Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143740 | XP_024640501.2 | 66.424 | 688 | 130 | 7 | 1 | 589 | 28 | 713 | 0.0 | 882 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143740 | A0A396HTM3 | 66.383 | 705 | 120 | 10 | 1 | 590 | 32 | 734 | 0.0 | 871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0143740 | 0.813484 | 2.500739e-51 | -8.615850e-47 |
| Msa0048950 | Msa0143740 | 0.848029 | 7.949778e-60 | -8.615850e-47 |
| Msa0051100 | Msa0143740 | -0.800140 | 1.657117e-48 | -8.615850e-47 |
| Msa0054760 | Msa0143740 | -0.800277 | 1.554391e-48 | -8.615850e-47 |
| Msa0059880 | Msa0143740 | 0.881825 | 1.739553e-70 | -8.615850e-47 |
| Msa0072030 | Msa0143740 | 0.811547 | 6.629839e-51 | -8.615850e-47 |
| Msa0101650 | Msa0143740 | -0.803765 | 2.981274e-49 | -8.615850e-47 |
| Msa0139460 | Msa0143740 | 0.812300 | 4.544892e-51 | -8.615850e-47 |
| Msa0140270 | Msa0143740 | 0.809521 | 1.815891e-50 | -8.615850e-47 |
| Msa0143680 | Msa0143740 | 0.964465 | 2.318490e-123 | -8.615850e-47 |
| Msa0143710 | Msa0143740 | 0.977696 | 2.676395e-144 | -8.615850e-47 |
| Msa0143740 | Msa0143770 | 0.997238 | 4.074121e-239 | -8.615850e-47 |
| Msa0143740 | Msa0147670 | 0.814241 | 1.703311e-51 | -8.615850e-47 |
| Msa0143740 | Msa0150910 | 0.851900 | 6.566711e-61 | -8.615850e-47 |
| Msa0143740 | Msa0155850 | 0.802702 | 4.948642e-49 | -8.615850e-47 |
| Msa0143740 | Msa0163340 | 0.815043 | 1.131298e-51 | -8.615850e-47 |
| Msa0143740 | Msa0177550 | 0.808467 | 3.053612e-50 | -8.615850e-47 |
| Msa0143740 | Msa0190670 | 0.823326 | 1.471145e-53 | -8.615850e-47 |
| Msa0143740 | Msa0212550 | 0.803932 | 2.753102e-49 | -8.615850e-47 |
| Msa0143740 | Msa0219210 | 0.809586 | 1.758635e-50 | -8.615850e-47 |
| Msa0143740 | Msa0252930 | 0.811124 | 8.189040e-51 | -8.615850e-47 |
| Msa0143740 | Msa0259110 | 0.831084 | 2.039090e-55 | -8.615850e-47 |
| Msa0143740 | Msa0259300 | 0.808527 | 2.964929e-50 | -8.615850e-47 |
| Msa0143740 | Msa0274250 | 0.814696 | 1.350489e-51 | -8.615850e-47 |
| Msa0143740 | Msa0274260 | 0.811822 | 5.776430e-51 | -8.615850e-47 |
| Msa0143740 | Msa0278950 | 0.818498 | 1.900119e-52 | -8.615850e-47 |
| Msa0143740 | Msa0298270 | 0.830476 | 2.875110e-55 | -8.615850e-47 |
| Msa0143740 | Msa0336070 | 0.815035 | 1.136430e-51 | -8.615850e-47 |
| Msa0143740 | Msa0342130 | 0.822261 | 2.603235e-53 | -8.615850e-47 |
| Msa0143740 | Msa0342160 | 0.816678 | 4.886382e-52 | -8.615850e-47 |
| Msa0143740 | Msa0343720 | 0.806351 | 8.580626e-50 | -8.615850e-47 |
| Msa0143740 | Msa0374130 | 0.813657 | 2.291139e-51 | -8.615850e-47 |
| Msa0143740 | Msa0430460 | 0.801495 | 8.766400e-49 | -8.615850e-47 |
| Msa0143740 | Msa0469550 | 0.818105 | 2.331340e-52 | -8.615850e-47 |
| Msa0143740 | Msa0491760 | 0.805508 | 1.290655e-49 | -8.615850e-47 |
| Msa0143740 | Msa0515260 | 0.818278 | 2.130233e-52 | -8.615850e-47 |
| Msa0143740 | Msa0535570 | 0.835723 | 1.421393e-56 | -8.615850e-47 |
| Msa0143740 | Msa0538450 | 0.811839 | 5.726337e-51 | -8.615850e-47 |
| Msa0143740 | Msa0538520 | 0.804561 | 2.036597e-49 | -8.615850e-47 |
| Msa0143740 | Msa0548970 | 0.822701 | 2.058006e-53 | -8.615850e-47 |
| Msa0143740 | Msa0549920 | 0.850916 | 1.246198e-60 | -8.615850e-47 |
| Msa0143740 | Msa0549930 | 0.839486 | 1.539566e-57 | -8.615850e-47 |
| Msa0143740 | Msa0554660 | 0.800277 | 1.553903e-48 | -8.615850e-47 |
| Msa0143740 | Msa0579530 | 0.807261 | 5.511283e-50 | -8.615850e-47 |
| Msa0143740 | Msa0584970 | 0.801952 | 7.064220e-49 | -8.615850e-47 |
| Msa0143740 | Msa0591490 | 0.840894 | 6.602527e-58 | -8.615850e-47 |
| Msa0143740 | Msa0594320 | 0.817080 | 3.970414e-52 | -8.615850e-47 |
| Msa0143740 | Msa0599600 | 0.810806 | 9.596445e-51 | -8.615850e-47 |
| Msa0143740 | Msa0602050 | 0.803766 | 2.981142e-49 | -8.615850e-47 |
| Msa0143740 | Msa0603950 | 0.817082 | 3.964657e-52 | -8.615850e-47 |
| Msa0143740 | Msa0605400 | 0.826592 | 2.492437e-54 | -8.615850e-47 |
| Msa0143740 | Msa0605410 | 0.821802 | 3.326556e-53 | -8.615850e-47 |
| Msa0143740 | Msa0605470 | 0.824481 | 7.884908e-54 | -8.615850e-47 |
| Msa0143740 | Msa0623980 | 0.845918 | 3.008990e-59 | -8.615850e-47 |
