa1068080:CDS
ACCGTCACCACCAGCGCCAC+AGG 0.525901 7_2:+63069748 None:intergenic
ATCTCAGGTTCTGATGTTCA+AGG 0.526778 7_2:-63070386 Msa1068080:CDS
GGTGGTTATGGAGGAAATGG+TGG 0.526912 7_2:-63067040 Msa1068080:CDS
TCTAGTACAACTGCAGTTGT+GGG 0.529325 7_2:+63069488 None:intergenic
ATATTCATCAACTACAGTTA+GGG 0.529923 7_2:-63067180 Msa1068080:CDS
CCATTTACCGTGGTGTAACA+AGG 0.530421 7_2:-63069394 Msa1068080:intron
CAACAATTATCTGTTGATCA+AGG 0.532166 7_2:-63066854 Msa1068080:CDS
TTGGCATTGTAATGATGATG+TGG 0.537975 7_2:+63067307 None:intergenic
GTAGTCCTTGGAGCAAGTGT+TGG 0.539572 7_2:+63066806 None:intergenic
GATGATGTGGTTGTTGCTGT+TGG 0.542188 7_2:+63067320 None:intergenic
AAGTGTTGTTGATGATGCTA+TGG 0.542471 7_2:+63067407 None:intergenic
ATCACATTTGCATTGAGAAG+AGG 0.545455 7_2:+63069548 None:intergenic
AAATGTACCTTGTTACTCCT+CGG 0.545690 7_2:+63068211 None:intergenic
CACAGCACTTTCAACTACAC+TGG 0.549624 7_2:+63069454 None:intergenic
GGAGATCATGGTGGTTATGG+AGG 0.550320 7_2:-63067049 Msa1068080:CDS
GCAAGTGTTGGAATAGCAGT+TGG 0.551281 7_2:+63066818 None:intergenic
GACAATAGTTGTAGAAGAGA+GGG 0.552085 7_2:-63069160 Msa1068080:CDS
AGGGGCAGACTCGCAAAGGA+AGG 0.556032 7_2:-63069141 Msa1068080:CDS
TGTGAATGTTGTTATTTGTG+TGG 0.561378 7_2:+63070279 None:intergenic
GAGTGGTGAGATTTCATCAT+CGG 0.562716 7_2:-63069525 Msa1068080:CDS
GATGCTTCCGGCTGATGAGG+TGG 0.563493 7_2:+63069770 None:intergenic
GAAGCATCCTGTGGCGCTGG+TGG 0.570788 7_2:-63069755 Msa1068080:CDS
TTCTACAACTATTGTCCCAA+AGG 0.572108 7_2:+63069167 None:intergenic
ACACCTTCCACCTCATCAGC+CGG 0.572285 7_2:-63069777 Msa1068080:CDS
AGATCCAGAACTATTATCCA+TGG 0.572634 7_2:+63067093 None:intergenic
AACATGGTAGATGGCAAGCT+AGG 0.575560 7_2:-63067900 Msa1068080:CDS
TATTCATGCAACAAAGTGAA+AGG 0.582944 7_2:+63066764 None:intergenic
GGACAATAGTTGTAGAAGAG+AGG 0.583749 7_2:-63069161 Msa1068080:CDS
GGCAGCAGAGGCATATGATG+TGG 0.586081 7_2:-63067611 Msa1068080:CDS
TGCAAAGCGTTTAAAAGACA+TGG 0.586229 7_2:-63067485 Msa1068080:CDS
AGCAGCACATTACCAATTGG+TGG 0.591768 7_2:-63067511 Msa1068080:CDS
CCAAAGCTCGAAAACTTCCT+CGG 0.593046 7_2:-63069857 Msa1068080:CDS
AGAGAGGGGCAGACTCGCAA+AGG 0.594516 7_2:-63069145 Msa1068080:CDS
CTATTCCAACACTTGCTCCA+AGG 0.594901 7_2:-63066811 Msa1068080:CDS
GAAACCTAACAAGTTCATAG+AGG 0.596391 7_2:+63070487 None:intergenic
AAGAAATGAAGCACATGACA+AGG 0.607294 7_2:-63068411 Msa1068080:CDS
TGTGGCGCTGGTGGTGACGG+TGG 0.610630 7_2:-63069746 Msa1068080:CDS
TATTGACACAGGAAAAGTAG+TGG 0.611077 7_2:-63068258 Msa1068080:intron
TTGGCAGCACTAAAATATTG+GGG 0.612951 7_2:-63068789 Msa1068080:CDS
AGTATGTTGCGTCATTGAGA+AGG 0.616585 7_2:-63068384 Msa1068080:intron
TGCTACCACCGTATTCATGA+TGG 0.619805 7_2:+63069816 None:intergenic
TGATCAACAGATAATTGTTG+TGG 0.624333 7_2:+63066857 None:intergenic
CCATTTACCGAGGAGTAACA+AGG 0.628541 7_2:-63068218 Msa1068080:intron
CTTATCATGCACAAGCAGCA+AGG 0.629083 7_2:-63066895 Msa1068080:CDS
CATCAGCCGGAAGCATCCTG+TGG 0.636585 7_2:-63069764 Msa1068080:CDS
CTTCCGGCTGATGAGGTGGA+AGG 0.639887 7_2:+63069774 None:intergenic
TGGTGGATATATGATTCCAA+TGG 0.641072 7_2:-63067023 Msa1068080:CDS
GTGGCAGCTATAAAATTCAG+AGG 0.650585 7_2:-63067592 Msa1068080:CDS
CAGACTCGCAAAGGAAGGCA+AGG 0.652221 7_2:-63069136 Msa1068080:intron
TATGGTGGTGGAGATCATGG+TGG 0.659784 7_2:-63067058 Msa1068080:CDS
TCATGCAACAAAGTGAAAGG+AGG 0.660215 7_2:+63066767 None:intergenic
ACAATAGTTGTAGAAGAGAG+GGG 0.663901 7_2:-63069159 Msa1068080:CDS
