Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0793570 | sp|B2TPM3|SURE_CLOBB | 37.269 | 271 | 127 | 10 | 9 | 276 | 3 | 233 | 1.20e-39 | 142 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0793570 | A0A2K3MS27 | 84.314 | 306 | 47 | 1 | 1 | 306 | 1 | 305 | 0.0 | 513 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000610 | Msa0793570 | -0.800233 | 1.586584e-48 | -8.615850e-47 |
Msa0004940 | Msa0793570 | 0.804397 | 2.203439e-49 | -8.615850e-47 |
Msa0010150 | Msa0793570 | 0.821900 | 3.157832e-53 | -8.615850e-47 |
Msa0046680 | Msa0793570 | 0.808186 | 3.505321e-50 | -8.615850e-47 |
Msa0048380 | Msa0793570 | 0.809373 | 1.954105e-50 | -8.615850e-47 |
Msa0059880 | Msa0793570 | 0.807076 | 6.030925e-50 | -8.615850e-47 |
Msa0064990 | Msa0793570 | 0.810716 | 1.003713e-50 | -8.615850e-47 |
Msa0081700 | Msa0793570 | -0.804050 | 2.601274e-49 | -8.615850e-47 |
Msa0604280 | Msa0793570 | 0.800144 | 1.653835e-48 | -8.615850e-47 |
Msa0609460 | Msa0793570 | 0.816843 | 4.487175e-52 | -8.615850e-47 |
Msa0628200 | Msa0793570 | 0.813721 | 2.218029e-51 | -8.615850e-47 |
Msa0629030 | Msa0793570 | 0.808773 | 2.627264e-50 | -8.615850e-47 |
Msa0631700 | Msa0793570 | 0.806478 | 8.069208e-50 | -8.615850e-47 |
Msa0634290 | Msa0793570 | 0.804999 | 1.649323e-49 | -8.615850e-47 |
Msa0641700 | Msa0793570 | 0.811126 | 8.183781e-51 | -8.615850e-47 |
Msa0650100 | Msa0793570 | 0.803744 | 3.012069e-49 | -8.615850e-47 |
Msa0651820 | Msa0793570 | 0.826353 | 2.842387e-54 | -8.615850e-47 |
Msa0657340 | Msa0793570 | 0.809484 | 1.849746e-50 | -8.615850e-47 |
Msa0666580 | Msa0793570 | 0.813046 | 3.121279e-51 | -8.615850e-47 |
Msa0668220 | Msa0793570 | 0.817667 | 2.928114e-52 | -8.615850e-47 |
Msa0672090 | Msa0793570 | 0.826032 | 3.387993e-54 | -8.615850e-47 |
Msa0680460 | Msa0793570 | 0.816666 | 4.917532e-52 | -8.615850e-47 |
Msa0685080 | Msa0793570 | 0.801995 | 6.920618e-49 | -8.615850e-47 |
Msa0701430 | Msa0793570 | 0.802356 | 5.833423e-49 | -8.615850e-47 |
Msa0716620 | Msa0793570 | 0.813966 | 1.958456e-51 | -8.615850e-47 |
Msa0721260 | Msa0793570 | 0.821260 | 4.438980e-53 | -8.615850e-47 |
Msa0728210 | Msa0793570 | 0.801897 | 7.250467e-49 | -8.615850e-47 |
Msa0728520 | Msa0793570 | 0.811625 | 6.375234e-51 | -8.615850e-47 |
Msa0744550 | Msa0793570 | 0.817932 | 2.551427e-52 | -8.615850e-47 |
Msa0744560 | Msa0793570 | 0.820868 | 5.463074e-53 | -8.615850e-47 |
Msa0753410 | Msa0793570 | 0.825445 | 4.668987e-54 | -8.615850e-47 |
Msa0772350 | Msa0793570 | 0.801803 | 7.579736e-49 | -8.615850e-47 |
Msa0776540 | Msa0793570 | 0.811662 | 6.259337e-51 | -8.615850e-47 |
Msa0793570 | Msa0795320 | 0.810220 | 1.284347e-50 | -8.615850e-47 |
Msa0793570 | Msa0795330 | 0.820459 | 6.783617e-53 | -8.615850e-47 |
Msa0793570 | Msa0798840 | 0.813556 | 2.410572e-51 | -8.615850e-47 |
Msa0793570 | Msa0814160 | 0.802035 | 6.791878e-49 | -8.615850e-47 |
Msa0793570 | Msa0826360 | 0.840133 | 1.044452e-57 | -8.615850e-47 |
Msa0793570 | Msa0826370 | 0.831217 | 1.891336e-55 | -8.615850e-47 |
Msa0793570 | Msa0829990 | 0.816460 | 5.467197e-52 | -8.615850e-47 |
Msa0793570 | Msa0833230 | 0.803489 | 3.402661e-49 | -8.615850e-47 |
Msa0793570 | Msa0837550 | 0.821898 | 3.161228e-53 | -8.615850e-47 |
Msa0793570 | Msa0855260 | 0.819516 | 1.114624e-52 | -8.615850e-47 |
Msa0793570 | Msa0865810 | 0.823380 | 1.428990e-53 | -8.615850e-47 |
Msa0793570 | Msa0865820 | 0.803415 | 3.525273e-49 | -8.615850e-47 |
Msa0793570 | Msa0865830 | 0.831353 | 1.751512e-55 | -8.615850e-47 |
Msa0793570 | Msa0880750 | 0.800224 | 1.593541e-48 | -8.615850e-47 |
Msa0793570 | Msa0896920 | 0.821706 | 3.500168e-53 | -8.615850e-47 |
Msa0793570 | Msa0911490 | -0.802596 | 5.205391e-49 | -8.615850e-47 |
Msa0793570 | Msa0932910 | 0.806009 | 1.012677e-49 | -8.615850e-47 |
Msa0793570 | Msa0932930 | 0.820602 | 6.290122e-53 | -8.615850e-47 |
Msa0793570 | Msa0970790 | 0.831437 | 1.670319e-55 | -8.615850e-47 |
Msa0793570 | Msa0996980 | 0.801820 | 7.518884e-49 | -8.615850e-47 |
Msa0793570 | Msa1006170 | 0.803189 | 3.925697e-49 | -8.615850e-47 |
Msa0793570 | Msa1023430 | 0.813272 | 2.783255e-51 | -8.615850e-47 |
Msa0793570 | Msa1035050 | 0.805674 | 1.191243e-49 | -8.615850e-47 |
Msa0793570 | Msa1037360 | 0.844018 | 9.803418e-59 | -8.615850e-47 |
Msa0793570 | Msa1041250 | 0.804682 | 1.921110e-49 | -8.615850e-47 |
Msa0793570 | Msa1048350 | 0.812677 | 3.759743e-51 | -8.615850e-47 |
Msa0793570 | Msa1049810 | 0.803935 | 2.749433e-49 | -8.615850e-47 |
Msa0793570 | Msa1061840 | 0.803983 | 2.686466e-49 | -8.615850e-47 |
Msa0793570 | Msa1064940 | 0.824426 | 8.124557e-54 | -8.615850e-47 |
Msa0793570 | Msa1071230 | 0.844328 | 8.090759e-59 | -8.615850e-47 |
Msa0793570 | Msa1075090 | 0.800067 | 1.714851e-48 | -8.615850e-47 |
Msa0793570 | Msa1082080 | 0.810414 | 1.166404e-50 | -8.615850e-47 |
Msa0793570 | Msa1084340 | -0.804382 | 2.218479e-49 | -8.615850e-47 |
Msa0793570 | Msa1087380 | 0.803568 | 3.276648e-49 | -8.615850e-47 |
Msa0793570 | Msa1107220 | 0.806641 | 7.451893e-50 | -8.615850e-47 |
Msa0793570 | Msa1107510 | 0.810938 | 8.986835e-51 | -8.615850e-47 |
Msa0793570 | Msa1110900 | 0.821609 | 3.686162e-53 | -8.615850e-47 |
Msa0793570 | Msa1123000 | 0.832205 | 1.079311e-55 | -8.615850e-47 |
Msa0793570 | Msa1136630 | 0.803118 | 4.061244e-49 | -8.615850e-47 |
Msa0793570 | Msa1138110 | 0.810873 | 9.284681e-51 | -8.615850e-47 |
Msa0793570 | Msa1143250 | 0.816578 | 5.144214e-52 | -8.615850e-47 |
Msa0793570 | Msa1151070 | 0.802962 | 4.373272e-49 | -8.615850e-47 |
Msa0793570 | Msa1157200 | 0.809720 | 1.645495e-50 | -8.615850e-47 |
Msa0793570 | Msa1162430 | 0.804050 | 2.601742e-49 | -8.615850e-47 |
Msa0793570 | Msa1164230 | 0.832885 | 7.322117e-56 | -8.615850e-47 |