| Msa0143740 | Msa0631700 | 0.834116 | 3.608926e-56 | -8.615850e-47 |
| Msa0143740 | Msa0640290 | 0.800131 | 1.664432e-48 | -8.615850e-47 |
| Msa0143740 | Msa0643840 | 0.814287 | 1.663772e-51 | -8.615850e-47 |
| Msa0143740 | Msa0645150 | 0.808026 | 3.790745e-50 | -8.615850e-47 |
| Msa0143740 | Msa0646210 | 0.846355 | 2.288319e-59 | -8.615850e-47 |
| Msa0143740 | Msa0670260 | 0.825793 | 3.861915e-54 | -8.615850e-47 |
| Msa0143740 | Msa0670360 | 0.852552 | 4.282959e-61 | -8.615850e-47 |
| Msa0143740 | Msa0671640 | 0.824053 | 9.941696e-54 | -8.615850e-47 |
| Msa0143740 | Msa0678620 | 0.832551 | 8.864633e-56 | -8.615850e-47 |
| Msa0143740 | Msa0684720 | 0.839821 | 1.259854e-57 | -8.615850e-47 |
| Msa0143740 | Msa0711240 | 0.821717 | 3.481316e-53 | -8.615850e-47 |
| Msa0143740 | Msa0719880 | 0.880422 | 5.559854e-70 | -8.615850e-47 |
| Msa0143740 | Msa0727480 | 0.839528 | 1.501637e-57 | -8.615850e-47 |
| Msa0143740 | Msa0735280 | 0.819152 | 1.349376e-52 | -8.615850e-47 |
| Msa0143740 | Msa0735340 | 0.810732 | 9.956403e-51 | -8.615850e-47 |
| Msa0143740 | Msa0751960 | 0.802543 | 5.336294e-49 | -8.615850e-47 |
| Msa0143740 | Msa0763300 | 0.837218 | 5.918357e-57 | -8.615850e-47 |
| Msa0143740 | Msa0768670 | 0.838079 | 3.558387e-57 | -8.615850e-47 |
| Msa0143740 | Msa0768720 | 0.837556 | 4.848446e-57 | -8.615850e-47 |
| Msa0143740 | Msa0777070 | 0.803381 | 3.581548e-49 | -8.615850e-47 |
| Msa0143740 | Msa0777250 | 0.810049 | 1.398201e-50 | -8.615850e-47 |
| Msa0143740 | Msa0802590 | 0.945198 | 4.780575e-104 | -8.615850e-47 |
| Msa0143740 | Msa0814160 | 0.821569 | 3.765949e-53 | -8.615850e-47 |
| Msa0143740 | Msa0824860 | 0.809096 | 2.240610e-50 | -8.615850e-47 |
| Msa0143740 | Msa0841130 | 0.950010 | 3.970734e-108 | -8.615850e-47 |
| Msa0143740 | Msa0841170 | 0.942420 | 7.421070e-102 | -8.615850e-47 |
| Msa0143740 | Msa0854840 | 0.817985 | 2.481451e-52 | -8.615850e-47 |
| Msa0143740 | Msa0863840 | 0.821538 | 3.827731e-53 | -8.615850e-47 |
| Msa0143740 | Msa0883640 | 0.860539 | 1.925422e-63 | -8.615850e-47 |
| Msa0143740 | Msa0902340 | 0.843643 | 1.235075e-58 | -8.615850e-47 |
| Msa0143740 | Msa0910830 | 0.881684 | 1.956763e-70 | -8.615850e-47 |
| Msa0143740 | Msa0913550 | 0.805146 | 1.536730e-49 | -8.615850e-47 |
| Msa0143740 | Msa0960090 | 0.862528 | 4.755478e-64 | -8.615850e-47 |
| Msa0143740 | Msa0967820 | 0.821753 | 3.414562e-53 | -8.615850e-47 |
| Msa0143740 | Msa0985700 | 0.861812 | 7.887412e-64 | -8.615850e-47 |
| Msa0143740 | Msa0993450 | 0.831266 | 1.840333e-55 | -8.615850e-47 |
| Msa0143740 | Msa1003110 | 0.847697 | 9.813454e-60 | -8.615850e-47 |
| Msa0143740 | Msa1020540 | 0.874311 | 7.456346e-68 | -8.615850e-47 |
| Msa0143740 | Msa1021620 | 0.861820 | 7.842517e-64 | -8.615850e-47 |
| Msa0143740 | Msa1024350 | 0.834878 | 2.323621e-56 | -8.615850e-47 |
| Msa0143740 | Msa1026050 | 0.828338 | 9.501514e-55 | -8.615850e-47 |
| Msa0143740 | Msa1041550 | -0.809331 | 1.994412e-50 | -8.615850e-47 |
| Msa0143740 | Msa1041630 | 0.812577 | 3.952491e-51 | -8.615850e-47 |
| Msa0143740 | Msa1046210 | 0.807765 | 4.308552e-50 | -8.615850e-47 |
| Msa0143740 | Msa1046220 | 0.804765 | 1.846416e-49 | -8.615850e-47 |
| Msa0143740 | Msa1061670 | 0.838278 | 3.161443e-57 | -8.615850e-47 |
| Msa0143740 | Msa1076830 | 0.815942 | 7.139386e-52 | -8.615850e-47 |
| Msa0143740 | Msa1081530 | -0.815552 | 8.720754e-52 | -8.615850e-47 |
| Msa0143740 | Msa1081610 | 0.816008 | 6.900789e-52 | -8.615850e-47 |
| Msa0143740 | Msa1087370 | 0.810212 | 1.289327e-50 | -8.615850e-47 |
| Msa0143740 | Msa1087380 | 0.836953 | 6.916376e-57 | -8.615850e-47 |
| Msa0143740 | Msa1091000 | 0.827711 | 1.345207e-54 | -8.615850e-47 |
| Msa0143740 | Msa1106960 | 0.826245 | 3.015209e-54 | -8.615850e-47 |
| Msa0143740 | Msa1109880 | 0.837773 | 4.264411e-57 | -8.615850e-47 |
| Msa0143740 | Msa1109890 | 0.870660 | 1.233682e-66 | -8.615850e-47 |
| Msa0143740 | Msa1133860 | 0.844621 | 6.751229e-59 | -8.615850e-47 |
| Msa0143740 | Msa1149020 | 0.854119 | 1.521934e-61 | -8.615850e-47 |
| Msa0143740 | Msa1152180 | 0.807997 | 3.845687e-50 | -8.615850e-47 |