GAAAGGTTGAGTGAATGATG+AGG 0.665325 7_2:+63070329 None:intergenic
GGCAACAAAGATCTCTACCT+AGG 0.670359 7_2:-63067862 Msa1068080:CDS
CGTGGTGCATCCATTTACCG+AGG 0.677035 7_2:-63068228 Msa1068080:CDS
CTCAATGCAAATGTGATGAG+TGG 0.677659 7_2:-63069542 Msa1068080:CDS
AAGCTCGAAAACTTCCTCGG+TGG 0.682363 7_2:-63069854 Msa1068080:CDS
CAAAGAACTTCCATTTACCG+TGG 0.683820 7_2:-63069404 Msa1068080:CDS
TAGAGAACCTTGTTACACCA+CGG 0.689510 7_2:+63069387 None:intergenic
AGTACAACTGCAGTTGTGGG+TGG 0.690635 7_2:+63069491 None:intergenic
GATTGCAGACATCATCAACA+TGG 0.696140 7_2:-63067916 Msa1068080:intron
GAAAGAAATGAAACCTTGAG+TGG 0.697848 7_2:+63070256 None:intergenic
ACCACCGTATTCATGATGGT+CGG 0.701815 7_2:+63069820 None:intergenic
ACCGACCATCATGAATACGG+TGG 0.718644 7_2:-63069821 Msa1068080:CDS
ATCAACTCAAGATCAAACGG+TGG 0.736375 7_2:-63070438 Msa1068080:CDS
CGGTAAAAGAGTGTCCACCG+AGG 0.771614 7_2:+63069840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAGTATACATTA+GGG + chr7_2:63068165-63068184 None:intergenic 10.0%
!!! AAAAAAAAAAAGTATACATT+AGG + chr7_2:63068166-63068185 None:intergenic 10.0%
!! AATAGATAAGAAGAAAAATA+AGG + chr7_2:63067090-63067109 None:intergenic 15.0%
!!! ATCTAAAAATATTTGAGTTT+TGG + chr7_2:63067255-63067274 None:intergenic 15.0%
!!! AACTTTTTATTTTTTCAGAT+TGG - chr7_2:63067290-63067309 Msa1068080:CDS 15.0%
!!! ATAAGATTCTTTGAAATAAT+TGG - chr7_2:63068329-63068348 Msa1068080:intron 15.0%
!! TATATTATCACAATGAATTA+AGG - chr7_2:63068552-63068571 Msa1068080:intron 15.0%
!!! TATAAAGTTTTGCATTATAA+GGG + chr7_2:63068729-63068748 None:intergenic 15.0%
!!! ATATAAAGTTTTGCATTATA+AGG + chr7_2:63068730-63068749 None:intergenic 15.0%
!! ATTAAATTCGATTAAAATTG+TGG - chr7_2:63069247-63069266 Msa1068080:intron 15.0%
!! AAATATATATACTATTGGAT+TGG + chr7_2:63069543-63069562 None:intergenic 15.0%
!!! ATTTTTGCTTTATTTATATC+TGG + chr7_2:63069576-63069595 None:intergenic 15.0%
!!! TTTTTCTTGAGGAAATTAAT+TGG + chr7_2:63067039-63067058 None:intergenic 20.0%
!!! ACTAGTAATTTTTTTTCTTG+AGG + chr7_2:63067050-63067069 None:intergenic 20.0%
!!! TTTTATTTTTTCAGATTGGA+AGG - chr7_2:63067294-63067313 Msa1068080:CDS 20.0%
!! GTTTATCTATGATAAAAACA+TGG - chr7_2:63067569-63067588 Msa1068080:CDS 20.0%
!!! AAGTTCTTTTTTCTTCAAAA+TGG + chr7_2:63067967-63067986 None:intergenic 20.0%
!!! ATTTTGAAGAAAAAAGAACT+TGG - chr7_2:63067966-63067985 Msa1068080:intron 20.0%
!!! AATTTACTTTTCATTGTACA+TGG + chr7_2:63068666-63068685 None:intergenic 20.0%
!! AAATTAATTTCCTCATTTGA+TGG - chr7_2:63068681-63068700 Msa1068080:intron 20.0%
!!! ATAAAGTTTTGCATTATAAG+GGG + chr7_2:63068728-63068747 None:intergenic 20.0%
!! TGATAACAACTTATTGATAT+TGG - chr7_2:63068757-63068776 Msa1068080:intron 20.0%
!! TTAATTGATATTATTGACAC+AGG - chr7_2:63068985-63069004 Msa1068080:intron 20.0%
!!! AATTGCTATTGAAATAACTT+CGG - chr7_2:63069184-63069203 Msa1068080:CDS 20.0%
!! TTTATCTATGTTAAAATGTG+AGG + chr7_2:63069481-63069500 None:intergenic 20.0%
!!! AAGTGATCATCAATTATTTT+AGG - chr7_2:63069608-63069627 Msa1068080:CDS 20.0%
!!! TTTGGTTATGAAAATGTTTT+TGG - chr7_2:63070322-63070341 Msa1068080:CDS 20.0%
!!! TTGGTTATGAAAATGTTTTT+GGG - chr7_2:63070323-63070342 Msa1068080:CDS 20.0%
! AAAGCTTCATAAATGGAAAA+AGG + chr7_2:63066955-63066974 None:intergenic 25.0%
!!! GGTTATTGTTGTTCATATTT+TGG + chr7_2:63067366-63067385 None:intergenic 25.0%
! ACAAGTAACAATAACTCAAT+AGG - chr7_2:63067547-63067566 Msa1068080:CDS 25.0%
