Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440400 | A0A396HTM3 | 66.383 | 705 | 120 | 10 | 1 | 590 | 32 | 734 | 0.0 | 871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048950 | Msa1440400 | 0.814120 | 1.810755e-51 | -8.615850e-47 |
| Msa0059880 | Msa1440400 | 0.854259 | 1.386632e-61 | -8.615850e-47 |
| Msa1359620 | Msa1440400 | -0.800958 | 1.128985e-48 | -8.615850e-47 |
| Msa1373560 | Msa1440400 | 0.807994 | 3.850274e-50 | -8.615850e-47 |
| Msa1403700 | Msa1440400 | -0.800888 | 1.166839e-48 | -8.615850e-47 |
| Msa1440400 | Msa1459610 | 0.801248 | 9.845578e-49 | -8.615850e-47 |
| Msa0623980 | Msa1440400 | 0.814247 | 1.697600e-51 | -8.615850e-47 |
| Msa0646210 | Msa1440400 | 0.812474 | 4.163426e-51 | -8.615850e-47 |
| Msa0670360 | Msa1440400 | 0.812116 | 4.983500e-51 | -8.615850e-47 |
| Msa0671640 | Msa1440400 | 0.800789 | 1.221996e-48 | -8.615850e-47 |
| Msa0684720 | Msa1440400 | 0.815152 | 1.070063e-51 | -8.615850e-47 |
| Msa0719880 | Msa1440400 | 0.819321 | 1.234900e-52 | -8.615850e-47 |
| Msa0727480 | Msa1440400 | 0.809009 | 2.337946e-50 | -8.615850e-47 |
| Msa0802590 | Msa1440400 | 0.938325 | 8.114619e-99 | -8.615850e-47 |
| Msa0841130 | Msa1440400 | 0.941898 | 1.862828e-101 | -8.615850e-47 |
| Msa0841170 | Msa1440400 | 0.925144 | 2.729680e-90 | -8.615850e-47 |
| Msa0143680 | Msa1440400 | 0.912907 | 1.135943e-83 | -8.615850e-47 |
| Msa0143710 | Msa1440400 | 0.930071 | 2.791055e-93 | -8.615850e-47 |
| Msa0143740 | Msa1440400 | 0.948269 | 1.317653e-106 | -8.615850e-47 |
| Msa0143770 | Msa1440400 | 0.946857 | 2.070073e-105 | -8.615850e-47 |
| Msa0150910 | Msa1440400 | 0.816309 | 5.909132e-52 | -8.615850e-47 |
| Msa0190670 | Msa1440400 | 0.810042 | 1.403458e-50 | -8.615850e-47 |
| Msa1296870 | Msa1440400 | 0.812569 | 3.968224e-51 | -8.615850e-47 |
| Msa1300610 | Msa1440400 | 0.808660 | 2.777329e-50 | -8.615850e-47 |
| Msa1323030 | Msa1440400 | 0.802033 | 6.796211e-49 | -8.615850e-47 |
| Msa0985700 | Msa1440400 | 0.827043 | 1.945262e-54 | -8.615850e-47 |
| Msa1020540 | Msa1440400 | 0.837617 | 4.676359e-57 | -8.615850e-47 |
| Msa1021620 | Msa1440400 | 0.824350 | 8.466914e-54 | -8.615850e-47 |
| Msa1024350 | Msa1440400 | 0.812662 | 3.787954e-51 | -8.615850e-47 |
| Msa1061670 | Msa1440400 | 0.803554 | 3.298581e-49 | -8.615850e-47 |
| Msa1087380 | Msa1440400 | 0.814065 | 1.862363e-51 | -8.615850e-47 |
| Msa0298270 | Msa1440400 | 0.802322 | 5.926032e-49 | -8.615850e-47 |
| Msa1109880 | Msa1440400 | 0.804204 | 2.416166e-49 | -8.615850e-47 |
| Msa1109890 | Msa1440400 | 0.841319 | 5.107707e-58 | -8.615850e-47 |
| Msa1149020 | Msa1440400 | 0.818987 | 1.471317e-52 | -8.615850e-47 |
| Msa1214960 | Msa1440400 | 0.805547 | 1.266652e-49 | -8.615850e-47 |
| Msa1216600 | Msa1440400 | 0.800189 | 1.619786e-48 | -8.615850e-47 |
| Msa0591490 | Msa1440400 | 0.807601 | 4.667728e-50 | -8.615850e-47 |
| Msa0883640 | Msa1440400 | 0.825834 | 3.776303e-54 | -8.615850e-47 |
| Msa0902340 | Msa1440400 | 0.811841 | 5.722101e-51 | -8.615850e-47 |
| Msa0910830 | Msa1440400 | 0.848000 | 8.096365e-60 | -8.615850e-47 |
| Msa0960090 | Msa1440400 | 0.829265 | 5.671778e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440400 | MtrunA17_Chr5g0410171 | 66.383 | 705 | 120 | 10 | 1 | 590 | 32 | 734 | 0.0 | 871 |
| Msa1440400 | MtrunA17_Chr5g0410341 | 88.358 | 335 | 6 | 2 | 288 | 589 | 411 | 745 | 0.0 | 585 |
| Msa1440400 | MtrunA17_Chr5g0410341 | 87.859 | 313 | 14 | 4 | 1 | 289 | 30 | 342 | 0.0 | 555 |
| Msa1440400 | MtrunA17_Chr5g0410201 | 77.744 | 328 | 40 | 2 | 296 | 590 | 1 | 328 | 1.25e-178 | 508 |
| Msa1440400 | MtrunA17_Chr5g0410271 | 77.538 | 325 | 40 | 2 | 298 | 589 | 2 | 326 | 3.09e-175 | 499 |
| Msa1440400 | MtrunA17_Chr6g0457101 | 41.333 | 675 | 291 | 16 | 1 | 588 | 30 | 686 | 7.67e-149 | 446 |
| Msa1440400 | MtrunA17_Chr5g0410461 | 52.660 | 376 | 135 | 7 | 260 | 594 | 96 | 469 | 6.48e-113 | 346 |
| Msa1440400 | MtrunA17_Chr6g0456141 | 52.035 | 344 | 124 | 6 | 288 | 597 | 51 | 387 | 2.79e-111 | 338 |
| Msa1440400 | MtrunA17_Chr6g0456101 | 36.262 | 717 | 311 | 24 | 1 | 583 | 30 | 734 | 1.35e-108 | 343 |
| Msa1440400 | MtrunA17_Chr5g0410371 | 59.122 | 296 | 82 | 4 | 329 | 587 | 1 | 294 | 1.72e-102 | 313 |
| Msa1440400 | MtrunA17_Chr5g0410191 | 80.745 | 161 | 31 | 0 | 429 | 589 | 32 | 192 | 6.04e-83 | 258 |
| Msa1440400 | MtrunA17_Chr5g0410581 | 31.410 | 780 | 327 | 25 | 1 | 590 | 31 | 792 | 7.83e-82 | 273 |
| Msa1440400 | MtrunA17_Chr5g0410291 | 67.358 | 193 | 40 | 5 | 110 | 283 | 1 | 189 | 4.38e-77 | 243 |
| Msa1440400 | MtrunA17_Chr5g0410211 | 63.918 | 194 | 50 | 4 | 110 | 283 | 1 | 194 | 6.62e-71 | 227 |
| Msa1440400 | MtrunA17_Chr5g0410181 | 78.947 | 133 | 28 | 0 | 457 | 589 | 1 | 133 | 3.20e-67 | 215 |
| Msa1440400 | MtrunA17_Chr2g0297701 | 31.148 | 549 | 302 | 17 | 90 | 586 | 44 | 568 | 7.11e-61 | 212 |
| Msa1440400 | MtrunA17_Chr5g0443001 | 31.336 | 584 | 301 | 21 | 91 | 587 | 31 | 601 | 2.86e-57 | 203 |
| Msa1440400 | MtrunA17_Chr2g0297691 | 27.039 | 699 | 392 | 24 | 4 | 609 | 36 | 709 | 3.72e-52 | 191 |
| Msa1440400 | MtrunA17_Chr2g0297681 | 26.984 | 693 | 398 | 21 | 4 | 609 | 36 | 707 | 1.28e-49 | 183 |
| Msa1440400 | MtrunA17_Chr2g0297651 | 26.627 | 676 | 387 | 21 | 4 | 590 | 38 | 693 | 2.49e-49 | 182 |
| Msa1440400 | MtrunA17_Chr3g0100741 | 26.381 | 561 | 318 | 12 | 91 | 570 | 33 | 579 | 6.40e-47 | 174 |
| Msa1440400 | MtrunA17_Chr5g0410451 | 49.123 | 171 | 82 | 1 | 429 | 594 | 71 | 241 | 1.51e-46 | 164 |
| Msa1440400 | MtrunA17_Chr2g0297491 | 34.591 | 318 | 161 | 7 | 329 | 609 | 88 | 395 | 5.31e-46 | 167 |
| Msa1440400 | MtrunA17_Chr5g0410541 | 52.121 | 165 | 73 | 2 | 429 | 588 | 53 | 216 | 1.67e-43 | 155 |
| Msa1440400 | MtrunA17_Chr6g0456151 | 42.023 | 257 | 118 | 9 | 1 | 236 | 30 | 276 | 1.22e-42 | 155 |
| Msa1440400 | MtrunA17_Chr5g0410471 | 45.909 | 220 | 105 | 5 | 5 | 221 | 105 | 313 | 8.68e-41 | 150 |
| Msa1440400 | MtrunA17_Chr2g0297481 | 32.588 | 313 | 170 | 7 | 329 | 609 | 186 | 489 | 1.98e-40 | 154 |
| Msa1440400 | MtrunA17_Chr3g0100301 | 41.327 | 196 | 78 | 2 | 418 | 583 | 209 | 397 | 6.11e-39 | 148 |
| Msa1440400 | MtrunA17_Chr3g0096941 | 24.740 | 578 | 333 | 15 | 91 | 581 | 33 | 595 | 1.40e-38 | 150 |
| Msa1440400 | MtrunA17_Chr2g0297711 | 26.542 | 535 | 301 | 17 | 90 | 587 | 47 | 526 | 8.02e-38 | 147 |