| Msa0143740 | Msa1166530 | 0.816006 | 6.906917e-52 | -8.615850e-47 |
| Msa0143740 | Msa1214960 | 0.829059 | 6.360758e-55 | -8.615850e-47 |
| Msa0143740 | Msa1216600 | 0.818327 | 2.076895e-52 | -8.615850e-47 |
| Msa0143740 | Msa1249410 | -0.812928 | 3.312828e-51 | -8.615850e-47 |
| Msa0143740 | Msa1262810 | 0.800425 | 1.449817e-48 | -8.615850e-47 |
| Msa0143740 | Msa1265500 | 0.808470 | 3.048582e-50 | -8.615850e-47 |
| Msa0143740 | Msa1286420 | 0.841035 | 6.064426e-58 | -8.615850e-47 |
| Msa0143740 | Msa1296870 | 0.826978 | 2.016531e-54 | -8.615850e-47 |
| Msa0143740 | Msa1300610 | 0.834542 | 2.822210e-56 | -8.615850e-47 |
| Msa0143740 | Msa1323030 | 0.837954 | 3.830893e-57 | -8.615850e-47 |
| Msa0143740 | Msa1323120 | 0.816491 | 5.380465e-52 | -8.615850e-47 |
| Msa0143740 | Msa1323160 | 0.823393 | 1.418794e-53 | -8.615850e-47 |
| Msa0143740 | Msa1329740 | 0.816382 | 5.692621e-52 | -8.615850e-47 |
| Msa0143740 | Msa1357490 | 0.822304 | 2.544099e-53 | -8.615850e-47 |
| Msa0143740 | Msa1357720 | -0.804060 | 2.589186e-49 | -8.615850e-47 |
| Msa0143740 | Msa1357750 | 0.826260 | 2.991079e-54 | -8.615850e-47 |
| Msa0143740 | Msa1357860 | 0.804926 | 1.708405e-49 | -8.615850e-47 |
| Msa0143740 | Msa1359620 | -0.822470 | 2.329168e-53 | -8.615850e-47 |
| Msa0143740 | Msa1373560 | 0.836303 | 1.012750e-56 | -8.615850e-47 |
| Msa0143740 | Msa1376070 | 0.823013 | 1.740347e-53 | -8.615850e-47 |
| Msa0143740 | Msa1377520 | 0.821651 | 3.605661e-53 | -8.615850e-47 |
| Msa0143740 | Msa1378400 | 0.816982 | 4.175528e-52 | -8.615850e-47 |
| Msa0143740 | Msa1386120 | 0.803499 | 3.386489e-49 | -8.615850e-47 |
| Msa0143740 | Msa1403700 | -0.822327 | 2.514189e-53 | -8.615850e-47 |
| Msa0143740 | Msa1407670 | 0.810391 | 1.179677e-50 | -8.615850e-47 |
| Msa0143740 | Msa1409060 | 0.817022 | 4.089644e-52 | -8.615850e-47 |
| Msa0143740 | Msa1420020 | 0.816822 | 4.535083e-52 | -8.615850e-47 |
| Msa0143740 | Msa1421120 | 0.806175 | 9.345659e-50 | -8.615850e-47 |
| Msa0143740 | Msa1426420 | 0.806618 | 7.537788e-50 | -8.615850e-47 |
| Msa0143740 | Msa1427670 | 0.802748 | 4.842739e-49 | -8.615850e-47 |
| Msa0143740 | Msa1440400 | 0.948269 | 1.317653e-106 | -8.615850e-47 |
| Msa0143740 | Msa1443550 | -0.805888 | 1.074029e-49 | -8.615850e-47 |
| Msa0143740 | Msa1449770 | 0.811891 | 5.580562e-51 | -8.615850e-47 |
| Msa0143740 | Msa1459610 | 0.823041 | 1.714404e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143740 | MtrunA17_Chr5g0410171 | 66.383 | 705 | 120 | 10 | 1 | 590 | 32 | 734 | 0.0 | 871 |
| Msa0143740 | MtrunA17_Chr5g0410341 | 88.358 | 335 | 6 | 2 | 288 | 589 | 411 | 745 | 0.0 | 585 |
| Msa0143740 | MtrunA17_Chr5g0410341 | 87.859 | 313 | 14 | 4 | 1 | 289 | 30 | 342 | 0.0 | 555 |
| Msa0143740 | MtrunA17_Chr5g0410201 | 77.744 | 328 | 40 | 2 | 296 | 590 | 1 | 328 | 1.25e-178 | 508 |
| Msa0143740 | MtrunA17_Chr5g0410271 | 77.538 | 325 | 40 | 2 | 298 | 589 | 2 | 326 | 3.09e-175 | 499 |
| Msa0143740 | MtrunA17_Chr6g0457101 | 41.333 | 675 | 291 | 16 | 1 | 588 | 30 | 686 | 7.67e-149 | 446 |
| Msa0143740 | MtrunA17_Chr5g0410461 | 52.660 | 376 | 135 | 7 | 260 | 594 | 96 | 469 | 6.48e-113 | 346 |
| Msa0143740 | MtrunA17_Chr6g0456141 | 52.035 | 344 | 124 | 6 | 288 | 597 | 51 | 387 | 2.79e-111 | 338 |
| Msa0143740 | MtrunA17_Chr6g0456101 | 36.262 | 717 | 311 | 24 | 1 | 583 | 30 | 734 | 1.35e-108 | 343 |
| Msa0143740 | MtrunA17_Chr5g0410371 | 59.122 | 296 | 82 | 4 | 329 | 587 | 1 | 294 | 1.72e-102 | 313 |
| Msa0143740 | MtrunA17_Chr5g0410191 | 80.745 | 161 | 31 | 0 | 429 | 589 | 32 | 192 | 6.04e-83 | 258 |
| Msa0143740 | MtrunA17_Chr5g0410581 | 31.410 | 780 | 327 | 25 | 1 | 590 | 31 | 792 | 7.83e-82 | 273 |
| Msa0143740 | MtrunA17_Chr5g0410291 | 67.358 | 193 | 40 | 5 | 110 | 283 | 1 | 189 | 4.38e-77 | 243 |
| Msa0143740 | MtrunA17_Chr5g0410211 | 63.918 | 194 | 50 | 4 | 110 | 283 | 1 | 194 | 6.62e-71 | 227 |
| Msa0143740 | MtrunA17_Chr5g0410181 | 78.947 | 133 | 28 | 0 | 457 | 589 | 1 | 133 | 3.20e-67 | 215 |
| Msa0143740 | MtrunA17_Chr2g0297701 | 31.148 | 549 | 302 | 17 | 90 | 586 | 44 | 568 | 7.11e-61 | 212 |
| Msa0143740 | MtrunA17_Chr5g0443001 | 31.336 | 584 | 301 | 21 | 91 | 587 | 31 | 601 | 2.86e-57 | 203 |