Msa0793570 | Msa1202110 | 0.827614 | 1.419798e-54 | -8.615850e-47 |
Msa0793570 | Msa1206330 | 0.811537 | 6.663504e-51 | -8.615850e-47 |
Msa0793570 | Msa1206380 | 0.805026 | 1.628234e-49 | -8.615850e-47 |
Msa0793570 | Msa1208910 | 0.822526 | 2.259438e-53 | -8.615850e-47 |
Msa0793570 | Msa1218520 | 0.800462 | 1.424896e-48 | -8.615850e-47 |
Msa0793570 | Msa1226210 | 0.802645 | 5.085045e-49 | -8.615850e-47 |
Msa0793570 | Msa1239190 | 0.804041 | 2.613401e-49 | -8.615850e-47 |
Msa0793570 | Msa1254870 | 0.826326 | 2.884974e-54 | -8.615850e-47 |
Msa0793570 | Msa1269200 | 0.812120 | 4.975217e-51 | -8.615850e-47 |
Msa0793570 | Msa1328430 | 0.825782 | 3.885877e-54 | -8.615850e-47 |
Msa0793570 | Msa1340440 | 0.800231 | 1.587720e-48 | -8.615850e-47 |
Msa0793570 | Msa1344930 | 0.817985 | 2.482112e-52 | -8.615850e-47 |
Msa0793570 | Msa1353130 | 0.838707 | 2.449981e-57 | -8.615850e-47 |
Msa0793570 | Msa1366480 | 0.804955 | 1.684663e-49 | -8.615850e-47 |
Msa0793570 | Msa1373990 | 0.806924 | 6.495777e-50 | -8.615850e-47 |
Msa0793570 | Msa1375640 | 0.805508 | 1.290817e-49 | -8.615850e-47 |
Msa0793570 | Msa1398110 | 0.825538 | 4.437818e-54 | -8.615850e-47 |
Msa0793570 | Msa1398120 | 0.825189 | 5.369196e-54 | -8.615850e-47 |
Msa0793570 | Msa1419210 | 0.815123 | 1.086189e-51 | -8.615850e-47 |
Msa0793570 | Msa1429190 | 0.801711 | 7.916835e-49 | -8.615850e-47 |
Msa0793570 | Msa1436540 | 0.809957 | 1.463193e-50 | -8.615850e-47 |
Msa0793570 | Msa1445900 | 0.810523 | 1.105221e-50 | -8.615850e-47 |
Msa0793570 | Msa1459920 | 0.829001 | 6.569752e-55 | -8.615850e-47 |
Msa0793570 | Msa1459930 | 0.828970 | 6.685535e-55 | -8.615850e-47 |
Msa0121320 | Msa0793570 | 0.801805 | 7.570368e-49 | -8.615850e-47 |
Msa0123530 | Msa0793570 | 0.800069 | 1.713258e-48 | -8.615850e-47 |
Msa0129290 | Msa0793570 | 0.801927 | 7.145129e-49 | -8.615850e-47 |
Msa0146210 | Msa0793570 | 0.805330 | 1.406538e-49 | -8.615850e-47 |
Msa0150910 | Msa0793570 | 0.815609 | 8.469237e-52 | -8.615850e-47 |
Msa0150920 | Msa0793570 | 0.808925 | 2.437344e-50 | -8.615850e-47 |
Msa0164560 | Msa0793570 | 0.804485 | 2.111532e-49 | -8.615850e-47 |
Msa0183960 | Msa0793570 | -0.814937 | 1.194745e-51 | -8.615850e-47 |
Msa0196280 | Msa0793570 | 0.800718 | 1.263869e-48 | -8.615850e-47 |
Msa0198140 | Msa0793570 | -0.806582 | 7.668678e-50 | -8.615850e-47 |
Msa0198220 | Msa0793570 | -0.806103 | 9.677237e-50 | -8.615850e-47 |
Msa0199860 | Msa0793570 | 0.800555 | 1.364027e-48 | -8.615850e-47 |
Msa0200080 | Msa0793570 | 0.801255 | 9.814141e-49 | -8.615850e-47 |
Msa0200090 | Msa0793570 | 0.830776 | 2.427481e-55 | -8.615850e-47 |
Msa0207970 | Msa0793570 | 0.806675 | 7.329546e-50 | -8.615850e-47 |
Msa0369990 | Msa0793570 | 0.828516 | 8.608951e-55 | -8.615850e-47 |
Msa0405200 | Msa0793570 | 0.806499 | 7.983836e-50 | -8.615850e-47 |
Msa0414480 | Msa0793570 | 0.805479 | 1.308483e-49 | -8.615850e-47 |
Msa0415010 | Msa0793570 | 0.803435 | 3.490860e-49 | -8.615850e-47 |
Msa0417400 | Msa0793570 | 0.813846 | 2.081502e-51 | -8.615850e-47 |
Msa0421080 | Msa0793570 | 0.833276 | 5.853752e-56 | -8.615850e-47 |
Msa0445530 | Msa0793570 | 0.822368 | 2.459163e-53 | -8.615850e-47 |
Msa0464310 | Msa0793570 | 0.818848 | 1.582420e-52 | -8.615850e-47 |
Msa0466850 | Msa0793570 | 0.809199 | 2.129685e-50 | -8.615850e-47 |
Msa0480540 | Msa0793570 | 0.810651 | 1.036745e-50 | -8.615850e-47 |
Msa0480550 | Msa0793570 | 0.813932 | 1.992126e-51 | -8.615850e-47 |
Msa0242720 | Msa0793570 | 0.831158 | 1.955781e-55 | -8.615850e-47 |
Msa0248320 | Msa0793570 | 0.827400 | 1.597373e-54 | -8.615850e-47 |
Msa0258280 | Msa0793570 | -0.802120 | 6.521424e-49 | -8.615850e-47 |
Msa0269710 | Msa0793570 | 0.816440 | 5.523417e-52 | -8.615850e-47 |
Msa0274260 | Msa0793570 | 0.822737 | 2.018140e-53 | -8.615850e-47 |
Msa0275570 | Msa0793570 | 0.819705 | 1.009138e-52 | -8.615850e-47 |
Msa0278340 | Msa0793570 | -0.802702 | 4.949290e-49 | -8.615850e-47 |
Msa0294200 | Msa0793570 | 0.803702 | 3.073362e-49 | -8.615850e-47 |
Msa0303900 | Msa0793570 | 0.841325 | 5.088899e-58 | -8.615850e-47 |
Msa0314620 | Msa0793570 | -0.800086 | 1.699296e-48 | -8.615850e-47 |
Msa0320130 | Msa0793570 | 0.834226 | 3.386913e-56 | -8.615850e-47 |
Msa0320140 | Msa0793570 | 0.825854 | 3.736137e-54 | -8.615850e-47 |
Msa0324810 | Msa0793570 | 0.831137 | 1.979615e-55 | -8.615850e-47 |
Msa0333770 | Msa0793570 | 0.841129 | 5.728049e-58 | -8.615850e-47 |
Msa0489370 | Msa0793570 | 0.810968 | 8.854624e-51 | -8.615850e-47 |
Msa0493710 | Msa0793570 | 0.802836 | 4.644621e-49 | -8.615850e-47 |
Msa0513670 | Msa0793570 | 0.811383 | 7.196049e-51 | -8.615850e-47 |
Msa0518490 | Msa0793570 | 0.800435 | 1.443065e-48 | -8.615850e-47 |
Msa0531050 | Msa0793570 | 0.807697 | 4.454189e-50 | -8.615850e-47 |
Msa0535570 | Msa0793570 | 0.820517 | 6.580235e-53 | -8.615850e-47 |
Msa0545680 | Msa0793570 | 0.801409 | 9.126079e-49 | -8.615850e-47 |
Msa0554660 | Msa0793570 | 0.808122 | 3.617168e-50 | -8.615850e-47 |
Msa0565180 | Msa0793570 | 0.808720 | 2.696734e-50 | -8.615850e-47 |
Msa0588040 | Msa0793570 | 0.809978 | 1.448071e-50 | -8.615850e-47 |
Msa0588730 | Msa0793570 | 0.810934 | 9.002648e-51 | -8.615850e-47 |
Msa0589740 | Msa0793570 | 0.807537 | 4.815311e-50 | -8.615850e-47 |
Msa0594330 | Msa0793570 | 0.805330 | 1.406510e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0793570 | MtrunA17_Chr5g0394431 | 78.896 | 308 | 62 | 2 | 1 | 306 | 1 | 307 | 0.0 | 504 |
Msa0793570 | MtrunA17_Chr1g0205501 | 70.874 | 309 | 84 | 4 | 1 | 306 | 1 | 306 | 2.19e-161 | 451 |
Msa0793570 | MtrunA17_Chr5g0394441 | 91.617 | 167 | 12 | 1 | 140 | 306 | 23 | 187 | 7.24e-110 | 316 |
Msa0793570 | MtrunA17_Chr2g0330031 | 35.455 | 330 | 177 | 7 | 1 | 297 | 46 | 372 | 6.22e-60 | 196 |