| Msa1440400 | MtrunA17_Chr5g0410411 | 39.464 | 261 | 107 | 9 | 1 | 221 | 30 | 279 | 2.44e-36 | 139 |
| Msa1440400 | MtrunA17_Chr5g0410381 | 39.837 | 246 | 101 | 8 | 82 | 286 | 3 | 242 | 4.33e-36 | 135 |
| Msa1440400 | MtrunA17_Chr5g0410251 | 65.060 | 83 | 29 | 0 | 1 | 83 | 28 | 110 | 3.12e-32 | 120 |
| Msa1440400 | MtrunA17_Chr2g0286601 | 32.765 | 293 | 153 | 6 | 311 | 569 | 371 | 653 | 7.09e-30 | 125 |
| Msa1440400 | MtrunA17_Chr5g0410511 | 39.881 | 168 | 96 | 1 | 429 | 591 | 32 | 199 | 1.20e-29 | 116 |
| Msa1440400 | MtrunA17_Chr5g0410501 | 45.139 | 144 | 73 | 3 | 289 | 428 | 147 | 288 | 1.50e-29 | 119 |
| Msa1440400 | MtrunA17_Chr3g0098481 | 28.931 | 318 | 172 | 8 | 316 | 587 | 22 | 331 | 3.11e-28 | 116 |
| Msa1440400 | MtrunA17_Chr3g0102001 | 29.276 | 304 | 165 | 6 | 328 | 588 | 440 | 736 | 2.76e-26 | 114 |
| Msa1440400 | MtrunA17_Chr2g0286551 | 24.664 | 596 | 319 | 16 | 94 | 583 | 83 | 654 | 1.28e-24 | 108 |
| Msa1440400 | MtrunA17_Chr2g0286561 | 38.849 | 139 | 78 | 1 | 431 | 569 | 47 | 178 | 2.55e-24 | 101 |
| Msa1440400 | MtrunA17_Chr5g0410551 | 50.476 | 105 | 46 | 3 | 329 | 429 | 1 | 103 | 2.84e-23 | 95.5 |
| Msa1440400 | MtrunA17_Chr1g0211541 | 25.541 | 462 | 250 | 18 | 101 | 508 | 6 | 427 | 2.17e-22 | 101 |
| Msa1440400 | MtrunA17_Chr3g0098301 | 26.861 | 309 | 182 | 8 | 316 | 583 | 88 | 393 | 3.75e-22 | 99.4 |
| Msa1440400 | MtrunA17_Chr5g0410561 | 37.321 | 209 | 120 | 7 | 32 | 236 | 2 | 203 | 7.78e-22 | 94.4 |
| Msa1440400 | MtrunA17_Chr5g0439081 | 36.076 | 158 | 94 | 3 | 428 | 580 | 41 | 196 | 3.75e-21 | 92.4 |
| Msa1440400 | MtrunA17_Chr2g0284541 | 28.391 | 317 | 184 | 7 | 300 | 581 | 322 | 630 | 1.31e-19 | 93.2 |
| Msa1440400 | MtrunA17_Chr3g0098531 | 27.234 | 235 | 136 | 4 | 385 | 585 | 48 | 281 | 3.81e-19 | 88.6 |
| Msa1440400 | MtrunA17_Chr5g0439061 | 27.740 | 292 | 172 | 5 | 329 | 583 | 437 | 726 | 8.73e-19 | 90.5 |
| Msa1440400 | MtrunA17_Chr2g0284501 | 28.041 | 296 | 168 | 7 | 322 | 581 | 362 | 648 | 1.20e-18 | 90.1 |
| Msa1440400 | MtrunA17_Chr5g0410441 | 48.889 | 90 | 40 | 3 | 344 | 429 | 1 | 88 | 2.58e-18 | 80.9 |
| Msa1440400 | MtrunA17_Chr3g0100921 | 40.650 | 123 | 72 | 1 | 448 | 569 | 2 | 124 | 8.18e-18 | 80.5 |
| Msa1440400 | MtrunA17_Chr5g0439051 | 34.591 | 159 | 102 | 2 | 429 | 586 | 50 | 207 | 1.09e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440400 | AT3G18670.1 | 35.751 | 579 | 281 | 19 | 70 | 587 | 35 | 583 | 4.60e-98 | 311 |
| Msa1440400 | AT3G18670.2 | 33.654 | 624 | 288 | 19 | 70 | 587 | 35 | 638 | 2.00e-95 | 306 |
| Msa1440400 | AT5G04690.3 | 30.756 | 582 | 312 | 14 | 81 | 587 | 66 | 631 | 2.69e-66 | 229 |
| Msa1440400 | AT5G04690.1 | 31.616 | 563 | 312 | 16 | 81 | 587 | 66 | 611 | 1.08e-64 | 224 |
| Msa1440400 | AT5G04690.2 | 30.201 | 596 | 311 | 15 | 81 | 587 | 66 | 645 | 5.92e-64 | 223 |
| Msa1440400 | AT5G04700.1 | 29.711 | 589 | 310 | 15 | 90 | 587 | 80 | 655 | 4.99e-61 | 215 |
| Msa1440400 | AT5G04680.3 | 28.767 | 584 | 316 | 17 | 90 | 587 | 67 | 636 | 1.09e-53 | 194 |
| Msa1440400 | AT5G04680.4 | 28.523 | 596 | 316 | 17 | 90 | 587 | 67 | 650 | 5.24e-52 | 190 |
| Msa1440400 | AT5G04730.1 | 29.795 | 537 | 284 | 16 | 138 | 587 | 58 | 588 | 4.34e-50 | 183 |
| Msa1440400 | AT5G04680.2 | 28.571 | 532 | 274 | 14 | 151 | 587 | 7 | 527 | 2.09e-48 | 177 |
| Msa1440400 | AT5G04680.1 | 27.564 | 624 | 315 | 22 | 90 | 587 | 67 | 679 | 5.59e-47 | 176 |
| Msa1440400 | AT5G35810.1 | 33.887 | 301 | 157 | 6 | 329 | 589 | 35 | 333 | 9.76e-47 | 168 |
| Msa1440400 | AT3G54065.1 | 39.535 | 172 | 68 | 2 | 415 | 550 | 8 | 179 | 1.30e-32 | 125 |
| Msa1440400 | AT5G04700.2 | 25.815 | 399 | 224 | 12 | 90 | 429 | 80 | 465 | 6.68e-24 | 105 |
| Msa1440400 | AT3G54070.1 | 28.324 | 173 | 111 | 6 | 66 | 232 | 24 | 189 | 6.46e-12 | 66.6 |
| Msa1440400 | AT5G35830.1 | 30.000 | 160 | 101 | 4 | 78 | 232 | 73 | 226 | 6.65e-12 | 67.0 |
Find 143 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCACTTGGCAGGATATTT+AGG | 0.127030 | tig0029080:-28003 | Msa1440400:CDS |
| CCAAAGAATTCAAGAGTTTA+AGG | 0.157617 | tig0029080:-28280 | Msa1440400:CDS |
| TTCACTTGCTATGCTCTTAA+AGG | 0.220345 | tig0029080:-26995 | Msa1440400:CDS |
| CCTTAAACTCTTGAATTCTT+TGG | 0.238324 | tig0029080:+28280 | None:intergenic |
| TAAAGAAGCCTGGAATAAAT+TGG | 0.241875 | tig0029080:-31388 | Msa1440400:CDS |
| ATACATGATGCAACTGTAAA+TGG | 0.242921 | tig0029080:-28075 | Msa1440400:CDS |
| TTAGAACGCGCACCAATTTC+AGG | 0.251761 | tig0029080:+31516 | None:intergenic |
| TACATACCTTGCTCAATATC+TGG | 0.253912 | tig0029080:+31333 | None:intergenic |
| CTTCGCTATATTCGTGTTTC+CGG | 0.254247 | tig0029080:+30222 | None:intergenic |
| AATATATTCCACATCCTCTA+TGG | 0.260429 | tig0029080:-30383 | Msa1440400:CDS |
| GTGACCTCTATTCCTGAAAT+TGG | 0.292763 | tig0029080:-31528 | Msa1440400:CDS |
| TGCACTTGGCAGGATATTTA+GGG | 0.308043 | tig0029080:-28002 | Msa1440400:CDS |
| TTTCCAAGTGGTAGTGGATA+TGG | 0.311953 | tig0029080:-29789 | Msa1440400:CDS |
| ACTTCGGTCCTTCTCTTCAT+TGG | 0.319322 | tig0029080:-27135 | Msa1440400:CDS |
| AATTGTATCCATCAGGAATA+AGG | 0.321064 | tig0029080:-28362 | Msa1440400:intron |
| CTTCACGTTGCGGTAGTTGC+TGG | 0.322177 | tig0029080:-30349 | Msa1440400:CDS |
| CTAAGACTGAATATGAGATT+TGG | 0.338368 | tig0029080:-31497 | Msa1440400:CDS |
| AGGGTAATCCTGACCTCTTA+TGG | 0.352153 | tig0029080:-28170 | Msa1440400:CDS |
| CGAGGAAATTGTGAAGAAAT+TGG | 0.372095 | tig0029080:-30323 | Msa1440400:CDS |
| ATGCAAACTCGTTTATTAAG+AGG | 0.378242 | tig0029080:-30417 | Msa1440400:CDS |
| AACAGGGATTTCACCATCAT+TGG | 0.379563 | tig0029080:+30141 | None:intergenic |
| TGGTGAAAGCTGGGGAGAAA+TGG | 0.379583 | tig0029080:-27338 | Msa1440400:CDS |
| TGTTCTTCTTGCTGCTGCTA+AGG | 0.379583 | tig0029080:-30122 | Msa1440400:CDS |
| GATAAGTAATAAGTTTCAAT+TGG | 0.388393 | tig0029080:+26859 | None:intergenic |
| AGTTGCACCCAATTTATTCC+AGG | 0.399506 | tig0029080:+31380 | None:intergenic |
| CACAAGGAGCTGGTGAAAGC+TGG | 0.403742 | tig0029080:-27348 | Msa1440400:intron |
| GCTGCAGCTTTCACTGTCCC+TGG | 0.408383 | tig0029080:-27255 | Msa1440400:CDS |
| TTAGCAGCAGCAAGAAGAAC+AGG | 0.410668 | tig0029080:+30124 | None:intergenic |
| TAGAAACCACAGAGAAGAAA+AGG | 0.416389 | tig0029080:+27037 | None:intergenic |
| TTCCAAGTGGTAGTGGATAT+GGG | 0.416844 | tig0029080:-29788 | Msa1440400:CDS |