| Msa0143740 | MtrunA17_Chr2g0297691 | 27.039 | 699 | 392 | 24 | 4 | 609 | 36 | 709 | 3.72e-52 | 191 |
| Msa0143740 | MtrunA17_Chr2g0297681 | 26.984 | 693 | 398 | 21 | 4 | 609 | 36 | 707 | 1.28e-49 | 183 |
| Msa0143740 | MtrunA17_Chr2g0297651 | 26.627 | 676 | 387 | 21 | 4 | 590 | 38 | 693 | 2.49e-49 | 182 |
| Msa0143740 | MtrunA17_Chr3g0100741 | 26.381 | 561 | 318 | 12 | 91 | 570 | 33 | 579 | 6.40e-47 | 174 |
| Msa0143740 | MtrunA17_Chr5g0410451 | 49.123 | 171 | 82 | 1 | 429 | 594 | 71 | 241 | 1.51e-46 | 164 |
| Msa0143740 | MtrunA17_Chr2g0297491 | 34.591 | 318 | 161 | 7 | 329 | 609 | 88 | 395 | 5.31e-46 | 167 |
| Msa0143740 | MtrunA17_Chr5g0410541 | 52.121 | 165 | 73 | 2 | 429 | 588 | 53 | 216 | 1.67e-43 | 155 |
| Msa0143740 | MtrunA17_Chr6g0456151 | 42.023 | 257 | 118 | 9 | 1 | 236 | 30 | 276 | 1.22e-42 | 155 |
| Msa0143740 | MtrunA17_Chr5g0410471 | 45.909 | 220 | 105 | 5 | 5 | 221 | 105 | 313 | 8.68e-41 | 150 |
| Msa0143740 | MtrunA17_Chr2g0297481 | 32.588 | 313 | 170 | 7 | 329 | 609 | 186 | 489 | 1.98e-40 | 154 |
| Msa0143740 | MtrunA17_Chr3g0100301 | 41.327 | 196 | 78 | 2 | 418 | 583 | 209 | 397 | 6.11e-39 | 148 |
| Msa0143740 | MtrunA17_Chr3g0096941 | 24.740 | 578 | 333 | 15 | 91 | 581 | 33 | 595 | 1.40e-38 | 150 |
| Msa0143740 | MtrunA17_Chr2g0297711 | 26.542 | 535 | 301 | 17 | 90 | 587 | 47 | 526 | 8.02e-38 | 147 |
| Msa0143740 | MtrunA17_Chr5g0410411 | 39.464 | 261 | 107 | 9 | 1 | 221 | 30 | 279 | 2.44e-36 | 139 |
| Msa0143740 | MtrunA17_Chr5g0410381 | 39.837 | 246 | 101 | 8 | 82 | 286 | 3 | 242 | 4.33e-36 | 135 |
| Msa0143740 | MtrunA17_Chr5g0410251 | 65.060 | 83 | 29 | 0 | 1 | 83 | 28 | 110 | 3.12e-32 | 120 |
| Msa0143740 | MtrunA17_Chr2g0286601 | 32.765 | 293 | 153 | 6 | 311 | 569 | 371 | 653 | 7.09e-30 | 125 |
| Msa0143740 | MtrunA17_Chr5g0410511 | 39.881 | 168 | 96 | 1 | 429 | 591 | 32 | 199 | 1.20e-29 | 116 |
| Msa0143740 | MtrunA17_Chr5g0410501 | 45.139 | 144 | 73 | 3 | 289 | 428 | 147 | 288 | 1.50e-29 | 119 |
| Msa0143740 | MtrunA17_Chr3g0098481 | 28.931 | 318 | 172 | 8 | 316 | 587 | 22 | 331 | 3.11e-28 | 116 |
| Msa0143740 | MtrunA17_Chr3g0102001 | 29.276 | 304 | 165 | 6 | 328 | 588 | 440 | 736 | 2.76e-26 | 114 |
| Msa0143740 | MtrunA17_Chr2g0286551 | 24.664 | 596 | 319 | 16 | 94 | 583 | 83 | 654 | 1.28e-24 | 108 |
| Msa0143740 | MtrunA17_Chr2g0286561 | 38.849 | 139 | 78 | 1 | 431 | 569 | 47 | 178 | 2.55e-24 | 101 |
| Msa0143740 | MtrunA17_Chr5g0410551 | 50.476 | 105 | 46 | 3 | 329 | 429 | 1 | 103 | 2.84e-23 | 95.5 |
| Msa0143740 | MtrunA17_Chr1g0211541 | 25.541 | 462 | 250 | 18 | 101 | 508 | 6 | 427 | 2.17e-22 | 101 |
| Msa0143740 | MtrunA17_Chr3g0098301 | 26.861 | 309 | 182 | 8 | 316 | 583 | 88 | 393 | 3.75e-22 | 99.4 |
| Msa0143740 | MtrunA17_Chr5g0410561 | 37.321 | 209 | 120 | 7 | 32 | 236 | 2 | 203 | 7.78e-22 | 94.4 |
| Msa0143740 | MtrunA17_Chr5g0439081 | 36.076 | 158 | 94 | 3 | 428 | 580 | 41 | 196 | 3.75e-21 | 92.4 |
| Msa0143740 | MtrunA17_Chr2g0284541 | 28.391 | 317 | 184 | 7 | 300 | 581 | 322 | 630 | 1.31e-19 | 93.2 |
| Msa0143740 | MtrunA17_Chr3g0098531 | 27.234 | 235 | 136 | 4 | 385 | 585 | 48 | 281 | 3.81e-19 | 88.6 |
| Msa0143740 | MtrunA17_Chr5g0439061 | 27.740 | 292 | 172 | 5 | 329 | 583 | 437 | 726 | 8.73e-19 | 90.5 |
| Msa0143740 | MtrunA17_Chr2g0284501 | 28.041 | 296 | 168 | 7 | 322 | 581 | 362 | 648 | 1.20e-18 | 90.1 |
| Msa0143740 | MtrunA17_Chr5g0410441 | 48.889 | 90 | 40 | 3 | 344 | 429 | 1 | 88 | 2.58e-18 | 80.9 |
| Msa0143740 | MtrunA17_Chr3g0100921 | 40.650 | 123 | 72 | 1 | 448 | 569 | 2 | 124 | 8.18e-18 | 80.5 |
| Msa0143740 | MtrunA17_Chr5g0439051 | 34.591 | 159 | 102 | 2 | 429 | 586 | 50 | 207 | 1.09e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143740 | AT3G18670.1 | 35.751 | 579 | 281 | 19 | 70 | 587 | 35 | 583 | 4.60e-98 | 311 |
| Msa0143740 | AT3G18670.2 | 33.654 | 624 | 288 | 19 | 70 | 587 | 35 | 638 | 2.00e-95 | 306 |
| Msa0143740 | AT5G04690.3 | 30.756 | 582 | 312 | 14 | 81 | 587 | 66 | 631 | 2.69e-66 | 229 |
| Msa0143740 | AT5G04690.1 | 31.616 | 563 | 312 | 16 | 81 | 587 | 66 | 611 | 1.08e-64 | 224 |