Msa0793570 | MtrunA17_Chr5g0394461 | 100.000 | 42 | 0 | 0 | 2 | 43 | 12 | 53 | 7.44e-22 | 86.7 |
Msa0793570 | MtrunA17_Chr1g0205511 | 48.235 | 85 | 40 | 2 | 204 | 286 | 1 | 83 | 2.64e-19 | 80.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0793570 | AT4G14930.1 | 58.333 | 300 | 114 | 5 | 4 | 297 | 11 | 305 | 2.51e-124 | 358 |
Msa0793570 | AT4G14930.2 | 56.989 | 279 | 109 | 5 | 4 | 276 | 11 | 284 | 1.24e-111 | 326 |
Msa0793570 | AT1G72880.2 | 36.076 | 316 | 171 | 5 | 9 | 294 | 63 | 377 | 5.49e-60 | 196 |
Msa0793570 | AT1G72880.1 | 36.076 | 316 | 171 | 5 | 9 | 294 | 63 | 377 | 5.49e-60 | 196 |
Find 73 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGCTTCCTTTGCGGTTTC+TGG | 0.080018 | 5_3:-5534160 | Msa0793570:intron |
GGTAGTCAGTGGCATAAATA+AGG | 0.269395 | 5_3:-5533992 | Msa0793570:CDS |
GTCATATCCGATGACATTAT+TGG | 0.278609 | 5_3:+5532961 | None:intergenic |
GCTTCCGACGAGAGGGGTTT+GGG | 0.282212 | 5_3:+5532325 | None:intergenic |
ATTTGTATGTCCAGGGTTAA+AGG | 0.329046 | 5_3:-5533302 | Msa0793570:intron |
TTAACTTGTTTGACAGCAAC+AGG | 0.330194 | 5_3:+5534196 | None:intergenic |
ATTCTTTATATCAACCAGTA+TGG | 0.333966 | 5_3:+5533220 | None:intergenic |
AGCTTCCGACGAGAGGGGTT+TGG | 0.341404 | 5_3:+5532324 | None:intergenic |
TGCTCCTGGTTTGAGAGCTT+TGG | 0.342858 | 5_3:-5534602 | Msa0793570:CDS |
ATTACTGTTACTCCTCTTGC+TGG | 0.350649 | 5_3:-5532406 | Msa0793570:CDS |
GTCAAACAAGTTAACATTCA+TGG | 0.358879 | 5_3:-5534187 | Msa0793570:CDS |
TTGTAGCCATTCCTCAAAAT+AGG | 0.371094 | 5_3:+5532354 | None:intergenic |
CTCGCAAATAAAAGATGTTC+AGG | 0.372141 | 5_3:+5532889 | None:intergenic |
GGTAAAAGTATCTTTAAGAT+TGG | 0.377853 | 5_3:-5533015 | Msa0793570:CDS |
ACCAGTATGGTGCTTATGAT+TGG | 0.395152 | 5_3:+5533233 | None:intergenic |
GAGAGCTTTGGTTGAATCCC+TGG | 0.400114 | 5_3:-5534590 | Msa0793570:CDS |
AATATACCAGTCATATGAAA+TGG | 0.404590 | 5_3:+5533542 | None:intergenic |
TCCAATCATAAGCACCATAC+TGG | 0.425888 | 5_3:-5533234 | Msa0793570:CDS |
TGGAACCGTTGCTTCCTTTG+CGG | 0.426141 | 5_3:-5534167 | Msa0793570:CDS |
ACCTGGTTTACTTACCAATC+AGG | 0.428530 | 5_3:+5534532 | None:intergenic |
TTATGGTTAGCAACATCGTT+TGG | 0.448421 | 5_3:+5533158 | None:intergenic |
CAATCTCCATTTCATATGAC+TGG | 0.460076 | 5_3:-5533548 | Msa0793570:intron |
ATTTCCTACAACACCTGATC+TGG | 0.463342 | 5_3:-5534013 | Msa0793570:CDS |
ACTACCAGATCAGGTGTTGT+AGG | 0.466354 | 5_3:+5534009 | None:intergenic |
GTTTACTCAGGCACTGTAGC+TGG | 0.466587 | 5_3:-5533603 | Msa0793570:CDS |
AAAGTATCTTTAAGATTGGA+TGG | 0.485897 | 5_3:-5533011 | Msa0793570:CDS |
TCTTAGTCTGTGCTCCTGAT+TGG | 0.486695 | 5_3:-5534546 | Msa0793570:intron |
GGGTTACAAGCTAACAAGGC+AGG | 0.490829 | 5_3:-5533037 | Msa0793570:CDS |
GCCTTCAAGAATGTGTAATC+CGG | 0.499913 | 5_3:+5532517 | None:intergenic |
AGGTGTATCAGTATCAGTAT+TGG | 0.502952 | 5_3:+5532939 | None:intergenic |
GATTACACATTCTTGAAGGC+GGG | 0.514349 | 5_3:-5532514 | Msa0793570:CDS |
GTAGTCAGTGGCATAAATAA+GGG | 0.514796 | 5_3:-5533991 | Msa0793570:CDS |
CCGGCTGATTGCACTTCTCT+CGG | 0.516037 | 5_3:-5534051 | Msa0793570:CDS |
TCCGGATTACACATTCTTGA+AGG | 0.516264 | 5_3:-5532518 | Msa0793570:CDS |
CCGTTAGCCATTGTGTGACA+TGG | 0.521413 | 5_3:-5534225 | Msa0793570:CDS |
AAACGATGTTGCTAACCATA+AGG | 0.528344 | 5_3:-5533156 | Msa0793570:intron |
GAGATGGATGAGGGTAAGCT+AGG | 0.530939 | 5_3:-5534658 | Msa0793570:CDS |
TCATATGAAATGGAGATTGA+AGG | 0.532405 | 5_3:+5533552 | None:intergenic |
TTTCTTCTTTGCAGGTACTC+CGG | 0.534209 | 5_3:-5534070 | Msa0793570:intron |
TGAAGGGATATCATTAAAGA+AGG | 0.534821 | 5_3:+5533569 | None:intergenic |
CATATGAAATGGAGATTGAA+GGG | 0.535556 | 5_3:+5533553 | None:intergenic |
CACTGTAGCTGGAGCTCGAG+AGG | 0.542909 | 5_3:-5533592 | Msa0793570:CDS |
ATTCTGATAACAAACGATGA+TGG | 0.543399 | 5_3:-5534631 | Msa0793570:CDS |
TTCCCTTTCAGTGTTTACTC+AGG | 0.543522 | 5_3:-5533615 | Msa0793570:intron |
ATGCCACTGACTACCAGATC+AGG | 0.544823 | 5_3:+5534000 | None:intergenic |
CTTCCGACGAGAGGGGTTTG+GGG | 0.545820 | 5_3:+5532326 | None:intergenic |
TGTACTTGATCATGACGATC+CGG | 0.547177 | 5_3:-5532536 | Msa0793570:CDS |
TGTTGTAGGAAATAGTGCTC+TGG | 0.558048 | 5_3:+5534023 | None:intergenic |
GCACGAGAGAGACCAGCAAG+AGG | 0.562815 | 5_3:+5532394 | None:intergenic |
CCGAGAGAAGTGCAATCAGC+CGG | 0.562865 | 5_3:+5534051 | None:intergenic |
TCAACCAAAGCTCTCAAACC+AGG | 0.570986 | 5_3:+5534598 | None:intergenic |
CTATAAAGCTTCCGACGAGA+GGG | 0.577851 | 5_3:+5532318 | None:intergenic |
TAAAGAATCAAAGCTACCCT+GGG | 0.585985 | 5_3:-5533205 | Msa0793570:CDS |
GATGATGGTATCGATGCTCC+TGG | 0.590611 | 5_3:-5534616 | Msa0793570:CDS |
AGAAGGACCAATAATGTCAT+CGG | 0.592757 | 5_3:-5532968 | Msa0793570:CDS |
ACTATAAAGCTTCCGACGAG+AGG | 0.593114 | 5_3:+5532317 | None:intergenic |
ATAAAGAATCAAAGCTACCC+TGG | 0.599661 | 5_3:-5533206 | Msa0793570:CDS |
CCATGTCACACAATGGCTAA+CGG | 0.601876 | 5_3:+5534225 | None:intergenic |
ATAAATAAGGGTAGCAACTG+CGG | 0.609893 | 5_3:-5533979 | Msa0793570:CDS |
AAAAGGGTTACAAGCTAACA+AGG | 0.613958 | 5_3:-5533041 | Msa0793570:intron |
GGATTACACATTCTTGAAGG+CGG | 0.620421 | 5_3:-5532515 | Msa0793570:CDS |
CAAGTCACCTCTCAGACAGA+AGG | 0.626825 | 5_3:-5532985 | Msa0793570:CDS |
GGTTACAAGCTAACAAGGCA+GGG | 0.632843 | 5_3:-5533036 | Msa0793570:CDS |
TCTTGCTGGTCTCTCTCGTG+CGG | 0.637394 | 5_3:-5532392 | Msa0793570:CDS |
TATTGGTCCTTCTGTCTGAG+AGG | 0.645859 | 5_3:+5532978 | None:intergenic |
AGAAACCGCAAAGGAAGCAA+CGG | 0.646643 | 5_3:+5534162 | None:intergenic |
TATAAAGCTTCCGACGAGAG+GGG | 0.648568 | 5_3:+5532319 | None:intergenic |
GCAGCAAGAGCAAAGTCGTG+TGG | 0.670936 | 5_3:+5533269 | None:intergenic |
ACACCTGATCTGGTAGTCAG+TGG | 0.675568 | 5_3:-5534003 | Msa0793570:CDS |
GGTGAAGCCATGTCACACAA+TGG | 0.678364 | 5_3:+5534218 | None:intergenic |