| AAATGCCGTGTAGACGCATT+TGG | 0.419337 | tig0029080:-28036 | Msa1440400:CDS |
| AATTCCATGTTGCACTTGGC+AGG | 0.419647 | tig0029080:-28012 | Msa1440400:CDS |
| ATCAGAACTTAGAGAGGCTT+CGG | 0.421195 | tig0029080:-28256 | Msa1440400:CDS |
| GGGTAATCCTGACCTCTTAT+GGG | 0.423361 | tig0029080:-28169 | Msa1440400:CDS |
| CTAATATGAGTAAGATTCTC+TGG | 0.424630 | tig0029080:+31426 | None:intergenic |
| TCACTTGCTATGCTCTTAAA+GGG | 0.427681 | tig0029080:-26994 | Msa1440400:CDS |
| CATTGGTCTTCATAGATAAC+AGG | 0.427879 | tig0029080:+30158 | None:intergenic |
| ACCTTAGTGGCAATGACTTA+AGG | 0.429666 | tig0029080:+27079 | None:intergenic |
| AGATGCAAAGAGAAATTCTA+TGG | 0.430747 | tig0029080:-27939 | Msa1440400:CDS |
| TTCACGTTGCGGTAGTTGCT+GGG | 0.432176 | tig0029080:-30348 | Msa1440400:CDS |
| TCTCTTTGCATCTGCATAGC+AGG | 0.438079 | tig0029080:+27949 | None:intergenic |
| GAGATTTGGAACAGGAAGAA+TGG | 0.441267 | tig0029080:-31483 | Msa1440400:CDS |
| CCACAAATCACACTTTGAAT+CGG | 0.443086 | tig0029080:-29856 | Msa1440400:CDS |
| TCTGTGTTTCCAAGTGGTAG+TGG | 0.443413 | tig0029080:-29795 | Msa1440400:CDS |
| CTGAATATGAGATTTGGAAC+AGG | 0.444534 | tig0029080:-31491 | Msa1440400:CDS |
| GTTCTTCTTGCTGCTGCTAA+GGG | 0.445513 | tig0029080:-30121 | Msa1440400:CDS |
| GACGGAACTAGAACGATAAC+AGG | 0.453839 | tig0029080:+26928 | None:intergenic |
| CGATTCAAAGTGTGATTTGT+GGG | 0.456154 | tig0029080:+29857 | None:intergenic |
| TATAGCGAAGTGTATGACTA+TGG | 0.458675 | tig0029080:-30209 | Msa1440400:CDS |
| TCCTTAAGTCATTGCCACTA+AGG | 0.460081 | tig0029080:-27080 | Msa1440400:CDS |
| TCTTGTGGGACATGGTCTGT+GGG | 0.464135 | tig0029080:-31556 | Msa1440400:CDS |
| TCAATGGCCCATAAGAGGTC+AGG | 0.465739 | tig0029080:+28162 | None:intergenic |
| TTTCAGCGTAACGAGCCGTT+AGG | 0.467061 | tig0029080:+27109 | None:intergenic |
| GTTTATAGATGCAATGAGAA+AGG | 0.467103 | tig0029080:-28190 | Msa1440400:CDS |
| TTGTGGGCAAGAGGCATTTG+AGG | 0.467341 | tig0029080:+29873 | None:intergenic |
| CTTGTTAGAAACTATCTTGT+GGG | 0.467922 | tig0029080:-31570 | None:intergenic |
| ATGCGTGCCAATGCGTATAA+TGG | 0.471182 | tig0029080:+29822 | None:intergenic |
| TGTGCAGCGATTTATATTGA+AGG | 0.474499 | tig0029080:+30467 | None:intergenic |
| TTCATATTGCTAAAGAAGCC+TGG | 0.477292 | tig0029080:-31398 | Msa1440400:CDS |
| AAAGAAGCCTGGAATAAATT+GGG | 0.481257 | tig0029080:-31387 | Msa1440400:CDS |
| ACAAGGAGCTGGTGAAAGCT+GGG | 0.481894 | tig0029080:-27347 | Msa1440400:intron |
| GGTGAAAGCTGGGGAGAAAT+GGG | 0.482292 | tig0029080:-27337 | Msa1440400:CDS |
| AGCTGGTTCATTTACTCTTG+TGG | 0.482801 | tig0029080:-27304 | Msa1440400:CDS |
| AGATTTGGAACAGGAAGAAT+GGG | 0.485550 | tig0029080:-31482 | Msa1440400:CDS |
| TCAGCTCAGCAACAAGAGCT+AGG | 0.486371 | tig0029080:+30245 | None:intergenic |
| CATAGCAAGTGAAGCACAGA+AGG | 0.486804 | tig0029080:+27005 | None:intergenic |
| ATCTTGTGGGACATGGTCTG+TGG | 0.486835 | tig0029080:-31557 | Msa1440400:CDS |
| GTGAAGAAATTGGTGAAGGA+AGG | 0.488215 | tig0029080:-30313 | Msa1440400:CDS |
| TTGCATCTGCATAGCAGGAC+CGG | 0.495069 | tig0029080:+27954 | None:intergenic |
| ATATATTCCACATCCTCTAT+GGG | 0.496055 | tig0029080:-30382 | Msa1440400:CDS |
| TTGTCTTGATTGTTTCCACC+AGG | 0.496117 | tig0029080:+27237 | None:intergenic |
| TTGTACACCGTTGGAAGACC+TGG | 0.502955 | tig0029080:-30068 | Msa1440400:CDS |
| TTTATAGATGCAATGAGAAA+GGG | 0.503030 | tig0029080:-28189 | Msa1440400:CDS |
| ATCATGTATGAGTTCGAAAA+CGG | 0.503307 | tig0029080:+28089 | None:intergenic |
| TGCGATAATTATCATCGGCC+AGG | 0.509460 | tig0029080:+30050 | None:intergenic |
| TGGCAATTCCATGTTGCACT+TGG | 0.511014 | tig0029080:-28016 | Msa1440400:CDS |
| TCTTTACCGTTGTACACCGT+TGG | 0.515694 | tig0029080:-30077 | Msa1440400:CDS |
| TCTGATCTTGATCGTAGATC+CGG | 0.515841 | tig0029080:-27973 | Msa1440400:CDS |
| CGCACCAATTTCAGGAATAG+AGG | 0.521001 | tig0029080:+31524 | None:intergenic |
| GCTCTTGTTGCTGAGCTGAC+CGG | 0.526277 | tig0029080:-30241 | Msa1440400:CDS |
| CCGATTCAAAGTGTGATTTG+TGG | 0.526820 | tig0029080:+29856 | None:intergenic |
| TGCAAACTCGTTTATTAAGA+GGG | 0.527286 | tig0029080:-30416 | Msa1440400:CDS |
| TGTGATGTCGTGCAAGAACA+AGG | 0.535047 | tig0029080:+27206 | None:intergenic |
| GAGGCATTTGAGGAAATCGT+TGG | 0.537554 | tig0029080:+29883 | None:intergenic |
| GGTCCTCCCCATAGAGGATG+TGG | 0.539677 | tig0029080:+30375 | None:intergenic |
| AAGAGAAATTCTATGGTTCA+AGG | 0.541072 | tig0029080:-27932 | Msa1440400:intron |
| TGTGCAACCATTATACGCAT+TGG | 0.543058 | tig0029080:-29829 | Msa1440400:CDS |
| AGTGCGAAAAGTAACCTTAG+TGG | 0.548121 | tig0029080:+27066 | None:intergenic |
| ATGTTGCAAGCAGCAAAGCA+TGG | 0.548691 | tig0029080:-28222 | Msa1440400:CDS |
| AACCCATATCCACTACCACT+TGG | 0.557493 | tig0029080:+29786 | None:intergenic |
| AAGTGTGATTTGTGGGCAAG+AGG | 0.558162 | tig0029080:+29864 | None:intergenic |
| TCTTGTTAGAAACTATCTTG+TGG | 0.559427 | tig0029080:-31571 | None:intergenic |
| AGAAACTATCTTGTGGGACA+TGG | 0.562860 | tig0029080:-31564 | Msa1440400:CDS |
| AGAAACCACAGAGAAGAAAA+GGG | 0.563826 | tig0029080:+27038 | None:intergenic |
| TGTTGCAAGCAGCAAAGCAT+GGG | 0.564523 | tig0029080:-28221 | Msa1440400:CDS |
| GCTTTAATTTGCAGGTGTGG+TGG | 0.564757 | tig0029080:-30500 | Msa1440400:intron |
| ACTTGAAAATCTCAAGGAAG+AGG | 0.567742 | tig0029080:+26896 | None:intergenic |
| TAAGGAATCAGAACTTAGAG+AGG | 0.568613 | tig0029080:-28262 | Msa1440400:CDS |
| GCCGATGATAATTATCGCAA+TGG | 0.574637 | tig0029080:-30046 | Msa1440400:intron |
| TGAAGAAATTGGTGAAGGAA+GGG | 0.574748 | tig0029080:-30312 | Msa1440400:CDS |
| CAGCTCAGCAACAAGAGCTA+GGG | 0.580236 | tig0029080:+30246 | None:intergenic |
| AAATGGGCAAAAGATACAGC+TGG | 0.580445 | tig0029080:-27321 | Msa1440400:CDS |
| TTATCTATGAAGACCAATGA+TGG | 0.582929 | tig0029080:-30154 | Msa1440400:CDS |
| ACCTTGCTCAATATCTGGAT+CGG | 0.583770 | tig0029080:+31338 | None:intergenic |
| TAAGAAAATATCACGGTCAG+AGG | 0.584733 | tig0029080:-30182 | Msa1440400:CDS |
| TGCGGTAGTTGCTGGGCACG+AGG | 0.589759 | tig0029080:-30341 | Msa1440400:CDS |
| TCTCTTCATTGGAATCCTAA+CGG | 0.591072 | tig0029080:-27124 | Msa1440400:CDS |
| CTGTAGACTTGAAAATCTCA+AGG | 0.594097 | tig0029080:+26890 | None:intergenic |
| GCAGCTTTCACTGTCCCTGG+TGG | 0.601445 | tig0029080:-27252 | Msa1440400:CDS |
| AGGAAGAGGCGCAATTGTGA+CGG | 0.607133 | tig0029080:+26910 | None:intergenic |