| Msa0143740 | AT5G04690.2 | 30.201 | 596 | 311 | 15 | 81 | 587 | 66 | 645 | 5.92e-64 | 223 |
| Msa0143740 | AT5G04700.1 | 29.711 | 589 | 310 | 15 | 90 | 587 | 80 | 655 | 4.99e-61 | 215 |
| Msa0143740 | AT5G04680.3 | 28.767 | 584 | 316 | 17 | 90 | 587 | 67 | 636 | 1.09e-53 | 194 |
| Msa0143740 | AT5G04680.4 | 28.523 | 596 | 316 | 17 | 90 | 587 | 67 | 650 | 5.24e-52 | 190 |
| Msa0143740 | AT5G04730.1 | 29.795 | 537 | 284 | 16 | 138 | 587 | 58 | 588 | 4.34e-50 | 183 |
| Msa0143740 | AT5G04680.2 | 28.571 | 532 | 274 | 14 | 151 | 587 | 7 | 527 | 2.09e-48 | 177 |
| Msa0143740 | AT5G04680.1 | 27.564 | 624 | 315 | 22 | 90 | 587 | 67 | 679 | 5.59e-47 | 176 |
| Msa0143740 | AT5G35810.1 | 33.887 | 301 | 157 | 6 | 329 | 589 | 35 | 333 | 9.76e-47 | 168 |
| Msa0143740 | AT3G54065.1 | 39.535 | 172 | 68 | 2 | 415 | 550 | 8 | 179 | 1.30e-32 | 125 |
| Msa0143740 | AT5G04700.2 | 25.815 | 399 | 224 | 12 | 90 | 429 | 80 | 465 | 6.68e-24 | 105 |
| Msa0143740 | AT3G54070.1 | 28.324 | 173 | 111 | 6 | 66 | 232 | 24 | 189 | 6.46e-12 | 66.6 |
| Msa0143740 | AT5G35830.1 | 30.000 | 160 | 101 | 4 | 78 | 232 | 73 | 226 | 6.65e-12 | 67.0 |
Find 144 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCACTTGGCAGGATATTT+AGG | 0.127030 | 1_4:+2787783 | Msa0143740:CDS |
| CCAAAGAATTCAAGAGTTTA+AGG | 0.157617 | 1_4:+2787506 | Msa0143740:CDS |
| TTCACTTGCTATGCTCTTAA+AGG | 0.220345 | 1_4:+2788791 | Msa0143740:CDS |
| CCTTAAACTCTTGAATTCTT+TGG | 0.238324 | 1_4:-2787506 | None:intergenic |
| TAAAGAAGCCTGGAATAAAT+TGG | 0.241875 | 1_4:+2784398 | Msa0143740:CDS |
| ATACATGATGCAACTGTAAA+TGG | 0.242921 | 1_4:+2787711 | Msa0143740:CDS |
| TTAGAACGCGCACCAATTTC+AGG | 0.251761 | 1_4:-2784270 | None:intergenic |
| TACATACCTTGCTCAATATC+TGG | 0.253912 | 1_4:-2784453 | None:intergenic |
| CTTCGCTATATTCGTGTTTC+CGG | 0.254247 | 1_4:-2785564 | None:intergenic |
| AATATATTCCACATCCTCTA+TGG | 0.260429 | 1_4:+2785403 | Msa0143740:CDS |
| GTGACCTCTATTCCTGAAAT+TGG | 0.292763 | 1_4:+2784258 | Msa0143740:CDS |
| TGCACTTGGCAGGATATTTA+GGG | 0.308043 | 1_4:+2787784 | Msa0143740:CDS |
| TTTCCAAGTGGTAGTGGATA+TGG | 0.311953 | 1_4:+2785997 | Msa0143740:CDS |
| ACTTCGGTCCTTCTCTTCAT+TGG | 0.319322 | 1_4:+2788651 | Msa0143740:CDS |
| AATTGTATCCATCAGGAATA+AGG | 0.321064 | 1_4:+2787424 | Msa0143740:intron |
| CTTCACGTTGCGGTAGTTGC+TGG | 0.322177 | 1_4:+2785437 | Msa0143740:CDS |
| CTAAGACTGAATATGAGATT+TGG | 0.338368 | 1_4:+2784289 | Msa0143740:CDS |
| AGGGTAATCCTGACCTCTTA+TGG | 0.352153 | 1_4:+2787616 | Msa0143740:CDS |
| CGAGGAAATTGTGAAGAAAT+TGG | 0.372095 | 1_4:+2785463 | Msa0143740:CDS |
| ATGCAAACTCGTTTATTAAG+AGG | 0.378242 | 1_4:+2785369 | Msa0143740:CDS |
| AACAGGGATTTCACCATCAT+TGG | 0.379563 | 1_4:-2785645 | None:intergenic |
| TGTTCTTCTTGCTGCTGCTA+AGG | 0.379583 | 1_4:+2785664 | Msa0143740:CDS |
| TGGTGAAAGCTGGGGAGAAA+TGG | 0.379583 | 1_4:+2788448 | Msa0143740:CDS |
| GATAAGTAATAAGTTTCAAT+TGG | 0.388393 | 1_4:-2788927 | None:intergenic |
| AGTTGCACCCAATTTATTCC+AGG | 0.399506 | 1_4:-2784406 | None:intergenic |
| CACAAGGAGCTGGTGAAAGC+TGG | 0.403742 | 1_4:+2788438 | Msa0143740:intron |
| GCTGCAGCTTTCACTGTCCC+TGG | 0.408383 | 1_4:+2788531 | Msa0143740:CDS |
| TTAGCAGCAGCAAGAAGAAC+AGG | 0.410668 | 1_4:-2785662 | None:intergenic |
| TAGAAACCACAGAGAAGAAA+AGG | 0.416389 | 1_4:-2788749 | None:intergenic |
| TTCCAAGTGGTAGTGGATAT+GGG | 0.416844 | 1_4:+2785998 | Msa0143740:CDS |
| AAATGCCGTGTAGACGCATT+TGG | 0.419337 | 1_4:+2787750 | Msa0143740:CDS |
| AATTCCATGTTGCACTTGGC+AGG | 0.419647 | 1_4:+2787774 | Msa0143740:CDS |
| ATCAGAACTTAGAGAGGCTT+CGG | 0.421195 | 1_4:+2787530 | Msa0143740:CDS |
| GGGTAATCCTGACCTCTTAT+GGG | 0.423361 | 1_4:+2787617 | Msa0143740:CDS |
| CTAATATGAGTAAGATTCTC+TGG | 0.424630 | 1_4:-2784360 | None:intergenic |
| TCACTTGCTATGCTCTTAAA+GGG | 0.427681 | 1_4:+2788792 | Msa0143740:CDS |
| CATTGGTCTTCATAGATAAC+AGG | 0.427879 | 1_4:-2785628 | None:intergenic |
| ACCTTAGTGGCAATGACTTA+AGG | 0.429666 | 1_4:-2788707 | None:intergenic |
| AGATGCAAAGAGAAATTCTA+TGG | 0.430747 | 1_4:+2787847 | Msa0143740:CDS |
| TTCACGTTGCGGTAGTTGCT+GGG | 0.432176 | 1_4:+2785438 | Msa0143740:CDS |