!!! TTATTGTTGTTGTTGTTTTC+TGG + chr7_2:63067613-63067632 None:intergenic 25.0%
! AACAACAATAACAATGAAAG+TGG - chr7_2:63067622-63067641 Msa1068080:CDS 25.0%
!!! AATGTATCAATGGATTTTCT+AGG + chr7_2:63067826-63067845 None:intergenic 25.0%
! AGAAAATCCATTGATACATT+TGG - chr7_2:63067826-63067845 Msa1068080:intron 25.0%
! ATGGCAAAGAAAATACTTAT+AGG + chr7_2:63067948-63067967 None:intergenic 25.0%
!!! TATTTTTTTGAGATGCATGA+TGG - chr7_2:63068006-63068025 Msa1068080:intron 25.0%
!!! GTGTTAAAATTTGTTGATGT+TGG - chr7_2:63068384-63068403 Msa1068080:intron 25.0%
! CAAATTAGTAATAGTTCATG+TGG + chr7_2:63068916-63068935 None:intergenic 25.0%
! AATTCATGCTCAATAAACTA+AGG + chr7_2:63068948-63068967 None:intergenic 25.0%
!!! CTTTACTATTGGTCTTTATT+TGG + chr7_2:63069071-63069090 None:intergenic 25.0%
! AATCATGTGAATGTTGATAT+TGG - chr7_2:63069806-63069825 Msa1068080:CDS 25.0%
! ATATTCATCAACTACAGTTA+GGG - chr7_2:63070074-63070093 Msa1068080:intron 25.0%
! AACAATACTCACAATTTCTT+TGG - chr7_2:63070106-63070125 Msa1068080:intron 25.0%
! TTTACAAAATATCATGAGCA+TGG - chr7_2:63070129-63070148 Msa1068080:intron 25.0%
!!! TATTGTTGCTTCTTTGATTT+TGG + chr7_2:63070276-63070295 None:intergenic 25.0%
!! CAAAGAAGCAACAATAATTT+TGG - chr7_2:63070280-63070299 Msa1068080:CDS 25.0%
AAATGGAAAAAGGATGAGAA+AGG + chr7_2:63066945-63066964 None:intergenic 30.0%
!! TGTGAATGTTGTTATTTGTG+TGG + chr7_2:63066978-63066997 None:intergenic 30.0%
! ATTAATTGGTGAAGAGGTAT+TGG + chr7_2:63067025-63067044 None:intergenic 30.0%
!! CTTATCTATTTCTAGCTACA+AGG - chr7_2:63067100-63067119 Msa1068080:CDS 30.0%
AACAACCAAAACCTACTATT+GGG - chr7_2:63067325-63067344 Msa1068080:CDS 30.0%
TCTTTGTCCAAATGTATCAA+TGG + chr7_2:63067836-63067855 None:intergenic 30.0%
!!! TAGGGTTTTGAATTGATTGA+AGG - chr7_2:63068035-63068054 Msa1068080:intron 30.0%
ATGAAGACAATAGAGGAAAA+GGG + chr7_2:63068271-63068290 None:intergenic 30.0%
TACATTGATGAAGACAATAG+AGG + chr7_2:63068278-63068297 None:intergenic 30.0%
ATTGTCTTCATCAATGTACA+TGG - chr7_2:63068280-63068299 Msa1068080:intron 30.0%
! GTTGGTTTATGTACTATTGT+AGG - chr7_2:63068402-63068421 Msa1068080:CDS 30.0%
AGGTTATGACAAAGAAGAAA+AGG - chr7_2:63068425-63068444 Msa1068080:CDS 30.0%
ATTTGGCAGCACTAAAATAT+TGG - chr7_2:63068463-63068482 Msa1068080:intron 30.0%
TTTGGCAGCACTAAAATATT+GGG - chr7_2:63068464-63068483 Msa1068080:intron 30.0%
CAATGAATTAAGGAACATGT+TGG - chr7_2:63068562-63068581 Msa1068080:intron 30.0%
TAGCCATTATGAAAAAGAAG+TGG - chr7_2:63068820-63068839 Msa1068080:CDS 30.0%
!! CTTCCACTTCTTTTTCATAA+TGG + chr7_2:63068826-63068845 None:intergenic 30.0%
ACACACACAAACTTTACTAT+TGG + chr7_2:63069082-63069101 None:intergenic 30.0%
GTGGACATTTATGATTTCAT+GGG + chr7_2:63069136-63069155 None:intergenic 30.0%
AGTGGACATTTATGATTTCA+TGG + chr7_2:63069137-63069156 None:intergenic 30.0%
TCTATGTTAAAATGTGAGGT+AGG + chr7_2:63069477-63069496 None:intergenic 30.0%
!! AATGGCTTGTTCTGTTAAAT+GGG + chr7_2:63069873-63069892 None:intergenic 30.0%
!! AAATGGCTTGTTCTGTTAAA+TGG + chr7_2:63069874-63069893 None:intergenic 30.0%
CAACTACAGAATTATCCTTA+TGG - chr7_2:63069977-63069996 Msa1068080:intron 30.0%
!!! TTTTGAGTTTGAGTACCATA+AGG + chr7_2:63069995-63070014 None:intergenic 30.0%
GATATTCATCAACTACAGTT+AGG - chr7_2:63070073-63070092 Msa1068080:intron 30.0%
! GGATCTAATTCTGTTGTTTA+TGG - chr7_2:63070178-63070197 Msa1068080:intron 30.0%