| AGTATATTGAGAGCGGTGAG+TGG | 0.609550 | tig0029080:-30444 | Msa1440400:CDS |
| ACCATTGCGATAATTATCAT+CGG | 0.609954 | tig0029080:+30045 | None:intergenic |
| TAGAACGATAACAGGAACAC+TGG | 0.611619 | tig0029080:+26936 | None:intergenic |
| AACTACCGCAACGTGAAGAA+CGG | 0.612033 | tig0029080:+30354 | None:intergenic |
| AATTGCCAAATGCGTCTACA+CGG | 0.612652 | tig0029080:+28031 | None:intergenic |
| ATGATGCAACTGTAAATGGA+CGG | 0.613845 | tig0029080:-28071 | Msa1440400:CDS |
| TTAGGATTCCAATGAAGAGA+AGG | 0.614556 | tig0029080:+27127 | None:intergenic |
| ATGCCTTCTGTGTTTCCAAG+TGG | 0.615562 | tig0029080:-29801 | Msa1440400:CDS |
| CTTGTGGGACATGGTCTGTG+GGG | 0.619674 | tig0029080:-31555 | Msa1440400:CDS |
| CTACCACTTGGAAACACAGA+AGG | 0.622603 | tig0029080:+29798 | None:intergenic |
| AAGAACGGTCCTCCCCATAG+AGG | 0.622685 | tig0029080:+30369 | None:intergenic |
| GCCGATCCAGATATTGAGCA+AGG | 0.624425 | tig0029080:-31339 | Msa1440400:intron |
| AATTGTGAAGAAATTGGTGA+AGG | 0.625256 | tig0029080:-30317 | Msa1440400:CDS |
| ATATCCTGCCAAGTGCAACA+TGG | 0.627952 | tig0029080:+28008 | None:intergenic |
| GGTGGAAACAATCAAGACAA+TGG | 0.629811 | tig0029080:-27234 | Msa1440400:CDS |
| CATATCATTCAACTAACATG+TGG | 0.643061 | tig0029080:-31450 | Msa1440400:CDS |
| CAAGGAGCTGGTGAAAGCTG+GGG | 0.651622 | tig0029080:-27346 | Msa1440400:intron |
| TGTCTTGATTGTTTCCACCA+GGG | 0.652150 | tig0029080:+27238 | None:intergenic |
| GAGGACCGTTCTTCACGTTG+CGG | 0.655029 | tig0029080:-30359 | Msa1440400:CDS |
| GTGATGTCGTGCAAGAACAA+GGG | 0.659099 | tig0029080:+27207 | None:intergenic |
| ATTCCACATCCTCTATGGGG+AGG | 0.660094 | tig0029080:-30378 | Msa1440400:CDS |
| TAGCAGCAGCAAGAAGAACA+GGG | 0.665135 | tig0029080:+30125 | None:intergenic |
| TTGGAACAGGAAGAATGGGA+AGG | 0.668429 | tig0029080:-31478 | Msa1440400:CDS |
| TATTTCAAGAGCTACACGGT+AGG | 0.669157 | tig0029080:+28317 | None:intergenic |
| GTGAAAATGAAAGACAATCG+AGG | 0.669964 | tig0029080:-30277 | Msa1440400:intron |
| TCATCGGCCAGGTCTTCCAA+CGG | 0.671668 | tig0029080:+30061 | None:intergenic |
| TGGTATATAAGAAAATATCA+CGG | 0.677081 | tig0029080:-30189 | Msa1440400:CDS |
| CTACGATCAAGATCAGAGGA+AGG | 0.678354 | tig0029080:+27979 | None:intergenic |
| CTGCACAAGTATATTGAGAG+CGG | 0.680709 | tig0029080:-30451 | Msa1440400:CDS |
| GGATCTACGATCAAGATCAG+AGG | 0.680818 | tig0029080:+27975 | None:intergenic |
| TCAATATTTCAAGAGCTACA+CGG | 0.684421 | tig0029080:+28313 | None:intergenic |
| GGTCTTCCAACGGTGTACAA+CGG | 0.687225 | tig0029080:+30071 | None:intergenic |
| TATATTCCACATCCTCTATG+GGG | 0.688060 | tig0029080:-30381 | Msa1440400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAAATACTTATAATATT+AGG | - | tig0029080:27797-27816 | Msa1440400:intron | 10.0% |
| !! | CTTAAATACTTATAATATTA+GGG | - | tig0029080:27798-27817 | Msa1440400:intron | 10.0% |
| !! | ACTTTATAAAAGAAATTTAA+AGG | - | tig0029080:28849-28868 | Msa1440400:intron | 10.0% |
| !! | TTATTAAACAGTAAAAGTTT+AGG | - | tig0029080:27641-27660 | Msa1440400:intron | 15.0% |
| !!! | ATTCAAATGTACTTATTTTT+GGG | + | tig0029080:27734-27753 | None:intergenic | 15.0% |
| !!! | TATTCAAATGTACTTATTTT+TGG | + | tig0029080:27735-27754 | None:intergenic | 15.0% |
| !! | ATTTAAAGGTGATTTATAAA+AGG | - | tig0029080:28863-28882 | Msa1440400:intron | 15.0% |
| !! | TTTAAAGGTGATTTATAAAA+GGG | - | tig0029080:28864-28883 | Msa1440400:intron | 15.0% |
| !!! | CAAAAGTTTGTATTTTATAA+AGG | + | tig0029080:28906-28925 | None:intergenic | 15.0% |
| !! | TACTTCCAATAATATATTAA+AGG | - | tig0029080:28982-29001 | Msa1440400:intron | 15.0% |
| !! | AAACTCCTTTAATATATTAT+TGG | + | tig0029080:28990-29009 | None:intergenic | 15.0% |
| !! | TAATTAATTAATCACAAAGA+GGG | + | tig0029080:29982-30001 | None:intergenic | 15.0% |
| !! | TTAATTAATTAATCACAAAG+AGG | + | tig0029080:29983-30002 | None:intergenic | 15.0% |
| !!! | AAAAACTAAATTTGAAATTC+TGG | - | tig0029080:30740-30759 | Msa1440400:intron | 15.0% |
| !! | TACACATTAATCTATTCTTT+GGG | - | tig0029080:27085-27104 | Msa1440400:CDS | 20.0% |
| !! | AACTATGTCTAATATGTATA+GGG | + | tig0029080:27127-27146 | None:intergenic | 20.0% |
| !! | AAACTATGTCTAATATGTAT+AGG | + | tig0029080:27128-27147 | None:intergenic | 20.0% |
| !!! | AATTCATATGTTTGATTTCA+TGG | - | tig0029080:27314-27333 | Msa1440400:CDS | 20.0% |
| !!! | ATTCATATGTTTGATTTCAT+GGG | - | tig0029080:27315-27334 | Msa1440400:CDS | 20.0% |
| !!! | ACACTTTATTTATTATGAAG+TGG | + | tig0029080:27385-27404 | None:intergenic | 20.0% |
| !!! | TTTGAATATTGTGATTTTAG+TGG | - | tig0029080:27747-27766 | Msa1440400:intron | 20.0% |
| !!! | TTGAATATTGTGATTTTAGT+GGG | - | tig0029080:27748-27767 | Msa1440400:intron | 20.0% |
| !!! | CATTTATTTTCCTTACTAAT+TGG | + | tig0029080:27825-27844 | None:intergenic | 20.0% |
| !! | CAATTAGTAAGGAAAATAAA+TGG | - | tig0029080:27823-27842 | Msa1440400:intron | 20.0% |
| !! | TGGTATATAAGAAAATATCA+CGG | - | tig0029080:28194-28213 | Msa1440400:CDS | 20.0% |
| !!! | TTTTACGCATATTTTTTTTC+AGG | - | tig0029080:29814-29833 | Msa1440400:CDS | 20.0% |
| !!! | TTGTTAATCCTTGTTTAAAT+CGG | - | tig0029080:29904-29923 | Msa1440400:CDS | 20.0% |
| !! | AATTAATTAATCACAAAGAG+GGG | + | tig0029080:29981-30000 | None:intergenic | 20.0% |
| !!! | TCAAATTTAGTTTTTGAAGT+TGG | + | tig0029080:30735-30754 | None:intergenic | 20.0% |
| !! | ATACATGACATTTAAATAAG+TGG | - | tig0029080:30803-30822 | Msa1440400:intron | 20.0% |
| !! | ATGAATAAGATAATAATGTG+TGG | + | tig0029080:30861-30880 | None:intergenic | 20.0% |
| !! | GATAAGTAATAAGTTTCAAT+TGG | + | tig0029080:31527-31546 | None:intergenic | 20.0% |
| ! | GTACACATTAATCTATTCTT+TGG | - | tig0029080:27084-27103 | Msa1440400:CDS | 25.0% |
| ! | TAGTTTCTAAATGTAGTGAA+AGG | - | tig0029080:27142-27161 | Msa1440400:CDS | 25.0% |
| !! | CAATGAGGAAAGATTTTTAA+AGG | - | tig0029080:27536-27555 | Msa1440400:intron | 25.0% |
| ! | AGCTAATGTTTATTAGCAAT+AGG | - | tig0029080:27563-27582 | Msa1440400:intron | 25.0% |
| ! | ATGTTTATTAGCAATAGGTA+AGG | - | tig0029080:27568-27587 | Msa1440400:intron | 25.0% |
| ! | TGTTTATTAGCAATAGGTAA+GGG | - | tig0029080:27569-27588 | Msa1440400:intron | 25.0% |
| ! | TCGATTCAATATTGTATCTT+AGG | - | tig0029080:28459-28478 | Msa1440400:intron | 25.0% |
| ! | AATTTGAAAAGTAAGCGAAA+TGG | + | tig0029080:28680-28699 | None:intergenic | 25.0% |