| TCTCTTTGCATCTGCATAGC+AGG | 0.438079 | 1_4:-2787837 | None:intergenic |
| GAGATTTGGAACAGGAAGAA+TGG | 0.441267 | 1_4:+2784303 | Msa0143740:CDS |
| CCACAAATCACACTTTGAAT+CGG | 0.443086 | 1_4:+2785930 | Msa0143740:CDS |
| TCTGTGTTTCCAAGTGGTAG+TGG | 0.443413 | 1_4:+2785991 | Msa0143740:CDS |
| CTGAATATGAGATTTGGAAC+AGG | 0.444534 | 1_4:+2784295 | Msa0143740:CDS |
| GTTCTTCTTGCTGCTGCTAA+GGG | 0.445513 | 1_4:+2785665 | Msa0143740:CDS |
| GACGGAACTAGAACGATAAC+AGG | 0.453839 | 1_4:-2788858 | None:intergenic |
| CGATTCAAAGTGTGATTTGT+GGG | 0.456154 | 1_4:-2785929 | None:intergenic |
| TATAGCGAAGTGTATGACTA+TGG | 0.458675 | 1_4:+2785577 | Msa0143740:CDS |
| TCCTTAAGTCATTGCCACTA+AGG | 0.460081 | 1_4:+2788706 | Msa0143740:CDS |
| TCTTGTGGGACATGGTCTGT+GGG | 0.464135 | 1_4:+2784230 | Msa0143740:CDS |
| TCAATGGCCCATAAGAGGTC+AGG | 0.465739 | 1_4:-2787624 | None:intergenic |
| TTTCAGCGTAACGAGCCGTT+AGG | 0.467061 | 1_4:-2788677 | None:intergenic |
| GTTTATAGATGCAATGAGAA+AGG | 0.467103 | 1_4:+2787596 | Msa0143740:CDS |
| TTGTGGGCAAGAGGCATTTG+AGG | 0.467341 | 1_4:-2785913 | None:intergenic |
| CTTGTTAGAAACTATCTTGT+GGG | 0.467922 | 1_4:+2784216 | None:intergenic |
| ATGCGTGCCAATGCGTATAA+TGG | 0.471182 | 1_4:-2785964 | None:intergenic |
| TGTGCAGCGATTTATATTGA+AGG | 0.474499 | 1_4:-2785319 | None:intergenic |
| TTCATATTGCTAAAGAAGCC+TGG | 0.477292 | 1_4:+2784388 | Msa0143740:CDS |
| AAAGAAGCCTGGAATAAATT+GGG | 0.481257 | 1_4:+2784399 | Msa0143740:CDS |
| ACAAGGAGCTGGTGAAAGCT+GGG | 0.481894 | 1_4:+2788439 | Msa0143740:intron |
| GGTGAAAGCTGGGGAGAAAT+GGG | 0.482292 | 1_4:+2788449 | Msa0143740:CDS |
| AGCTGGTTCATTTACTCTTG+TGG | 0.482801 | 1_4:+2788482 | Msa0143740:CDS |
| AGATTTGGAACAGGAAGAAT+GGG | 0.485550 | 1_4:+2784304 | Msa0143740:CDS |
| TCAGCTCAGCAACAAGAGCT+AGG | 0.486371 | 1_4:-2785541 | None:intergenic |
| CATAGCAAGTGAAGCACAGA+AGG | 0.486804 | 1_4:-2788781 | None:intergenic |
| ATCTTGTGGGACATGGTCTG+TGG | 0.486835 | 1_4:+2784229 | Msa0143740:CDS |
| GTGAAGAAATTGGTGAAGGA+AGG | 0.488215 | 1_4:+2785473 | Msa0143740:CDS |
| TTGCATCTGCATAGCAGGAC+CGG | 0.495069 | 1_4:-2787832 | None:intergenic |
| ATATATTCCACATCCTCTAT+GGG | 0.496055 | 1_4:+2785404 | Msa0143740:CDS |
| TTGTCTTGATTGTTTCCACC+AGG | 0.496117 | 1_4:-2788549 | None:intergenic |
| TTGTACACCGTTGGAAGACC+TGG | 0.502955 | 1_4:+2785718 | Msa0143740:CDS |
| TTTATAGATGCAATGAGAAA+GGG | 0.503030 | 1_4:+2787597 | Msa0143740:CDS |
| ATCATGTATGAGTTCGAAAA+CGG | 0.503307 | 1_4:-2787697 | None:intergenic |
| TGCGATAATTATCATCGGCC+AGG | 0.509460 | 1_4:-2785736 | None:intergenic |
| TGGCAATTCCATGTTGCACT+TGG | 0.511014 | 1_4:+2787770 | Msa0143740:CDS |
| TCTTTACCGTTGTACACCGT+TGG | 0.515694 | 1_4:+2785709 | Msa0143740:CDS |
| TCTGATCTTGATCGTAGATC+CGG | 0.515841 | 1_4:+2787813 | Msa0143740:CDS |
| CGCACCAATTTCAGGAATAG+AGG | 0.521001 | 1_4:-2784262 | None:intergenic |
| GCTCTTGTTGCTGAGCTGAC+CGG | 0.526277 | 1_4:+2785545 | Msa0143740:CDS |
| CCGATTCAAAGTGTGATTTG+TGG | 0.526820 | 1_4:-2785930 | None:intergenic |
| TGCAAACTCGTTTATTAAGA+GGG | 0.527286 | 1_4:+2785370 | Msa0143740:CDS |
| TGTGATGTCGTGCAAGAACA+AGG | 0.535047 | 1_4:-2788580 | None:intergenic |
| GAGGCATTTGAGGAAATCGT+TGG | 0.537554 | 1_4:-2785903 | None:intergenic |
| GGTCCTCCCCATAGAGGATG+TGG | 0.539677 | 1_4:-2785411 | None:intergenic |
| AAGAGAAATTCTATGGTTCA+AGG | 0.541072 | 1_4:+2787854 | Msa0143740:CDS |
| TGTGCAACCATTATACGCAT+TGG | 0.543058 | 1_4:+2785957 | Msa0143740:CDS |
| AGTGCGAAAAGTAACCTTAG+TGG | 0.548121 | 1_4:-2788720 | None:intergenic |
| ATGTTGCAAGCAGCAAAGCA+TGG | 0.548691 | 1_4:+2787564 | Msa0143740:CDS |
| AACCCATATCCACTACCACT+TGG | 0.557493 | 1_4:-2786000 | None:intergenic |
| AAGTGTGATTTGTGGGCAAG+AGG | 0.558162 | 1_4:-2785922 | None:intergenic |
| TCTTGTTAGAAACTATCTTG+TGG | 0.559427 | 1_4:+2784215 | None:intergenic |
| AGAAACTATCTTGTGGGACA+TGG | 0.562860 | 1_4:+2784222 | None:intergenic |
| AGAAACCACAGAGAAGAAAA+GGG | 0.563826 | 1_4:-2788748 | None:intergenic |
| TGTTGCAAGCAGCAAAGCAT+GGG | 0.564523 | 1_4:+2787565 | Msa0143740:CDS |
| GCTTTAATTTGCAGGTGTGG+TGG | 0.564757 | 1_4:+2785286 | Msa0143740:intron |
| ACTTGAAAATCTCAAGGAAG+AGG | 0.567742 | 1_4:-2788890 | None:intergenic |