! TCTAATTCTGTTGTTTATGG+TGG - chr7_2:63070181-63070200 Msa1068080:intron 30.0%
TGATCAACAGATAATTGTTG+TGG + chr7_2:63070400-63070419 None:intergenic 30.0%
CAACAATTATCTGTTGATCA+AGG - chr7_2:63070400-63070419 Msa1068080:CDS 30.0%
TGTTGATCAAGGATCAAATT+GGG - chr7_2:63070411-63070430 Msa1068080:CDS 30.0%
TATTCATGCAACAAAGTGAA+AGG + chr7_2:63070493-63070512 None:intergenic 30.0%
GAAACCTAACAAGTTCATAG+AGG + chr7_2:63066770-63066789 None:intergenic 35.0%
TCCATCAACTCAAGATCAAA+CGG - chr7_2:63066813-63066832 Msa1068080:CDS 35.0%
TTCAACCCTAATGAAATCTC+AGG - chr7_2:63066853-63066872 Msa1068080:CDS 35.0%
CAGAACCTGAGATTTCATTA+GGG + chr7_2:63066861-63066880 None:intergenic 35.0%
TCAGAACCTGAGATTTCATT+AGG + chr7_2:63066862-63066881 None:intergenic 35.0%
TGTGTGGAAAGCTTCATAAA+TGG + chr7_2:63066962-63066981 None:intergenic 35.0%
GAAAGAAATGAAACCTTGAG+TGG + chr7_2:63067001-63067020 None:intergenic 35.0%
GAGGAAATTAATTGGTGAAG+AGG + chr7_2:63067031-63067050 None:intergenic 35.0%
! TTCTCATAAAGTGCTAACCA+AGG + chr7_2:63067131-63067150 None:intergenic 35.0%
CAACAACCAAAACCTACTAT+TGG - chr7_2:63067324-63067343 Msa1068080:CDS 35.0%
! ATGTTCCCAATAGTAGGTTT+TGG + chr7_2:63067333-63067352 None:intergenic 35.0%
TTTACCGACCATCATGAATA+CGG - chr7_2:63067430-63067449 Msa1068080:CDS 35.0%
!!! TTGTTGTTGTTGTTTTCTGG+TGG + chr7_2:63067610-63067629 None:intergenic 35.0%
ATCACATTTGCATTGAGAAG+AGG + chr7_2:63067709-63067728 None:intergenic 35.0%
! GAATTGATTGAAGGCATAGA+TGG - chr7_2:63068044-63068063 Msa1068080:intron 35.0%
AAGATATGAAGCTCACCTTT+GGG - chr7_2:63068072-63068091 Msa1068080:intron 35.0%
TTCTACAACTATTGTCCCAA+AGG + chr7_2:63068090-63068109 None:intergenic 35.0%
GACAATAGTTGTAGAAGAGA+GGG - chr7_2:63068094-63068113 Msa1068080:intron 35.0%
ACAATAGTTGTAGAAGAGAG+GGG - chr7_2:63068095-63068114 Msa1068080:intron 35.0%
GATGAAGACAATAGAGGAAA+AGG + chr7_2:63068272-63068291 None:intergenic 35.0%
!! ACATGGTTTTGCAGTTTACT+TGG - chr7_2:63068297-63068316 Msa1068080:intron 35.0%
!! CATGGTTTTGCAGTTTACTT+GGG - chr7_2:63068298-63068317 Msa1068080:intron 35.0%
GGTTTATGTACTATTGTAGG+AGG - chr7_2:63068405-63068424 Msa1068080:CDS 35.0%
! TTTTAGTGCTGCCAAATCAT+AGG + chr7_2:63068460-63068479 None:intergenic 35.0%
TTGGCAGCACTAAAATATTG+GGG - chr7_2:63068465-63068484 Msa1068080:intron 35.0%
GTGCAAATTAAAAGAGTGAG+TGG + chr7_2:63068528-63068547 None:intergenic 35.0%
!!! TAAGGAACATGTTGGTCTTT+TGG - chr7_2:63068570-63068589 Msa1068080:intron 35.0%
!! CACTGTTGCTTGGTTATTTT+TGG + chr7_2:63068621-63068640 None:intergenic 35.0%
CAAAAATAACCAAGCAACAG+TGG - chr7_2:63068619-63068638 Msa1068080:intron 35.0%
! AGTGGTGGTGATTCATATAT+TGG - chr7_2:63068637-63068656 Msa1068080:intron 35.0%
AAGAAATGAAGCACATGACA+AGG - chr7_2:63068843-63068862 Msa1068080:intron 35.0%
TATTGACACAGGAAAAGTAG+TGG - chr7_2:63068996-63069015 Msa1068080:intron 35.0%
! AAAAGTAGTGGTTTTTCACG+TGG - chr7_2:63069008-63069027 Msa1068080:intron 35.0%
AAATGTACCTTGTTACTCCT+CGG + chr7_2:63069046-63069065 None:intergenic 35.0%
! CTATTGACTGAGTTCTTAAG+TGG + chr7_2:63069155-63069174 None:intergenic 35.0%
TTAGCTTACTGAAAGTTCCT+AGG + chr7_2:63069412-63069431 None:intergenic 35.0%
!! TATTTTAGGCACTCAAGAAG+AGG - chr7_2:63069622-63069641 Msa1068080:CDS 35.0%
! TGCAAAGCGTTTAAAAGACA+TGG - chr7_2:63069769-63069788 Msa1068080:CDS 35.0%
!! AAGTGTTGTTGATGATGCTA+TGG + chr7_2:63069850-63069869 None:intergenic 35.0%