| !!! | ATTTCGCTTACTTTTCAAAT+TGG | - | tig0029080:28679-28698 | Msa1440400:intron | 25.0% |
| !!! | TTTCGCTTACTTTTCAAATT+GGG | - | tig0029080:28680-28699 | Msa1440400:intron | 25.0% |
| ! | TGCAAACTTATAATGTTACA+CGG | - | tig0029080:28739-28758 | Msa1440400:intron | 25.0% |
| !! | TTGTATTTTATAAAGGACAC+TGG | + | tig0029080:28899-28918 | None:intergenic | 25.0% |
| ! | AATGAATACTATATGTGTAG+TGG | + | tig0029080:28952-28971 | None:intergenic | 25.0% |
| ! | GAGTAAATAATGAATGAGAT+TGG | - | tig0029080:29214-29233 | Msa1440400:intron | 25.0% |
| ! | ATGAACACACATATATAACA+GGG | + | tig0029080:29782-29801 | None:intergenic | 25.0% |
| ! | TATGAACACACATATATAAC+AGG | + | tig0029080:29783-29802 | None:intergenic | 25.0% |
| !!! | CTAATATACCGATTTAAACA+AGG | + | tig0029080:29915-29934 | None:intergenic | 25.0% |
| ! | GAATGATTGTACTTACAATA+AGG | + | tig0029080:29956-29975 | None:intergenic | 25.0% |
| !! | TATATTTTCCTTATTCCTGA+TGG | + | tig0029080:30032-30051 | None:intergenic | 25.0% |
| ! | TTTATAGATGCAATGAGAAA+GGG | - | tig0029080:30194-30213 | Msa1440400:CDS | 25.0% |
| ! | GCCATTGATAAAAATAAAAG+AGG | - | tig0029080:30236-30255 | Msa1440400:CDS | 25.0% |
| !!! | GCCTCTTTTATTTTTATCAA+TGG | + | tig0029080:30240-30259 | None:intergenic | 25.0% |
| ! | AATGTCATGTATCTCAAAAT+TGG | + | tig0029080:30795-30814 | None:intergenic | 25.0% |
| !! | CATATTGTGAAATTTTGTGA+AGG | - | tig0029080:30929-30948 | Msa1440400:intron | 25.0% |
| CTAAGACTGAATATGAGATT+TGG | - | tig0029080:26886-26905 | Msa1440400:CDS | 30.0% | |
| CATATCATTCAACTAACATG+TGG | - | tig0029080:26933-26952 | Msa1440400:CDS | 30.0% | |
| CTAATATGAGTAAGATTCTC+TGG | + | tig0029080:26960-26979 | None:intergenic | 30.0% | |
| TAAAGAAGCCTGGAATAAAT+TGG | - | tig0029080:26995-27014 | Msa1440400:CDS | 30.0% | |
| AAAGAAGCCTGGAATAAATT+GGG | - | tig0029080:26996-27015 | Msa1440400:CDS | 30.0% | |
| ATAAATAAAGTGTGTGAGTG+AGG | - | tig0029080:27392-27411 | Msa1440400:intron | 30.0% | |
| GTTGTATGAGATGTTACAAA+TGG | - | tig0029080:27471-27490 | Msa1440400:intron | 30.0% | |
| ! | TGAGATGTTACAAATGGTTT+TGG | - | tig0029080:27477-27496 | Msa1440400:intron | 30.0% |
| !! | TGAGGAAAGATTTTTAAAGG+AGG | - | tig0029080:27539-27558 | Msa1440400:intron | 30.0% |
| TAGTTACAACGCTTAAGATT+GGG | + | tig0029080:27669-27688 | None:intergenic | 30.0% | |
| TTAGTTACAACGCTTAAGAT+TGG | + | tig0029080:27670-27689 | None:intergenic | 30.0% | |
| TTGTAACTAAGAACAACCAA+CGG | - | tig0029080:27680-27699 | Msa1440400:intron | 30.0% | |
| ATATTAGGGTCCAATTAGTA+AGG | - | tig0029080:27812-27831 | Msa1440400:intron | 30.0% | |
| !! | ACATACATGCTTTAATTTGC+AGG | - | tig0029080:27875-27894 | Msa1440400:intron | 30.0% |
| ATGCAAACTCGTTTATTAAG+AGG | - | tig0029080:27966-27985 | Msa1440400:CDS | 30.0% | |
| TGCAAACTCGTTTATTAAGA+GGG | - | tig0029080:27967-27986 | Msa1440400:CDS | 30.0% | |
| AATATATTCCACATCCTCTA+TGG | - | tig0029080:28000-28019 | Msa1440400:CDS | 30.0% | |
| ATATATTCCACATCCTCTAT+GGG | - | tig0029080:28001-28020 | Msa1440400:CDS | 30.0% | |
| AATTGTGAAGAAATTGGTGA+AGG | - | tig0029080:28066-28085 | Msa1440400:CDS | 30.0% | |
| TTATCTATGAAGACCAATGA+TGG | - | tig0029080:28229-28248 | Msa1440400:CDS | 30.0% | |
| ACCATTGCGATAATTATCAT+CGG | + | tig0029080:28341-28360 | None:intergenic | 30.0% | |
| TGTATCACTGCAGAAATATT+TGG | - | tig0029080:28379-28398 | Msa1440400:intron | 30.0% | |
| ATCGACATCAAACACTAATA+TGG | + | tig0029080:28444-28463 | None:intergenic | 30.0% | |
| TCAATATTGTATCTTAGGTG+TGG | - | tig0029080:28464-28483 | Msa1440400:intron | 30.0% | |
| TTGGGTCATCTTAAAATTCT+CGG | - | tig0029080:28698-28717 | Msa1440400:intron | 30.0% | |
| GGAGATGTTAAATTAAGTGT+TGG | + | tig0029080:28931-28950 | None:intergenic | 30.0% | |
| ! | AGAGTTTTACATGATCTGTT+TGG | - | tig0029080:29023-29042 | Msa1440400:intron | 30.0% |
| TACATGATCTGTTTGGAAAT+TGG | - | tig0029080:29030-29049 | Msa1440400:intron | 30.0% | |
| ! | AGTGAAGTTTGATGAGTTTT+TGG | + | tig0029080:29103-29122 | None:intergenic | 30.0% |
| AGACCAACTTTACAAAATTG+AGG | - | tig0029080:29146-29165 | Msa1440400:intron | 30.0% | |
| ! | ACTCCTCAATTTTGTAAAGT+TGG | + | tig0029080:29152-29171 | None:intergenic | 30.0% |
| !! | GAGTATCGTTCCAATTTTAT+CGG | - | tig0029080:29168-29187 | Msa1440400:intron | 30.0% |
| GGTAATCTCAAAACTAAAAG+CGG | + | tig0029080:29323-29342 | None:intergenic | 30.0% | |
| !! | AGAGAAGTGCATGAATTTTA+CGG | - | tig0029080:29347-29366 | Msa1440400:intron | 30.0% |
| !!! | TTTGTGTTGTTTTTCCTCTT+TGG | + | tig0029080:29399-29418 | None:intergenic | 30.0% |
| !! | AAGCTCTAGAAAGAAGAATT+AGG | + | tig0029080:29452-29471 | None:intergenic | 30.0% |
| ! | GTTTTTCTACAATATGCGAA+TGG | - | tig0029080:29491-29510 | Msa1440400:intron | 30.0% |
| CTGAGGATTATTAATCTTCT+CGG | - | tig0029080:29519-29538 | Msa1440400:intron | 30.0% | |
| ! | TCACATGTCATTTCAGAATT+CGG | - | tig0029080:29855-29874 | Msa1440400:CDS | 30.0% |
| ! | TTATTCCTGATGGATACAAT+TGG | + | tig0029080:30022-30041 | None:intergenic | 30.0% |
| AATTGTATCCATCAGGAATA+AGG | - | tig0029080:30021-30040 | Msa1440400:intron | 30.0% | |
| TCAATATTTCAAGAGCTACA+CGG | + | tig0029080:30073-30092 | None:intergenic | 30.0% | |
| CCTTAAACTCTTGAATTCTT+TGG | + | tig0029080:30106-30125 | None:intergenic | 30.0% | |
| CCAAAGAATTCAAGAGTTTA+AGG | - | tig0029080:30103-30122 | Msa1440400:CDS | 30.0% | |
| GTTTATAGATGCAATGAGAA+AGG | - | tig0029080:30193-30212 | Msa1440400:CDS | 30.0% | |
| ATCATGTATGAGTTCGAAAA+CGG | + | tig0029080:30297-30316 | None:intergenic | 30.0% | |
| ATACATGATGCAACTGTAAA+TGG | - | tig0029080:30308-30327 | Msa1440400:CDS | 30.0% | |
| AGATGCAAAGAGAAATTCTA+TGG | - | tig0029080:30444-30463 | Msa1440400:CDS | 30.0% | |
| AAGAGAAATTCTATGGTTCA+AGG | - | tig0029080:30451-30470 | Msa1440400:CDS | 30.0% | |
| TTTCACAATATGTTATAGCG+CGG | + | tig0029080:30921-30940 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCTTCCTTACACTT+GGG | + | tig0029080:30975-30994 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCTTCCTTACACT+TGG | + | tig0029080:30976-30995 | None:intergenic | 30.0% |
| ! | TCTTTTCACTTCTTCAACTT+CGG | - | tig0029080:31232-31251 | Msa1440400:intron | 30.0% |
| ! | CTGAATATGAGATTTGGAAC+AGG | - | tig0029080:26892-26911 | Msa1440400:CDS | 35.0% |
| ! | AGATTTGGAACAGGAAGAAT+GGG | - | tig0029080:26901-26920 | Msa1440400:CDS | 35.0% |