TAACTTGTTTGACAGCAACA+GGG | 0.679661 | 5_3:+5534197 | None:intergenic |
CAACTAACCAGAAACCGCAA+AGG | 0.682214 | 5_3:+5534153 | None:intergenic |
GTATCTTTAAGATTGGATGG+AGG | 0.682656 | 5_3:-5533008 | Msa0793570:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTATTTTAAACTAATATAAA+GGG | + | chr5_3:5532639-5532658 | None:intergenic | 10.0% |
!!! | TGTATTTTAAACTAATATAA+AGG | + | chr5_3:5532640-5532659 | None:intergenic | 10.0% |
!!! | ATCTTTTATAACTAATTTAT+TGG | - | chr5_3:5533891-5533910 | Msa0793570:intron | 10.0% |
!!! | TAAGATTTTAAGTAAAAAAA+AGG | + | chr5_3:5534133-5534152 | None:intergenic | 10.0% |
!!! | GTATTTTAAACTAATATAAA+GGG | + | chr5_3:5532639-5532658 | None:intergenic | 10.0% |
!!! | TGTATTTTAAACTAATATAA+AGG | + | chr5_3:5532640-5532659 | None:intergenic | 10.0% |
!!! | ATCTTTTATAACTAATTTAT+TGG | - | chr5_3:5533891-5533910 | Msa0793570:intron | 10.0% |
!!! | TAAGATTTTAAGTAAAAAAA+AGG | + | chr5_3:5534133-5534152 | None:intergenic | 10.0% |
!!! | TCTTTTTGTTAAAGTTATTT+CGG | - | chr5_3:5533285-5533304 | Msa0793570:CDS | 15.0% |
!! | ACAATTATAAGCTAAAAAAT+TGG | + | chr5_3:5533524-5533543 | None:intergenic | 15.0% |
!! | TTAAGTAAAAAAAAGGAAAA+AGG | + | chr5_3:5534126-5534145 | None:intergenic | 15.0% |
!! | TATTACATCATTATTCATTA+GGG | + | chr5_3:5534382-5534401 | None:intergenic | 15.0% |
!! | TTATTACATCATTATTCATT+AGG | + | chr5_3:5534383-5534402 | None:intergenic | 15.0% |
!!! | TCTTTTTGTTAAAGTTATTT+CGG | - | chr5_3:5533285-5533304 | Msa0793570:CDS | 15.0% |
!! | ACAATTATAAGCTAAAAAAT+TGG | + | chr5_3:5533524-5533543 | None:intergenic | 15.0% |
!! | TTAAGTAAAAAAAAGGAAAA+AGG | + | chr5_3:5534126-5534145 | None:intergenic | 15.0% |
!! | TATTACATCATTATTCATTA+GGG | + | chr5_3:5534382-5534401 | None:intergenic | 15.0% |
!! | TTATTACATCATTATTCATT+AGG | + | chr5_3:5534383-5534402 | None:intergenic | 15.0% |
!! | ATTCTTTAATCTCAATCAAA+CGG | + | chr5_3:5532507-5532526 | None:intergenic | 20.0% |
!! | TTTATTATATGACATGTAGA+CGG | - | chr5_3:5532669-5532688 | Msa0793570:intron | 20.0% |
!!! | TCAATAGAAAAATTTTCAAC+AGG | + | chr5_3:5533165-5533184 | None:intergenic | 20.0% |
!! | ATATTCAGTAAATCATAAGA+GGG | + | chr5_3:5533264-5533283 | None:intergenic | 20.0% |
!! | AATATTCAGTAAATCATAAG+AGG | + | chr5_3:5533265-5533284 | None:intergenic | 20.0% |
!! | CTTATAATTGTAACTGATAA+CGG | - | chr5_3:5533533-5533552 | Msa0793570:intron | 20.0% |
!! | TAAGAAGCTATTGTTATAAA+AGG | + | chr5_3:5533625-5533644 | None:intergenic | 20.0% |
!! | TACTATTATTGACCATTTAA+AGG | - | chr5_3:5533646-5533665 | Msa0793570:intron | 20.0% |
!! | ACTTATTACAATATACCTTA+TGG | + | chr5_3:5533835-5533854 | None:intergenic | 20.0% |
!! | CTATGTAGAACTATAAAAAA+GGG | + | chr5_3:5534206-5534225 | None:intergenic | 20.0% |
!!! | AATAATCTCTTAACTTTTGT+AGG | - | chr5_3:5534398-5534417 | Msa0793570:intron | 20.0% |
!! | ATTCTTTAATCTCAATCAAA+CGG | + | chr5_3:5532507-5532526 | None:intergenic | 20.0% |
!! | TTTATTATATGACATGTAGA+CGG | - | chr5_3:5532669-5532688 | Msa0793570:intron | 20.0% |
!!! | TCAATAGAAAAATTTTCAAC+AGG | + | chr5_3:5533165-5533184 | None:intergenic | 20.0% |
!! | ATATTCAGTAAATCATAAGA+GGG | + | chr5_3:5533264-5533283 | None:intergenic | 20.0% |
!! | AATATTCAGTAAATCATAAG+AGG | + | chr5_3:5533265-5533284 | None:intergenic | 20.0% |
!! | CTTATAATTGTAACTGATAA+CGG | - | chr5_3:5533533-5533552 | Msa0793570:intron | 20.0% |
!! | TAAGAAGCTATTGTTATAAA+AGG | + | chr5_3:5533625-5533644 | None:intergenic | 20.0% |
!! | TACTATTATTGACCATTTAA+AGG | - | chr5_3:5533646-5533665 | Msa0793570:intron | 20.0% |
!! | ACTTATTACAATATACCTTA+TGG | + | chr5_3:5533835-5533854 | None:intergenic | 20.0% |
!! | CTATGTAGAACTATAAAAAA+GGG | + | chr5_3:5534206-5534225 | None:intergenic | 20.0% |
!!! | AATAATCTCTTAACTTTTGT+AGG | - | chr5_3:5534398-5534417 | Msa0793570:intron | 20.0% |
! | GACTAAGACATTAAAAAGAT+TGG | + | chr5_3:5532415-5532434 | None:intergenic | 25.0% |
!! | ATTTTGCATTTCATAGCAAA+TGG | - | chr5_3:5533114-5533133 | Msa0793570:intron | 25.0% |
! | CATTTCAAATTTCAAGGAAA+TGG | + | chr5_3:5533240-5533259 | None:intergenic | 25.0% |
! | AATATACCAGTCATATGAAA+TGG | + | chr5_3:5533434-5533453 | None:intergenic | 25.0% |
! | ACATACAAATAGCCTTTAAA+TGG | + | chr5_3:5533661-5533680 | None:intergenic | 25.0% |
! | ATTCTTTATATCAACCAGTA+TGG | + | chr5_3:5533756-5533775 | None:intergenic | 25.0% |
! | TATTCAAAAAACATTTCCCA+GGG | + | chr5_3:5533787-5533806 | None:intergenic | 25.0% |
! | ATATTCAAAAAACATTTCCC+AGG | + | chr5_3:5533788-5533807 | None:intergenic | 25.0% |
!!! | GGTAAAAGTATCTTTAAGAT+TGG | - | chr5_3:5533958-5533977 | Msa0793570:intron | 25.0% |
!!! | AAAGTATCTTTAAGATTGGA+TGG | - | chr5_3:5533962-5533981 | Msa0793570:intron | 25.0% |
! | ACTGATACACCTAAAAATTA+TGG | - | chr5_3:5534045-5534064 | Msa0793570:CDS | 25.0% |
! | GCTATGTAGAACTATAAAAA+AGG | + | chr5_3:5534207-5534226 | None:intergenic | 25.0% |
!! | TCTTAACTTTTGTAGGTAAA+AGG | - | chr5_3:5534405-5534424 | Msa0793570:intron | 25.0% |
! | GACTAAGACATTAAAAAGAT+TGG | + | chr5_3:5532415-5532434 | None:intergenic | 25.0% |
!! | ATTTTGCATTTCATAGCAAA+TGG | - | chr5_3:5533114-5533133 | Msa0793570:intron | 25.0% |
! | CATTTCAAATTTCAAGGAAA+TGG | + | chr5_3:5533240-5533259 | None:intergenic | 25.0% |
! | AATATACCAGTCATATGAAA+TGG | + | chr5_3:5533434-5533453 | None:intergenic | 25.0% |
! | ACATACAAATAGCCTTTAAA+TGG | + | chr5_3:5533661-5533680 | None:intergenic | 25.0% |
! | ATTCTTTATATCAACCAGTA+TGG | + | chr5_3:5533756-5533775 | None:intergenic | 25.0% |
! | TATTCAAAAAACATTTCCCA+GGG | + | chr5_3:5533787-5533806 | None:intergenic | 25.0% |
! | ATATTCAAAAAACATTTCCC+AGG | + | chr5_3:5533788-5533807 | None:intergenic | 25.0% |