! TGCATTTGTTGCTGCATAAA+TGG + chr7_2:63069891-63069910 None:intergenic 35.0%
CAGCAACAAATGCATCTAAT+TGG - chr7_2:63069897-63069916 Msa1068080:CDS 35.0%
! TTGGCATTGTAATGATGATG+TGG + chr7_2:63069950-63069969 None:intergenic 35.0%
ATTCTGTAGTTGCATGTTGT+TGG + chr7_2:63069969-63069988 None:intergenic 35.0%
GTACTCAAACTCAAAAGCTT+TGG - chr7_2:63069999-63070018 Msa1068080:intron 35.0%
AGATCCAGAACTATTATCCA+TGG + chr7_2:63070164-63070183 None:intergenic 35.0%
! AATTCTGTTGTTTATGGTGG+TGG - chr7_2:63070184-63070203 Msa1068080:intron 35.0%
! TGGTGGATATATGATTCCAA+TGG - chr7_2:63070231-63070250 Msa1068080:intron 35.0%
! TTTTGGTGAGAGTGAGATTA+AGG - chr7_2:63070297-63070316 Msa1068080:CDS 35.0%
TTTGGTGAGAGTGAGATTAA+GGG - chr7_2:63070298-63070317 Msa1068080:CDS 35.0%
CTGTTGATCAAGGATCAAAT+TGG - chr7_2:63070410-63070429 Msa1068080:CDS 35.0%
! ATGGCCTCTATGAACTTGTT+AGG - chr7_2:63066763-63066782 Msa1068080:CDS 40.0%
! GTTGATGGATGTTGTTCTTG+TGG + chr7_2:63066802-63066821 None:intergenic 40.0%
!! ACCGTTTGATCTTGAGTTGA+TGG + chr7_2:63066817-63066836 None:intergenic 40.0%
ATCAACTCAAGATCAAACGG+TGG - chr7_2:63066816-63066835 Msa1068080:CDS 40.0%
! ATCTCAGGTTCTGATGTTCA+AGG - chr7_2:63066868-63066887 Msa1068080:CDS 40.0%
GAAAGGTTGAGTGAATGATG+AGG + chr7_2:63066928-63066947 None:intergenic 40.0%
AACAACATTCACACCACTCA+AGG - chr7_2:63066985-63067004 Msa1068080:CDS 40.0%
TGCATGATGTTCCCAATAGT+AGG + chr7_2:63067339-63067358 None:intergenic 40.0%
!!! TTGTTGTTGTTTTCTGGTGG+TGG + chr7_2:63067607-63067626 None:intergenic 40.0%
CTATCACTTTCCATGAGTAC+TGG - chr7_2:63067661-63067680 Msa1068080:intron 40.0%
CTCAATGCAAATGTGATGAG+TGG - chr7_2:63067712-63067731 Msa1068080:intron 40.0%
GAGTGGTGAGATTTCATCAT+CGG - chr7_2:63067729-63067748 Msa1068080:intron 40.0%
TCTAGTACAACTGCAGTTGT+GGG + chr7_2:63067769-63067788 None:intergenic 40.0%
ATCTAGTACAACTGCAGTTG+TGG + chr7_2:63067770-63067789 None:intergenic 40.0%
! CACTTTCAACTACACTGGTT+TGG + chr7_2:63067798-63067817 None:intergenic 40.0%
CAAAGAACTTCCATTTACCG+TGG - chr7_2:63067850-63067869 Msa1068080:intron 40.0%
TAGAGAACCTTGTTACACCA+CGG + chr7_2:63067870-63067889 None:intergenic 40.0%
! AGATGCATGATGGTGAGTTT+AGG - chr7_2:63068016-63068035 Msa1068080:intron 40.0%
! GATGCATGATGGTGAGTTTA+GGG - chr7_2:63068017-63068036 Msa1068080:intron 40.0%
GAAGATATGAAGCTCACCTT+TGG - chr7_2:63068071-63068090 Msa1068080:intron 40.0%
GGACAATAGTTGTAGAAGAG+AGG - chr7_2:63068093-63068112 Msa1068080:intron 40.0%
GTGAGTGGAAATTAACTCAC+TGG + chr7_2:63068513-63068532 None:intergenic 40.0%
! TTGGTAACATCACTGTTGCT+TGG + chr7_2:63068602-63068621 None:intergenic 40.0%
AAATAACCAAGCAACAGTGG+TGG - chr7_2:63068622-63068641 Msa1068080:intron 40.0%
CAGACACATTCCATCAAATG+AGG + chr7_2:63068694-63068713 None:intergenic 40.0%
AGTATGTTGCGTCATTGAGA+AGG - chr7_2:63068870-63068889 Msa1068080:intron 40.0%
GATTGCAGACATCATCAACA+TGG - chr7_2:63069338-63069357 Msa1068080:intron 40.0%
GACATCATCAACATGGTAGA+TGG - chr7_2:63069345-63069364 Msa1068080:intron 40.0%
GTGGCAGCTATAAAATTCAG+AGG - chr7_2:63069662-63069681 Msa1068080:CDS 40.0%
! TAATGTGCTGCTCTCAAGTA+TGG + chr7_2:63069735-63069754 None:intergenic 40.0%
! TATGGTCTTGCTCAGTTCTA+TGG + chr7_2:63069832-63069851 None:intergenic 40.0%
GCTTCCATGGATAATAGTTC+TGG - chr7_2:63070157-63070176 Msa1068080:intron 40.0%
CCATCATTTGCAATAGCCAT+TGG + chr7_2:63070250-63070269 None:intergenic 40.0%