| TAAGGAATCAGAACTTAGAG+AGG | 0.568613 | 1_4:+2787524 | Msa0143740:CDS |
| GCCGATGATAATTATCGCAA+TGG | 0.574637 | 1_4:+2785740 | Msa0143740:CDS |
| TGAAGAAATTGGTGAAGGAA+GGG | 0.574748 | 1_4:+2785474 | Msa0143740:CDS |
| CAGCTCAGCAACAAGAGCTA+GGG | 0.580236 | 1_4:-2785540 | None:intergenic |
| AAATGGGCAAAAGATACAGC+TGG | 0.580445 | 1_4:+2788465 | Msa0143740:CDS |
| TTATCTATGAAGACCAATGA+TGG | 0.582929 | 1_4:+2785632 | Msa0143740:CDS |
| ACCTTGCTCAATATCTGGAT+CGG | 0.583770 | 1_4:-2784448 | None:intergenic |
| TAAGAAAATATCACGGTCAG+AGG | 0.584733 | 1_4:+2785604 | Msa0143740:CDS |
| TGCGGTAGTTGCTGGGCACG+AGG | 0.589759 | 1_4:+2785445 | Msa0143740:CDS |
| TCTCTTCATTGGAATCCTAA+CGG | 0.591072 | 1_4:+2788662 | Msa0143740:CDS |
| CTGTAGACTTGAAAATCTCA+AGG | 0.594097 | 1_4:-2788896 | None:intergenic |
| GCAGCTTTCACTGTCCCTGG+TGG | 0.601445 | 1_4:+2788534 | Msa0143740:CDS |
| AGGAAGAGGCGCAATTGTGA+CGG | 0.607133 | 1_4:-2788876 | None:intergenic |
| AGTATATTGAGAGCGGTGAG+TGG | 0.609550 | 1_4:+2785342 | Msa0143740:CDS |
| ACCATTGCGATAATTATCAT+CGG | 0.609954 | 1_4:-2785741 | None:intergenic |
| TAGAACGATAACAGGAACAC+TGG | 0.611619 | 1_4:-2788850 | None:intergenic |
| AACTACCGCAACGTGAAGAA+CGG | 0.612033 | 1_4:-2785432 | None:intergenic |
| AATTGCCAAATGCGTCTACA+CGG | 0.612652 | 1_4:-2787755 | None:intergenic |
| TTAGGATTCCAATGAAGAGA+AGG | 0.614556 | 1_4:-2788659 | None:intergenic |
| ATGCCTTCTGTGTTTCCAAG+TGG | 0.615562 | 1_4:+2785985 | Msa0143740:CDS |
| TGCAACTGTAAATGGACGGA+AGG | 0.618113 | 1_4:+2787719 | Msa0143740:CDS |
| CTTGTGGGACATGGTCTGTG+GGG | 0.619674 | 1_4:+2784231 | Msa0143740:CDS |
| CTACCACTTGGAAACACAGA+AGG | 0.622603 | 1_4:-2785988 | None:intergenic |
| AAGAACGGTCCTCCCCATAG+AGG | 0.622685 | 1_4:-2785417 | None:intergenic |
| GCCGATCCAGATATTGAGCA+AGG | 0.624425 | 1_4:+2784447 | Msa0143740:CDS |
| AATTGTGAAGAAATTGGTGA+AGG | 0.625256 | 1_4:+2785469 | Msa0143740:CDS |
| ATATCCTGCCAAGTGCAACA+TGG | 0.627952 | 1_4:-2787778 | None:intergenic |
| GGTGGAAACAATCAAGACAA+TGG | 0.629811 | 1_4:+2788552 | Msa0143740:CDS |
| ATGATGCAACTGTAAATGGA+CGG | 0.638038 | 1_4:+2787715 | Msa0143740:CDS |
| CATATCATTCAACTAACATG+TGG | 0.643061 | 1_4:+2784336 | Msa0143740:CDS |
| CAAGGAGCTGGTGAAAGCTG+GGG | 0.651622 | 1_4:+2788440 | Msa0143740:intron |
| TGTCTTGATTGTTTCCACCA+GGG | 0.652150 | 1_4:-2788548 | None:intergenic |
| GAGGACCGTTCTTCACGTTG+CGG | 0.655029 | 1_4:+2785427 | Msa0143740:CDS |
| GTGATGTCGTGCAAGAACAA+GGG | 0.659099 | 1_4:-2788579 | None:intergenic |
| ATTCCACATCCTCTATGGGG+AGG | 0.660094 | 1_4:+2785408 | Msa0143740:CDS |
| TAGCAGCAGCAAGAAGAACA+GGG | 0.665135 | 1_4:-2785661 | None:intergenic |
| TTGGAACAGGAAGAATGGGA+AGG | 0.668429 | 1_4:+2784308 | Msa0143740:CDS |
| TATTTCAAGAGCTACACGGT+AGG | 0.669157 | 1_4:-2787469 | None:intergenic |
| GTGAAAATGAAAGACAATCG+AGG | 0.669964 | 1_4:+2785509 | Msa0143740:CDS |
| TCATCGGCCAGGTCTTCCAA+CGG | 0.671668 | 1_4:-2785725 | None:intergenic |
| TGGTATATAAGAAAATATCA+CGG | 0.677081 | 1_4:+2785597 | Msa0143740:CDS |
| CTACGATCAAGATCAGAGGA+AGG | 0.678354 | 1_4:-2787807 | None:intergenic |
| CTGCACAAGTATATTGAGAG+CGG | 0.680709 | 1_4:+2785335 | Msa0143740:CDS |
| GGATCTACGATCAAGATCAG+AGG | 0.680818 | 1_4:-2787811 | None:intergenic |
| TCAATATTTCAAGAGCTACA+CGG | 0.684421 | 1_4:-2787473 | None:intergenic |
| GGTCTTCCAACGGTGTACAA+CGG | 0.687225 | 1_4:-2785715 | None:intergenic |
| TATATTCCACATCCTCTATG+GGG | 0.688060 | 1_4:+2785405 | Msa0143740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAAATACTTATAATATT+AGG | + | chr1_4:2785200-2785219 | Msa0143740:intron | 10.0% |
| !! | CTTAAATACTTATAATATTA+GGG | + | chr1_4:2785201-2785220 | Msa0143740:intron | 10.0% |
| !! | ACTTTATAAAAGAAATTTAA+AGG | + | chr1_4:2786252-2786271 | Msa0143740:intron | 10.0% |
| !! | TTATTAAACAGTAAAAGTTT+AGG | + | chr1_4:2785044-2785063 | Msa0143740:intron | 15.0% |
| !!! | ATTCAAATGTACTTATTTTT+GGG | - | chr1_4:2785137-2785156 | None:intergenic | 15.0% |
| !!! | TATTCAAATGTACTTATTTT+TGG | - | chr1_4:2785138-2785157 | None:intergenic | 15.0% |
| !! | ATTTAAAGGTGATTTATAAA+AGG | + | chr1_4:2786266-2786285 | Msa0143740:intron | 15.0% |