!!! | GGTAAAAGTATCTTTAAGAT+TGG | - | chr5_3:5533958-5533977 | Msa0793570:intron | 25.0% |
!!! | AAAGTATCTTTAAGATTGGA+TGG | - | chr5_3:5533962-5533981 | Msa0793570:intron | 25.0% |
! | ACTGATACACCTAAAAATTA+TGG | - | chr5_3:5534045-5534064 | Msa0793570:CDS | 25.0% |
! | GCTATGTAGAACTATAAAAA+AGG | + | chr5_3:5534207-5534226 | None:intergenic | 25.0% |
!! | TCTTAACTTTTGTAGGTAAA+AGG | - | chr5_3:5534405-5534424 | Msa0793570:intron | 25.0% |
ATTCTGATAACAAACGATGA+TGG | - | chr5_3:5532342-5532361 | Msa0793570:CDS | 30.0% | |
CTATATGAATTTGATCACCA+CGG | + | chr5_3:5532468-5532487 | None:intergenic | 30.0% | |
TCTATATGATCTTGATCCAA+CGG | - | chr5_3:5532539-5532558 | Msa0793570:CDS | 30.0% | |
GATGTGAATTCTTTCATGTT+TGG | - | chr5_3:5532567-5532586 | Msa0793570:intron | 30.0% | |
!!! | CTTGCAACAATTTTTGAAAC+AGG | + | chr5_3:5532606-5532625 | None:intergenic | 30.0% |
GTCAAACAAGTTAACATTCA+TGG | - | chr5_3:5532786-5532805 | Msa0793570:intron | 30.0% | |
TGAGCTTATGAAAATGGAAA+TGG | + | chr5_3:5532861-5532880 | None:intergenic | 30.0% | |
TGCTTAAAGTCTAAAAAAGG+CGG | + | chr5_3:5533059-5533078 | None:intergenic | 30.0% | |
CACTGCTTAAAGTCTAAAAA+AGG | + | chr5_3:5533062-5533081 | None:intergenic | 30.0% | |
TGAAGGGATATCATTAAAGA+AGG | + | chr5_3:5533407-5533426 | None:intergenic | 30.0% | |
CATATGAAATGGAGATTGAA+GGG | + | chr5_3:5533423-5533442 | None:intergenic | 30.0% | |
TCATATGAAATGGAGATTGA+AGG | + | chr5_3:5533424-5533443 | None:intergenic | 30.0% | |
! | ATATTTTCAACATGCTTCTG+TGG | - | chr5_3:5533449-5533468 | Msa0793570:intron | 30.0% |
AATGAATGTCTCGAGAATTA+TGG | - | chr5_3:5533556-5533575 | Msa0793570:CDS | 30.0% | |
TGTAGAACTATAAAAAAGGG+TGG | + | chr5_3:5534203-5534222 | None:intergenic | 30.0% | |
GAATATGTTGTAATAGACTG+AGG | - | chr5_3:5534241-5534260 | Msa0793570:intron | 30.0% | |
CTAAACAATCCTAAACTACT+TGG | - | chr5_3:5534322-5534341 | Msa0793570:intron | 30.0% | |
TCATTATTCATTAGGGAAAG+AGG | + | chr5_3:5534375-5534394 | None:intergenic | 30.0% | |
ATTCTGATAACAAACGATGA+TGG | - | chr5_3:5532342-5532361 | Msa0793570:CDS | 30.0% | |
CTATATGAATTTGATCACCA+CGG | + | chr5_3:5532468-5532487 | None:intergenic | 30.0% | |
TCTATATGATCTTGATCCAA+CGG | - | chr5_3:5532539-5532558 | Msa0793570:CDS | 30.0% | |
GATGTGAATTCTTTCATGTT+TGG | - | chr5_3:5532567-5532586 | Msa0793570:intron | 30.0% | |
!!! | CTTGCAACAATTTTTGAAAC+AGG | + | chr5_3:5532606-5532625 | None:intergenic | 30.0% |
GTCAAACAAGTTAACATTCA+TGG | - | chr5_3:5532786-5532805 | Msa0793570:intron | 30.0% | |
TGAGCTTATGAAAATGGAAA+TGG | + | chr5_3:5532861-5532880 | None:intergenic | 30.0% | |
TGCTTAAAGTCTAAAAAAGG+CGG | + | chr5_3:5533059-5533078 | None:intergenic | 30.0% | |
CACTGCTTAAAGTCTAAAAA+AGG | + | chr5_3:5533062-5533081 | None:intergenic | 30.0% | |
TGAAGGGATATCATTAAAGA+AGG | + | chr5_3:5533407-5533426 | None:intergenic | 30.0% | |
CATATGAAATGGAGATTGAA+GGG | + | chr5_3:5533423-5533442 | None:intergenic | 30.0% | |
TCATATGAAATGGAGATTGA+AGG | + | chr5_3:5533424-5533443 | None:intergenic | 30.0% | |
! | ATATTTTCAACATGCTTCTG+TGG | - | chr5_3:5533449-5533468 | Msa0793570:intron | 30.0% |
AATGAATGTCTCGAGAATTA+TGG | - | chr5_3:5533556-5533575 | Msa0793570:CDS | 30.0% | |
TGTAGAACTATAAAAAAGGG+TGG | + | chr5_3:5534203-5534222 | None:intergenic | 30.0% | |
GAATATGTTGTAATAGACTG+AGG | - | chr5_3:5534241-5534260 | Msa0793570:intron | 30.0% | |
CTAAACAATCCTAAACTACT+TGG | - | chr5_3:5534322-5534341 | Msa0793570:intron | 30.0% | |
TCATTATTCATTAGGGAAAG+AGG | + | chr5_3:5534375-5534394 | None:intergenic | 30.0% | |
!! | AAAAAGATTGGTGTTGACCA+GGG | + | chr5_3:5532403-5532422 | None:intergenic | 35.0% |
!! | TAAAAAGATTGGTGTTGACC+AGG | + | chr5_3:5532404-5532423 | None:intergenic | 35.0% |
!! | TAACTTGTTTGACAGCAACA+GGG | + | chr5_3:5532779-5532798 | None:intergenic | 35.0% |
!! | TTAACTTGTTTGACAGCAAC+AGG | + | chr5_3:5532780-5532799 | None:intergenic | 35.0% |
TGAGCTTGAGCTTATGAAAA+TGG | + | chr5_3:5532867-5532886 | None:intergenic | 35.0% | |
!! | CGACTATTTTTCTTCTTTGC+AGG | - | chr5_3:5532895-5532914 | Msa0793570:CDS | 35.0% |
GTAGTCAGTGGCATAAATAA+GGG | - | chr5_3:5532982-5533001 | Msa0793570:CDS | 35.0% | |
ATAAATAAGGGTAGCAACTG+CGG | - | chr5_3:5532994-5533013 | Msa0793570:CDS | 35.0% | |
CTTAAAGTCTAAAAAAGGCG+GGG | + | chr5_3:5533057-5533076 | None:intergenic | 35.0% | |
GCTTAAAGTCTAAAAAAGGC+GGG | + | chr5_3:5533058-5533077 | None:intergenic | 35.0% | |
GAGGGTCATTTCAAATTTCA+AGG | + | chr5_3:5533246-5533265 | None:intergenic | 35.0% | |
TAGACAGAACAGAACAACTA+TGG | + | chr5_3:5533337-5533356 | None:intergenic | 35.0% | |
CAATCTCCATTTCATATGAC+TGG | - | chr5_3:5533425-5533444 | Msa0793570:intron | 35.0% | |
TAAAGGCTATTTGTATGTCC+AGG | - | chr5_3:5533663-5533682 | Msa0793570:intron | 35.0% | |
AAAGGCTATTTGTATGTCCA+GGG | - | chr5_3:5533664-5533683 | Msa0793570:intron | 35.0% | |
ATTTGTATGTCCAGGGTTAA+AGG | - | chr5_3:5533671-5533690 | Msa0793570:intron | 35.0% | |
ATTACTCTTTCCTTTAACCC+TGG | + | chr5_3:5533684-5533703 | None:intergenic | 35.0% | |
ATAAAGAATCAAAGCTACCC+TGG | - | chr5_3:5533767-5533786 | Msa0793570:intron | 35.0% | |
TAAAGAATCAAAGCTACCCT+GGG | - | chr5_3:5533768-5533787 | Msa0793570:intron | 35.0% | |
TTATGGTTAGCAACATCGTT+TGG | + | chr5_3:5533818-5533837 | None:intergenic | 35.0% | |
AAACGATGTTGCTAACCATA+AGG | - | chr5_3:5533817-5533836 | Msa0793570:intron | 35.0% | |
AAAAGGGTTACAAGCTAACA+AGG | - | chr5_3:5533932-5533951 | Msa0793570:intron | 35.0% | |
!! | GTATCTTTAAGATTGGATGG+AGG | - | chr5_3:5533965-5533984 | Msa0793570:intron | 35.0% |
AGAAGGACCAATAATGTCAT+CGG | - | chr5_3:5534005-5534024 | Msa0793570:CDS | 35.0% | |
GTCATATCCGATGACATTAT+TGG | + | chr5_3:5534015-5534034 | None:intergenic | 35.0% | |
AGGTGTATCAGTATCAGTAT+TGG | + | chr5_3:5534037-5534056 | None:intergenic | 35.0% | |