| TTCATATTGCTAAAGAAGCC+TGG | - | tig0029080:26985-27004 | Msa1440400:CDS | 35.0% | |
| TACATACCTTGCTCAATATC+TGG | + | tig0029080:27053-27072 | None:intergenic | 35.0% | |
| ! | TAAGTGTCTTTTGTGAGTCA+TGG | - | tig0029080:27178-27197 | Msa1440400:CDS | 35.0% |
| ATTAAGTCCTGTCTCATAGT+CGG | + | tig0029080:27210-27229 | None:intergenic | 35.0% | |
| !! | AAAAGAATTGTGTTGACTCG+TGG | - | tig0029080:27428-27447 | Msa1440400:intron | 35.0% |
| !! | AAAGAATTGTGTTGACTCGT+GGG | - | tig0029080:27429-27448 | Msa1440400:intron | 35.0% |
| AGTTACAACGCTTAAGATTG+GGG | + | tig0029080:27668-27687 | None:intergenic | 35.0% | |
| TGTGCAGCGATTTATATTGA+AGG | + | tig0029080:27919-27938 | None:intergenic | 35.0% | |
| TATATTCCACATCCTCTATG+GGG | - | tig0029080:28002-28021 | Msa1440400:CDS | 35.0% | |
| CGAGGAAATTGTGAAGAAAT+TGG | - | tig0029080:28060-28079 | Msa1440400:CDS | 35.0% | |
| TGAAGAAATTGGTGAAGGAA+GGG | - | tig0029080:28071-28090 | Msa1440400:CDS | 35.0% | |
| GTGAAAATGAAAGACAATCG+AGG | - | tig0029080:28106-28125 | Msa1440400:intron | 35.0% | |
| TATAGCGAAGTGTATGACTA+TGG | - | tig0029080:28174-28193 | Msa1440400:CDS | 35.0% | |
| TAAGAAAATATCACGGTCAG+AGG | - | tig0029080:28201-28220 | Msa1440400:CDS | 35.0% | |
| !! | CATTGGTCTTCATAGATAAC+AGG | + | tig0029080:28228-28247 | None:intergenic | 35.0% |
| ! | CGATTCAAAGTGTGATTTGT+GGG | + | tig0029080:28529-28548 | None:intergenic | 35.0% |
| CCACAAATCACACTTTGAAT+CGG | - | tig0029080:28527-28546 | Msa1440400:intron | 35.0% | |
| AATTCATGCACTTCTCTTTC+AGG | + | tig0029080:29344-29363 | None:intergenic | 35.0% | |
| !! | GAGAAGTGCATGAATTTTAC+GGG | - | tig0029080:29348-29367 | Msa1440400:intron | 35.0% |
| TCTTGCAAATATTGCCAAAG+AGG | - | tig0029080:29382-29401 | Msa1440400:intron | 35.0% | |
| !! | ATCTTCTCGGTTGTTTCTTT+AGG | - | tig0029080:29532-29551 | Msa1440400:intron | 35.0% |
| ! | GTTTCTTTAGGAAGGTTATG+TGG | - | tig0029080:29544-29563 | Msa1440400:intron | 35.0% |
| AAGATCACAGATCACAACAA+GGG | + | tig0029080:29684-29703 | None:intergenic | 35.0% | |
| AAAGATCACAGATCACAACA+AGG | + | tig0029080:29685-29704 | None:intergenic | 35.0% | |
| TCGGTACTATTAAAGTTCTC+TGG | - | tig0029080:29874-29893 | Msa1440400:CDS | 35.0% | |
| TAATTAATCACAAAGAGGGG+AGG | + | tig0029080:29978-29997 | None:intergenic | 35.0% | |
| TAAGGAATCAGAACTTAGAG+AGG | - | tig0029080:30121-30140 | Msa1440400:CDS | 35.0% | |
| ! | TTTTATCAATGGCCCATAAG+AGG | + | tig0029080:30229-30248 | None:intergenic | 35.0% |
| ATGATGCAACTGTAAATGGA+CGG | - | tig0029080:30312-30331 | Msa1440400:CDS | 35.0% | |
| GCTTATATGTTGGAACAAAG+AGG | - | tig0029080:30530-30549 | Msa1440400:intron | 35.0% | |
| GAGAAGAGATTAGAGAGTTT+AGG | - | tig0029080:30591-30610 | Msa1440400:intron | 35.0% | |
| GTTGGTTGTGAAGTTGTTAT+AGG | + | tig0029080:30717-30736 | None:intergenic | 35.0% | |
| TATAGCGCGGTTAAAATTCA+TGG | + | tig0029080:30908-30927 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCCTTACACTTG+GGG | + | tig0029080:30974-30993 | None:intergenic | 35.0% |
| TTAGGATTCCAATGAAGAGA+AGG | + | tig0029080:31259-31278 | None:intergenic | 35.0% | |
| TCTCTTCATTGGAATCCTAA+CGG | - | tig0029080:31259-31278 | Msa1440400:intron | 35.0% | |
| AGAAACCACAGAGAAGAAAA+GGG | + | tig0029080:31348-31367 | None:intergenic | 35.0% | |
| TAGAAACCACAGAGAAGAAA+AGG | + | tig0029080:31349-31368 | None:intergenic | 35.0% | |
| !! | TTCACTTGCTATGCTCTTAA+AGG | - | tig0029080:31388-31407 | Msa1440400:CDS | 35.0% |
| !! | TCACTTGCTATGCTCTTAAA+GGG | - | tig0029080:31389-31408 | Msa1440400:CDS | 35.0% |
| ACTTGAAAATCTCAAGGAAG+AGG | + | tig0029080:31490-31509 | None:intergenic | 35.0% | |
| CTGTAGACTTGAAAATCTCA+AGG | + | tig0029080:31496-31515 | None:intergenic | 35.0% | |
| GTGACCTCTATTCCTGAAAT+TGG | - | tig0029080:26855-26874 | Msa1440400:CDS | 40.0% | |
| ! | GAGATTTGGAACAGGAAGAA+TGG | - | tig0029080:26900-26919 | Msa1440400:CDS | 40.0% |
| AGTTGCACCCAATTTATTCC+AGG | + | tig0029080:27006-27025 | None:intergenic | 40.0% | |
| ACCTTGCTCAATATCTGGAT+CGG | + | tig0029080:27048-27067 | None:intergenic | 40.0% | |
| !! | AAGAATTGTGTTGACTCGTG+GGG | - | tig0029080:27430-27449 | Msa1440400:intron | 40.0% |
| TAGGTAAGGGAGAAGCAATA+AGG | - | tig0029080:27582-27601 | Msa1440400:intron | 40.0% | |
| AAGAACAACCAACGGCATTT+AGG | - | tig0029080:27688-27707 | Msa1440400:intron | 40.0% | |
| !! | CATGCTTTAATTTGCAGGTG+TGG | - | tig0029080:27880-27899 | Msa1440400:intron | 40.0% |
| CTGCACAAGTATATTGAGAG+CGG | - | tig0029080:27932-27951 | Msa1440400:intron | 40.0% | |
| GTGAAGAAATTGGTGAAGGA+AGG | - | tig0029080:28070-28089 | Msa1440400:CDS | 40.0% | |
| CTTCGCTATATTCGTGTTTC+CGG | + | tig0029080:28164-28183 | None:intergenic | 40.0% | |
| AACAGGGATTTCACCATCAT+TGG | + | tig0029080:28245-28264 | None:intergenic | 40.0% | |
| GCCGATGATAATTATCGCAA+TGG | - | tig0029080:28337-28356 | Msa1440400:CDS | 40.0% | |
| ! | CTGCAGAAATATTTGGTTCG+TGG | - | tig0029080:28386-28405 | Msa1440400:intron | 40.0% |
| CCGATTCAAAGTGTGATTTG+TGG | + | tig0029080:28530-28549 | None:intergenic | 40.0% | |
| TGTGCAACCATTATACGCAT+TGG | - | tig0029080:28554-28573 | Msa1440400:intron | 40.0% | |
| !! | TTTCCAAGTGGTAGTGGATA+TGG | - | tig0029080:28594-28613 | Msa1440400:intron | 40.0% |
| !! | TTCCAAGTGGTAGTGGATAT+GGG | - | tig0029080:28595-28614 | Msa1440400:intron | 40.0% |
| TTCTCGGTAGTGAAATAGCT+AGG | - | tig0029080:28714-28733 | Msa1440400:intron | 40.0% | |
| TTACTCCTCAATTGTCCCTT+CGG | + | tig0029080:29200-29219 | None:intergenic | 40.0% | |
| !! | AAGCGGAAGTAGATTAGTCT+TGG | + | tig0029080:29306-29325 | None:intergenic | 40.0% |
| CAACACAAAGCTTCTTTCGT+AGG | - | tig0029080:29410-29429 | Msa1440400:intron | 40.0% | |
| CAAAGCTTCTTTCGTAGGTA+TGG | - | tig0029080:29415-29434 | Msa1440400:intron | 40.0% | |
| !! | TCTCGGTTGTTTCTTTAGGA+AGG | - | tig0029080:29536-29555 | Msa1440400:intron | 40.0% |
| ! | CTTTAGGAAGGTTATGTGGA+CGG | - | tig0029080:29548-29567 | Msa1440400:intron | 40.0% |
| TTTATCGCCAGTAAAGCAGT+TGG | - | tig0029080:29579-29598 | Msa1440400:intron | 40.0% | |
| TTATCGCCAGTAAAGCAGTT+GGG | - | tig0029080:29580-29599 | Msa1440400:intron | 40.0% | |
| AACTTACCCAACTGCTTTAC+TGG | + | tig0029080:29589-29608 | None:intergenic | 40.0% | |
| TCTGGATTACAAGACGTATC+CGG | + | tig0029080:29732-29751 | None:intergenic | 40.0% | |