CCAATGGCTATTGCAAATGA+TGG - chr7_2:63070247-63070266 Msa1068080:intron 40.0%
GAGAGTGAGATTAAGGGATT+TGG - chr7_2:63070304-63070323 Msa1068080:CDS 40.0%
TCATGCAACAAAGTGAAAGG+AGG + chr7_2:63070490-63070509 None:intergenic 40.0%
! AAACGGTGGCTTCTCGTTTT+GGG - chr7_2:63066830-63066849 Msa1068080:CDS 45.0%
!! GTTTTGGTGCAGTGAGATTC+TGG + chr7_2:63067239-63067258 None:intergenic 45.0%
CCAAAGCTCGAAAACTTCCT+CGG - chr7_2:63067397-63067416 Msa1068080:CDS 45.0%
ACCACCGTATTCATGATGGT+CGG + chr7_2:63067437-63067456 None:intergenic 45.0%
TGCTACCACCGTATTCATGA+TGG + chr7_2:63067441-63067460 None:intergenic 45.0%
!!! TGTTGTTTTCTGGTGGTGGT+TGG + chr7_2:63067603-63067622 None:intergenic 45.0%
CACAGCACTTTCAACTACAC+TGG + chr7_2:63067803-63067822 None:intergenic 45.0%
CCTTGTTACACCACGGTAAA+TGG + chr7_2:63067863-63067882 None:intergenic 45.0%
CCATTTACCGTGGTGTAACA+AGG - chr7_2:63067860-63067879 Msa1068080:CDS 45.0%
! GATTGAAGGCATAGATGGAC+AGG - chr7_2:63068049-63068068 Msa1068080:intron 45.0%
TTGCAGTTTACTTGGGTGAG+TGG - chr7_2:63068305-63068324 Msa1068080:intron 45.0%
TGCAGTTTACTTGGGTGAGT+GGG - chr7_2:63068306-63068325 Msa1068080:intron 45.0%
CCTTGTTACTCCTCGGTAAA+TGG + chr7_2:63069039-63069058 None:intergenic 45.0%
CCATTTACCGAGGAGTAACA+AGG - chr7_2:63069036-63069055 Msa1068080:intron 45.0%
AACATGGTAGATGGCAAGCT+AGG - chr7_2:63069354-63069373 Msa1068080:intron 45.0%
GGCAACAAAGATCTCTACCT+AGG - chr7_2:63069392-63069411 Msa1068080:intron 45.0%
GAGAGCAGCACATTACCAAT+TGG - chr7_2:63069740-63069759 Msa1068080:CDS 45.0%
AGCAGCACATTACCAATTGG+TGG - chr7_2:63069743-63069762 Msa1068080:CDS 45.0%
GATGATGTGGTTGTTGCTGT+TGG + chr7_2:63069937-63069956 None:intergenic 45.0%
!! GTTTATGGTGGTGGAGATCA+TGG - chr7_2:63070193-63070212 Msa1068080:intron 45.0%
CATGGTGGTTATGGAGGAAA+TGG - chr7_2:63070211-63070230 Msa1068080:intron 45.0%
! CTTGCTGCTTGTGCATGATA+AGG + chr7_2:63070361-63070380 None:intergenic 45.0%
CTTATCATGCACAAGCAGCA+AGG - chr7_2:63070359-63070378 Msa1068080:CDS 45.0%
!! GCAAGTGTTGGAATAGCAGT+TGG + chr7_2:63070439-63070458 None:intergenic 45.0%
CTATTCCAACACTTGCTCCA+AGG - chr7_2:63070443-63070462 Msa1068080:CDS 45.0%
! AGAGAGACATTGGTAGTCCT+TGG + chr7_2:63070463-63070482 None:intergenic 45.0%
AGGAGGACAAAGAGAGACAT+TGG + chr7_2:63070473-63070492 None:intergenic 45.0%
!! AAAATATAATAAAAATAGAA+AGG + chr7_2:63067992-63068011 None:intergenic 5.0%
!!! ATTTTAAATATATATACTAT+TGG + chr7_2:63069548-63069567 None:intergenic 5.0%
! CAAACGGTGGCTTCTCGTTT+TGG - chr7_2:63066829-63066848 Msa1068080:CDS 50.0%
CTAGCTACAAGGCTTCACCT+TGG - chr7_2:63067111-63067130 Msa1068080:CDS 50.0%
TGGTGCAGTGAGATTCTGGT+CGG + chr7_2:63067235-63067254 None:intergenic 50.0%
! CGAGCTTTGGTTGTGCTTGT+TGG + chr7_2:63067387-63067406 None:intergenic 50.0%
!! CCGAGGAAGTTTTCGAGCTT+TGG + chr7_2:63067400-63067419 None:intergenic 50.0%
AAGCTCGAAAACTTCCTCGG+TGG - chr7_2:63067400-63067419 Msa1068080:CDS 50.0%
ACCGACCATCATGAATACGG+TGG - chr7_2:63067433-63067452 Msa1068080:CDS 50.0%
! CTGATGAGGTGGAAGGTGTA+AGG + chr7_2:63067476-63067495 None:intergenic 50.0%
TGACTGTGAGCCAGTACTCA+TGG + chr7_2:63067674-63067693 None:intergenic 50.0%
AGTACAACTGCAGTTGTGGG+TGG + chr7_2:63067766-63067785 None:intergenic 50.0%
GGCAGCTAGAGCCTATGATT+TGG - chr7_2:63068446-63068465 Msa1068080:intron 50.0%
GAATCACCACCACTGTTGCT+TGG + chr7_2:63068631-63068650 None:intergenic 50.0%