! | GATGACGTGCCATAATTTTT+AGG | + | chr5_3:5534057-5534076 | None:intergenic | 35.0% |
CTCGCAAATAAAAGATGTTC+AGG | + | chr5_3:5534087-5534106 | None:intergenic | 35.0% | |
!! | ACATCTTTTATTTGCGAGAG+AGG | - | chr5_3:5534089-5534108 | Msa0793570:intron | 35.0% |
ACAATCCTAAACTACTTGGA+TGG | - | chr5_3:5534326-5534345 | Msa0793570:intron | 35.0% | |
AATGTCCATCCAAGTAGTTT+AGG | + | chr5_3:5534334-5534353 | None:intergenic | 35.0% | |
TTATTCATTAGGGAAAGAGG+AGG | + | chr5_3:5534372-5534391 | None:intergenic | 35.0% | |
! | AGATTGTCAGACCTATTTTG+AGG | - | chr5_3:5534608-5534627 | Msa0793570:CDS | 35.0% |
TTGTAGCCATTCCTCAAAAT+AGG | + | chr5_3:5534622-5534641 | None:intergenic | 35.0% | |
!! | AAAAAGATTGGTGTTGACCA+GGG | + | chr5_3:5532403-5532422 | None:intergenic | 35.0% |
!! | TAAAAAGATTGGTGTTGACC+AGG | + | chr5_3:5532404-5532423 | None:intergenic | 35.0% |
!! | TAACTTGTTTGACAGCAACA+GGG | + | chr5_3:5532779-5532798 | None:intergenic | 35.0% |
!! | TTAACTTGTTTGACAGCAAC+AGG | + | chr5_3:5532780-5532799 | None:intergenic | 35.0% |
TGAGCTTGAGCTTATGAAAA+TGG | + | chr5_3:5532867-5532886 | None:intergenic | 35.0% | |
!! | CGACTATTTTTCTTCTTTGC+AGG | - | chr5_3:5532895-5532914 | Msa0793570:CDS | 35.0% |
GTAGTCAGTGGCATAAATAA+GGG | - | chr5_3:5532982-5533001 | Msa0793570:CDS | 35.0% | |
ATAAATAAGGGTAGCAACTG+CGG | - | chr5_3:5532994-5533013 | Msa0793570:CDS | 35.0% | |
CTTAAAGTCTAAAAAAGGCG+GGG | + | chr5_3:5533057-5533076 | None:intergenic | 35.0% | |
GCTTAAAGTCTAAAAAAGGC+GGG | + | chr5_3:5533058-5533077 | None:intergenic | 35.0% | |
GAGGGTCATTTCAAATTTCA+AGG | + | chr5_3:5533246-5533265 | None:intergenic | 35.0% | |
TAGACAGAACAGAACAACTA+TGG | + | chr5_3:5533337-5533356 | None:intergenic | 35.0% | |
CAATCTCCATTTCATATGAC+TGG | - | chr5_3:5533425-5533444 | Msa0793570:intron | 35.0% | |
TAAAGGCTATTTGTATGTCC+AGG | - | chr5_3:5533663-5533682 | Msa0793570:intron | 35.0% | |
AAAGGCTATTTGTATGTCCA+GGG | - | chr5_3:5533664-5533683 | Msa0793570:intron | 35.0% | |
ATTTGTATGTCCAGGGTTAA+AGG | - | chr5_3:5533671-5533690 | Msa0793570:intron | 35.0% | |
ATTACTCTTTCCTTTAACCC+TGG | + | chr5_3:5533684-5533703 | None:intergenic | 35.0% | |
ATAAAGAATCAAAGCTACCC+TGG | - | chr5_3:5533767-5533786 | Msa0793570:intron | 35.0% | |
TAAAGAATCAAAGCTACCCT+GGG | - | chr5_3:5533768-5533787 | Msa0793570:intron | 35.0% | |
TTATGGTTAGCAACATCGTT+TGG | + | chr5_3:5533818-5533837 | None:intergenic | 35.0% | |
AAACGATGTTGCTAACCATA+AGG | - | chr5_3:5533817-5533836 | Msa0793570:intron | 35.0% | |
AAAAGGGTTACAAGCTAACA+AGG | - | chr5_3:5533932-5533951 | Msa0793570:intron | 35.0% | |
!! | GTATCTTTAAGATTGGATGG+AGG | - | chr5_3:5533965-5533984 | Msa0793570:intron | 35.0% |
AGAAGGACCAATAATGTCAT+CGG | - | chr5_3:5534005-5534024 | Msa0793570:CDS | 35.0% | |
GTCATATCCGATGACATTAT+TGG | + | chr5_3:5534015-5534034 | None:intergenic | 35.0% | |
AGGTGTATCAGTATCAGTAT+TGG | + | chr5_3:5534037-5534056 | None:intergenic | 35.0% | |
! | GATGACGTGCCATAATTTTT+AGG | + | chr5_3:5534057-5534076 | None:intergenic | 35.0% |
CTCGCAAATAAAAGATGTTC+AGG | + | chr5_3:5534087-5534106 | None:intergenic | 35.0% | |
!! | ACATCTTTTATTTGCGAGAG+AGG | - | chr5_3:5534089-5534108 | Msa0793570:intron | 35.0% |
ACAATCCTAAACTACTTGGA+TGG | - | chr5_3:5534326-5534345 | Msa0793570:intron | 35.0% | |
AATGTCCATCCAAGTAGTTT+AGG | + | chr5_3:5534334-5534353 | None:intergenic | 35.0% | |
TTATTCATTAGGGAAAGAGG+AGG | + | chr5_3:5534372-5534391 | None:intergenic | 35.0% | |
! | AGATTGTCAGACCTATTTTG+AGG | - | chr5_3:5534608-5534627 | Msa0793570:CDS | 35.0% |
TTGTAGCCATTCCTCAAAAT+AGG | + | chr5_3:5534622-5534641 | None:intergenic | 35.0% | |
TCCTGATTGGTAAGTAAACC+AGG | - | chr5_3:5532440-5532459 | Msa0793570:intron | 40.0% | |
ACCTGGTTTACTTACCAATC+AGG | + | chr5_3:5532444-5532463 | None:intergenic | 40.0% | |
GAATTCACATCAATGACCGT+TGG | + | chr5_3:5532558-5532577 | None:intergenic | 40.0% | |
TTTCTTCTTTGCAGGTACTC+CGG | - | chr5_3:5532903-5532922 | Msa0793570:CDS | 40.0% | |
TGTTGTAGGAAATAGTGCTC+TGG | + | chr5_3:5532953-5532972 | None:intergenic | 40.0% | |
ATTTCCTACAACACCTGATC+TGG | - | chr5_3:5532960-5532979 | Msa0793570:CDS | 40.0% | |
GGTAGTCAGTGGCATAAATA+AGG | - | chr5_3:5532981-5533000 | Msa0793570:CDS | 40.0% | |
TCGTCATCTGTTCATAGCTT+AGG | + | chr5_3:5533212-5533231 | None:intergenic | 40.0% | |
TTCCCTTTCAGTGTTTACTC+AGG | - | chr5_3:5533358-5533377 | Msa0793570:intron | 40.0% | |
TGCCTGAGTAAACACTGAAA+GGG | + | chr5_3:5533363-5533382 | None:intergenic | 40.0% | |
TCCAATCATAAGCACCATAC+TGG | - | chr5_3:5533739-5533758 | Msa0793570:intron | 40.0% | |
ACCAGTATGGTGCTTATGAT+TGG | + | chr5_3:5533743-5533762 | None:intergenic | 40.0% | |
!! | CTTTTATTTGCGAGAGAGGT+AGG | - | chr5_3:5534093-5534112 | Msa0793570:intron | 40.0% |
! | GTTTAGTCTTCCAGAGAACT+TGG | + | chr5_3:5534308-5534327 | None:intergenic | 40.0% |
TGTACTTGATCATGACGATC+CGG | - | chr5_3:5534437-5534456 | Msa0793570:intron | 40.0% | |
TCCGGATTACACATTCTTGA+AGG | - | chr5_3:5534455-5534474 | Msa0793570:intron | 40.0% | |
GCCTTCAAGAATGTGTAATC+CGG | + | chr5_3:5534459-5534478 | None:intergenic | 40.0% | |
GGATTACACATTCTTGAAGG+CGG | - | chr5_3:5534458-5534477 | Msa0793570:intron | 40.0% | |
GATTACACATTCTTGAAGGC+GGG | - | chr5_3:5534459-5534478 | Msa0793570:intron | 40.0% | |
ATTACTGTTACTCCTCTTGC+TGG | - | chr5_3:5534567-5534586 | Msa0793570:CDS | 40.0% | |
!! | GTCAGACCTATTTTGAGGAA+TGG | - | chr5_3:5534613-5534632 | Msa0793570:CDS | 40.0% |
TCCTGATTGGTAAGTAAACC+AGG | - | chr5_3:5532440-5532459 | Msa0793570:intron | 40.0% | |
ACCTGGTTTACTTACCAATC+AGG | + | chr5_3:5532444-5532463 | None:intergenic | 40.0% | |
GAATTCACATCAATGACCGT+TGG | + | chr5_3:5532558-5532577 | None:intergenic | 40.0% | |