| TCTTGTAATCCAGACCCTAA+GGG | - | tig0029080:29738-29757 | Msa1440400:intron | 40.0% | |
| GCTTTGTATTCACACCCTTA+GGG | + | tig0029080:29755-29774 | None:intergenic | 40.0% | |
| CACACATATATAACAGGGAC+TGG | + | tig0029080:29777-29796 | None:intergenic | 40.0% | |
| ! | TCCTGATGGATACAATTGGA+GGG | + | tig0029080:30018-30037 | None:intergenic | 40.0% |
| ! | TTCCTGATGGATACAATTGG+AGG | + | tig0029080:30019-30038 | None:intergenic | 40.0% |
| TATTTCAAGAGCTACACGGT+AGG | + | tig0029080:30069-30088 | None:intergenic | 40.0% | |
| ATCAGAACTTAGAGAGGCTT+CGG | - | tig0029080:30127-30146 | Msa1440400:CDS | 40.0% | |
| ! | GTTCGAAAACGGCTTTTCTA+CGG | + | tig0029080:30286-30305 | None:intergenic | 40.0% |
| AATTGCCAAATGCGTCTACA+CGG | + | tig0029080:30355-30374 | None:intergenic | 40.0% | |
| TTGCACTTGGCAGGATATTT+AGG | - | tig0029080:30380-30399 | Msa1440400:CDS | 40.0% | |
| TGCACTTGGCAGGATATTTA+GGG | - | tig0029080:30381-30400 | Msa1440400:CDS | 40.0% | |
| TCTGATCTTGATCGTAGATC+CGG | - | tig0029080:30410-30429 | Msa1440400:CDS | 40.0% | |
| ! | GTGAAATTTTGTGAAGGCAG+TGG | - | tig0029080:30935-30954 | Msa1440400:intron | 40.0% |
| ! | AAATTTTGTGAAGGCAGTGG+AGG | - | tig0029080:30938-30957 | Msa1440400:intron | 40.0% |
| CTTTCTGTAAATAGCTCACG+AGG | + | tig0029080:31014-31033 | None:intergenic | 40.0% | |
| GCTATTTACAGAAAGCCACA+AGG | - | tig0029080:31019-31038 | Msa1440400:intron | 40.0% | |
| AAATGGGCAAAAGATACAGC+TGG | - | tig0029080:31062-31081 | Msa1440400:intron | 40.0% | |
| ! | AGCTGGTTCATTTACTCTTG+TGG | - | tig0029080:31079-31098 | Msa1440400:intron | 40.0% |
| TGTCTTGATTGTTTCCACCA+GGG | + | tig0029080:31148-31167 | None:intergenic | 40.0% | |
| TTGTCTTGATTGTTTCCACC+AGG | + | tig0029080:31149-31168 | None:intergenic | 40.0% | |
| GGTGGAAACAATCAAGACAA+TGG | - | tig0029080:31149-31168 | Msa1440400:intron | 40.0% | |
| TCCTTAAGTCATTGCCACTA+AGG | - | tig0029080:31303-31322 | Msa1440400:intron | 40.0% | |
| ACCTTAGTGGCAATGACTTA+AGG | + | tig0029080:31307-31326 | None:intergenic | 40.0% | |
| AGTGCGAAAAGTAACCTTAG+TGG | + | tig0029080:31320-31339 | None:intergenic | 40.0% | |
| TAGAACGATAACAGGAACAC+TGG | + | tig0029080:31450-31469 | None:intergenic | 40.0% | |
| CGCACCAATTTCAGGAATAG+AGG | + | tig0029080:26862-26881 | None:intergenic | 45.0% | |
| TTAGAACGCGCACCAATTTC+AGG | + | tig0029080:26870-26889 | None:intergenic | 45.0% | |
| TTGGAACAGGAAGAATGGGA+AGG | - | tig0029080:26905-26924 | Msa1440400:CDS | 45.0% | |
| GACTAAACCGACTATGAGAC+AGG | - | tig0029080:27200-27219 | Msa1440400:CDS | 45.0% | |
| !! | AGAATTGTGTTGACTCGTGG+GGG | - | tig0029080:27431-27450 | Msa1440400:intron | 45.0% |
| AACCAACGGCATTTAGGCTT+TGG | - | tig0029080:27694-27713 | Msa1440400:intron | 45.0% | |
| ACCAACGGCATTTAGGCTTT+GGG | - | tig0029080:27695-27714 | Msa1440400:intron | 45.0% | |
| !! | GCTTTAATTTGCAGGTGTGG+TGG | - | tig0029080:27883-27902 | Msa1440400:intron | 45.0% |
| AGTATATTGAGAGCGGTGAG+TGG | - | tig0029080:27939-27958 | Msa1440400:CDS | 45.0% | |
| AACTACCGCAACGTGAAGAA+CGG | + | tig0029080:28032-28051 | None:intergenic | 45.0% | |
| TAGCAGCAGCAAGAAGAACA+GGG | + | tig0029080:28261-28280 | None:intergenic | 45.0% | |
| TTAGCAGCAGCAAGAAGAAC+AGG | + | tig0029080:28262-28281 | None:intergenic | 45.0% | |
| TGTTCTTCTTGCTGCTGCTA+AGG | - | tig0029080:28261-28280 | Msa1440400:CDS | 45.0% | |
| GTTCTTCTTGCTGCTGCTAA+GGG | - | tig0029080:28262-28281 | Msa1440400:CDS | 45.0% | |
| TCTTTACCGTTGTACACCGT+TGG | - | tig0029080:28306-28325 | Msa1440400:CDS | 45.0% | |
| TGCGATAATTATCATCGGCC+AGG | + | tig0029080:28336-28355 | None:intergenic | 45.0% | |
| ! | GAGGCATTTGAGGAAATCGT+TGG | + | tig0029080:28503-28522 | None:intergenic | 45.0% |
| ! | AAGTGTGATTTGTGGGCAAG+AGG | + | tig0029080:28522-28541 | None:intergenic | 45.0% |
| ATGCGTGCCAATGCGTATAA+TGG | + | tig0029080:28564-28583 | None:intergenic | 45.0% | |
| ATGCCTTCTGTGTTTCCAAG+TGG | - | tig0029080:28582-28601 | Msa1440400:intron | 45.0% | |
| CTACCACTTGGAAACACAGA+AGG | + | tig0029080:28588-28607 | None:intergenic | 45.0% | |
| TCTGTGTTTCCAAGTGGTAG+TGG | - | tig0029080:28588-28607 | Msa1440400:intron | 45.0% | |
| AACCCATATCCACTACCACT+TGG | + | tig0029080:28600-28619 | None:intergenic | 45.0% | |
| TCGGGGACATCCGATAAAAT+TGG | + | tig0029080:29181-29200 | None:intergenic | 45.0% | |
| ! | ATTTTATCGGATGTCCCCGA+AGG | - | tig0029080:29181-29200 | Msa1440400:intron | 45.0% |
| ! | TTTTATCGGATGTCCCCGAA+GGG | - | tig0029080:29182-29201 | Msa1440400:intron | 45.0% |
| TACTCCTCAATTGTCCCTTC+GGG | + | tig0029080:29199-29218 | None:intergenic | 45.0% | |
| ATATGCGAATGGCGATTCTG+AGG | - | tig0029080:29502-29521 | Msa1440400:intron | 45.0% | |
| GTCTTGTAATCCAGACCCTA+AGG | - | tig0029080:29737-29756 | Msa1440400:intron | 45.0% | |
| ! | GGCTTTGTATTCACACCCTT+AGG | + | tig0029080:29756-29775 | None:intergenic | 45.0% |
| TCCCTCCAATTGTATCCATC+AGG | - | tig0029080:30014-30033 | Msa1440400:intron | 45.0% | |
| ATGTTGCAAGCAGCAAAGCA+TGG | - | tig0029080:30161-30180 | Msa1440400:CDS | 45.0% | |
| TGTTGCAAGCAGCAAAGCAT+GGG | - | tig0029080:30162-30181 | Msa1440400:CDS | 45.0% | |
| AGGGTAATCCTGACCTCTTA+TGG | - | tig0029080:30213-30232 | Msa1440400:CDS | 45.0% | |
| GGGTAATCCTGACCTCTTAT+GGG | - | tig0029080:30214-30233 | Msa1440400:CDS | 45.0% | |
| AAATGCCGTGTAGACGCATT+TGG | - | tig0029080:30347-30366 | Msa1440400:CDS | 45.0% | |
| TGGCAATTCCATGTTGCACT+TGG | - | tig0029080:30367-30386 | Msa1440400:CDS | 45.0% | |
| AATTCCATGTTGCACTTGGC+AGG | - | tig0029080:30371-30390 | Msa1440400:CDS | 45.0% | |
| ATATCCTGCCAAGTGCAACA+TGG | + | tig0029080:30378-30397 | None:intergenic | 45.0% | |
| CTACGATCAAGATCAGAGGA+AGG | + | tig0029080:30407-30426 | None:intergenic | 45.0% | |
| GGATCTACGATCAAGATCAG+AGG | + | tig0029080:30411-30430 | None:intergenic | 45.0% | |
| TCTCTTTGCATCTGCATAGC+AGG | + | tig0029080:30437-30456 | None:intergenic | 45.0% | |
| CATGTATGTATGCGAGTGAG+AGG | + | tig0029080:30504-30523 | None:intergenic | 45.0% | |
| CATGCGTGCAGCTTATATGT+TGG | - | tig0029080:30520-30539 | Msa1440400:intron | 45.0% | |
| AATTGTGCACCCCAAGTGTA+AGG | - | tig0029080:30962-30981 | Msa1440400:intron | 45.0% | |
| GTGATGTCGTGCAAGAACAA+GGG | + | tig0029080:31179-31198 | None:intergenic | 45.0% | |