GGTAGATGGCAAGCTAGGAT+TGG - chr7_2:63069359-63069378 Msa1068080:intron 50.0%
GCTAGGATTGGAAGAGTTGC+AGG - chr7_2:63069371-63069390 Msa1068080:intron 50.0%
GAGCATGGATTCTGCTTCCA+TGG - chr7_2:63070144-63070163 Msa1068080:intron 50.0%
!! TATGGTGGTGGAGATCATGG+TGG - chr7_2:63070196-63070215 Msa1068080:intron 50.0%
GGTGGAGATCATGGTGGTTA+TGG - chr7_2:63070202-63070221 Msa1068080:intron 50.0%
GGAGATCATGGTGGTTATGG+AGG - chr7_2:63070205-63070224 Msa1068080:intron 50.0%
GGTGGTTATGGAGGAAATGG+TGG - chr7_2:63070214-63070233 Msa1068080:intron 50.0%
GTAGTCCTTGGAGCAAGTGT+TGG + chr7_2:63070451-63070470 None:intergenic 50.0%
!! CGGTAAAAGAGTGTCCACCG+AGG + chr7_2:63067417-63067436 None:intergenic 55.0%
ACACCTTCCACCTCATCAGC+CGG - chr7_2:63067477-63067496 Msa1068080:CDS 55.0%
CAGACTCGCAAAGGAAGGCA+AGG - chr7_2:63068118-63068137 Msa1068080:intron 55.0%
CGTGGTGCATCCATTTACCG+AGG - chr7_2:63069026-63069045 Msa1068080:intron 55.0%
CACTCAAGAAGAGGCAGCAG+AGG - chr7_2:63069631-63069650 Msa1068080:CDS 55.0%
! GGCAGCAGAGGCATATGATG+TGG - chr7_2:63069643-63069662 Msa1068080:CDS 55.0%
CGCTTTGCAGCACCACCAAT+TGG + chr7_2:63069758-63069777 None:intergenic 55.0%
CTTCCGGCTGATGAGGTGGA+AGG + chr7_2:63067483-63067502 None:intergenic 60.0%
GATGCTTCCGGCTGATGAGG+TGG + chr7_2:63067487-63067506 None:intergenic 60.0%
CAGGATGCTTCCGGCTGATG+AGG + chr7_2:63067490-63067509 None:intergenic 60.0%
!! CATCAGCCGGAAGCATCCTG+TGG - chr7_2:63067490-63067509 Msa1068080:CDS 60.0%
AGAGAGGGGCAGACTCGCAA+AGG - chr7_2:63068109-63068128 Msa1068080:intron 60.0%
AGGGGCAGACTCGCAAAGGA+AGG - chr7_2:63068113-63068132 Msa1068080:intron 60.0%
CCAGCGCCACAGGATGCTTC+CGG + chr7_2:63067499-63067518 None:intergenic 65.0%
! GAAGCATCCTGTGGCGCTGG+TGG - chr7_2:63067499-63067518 Msa1068080:CDS 65.0%
!! TCCTGTGGCGCTGGTGGTGA+CGG - chr7_2:63067505-63067524 Msa1068080:CDS 65.0%
!! GGTGACGGTGGTGGTGGTGA+TGG - chr7_2:63067520-63067539 Msa1068080:CDS 65.0%
!! CCGGAAGCATCCTGTGGCGC+TGG - chr7_2:63067496-63067515 Msa1068080:CDS 70.0%
ACCGTCACCACCAGCGCCAC+AGG + chr7_2:63067509-63067528 None:intergenic 70.0%
!! TGTGGCGCTGGTGGTGACGG+TGG - chr7_2:63067508-63067527 Msa1068080:CDS 70.0%
!! GCTGGTGGTGACGGTGGTGG+TGG - chr7_2:63067514-63067533 Msa1068080:CDS 70.0%
!! GGCGCTGGTGGTGACGGTGG+TGG - chr7_2:63067511-63067530 Msa1068080:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 63066763 63070513 63066763 ID=Msa1068080;Name=Msa1068080
chr7_2 mRNA 63066763 63070513 63066763 ID=Msa1068080-mRNA-1;Parent=Msa1068080;Name=Msa1068080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|8|0|691
chr7_2 exon 63070270 63070513 63070270 ID=Msa1068080-mRNA-1:exon:12914;Parent=Msa1068080-mRNA-1
chr7_2 exon 63069395 63069968 63069395 ID=Msa1068080-mRNA-1:exon:12913;Parent=Msa1068080-mRNA-1
chr7_2 exon 63069137 63069219 63069137 ID=Msa1068080-mRNA-1:exon:12912;Parent=Msa1068080-mRNA-1
chr7_2 exon 63068764 63068852 63068764 ID=Msa1068080-mRNA-1:exon:12911;Parent=Msa1068080-mRNA-1
chr7_2 exon 63068385 63068458 63068385 ID=Msa1068080-mRNA-1:exon:12910;Parent=Msa1068080-mRNA-1
chr7_2 exon 63068219 63068269 63068219 ID=Msa1068080-mRNA-1:exon:12909;Parent=Msa1068080-mRNA-1
chr7_2 exon 63067854 63067930 63067854 ID=Msa1068080-mRNA-1:exon:12908;Parent=Msa1068080-mRNA-1
chr7_2 exon 63066763 63067646 63066763 ID=Msa1068080-mRNA-1:exon:12907;Parent=Msa1068080-mRNA-1