TTTCTTCTTTGCAGGTACTC+CGG | - | chr5_3:5532903-5532922 | Msa0793570:CDS | 40.0% | |
TGTTGTAGGAAATAGTGCTC+TGG | + | chr5_3:5532953-5532972 | None:intergenic | 40.0% | |
ATTTCCTACAACACCTGATC+TGG | - | chr5_3:5532960-5532979 | Msa0793570:CDS | 40.0% | |
GGTAGTCAGTGGCATAAATA+AGG | - | chr5_3:5532981-5533000 | Msa0793570:CDS | 40.0% | |
TCGTCATCTGTTCATAGCTT+AGG | + | chr5_3:5533212-5533231 | None:intergenic | 40.0% | |
TTCCCTTTCAGTGTTTACTC+AGG | - | chr5_3:5533358-5533377 | Msa0793570:intron | 40.0% | |
TGCCTGAGTAAACACTGAAA+GGG | + | chr5_3:5533363-5533382 | None:intergenic | 40.0% | |
TCCAATCATAAGCACCATAC+TGG | - | chr5_3:5533739-5533758 | Msa0793570:intron | 40.0% | |
ACCAGTATGGTGCTTATGAT+TGG | + | chr5_3:5533743-5533762 | None:intergenic | 40.0% | |
!! | CTTTTATTTGCGAGAGAGGT+AGG | - | chr5_3:5534093-5534112 | Msa0793570:intron | 40.0% |
! | GTTTAGTCTTCCAGAGAACT+TGG | + | chr5_3:5534308-5534327 | None:intergenic | 40.0% |
TGTACTTGATCATGACGATC+CGG | - | chr5_3:5534437-5534456 | Msa0793570:intron | 40.0% | |
TCCGGATTACACATTCTTGA+AGG | - | chr5_3:5534455-5534474 | Msa0793570:intron | 40.0% | |
GCCTTCAAGAATGTGTAATC+CGG | + | chr5_3:5534459-5534478 | None:intergenic | 40.0% | |
GGATTACACATTCTTGAAGG+CGG | - | chr5_3:5534458-5534477 | Msa0793570:intron | 40.0% | |
GATTACACATTCTTGAAGGC+GGG | - | chr5_3:5534459-5534478 | Msa0793570:intron | 40.0% | |
ATTACTGTTACTCCTCTTGC+TGG | - | chr5_3:5534567-5534586 | Msa0793570:CDS | 40.0% | |
!! | GTCAGACCTATTTTGAGGAA+TGG | - | chr5_3:5534613-5534632 | Msa0793570:CDS | 40.0% |
TCAACCAAAGCTCTCAAACC+AGG | + | chr5_3:5532378-5532397 | None:intergenic | 45.0% | |
TCTTAGTCTGTGCTCCTGAT+TGG | - | chr5_3:5532427-5532446 | Msa0793570:intron | 45.0% | |
AATTTGATCACCACGGAACC+TGG | + | chr5_3:5532461-5532480 | None:intergenic | 45.0% | |
CCATGTCACACAATGGCTAA+CGG | + | chr5_3:5532751-5532770 | None:intergenic | 45.0% | |
AGAAACCGCAAAGGAAGCAA+CGG | + | chr5_3:5532814-5532833 | None:intergenic | 45.0% | |
CAACTAACCAGAAACCGCAA+AGG | + | chr5_3:5532823-5532842 | None:intergenic | 45.0% | |
!! | CTTTGCGGTTTCTGGTTAGT+TGG | - | chr5_3:5532821-5532840 | Msa0793570:intron | 45.0% |
! | ACTACCAGATCAGGTGTTGT+AGG | + | chr5_3:5532967-5532986 | None:intergenic | 45.0% |
GTGCCTGAGTAAACACTGAA+AGG | + | chr5_3:5533364-5533383 | None:intergenic | 45.0% | |
! | TATTGGTTGTCGTCTGTGCA+TGG | - | chr5_3:5533908-5533927 | Msa0793570:intron | 45.0% |
TGTCGTCTGTGCATGGAAAA+AGG | - | chr5_3:5533915-5533934 | Msa0793570:intron | 45.0% | |
GTCGTCTGTGCATGGAAAAA+GGG | - | chr5_3:5533916-5533935 | Msa0793570:intron | 45.0% | |
GGTTACAAGCTAACAAGGCA+GGG | - | chr5_3:5533937-5533956 | Msa0793570:intron | 45.0% | |
TATTGGTCCTTCTGTCTGAG+AGG | + | chr5_3:5533998-5534017 | None:intergenic | 45.0% | |
AAAGGGTGGAGTTCATCTGA+AGG | + | chr5_3:5534189-5534208 | None:intergenic | 45.0% | |
!! | GAAGTTGATGCCAAGTTCTC+TGG | - | chr5_3:5534295-5534314 | Msa0793570:intron | 45.0% |
TATAAAGCTTCCGACGAGAG+GGG | + | chr5_3:5534657-5534676 | None:intergenic | 45.0% | |
CTATAAAGCTTCCGACGAGA+GGG | + | chr5_3:5534658-5534677 | None:intergenic | 45.0% | |
TCAACCAAAGCTCTCAAACC+AGG | + | chr5_3:5532378-5532397 | None:intergenic | 45.0% | |
TCTTAGTCTGTGCTCCTGAT+TGG | - | chr5_3:5532427-5532446 | Msa0793570:intron | 45.0% | |
AATTTGATCACCACGGAACC+TGG | + | chr5_3:5532461-5532480 | None:intergenic | 45.0% | |
CCATGTCACACAATGGCTAA+CGG | + | chr5_3:5532751-5532770 | None:intergenic | 45.0% | |
AGAAACCGCAAAGGAAGCAA+CGG | + | chr5_3:5532814-5532833 | None:intergenic | 45.0% | |
CAACTAACCAGAAACCGCAA+AGG | + | chr5_3:5532823-5532842 | None:intergenic | 45.0% | |
!! | CTTTGCGGTTTCTGGTTAGT+TGG | - | chr5_3:5532821-5532840 | Msa0793570:intron | 45.0% |
! | ACTACCAGATCAGGTGTTGT+AGG | + | chr5_3:5532967-5532986 | None:intergenic | 45.0% |
GTGCCTGAGTAAACACTGAA+AGG | + | chr5_3:5533364-5533383 | None:intergenic | 45.0% | |
! | TATTGGTTGTCGTCTGTGCA+TGG | - | chr5_3:5533908-5533927 | Msa0793570:intron | 45.0% |
TGTCGTCTGTGCATGGAAAA+AGG | - | chr5_3:5533915-5533934 | Msa0793570:intron | 45.0% | |
GTCGTCTGTGCATGGAAAAA+GGG | - | chr5_3:5533916-5533935 | Msa0793570:intron | 45.0% | |
GGTTACAAGCTAACAAGGCA+GGG | - | chr5_3:5533937-5533956 | Msa0793570:intron | 45.0% | |
TATTGGTCCTTCTGTCTGAG+AGG | + | chr5_3:5533998-5534017 | None:intergenic | 45.0% | |
AAAGGGTGGAGTTCATCTGA+AGG | + | chr5_3:5534189-5534208 | None:intergenic | 45.0% | |
!! | GAAGTTGATGCCAAGTTCTC+TGG | - | chr5_3:5534295-5534314 | Msa0793570:intron | 45.0% |
TATAAAGCTTCCGACGAGAG+GGG | + | chr5_3:5534657-5534676 | None:intergenic | 45.0% | |
CTATAAAGCTTCCGACGAGA+GGG | + | chr5_3:5534658-5534677 | None:intergenic | 45.0% | |
!! | GATGATGGTATCGATGCTCC+TGG | - | chr5_3:5532357-5532376 | Msa0793570:CDS | 50.0% |
! | TGCTCCTGGTTTGAGAGCTT+TGG | - | chr5_3:5532371-5532390 | Msa0793570:CDS | 50.0% |
! | GAGAGCTTTGGTTGAATCCC+TGG | - | chr5_3:5532383-5532402 | Msa0793570:CDS | 50.0% |
GGTAAGTAAACCAGGTTCCG+TGG | - | chr5_3:5532448-5532467 | Msa0793570:intron | 50.0% | |
CCGTTAGCCATTGTGTGACA+TGG | - | chr5_3:5532748-5532767 | Msa0793570:intron | 50.0% | |
GGTGAAGCCATGTCACACAA+TGG | + | chr5_3:5532758-5532777 | None:intergenic | 50.0% | |
TGGAACCGTTGCTTCCTTTG+CGG | - | chr5_3:5532806-5532825 | Msa0793570:intron | 50.0% | |
GTTGCTTCCTTTGCGGTTTC+TGG | - | chr5_3:5532813-5532832 | Msa0793570:intron | 50.0% | |
ACACCTGATCTGGTAGTCAG+TGG | - | chr5_3:5532970-5532989 | Msa0793570:CDS | 50.0% | |
! | ATGCCACTGACTACCAGATC+AGG | + | chr5_3:5532976-5532995 | None:intergenic | 50.0% |
CTAAAAAAGGCGGGGACATG+AGG | + | chr5_3:5533049-5533068 | None:intergenic | 50.0% | |
! | GTTTACTCAGGCACTGTAGC+TGG | - | chr5_3:5533370-5533389 | Msa0793570:intron | 50.0% |