| TGTGATGTCGTGCAAGAACA+AGG | + | tig0029080:31180-31199 | None:intergenic | 45.0% | |
| ACTTCGGTCCTTCTCTTCAT+TGG | - | tig0029080:31248-31267 | Msa1440400:intron | 45.0% | |
| ! | CATTGCCCTTTTCTTCTCTG+TGG | - | tig0029080:31340-31359 | Msa1440400:CDS | 45.0% |
| CATAGCAAGTGAAGCACAGA+AGG | + | tig0029080:31381-31400 | None:intergenic | 45.0% | |
| GACGGAACTAGAACGATAAC+AGG | + | tig0029080:31458-31477 | None:intergenic | 45.0% | |
| ATCTTGTGGGACATGGTCTG+TGG | - | tig0029080:26826-26845 | Msa1440400:CDS | 50.0% | |
| TCTTGTGGGACATGGTCTGT+GGG | - | tig0029080:26827-26846 | Msa1440400:CDS | 50.0% | |
| GCCGATCCAGATATTGAGCA+AGG | - | tig0029080:27044-27063 | Msa1440400:CDS | 50.0% | |
| AAACCTCTCCCAAGACGATC+TGG | - | tig0029080:27500-27519 | Msa1440400:intron | 50.0% | |
| AAACCAGATCGTCTTGGGAG+AGG | + | tig0029080:27506-27525 | None:intergenic | 50.0% | |
| TCTCCCAAGACGATCTGGTT+TGG | - | tig0029080:27505-27524 | Msa1440400:intron | 50.0% | |
| ! | CTCCCAAGACGATCTGGTTT+GGG | - | tig0029080:27506-27525 | Msa1440400:intron | 50.0% |
| ! | TCCCAAGACGATCTGGTTTG+GGG | - | tig0029080:27507-27526 | Msa1440400:intron | 50.0% |
| TCCCCAAACCAGATCGTCTT+GGG | + | tig0029080:27511-27530 | None:intergenic | 50.0% | |
| ACCCAAAGCCTAAATGCCGT+TGG | + | tig0029080:27699-27718 | None:intergenic | 50.0% | |
| !! | AACGGCATTTAGGCTTTGGG+TGG | - | tig0029080:27698-27717 | Msa1440400:intron | 50.0% |
| ATTCCACATCCTCTATGGGG+AGG | - | tig0029080:28005-28024 | Msa1440400:CDS | 50.0% | |
| TTCACGTTGCGGTAGTTGCT+GGG | - | tig0029080:28035-28054 | Msa1440400:CDS | 50.0% | |
| CAGCTCAGCAACAAGAGCTA+GGG | + | tig0029080:28140-28159 | None:intergenic | 50.0% | |
| TCAGCTCAGCAACAAGAGCT+AGG | + | tig0029080:28141-28160 | None:intergenic | 50.0% | |
| GGTCTTCCAACGGTGTACAA+CGG | + | tig0029080:28315-28334 | None:intergenic | 50.0% | |
| TTGTACACCGTTGGAAGACC+TGG | - | tig0029080:28315-28334 | Msa1440400:CDS | 50.0% | |
| !! | TTGTGGGCAAGAGGCATTTG+AGG | + | tig0029080:28513-28532 | None:intergenic | 50.0% |
| ACTCCTCAATTGTCCCTTCG+GGG | + | tig0029080:29198-29217 | None:intergenic | 50.0% | |
| TCACAACAAGGGTTCGCACA+AGG | + | tig0029080:29673-29692 | None:intergenic | 50.0% | |
| TCCGTTTGTGTGCTTTGCAC+CGG | - | tig0029080:29710-29729 | Msa1440400:intron | 50.0% | |
| TCCGGTGCAAAGCACACAAA+CGG | + | tig0029080:29714-29733 | None:intergenic | 50.0% | |
| GTATTCACACCCTTAGGGTC+TGG | + | tig0029080:29750-29769 | None:intergenic | 50.0% | |
| TCAATGGCCCATAAGAGGTC+AGG | + | tig0029080:30224-30243 | None:intergenic | 50.0% | |
| TTGCATCTGCATAGCAGGAC+CGG | + | tig0029080:30432-30451 | None:intergenic | 50.0% | |
| TACAGAAAGCCACAAGGAGC+TGG | - | tig0029080:31025-31044 | Msa1440400:intron | 50.0% | |
| ACAAGGAGCTGGTGAAAGCT+GGG | - | tig0029080:31036-31055 | Msa1440400:intron | 50.0% | |
| TGGTGAAAGCTGGGGAGAAA+TGG | - | tig0029080:31045-31064 | Msa1440400:intron | 50.0% | |
| GGTGAAAGCTGGGGAGAAAT+GGG | - | tig0029080:31046-31065 | Msa1440400:intron | 50.0% | |
| TTTCAGCGTAACGAGCCGTT+AGG | + | tig0029080:31277-31296 | None:intergenic | 50.0% | |
| ! | AGGAAGAGGCGCAATTGTGA+CGG | + | tig0029080:31476-31495 | None:intergenic | 50.0% |
| CTTGTGGGACATGGTCTGTG+GGG | - | tig0029080:26828-26847 | Msa1440400:CDS | 55.0% | |
| GTCCCCAAACCAGATCGTCT+TGG | + | tig0029080:27512-27531 | None:intergenic | 55.0% | |
| GGTTTGGGGACGAAGCAATG+AGG | - | tig0029080:27521-27540 | Msa1440400:intron | 55.0% | |
| AAGAACGGTCCTCCCCATAG+AGG | + | tig0029080:28017-28036 | None:intergenic | 55.0% | |
| GAGGACCGTTCTTCACGTTG+CGG | - | tig0029080:28024-28043 | Msa1440400:CDS | 55.0% | |
| CTTCACGTTGCGGTAGTTGC+TGG | - | tig0029080:28034-28053 | Msa1440400:CDS | 55.0% | |
| GCTCTTGTTGCTGAGCTGAC+CGG | - | tig0029080:28142-28161 | Msa1440400:CDS | 55.0% | |
| TCATCGGCCAGGTCTTCCAA+CGG | + | tig0029080:28325-28344 | None:intergenic | 55.0% | |
| TGTCCCCGAAGGGACAATTG+AGG | - | tig0029080:29192-29211 | Msa1440400:intron | 55.0% | |
| CAGCTTTCACCAGCTCCTTG+TGG | + | tig0029080:31037-31056 | None:intergenic | 55.0% | |
| CACAAGGAGCTGGTGAAAGC+TGG | - | tig0029080:31035-31054 | Msa1440400:intron | 55.0% | |
| CAAGGAGCTGGTGAAAGCTG+GGG | - | tig0029080:31037-31056 | Msa1440400:intron | 55.0% | |
| GGTCCTCCCCATAGAGGATG+TGG | + | tig0029080:28011-28030 | None:intergenic | 60.0% | |
| GCTGCAGCTTTCACTGTCCC+TGG | - | tig0029080:31128-31147 | Msa1440400:intron | 60.0% | |
| GCAGCTTTCACTGTCCCTGG+TGG | - | tig0029080:31131-31150 | Msa1440400:intron | 60.0% | |
| TGCGGTAGTTGCTGGGCACG+AGG | - | tig0029080:28042-28061 | Msa1440400:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029080 | gene | 26822 | 31583 | 26822 | ID=Msa1440400;Name=Msa1440400 |
| tig0029080 | mRNA | 26822 | 31583 | 26822 | ID=Msa1440400-mRNA-1;Parent=Msa1440400;Name=Msa1440400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.16|0.14|7|0|610 |
| tig0029080 | exon | 31340 | 31583 | 31340 | ID=Msa1440400-mRNA-1:exon:12252;Parent=Msa1440400-mRNA-1 |
| tig0029080 | exon | 30278 | 30508 | 30278 | ID=Msa1440400-mRNA-1:exon:12251;Parent=Msa1440400-mRNA-1 |
| tig0029080 | exon | 30047 | 30268 | 30047 | ID=Msa1440400-mRNA-1:exon:12250;Parent=Msa1440400-mRNA-1 |
| tig0029080 | exon | 29763 | 29924 | 29763 | ID=Msa1440400-mRNA-1:exon:12249;Parent=Msa1440400-mRNA-1 |
| tig0029080 | exon | 28121 | 28369 | 28121 | ID=Msa1440400-mRNA-1:exon:12248;Parent=Msa1440400-mRNA-1 |
| tig0029080 | exon | 27933 | 28111 | 27933 | ID=Msa1440400-mRNA-1:exon:12247;Parent=Msa1440400-mRNA-1 |
| tig0029080 | exon | 26822 | 27364 | 26822 | ID=Msa1440400-mRNA-1:exon:12246;Parent=Msa1440400-mRNA-1 |
| tig0029080 | CDS | 31340 | 31583 | 31340 | ID=Msa1440400-mRNA-1:cds;Parent=Msa1440400-mRNA-1 |
| tig0029080 | CDS | 30278 | 30508 | 30278 | ID=Msa1440400-mRNA-1:cds;Parent=Msa1440400-mRNA-1 |
| tig0029080 | CDS | 30047 | 30268 | 30047 | ID=Msa1440400-mRNA-1:cds;Parent=Msa1440400-mRNA-1 |
| tig0029080 | CDS | 29763 | 29924 | 29763 | ID=Msa1440400-mRNA-1:cds;Parent=Msa1440400-mRNA-1 |
| tig0029080 | CDS | 28121 | 28369 | 28121 | ID=Msa1440400-mRNA-1:cds;Parent=Msa1440400-mRNA-1 |
| tig0029080 | CDS | 27933 | 28111 | 27933 | ID=Msa1440400-mRNA-1:cds;Parent=Msa1440400-mRNA-1 |
| tig0029080 | CDS | 26822 | 27364 | 26822 | ID=Msa1440400-mRNA-1:cds;Parent=Msa1440400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