chr7_2 CDS 63070270 63070513 63070270 ID=Msa1068080-mRNA-1:cds;Parent=Msa1068080-mRNA-1
chr7_2 CDS 63069395 63069968 63069395 ID=Msa1068080-mRNA-1:cds;Parent=Msa1068080-mRNA-1
chr7_2 CDS 63069137 63069219 63069137 ID=Msa1068080-mRNA-1:cds;Parent=Msa1068080-mRNA-1
chr7_2 CDS 63068764 63068852 63068764 ID=Msa1068080-mRNA-1:cds;Parent=Msa1068080-mRNA-1
chr7_2 CDS 63068385 63068458 63068385 ID=Msa1068080-mRNA-1:cds;Parent=Msa1068080-mRNA-1
chr7_2 CDS 63068219 63068269 63068219 ID=Msa1068080-mRNA-1:cds;Parent=Msa1068080-mRNA-1
chr7_2 CDS 63067854 63067930 63067854 ID=Msa1068080-mRNA-1:cds;Parent=Msa1068080-mRNA-1
chr7_2 CDS 63066763 63067646 63066763 ID=Msa1068080-mRNA-1:cds;Parent=Msa1068080-mRNA-1
Gene Sequence

>Msa1068080

ATGGCCTCTATGAACTTGTTAGGTTTCTCTCTATCTCCACAAGAACAACATCCATCAACTCAAGATCAAACGGTGGCTTCTCGTTTTGGGTTCAACCCTAATGAAATCTCAGGTTCTGATGTTCAAGGAGATCACTGCTATGATCTCTCTTCTCACACAACTCCTCATCATTCACTCAACCTTTCTCATCCTTTTTCCATTTATGAAGCTTTCCACACAAATAACAACATTCACACCACTCAAGATTGGAAGGAGAACTACAACAACCAAAACCTACTATTGGGAACATCATGCATGAACCAAAATATGAACAACAATAACCAACAAGCACAACCAAAGCTCGAAAACTTCCTCGGTGGACACTCTTTTACCGACCATCATGAATACGGTGGTAGCAACTCATACTCTTCCTTACACCTTCCACCTCATCAGCCGGAAGCATCCTGTGGCGCTGGTGGTGACGGTGGTGGTGGTGATGGTAGCACAAGTAACAATAACTCAATAGGTTTATCTATGATAAAAACATGGCTCAGAAACCAACCACCACCAGAAAACAACAACAACAATAACAATGAAAGTGGTGCACGTGTGCAGACACTATCACTTTCCATGAGTACTGGCTCACAGTCAAGTTCATCTGTGCCTCTTCTCAATGCAAATGTGATGAGTGGTGAGATTTCATCATCGGAAAACAAACAACCACCCACAACTGCAGTTGTACTAGATAGCAACCAAACCAGTGTAGTTGAAAGTGCTGTGCCTAGAAAATCCATTGATACATTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCACCTTTGGGACAATAGTTGTAGAAGAGAGGGGCAGACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATATTGGGGAACAACTACTACAACAAATTTTCCAATTAGCCATTATGAAAAAGAAGTGGAAGAAATGAAGCACATGACAAGGCAAGAGTATGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCACGTGGTGCATCCATTTACCGAGGAGTAACAAGACATCATCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAGGCATATGATGTGGCAGCTATAAAATTCAGAGGACTGAGTGCAGTTACAAACTTTGACATGAGCAGATATGATGTCAAAACCATACTTGAGAGCAGCACATTACCAATTGGTGGTGCTGCAAAGCGTTTAAAAGACATGGAGCAAGTTGAATTGAATCATGTGAATGTTGATATTGGCCATAGAACTGAGCAAGACCATAGCATCATCAACAACACTTCCCATTTAACAGAACAAGCCATTTATGCAGCAACAAATGCATCTAATTGGCATGCACTTTCATTCCAACAGCAACAACCACATCATCATTACAATGCCAACAACATGCAACTACAGAATTATCCTTATGGTACTCAAACTCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGATCATAGTACTTATACTACTGCTACTGATATTCATCAACTACAGTTAGGGAATAATAGTAACAATACTCACAATTTCTTTGGTTTACAAAATATCATGAGCATGGATTCTGCTTCCATGGATAATAGTTCTGGATCTAATTCTGTTGTTTATGGTGGTGGAGATCATGGTGGTTATGGAGGAAATGGTGGATATATGATTCCAATGGCTATTGCAAATGATGGTAACCAAAATCAAAGAAGCAACAATAATTTTGGTGAGAGTGAGATTAAGGGATTTGGTTATGAAAATGTTTTTGGGACTAGCAATGATCCTTATCATGCACAAGCAGCAAGGAACTTGTATTATCAGCCACAACAATTATCTGTTGATCAAGGATCAAATTGGGTTCCAACTGCTATTCCAACACTTGCTCCAAGGACTACCAATGTCTCTCTTTGTCCTCCTTTCACTTTGTTGCATGAATAG
Protein sequence

>Msa1068080

MASMNLLGFSLSPQEQHPSTQDQTVASRFGFNPNEISGSDVQGDHCYDLSSHTTPHHSLNLSHPFSIYEAFHTNNNIHTTQDWKENYNNQNLLLGTSCMNQNMNNNNQQAQPKLENFLGGHSFTDHHEYGGSNSYSSLHLPPHQPEASCGAGGDGGGGDGSTSNNNSIGLSMIKTWLRNQPPPENNNNNNNESGARVQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILESSTLPIGGAAKRLKDMEQVELNHVNVDIGHRTEQDHSIINNTSHLTEQAIYAATNASNWHALSFQQQQPHHHYNANNMQLQNYPYGTQTQKLWCKQEQDSDDHSTYTTATDIHQLQLGNNSNNTHNFFGLQNIMSMDSASMDNSSGSNSVVYGGGDHGGYGGNGGYMIPMAIANDGNQNQRSNNNFGESEIKGFGYENVFGTSNDPYHAQAARNLYYQPQQLSVDQGSNWVPTAIPTLAPRTTNVSLCPPFTLLHE*