GGGTTACAAGCTAACAAGGC+AGG | - | chr5_3:5533936-5533955 | Msa0793570:intron | 50.0% | |
CAAGTCACCTCTCAGACAGA+AGG | - | chr5_3:5533988-5534007 | Msa0793570:CDS | 50.0% | |
!! | GATGATGGTATCGATGCTCC+TGG | - | chr5_3:5532357-5532376 | Msa0793570:CDS | 50.0% |
! | TGCTCCTGGTTTGAGAGCTT+TGG | - | chr5_3:5532371-5532390 | Msa0793570:CDS | 50.0% |
! | GAGAGCTTTGGTTGAATCCC+TGG | - | chr5_3:5532383-5532402 | Msa0793570:CDS | 50.0% |
GGTAAGTAAACCAGGTTCCG+TGG | - | chr5_3:5532448-5532467 | Msa0793570:intron | 50.0% | |
CCGTTAGCCATTGTGTGACA+TGG | - | chr5_3:5532748-5532767 | Msa0793570:intron | 50.0% | |
GGTGAAGCCATGTCACACAA+TGG | + | chr5_3:5532758-5532777 | None:intergenic | 50.0% | |
TGGAACCGTTGCTTCCTTTG+CGG | - | chr5_3:5532806-5532825 | Msa0793570:intron | 50.0% | |
GTTGCTTCCTTTGCGGTTTC+TGG | - | chr5_3:5532813-5532832 | Msa0793570:intron | 50.0% | |
ACACCTGATCTGGTAGTCAG+TGG | - | chr5_3:5532970-5532989 | Msa0793570:CDS | 50.0% | |
! | ATGCCACTGACTACCAGATC+AGG | + | chr5_3:5532976-5532995 | None:intergenic | 50.0% |
CTAAAAAAGGCGGGGACATG+AGG | + | chr5_3:5533049-5533068 | None:intergenic | 50.0% | |
! | GTTTACTCAGGCACTGTAGC+TGG | - | chr5_3:5533370-5533389 | Msa0793570:intron | 50.0% |
GGGTTACAAGCTAACAAGGC+AGG | - | chr5_3:5533936-5533955 | Msa0793570:intron | 50.0% | |
CAAGTCACCTCTCAGACAGA+AGG | - | chr5_3:5533988-5534007 | Msa0793570:CDS | 50.0% | |
! | CCGAGAGAAGTGCAATCAGC+CGG | + | chr5_3:5532925-5532944 | None:intergenic | 55.0% |
CCGGCTGATTGCACTTCTCT+CGG | - | chr5_3:5532922-5532941 | Msa0793570:CDS | 55.0% | |
AAAAAGGCGGGGACATGAGG+AGG | + | chr5_3:5533046-5533065 | None:intergenic | 55.0% | |
GCAGCAAGAGCAAAGTCGTG+TGG | + | chr5_3:5533707-5533726 | None:intergenic | 55.0% | |
AAGAGGAGGCGAGGAGGATT+AGG | + | chr5_3:5534358-5534377 | None:intergenic | 55.0% | |
CATTAGGGAAAGAGGAGGCG+AGG | + | chr5_3:5534367-5534386 | None:intergenic | 55.0% | |
! | TCTTGCTGGTCTCTCTCGTG+CGG | - | chr5_3:5534581-5534600 | Msa0793570:CDS | 55.0% |
! | CCGAGAGAAGTGCAATCAGC+CGG | + | chr5_3:5532925-5532944 | None:intergenic | 55.0% |
CCGGCTGATTGCACTTCTCT+CGG | - | chr5_3:5532922-5532941 | Msa0793570:CDS | 55.0% | |
AAAAAGGCGGGGACATGAGG+AGG | + | chr5_3:5533046-5533065 | None:intergenic | 55.0% | |
GCAGCAAGAGCAAAGTCGTG+TGG | + | chr5_3:5533707-5533726 | None:intergenic | 55.0% | |
AAGAGGAGGCGAGGAGGATT+AGG | + | chr5_3:5534358-5534377 | None:intergenic | 55.0% | |
CATTAGGGAAAGAGGAGGCG+AGG | + | chr5_3:5534367-5534386 | None:intergenic | 55.0% | |
! | TCTTGCTGGTCTCTCTCGTG+CGG | - | chr5_3:5534581-5534600 | Msa0793570:CDS | 55.0% |
CACTGTAGCTGGAGCTCGAG+AGG | - | chr5_3:5533381-5533400 | Msa0793570:intron | 60.0% | |
TAGGGAAAGAGGAGGCGAGG+AGG | + | chr5_3:5534364-5534383 | None:intergenic | 60.0% | |
GCACGAGAGAGACCAGCAAG+AGG | + | chr5_3:5534582-5534601 | None:intergenic | 60.0% | |
TGTCCCCAAACCCCTCTCGT+CGG | - | chr5_3:5534644-5534663 | Msa0793570:CDS | 60.0% | |
CTTCCGACGAGAGGGGTTTG+GGG | + | chr5_3:5534650-5534669 | None:intergenic | 60.0% | |
GCTTCCGACGAGAGGGGTTT+GGG | + | chr5_3:5534651-5534670 | None:intergenic | 60.0% | |
AGCTTCCGACGAGAGGGGTT+TGG | + | chr5_3:5534652-5534671 | None:intergenic | 60.0% | |
CACTGTAGCTGGAGCTCGAG+AGG | - | chr5_3:5533381-5533400 | Msa0793570:intron | 60.0% | |
TAGGGAAAGAGGAGGCGAGG+AGG | + | chr5_3:5534364-5534383 | None:intergenic | 60.0% | |
GCACGAGAGAGACCAGCAAG+AGG | + | chr5_3:5534582-5534601 | None:intergenic | 60.0% | |
TGTCCCCAAACCCCTCTCGT+CGG | - | chr5_3:5534644-5534663 | Msa0793570:CDS | 60.0% | |
CTTCCGACGAGAGGGGTTTG+GGG | + | chr5_3:5534650-5534669 | None:intergenic | 60.0% | |
GCTTCCGACGAGAGGGGTTT+GGG | + | chr5_3:5534651-5534670 | None:intergenic | 60.0% | |
AGCTTCCGACGAGAGGGGTT+TGG | + | chr5_3:5534652-5534671 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 5532318 | 5534677 | 5532318 | ID=Msa0793570;Name=Msa0793570 |
chr5_3 | mRNA | 5532318 | 5534677 | 5532318 | ID=Msa0793570-mRNA-1;Parent=Msa0793570;Name=Msa0793570-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0.28|0.12|1|1|1|8|0|306 |
chr5_3 | exon | 5534547 | 5534677 | 5534547 | ID=Msa0793570-mRNA-1:exon:2196;Parent=Msa0793570-mRNA-1 |
chr5_3 | exon | 5534161 | 5534258 | 5534161 | ID=Msa0793570-mRNA-1:exon:2195;Parent=Msa0793570-mRNA-1 |
chr5_3 | exon | 5533970 | 5534078 | 5533970 | ID=Msa0793570-mRNA-1:exon:2194;Parent=Msa0793570-mRNA-1 |
chr5_3 | exon | 5533549 | 5533626 | 5533549 | ID=Msa0793570-mRNA-1:exon:2193;Parent=Msa0793570-mRNA-1 |
chr5_3 | exon | 5533157 | 5533310 | 5533157 | ID=Msa0793570-mRNA-1:exon:2192;Parent=Msa0793570-mRNA-1 |
chr5_3 | exon | 5532885 | 5533058 | 5532885 | ID=Msa0793570-mRNA-1:exon:2191;Parent=Msa0793570-mRNA-1 |
chr5_3 | exon | 5532510 | 5532575 | 5532510 | ID=Msa0793570-mRNA-1:exon:2190;Parent=Msa0793570-mRNA-1 |
chr5_3 | exon | 5532318 | 5532428 | 5532318 | ID=Msa0793570-mRNA-1:exon:2189;Parent=Msa0793570-mRNA-1 |
chr5_3 | CDS | 5534547 | 5534677 | 5534547 | ID=Msa0793570-mRNA-1:cds;Parent=Msa0793570-mRNA-1 |
chr5_3 | CDS | 5534161 | 5534258 | 5534161 | ID=Msa0793570-mRNA-1:cds;Parent=Msa0793570-mRNA-1 |
chr5_3 | CDS | 5533970 | 5534078 | 5533970 | ID=Msa0793570-mRNA-1:cds;Parent=Msa0793570-mRNA-1 |
chr5_3 | CDS | 5533549 | 5533626 | 5533549 | ID=Msa0793570-mRNA-1:cds;Parent=Msa0793570-mRNA-1 |
chr5_3 | CDS | 5533157 | 5533310 | 5533157 | ID=Msa0793570-mRNA-1:cds;Parent=Msa0793570-mRNA-1 |
chr5_3 | CDS | 5532885 | 5533058 | 5532885 | ID=Msa0793570-mRNA-1:cds;Parent=Msa0793570-mRNA-1 |
chr5_3 | CDS | 5532510 | 5532575 | 5532510 | ID=Msa0793570-mRNA-1:cds;Parent=Msa0793570-mRNA-1 |
chr5_3 | CDS | 5532318 | 5532428 | 5532318 | ID=Msa0793570-mRNA-1:cds;Parent=Msa0793570-mRNA-1 |
Gene Sequence |
Protein sequence |