| !! | TTTAAAGGTGATTTATAAAA+GGG | + | chr1_4:2786267-2786286 | Msa0143740:intron | 15.0% |
| !!! | CAAAAGTTTGTATTTTATAA+AGG | - | chr1_4:2786309-2786328 | None:intergenic | 15.0% |
| !! | TACTTCCAATAATATATTAA+AGG | + | chr1_4:2786385-2786404 | Msa0143740:intron | 15.0% |
| !! | AAACTCCTTTAATATATTAT+TGG | - | chr1_4:2786393-2786412 | None:intergenic | 15.0% |
| !! | TAATTAATTAATCACAAAGA+GGG | - | chr1_4:2787385-2787404 | None:intergenic | 15.0% |
| !! | TTAATTAATTAATCACAAAG+AGG | - | chr1_4:2787386-2787405 | None:intergenic | 15.0% |
| !!! | AAAAACTAAATTTGAAATTC+TGG | + | chr1_4:2788143-2788162 | Msa0143740:intron | 15.0% |
| !! | TACACATTAATCTATTCTTT+GGG | + | chr1_4:2784488-2784507 | Msa0143740:intron | 20.0% |
| !! | AACTATGTCTAATATGTATA+GGG | - | chr1_4:2784530-2784549 | None:intergenic | 20.0% |
| !! | AAACTATGTCTAATATGTAT+AGG | - | chr1_4:2784531-2784550 | None:intergenic | 20.0% |
| !!! | AATTCATATGTTTGATTTCA+TGG | + | chr1_4:2784717-2784736 | Msa0143740:intron | 20.0% |
| !!! | ATTCATATGTTTGATTTCAT+GGG | + | chr1_4:2784718-2784737 | Msa0143740:intron | 20.0% |
| !!! | ACACTTTATTTATTATGAAG+TGG | - | chr1_4:2784788-2784807 | None:intergenic | 20.0% |
| !!! | TTTGAATATTGTGATTTTAG+TGG | + | chr1_4:2785150-2785169 | Msa0143740:intron | 20.0% |
| !!! | TTGAATATTGTGATTTTAGT+GGG | + | chr1_4:2785151-2785170 | Msa0143740:intron | 20.0% |
| !!! | CATTTATTTTCCTTACTAAT+TGG | - | chr1_4:2785228-2785247 | None:intergenic | 20.0% |
| !! | CAATTAGTAAGGAAAATAAA+TGG | + | chr1_4:2785226-2785245 | Msa0143740:intron | 20.0% |
| !! | TGGTATATAAGAAAATATCA+CGG | + | chr1_4:2785597-2785616 | Msa0143740:CDS | 20.0% |
| !!! | TTTTACGCATATTTTTTTTC+AGG | + | chr1_4:2787217-2787236 | Msa0143740:intron | 20.0% |
| !!! | TTGTTAATCCTTGTTTAAAT+CGG | + | chr1_4:2787307-2787326 | Msa0143740:intron | 20.0% |
| !! | AATTAATTAATCACAAAGAG+GGG | - | chr1_4:2787384-2787403 | None:intergenic | 20.0% |
| !!! | TCAAATTTAGTTTTTGAAGT+TGG | - | chr1_4:2788138-2788157 | None:intergenic | 20.0% |
| !! | ATACATGACATTTAAATAAG+TGG | + | chr1_4:2788206-2788225 | Msa0143740:intron | 20.0% |
| !! | ATGAATAAGATAATAATGTG+TGG | - | chr1_4:2788264-2788283 | None:intergenic | 20.0% |
| !! | GATAAGTAATAAGTTTCAAT+TGG | - | chr1_4:2788930-2788949 | None:intergenic | 20.0% |
| ! | GTACACATTAATCTATTCTT+TGG | + | chr1_4:2784487-2784506 | Msa0143740:intron | 25.0% |
| ! | TAGTTTCTAAATGTAGTGAA+AGG | + | chr1_4:2784545-2784564 | Msa0143740:intron | 25.0% |
| !! | CAATGAGGAAAGATTTTTAA+AGG | + | chr1_4:2784939-2784958 | Msa0143740:intron | 25.0% |
| ! | AGCTAATGTTTATTAGCAAT+AGG | + | chr1_4:2784966-2784985 | Msa0143740:intron | 25.0% |
| ! | ATGTTTATTAGCAATAGGTA+AGG | + | chr1_4:2784971-2784990 | Msa0143740:intron | 25.0% |
| ! | TGTTTATTAGCAATAGGTAA+GGG | + | chr1_4:2784972-2784991 | Msa0143740:intron | 25.0% |
| ! | TCGATTCAATATTGTATCTT+AGG | + | chr1_4:2785862-2785881 | Msa0143740:intron | 25.0% |
| ! | AATTTGAAAAGTAAGCGAAA+TGG | - | chr1_4:2786083-2786102 | None:intergenic | 25.0% |
| !!! | ATTTCGCTTACTTTTCAAAT+TGG | + | chr1_4:2786082-2786101 | Msa0143740:intron | 25.0% |
| !!! | TTTCGCTTACTTTTCAAATT+GGG | + | chr1_4:2786083-2786102 | Msa0143740:intron | 25.0% |
| ! | TGCAAACTTATAATGTTACA+CGG | + | chr1_4:2786142-2786161 | Msa0143740:intron | 25.0% |
| !! | TTGTATTTTATAAAGGACAC+TGG | - | chr1_4:2786302-2786321 | None:intergenic | 25.0% |
| ! | AATGAATACTATATGTGTAG+TGG | - | chr1_4:2786355-2786374 | None:intergenic | 25.0% |
| ! | GAGTAAATAATGAATGAGAT+TGG | + | chr1_4:2786617-2786636 | Msa0143740:intron | 25.0% |
| ! | ATGAACACACATATATAACA+GGG | - | chr1_4:2787185-2787204 | None:intergenic | 25.0% |
| ! | TATGAACACACATATATAAC+AGG | - | chr1_4:2787186-2787205 | None:intergenic | 25.0% |
| !!! | CTAATATACCGATTTAAACA+AGG | - | chr1_4:2787318-2787337 | None:intergenic | 25.0% |
| ! | GAATGATTGTACTTACAATA+AGG | - | chr1_4:2787359-2787378 | None:intergenic | 25.0% |
| !! | TATATTTTCCTTATTCCTGA+TGG | - | chr1_4:2787435-2787454 | None:intergenic | 25.0% |
| ! | TTTATAGATGCAATGAGAAA+GGG | + | chr1_4:2787597-2787616 | Msa0143740:CDS | 25.0% |
| ! | GCCATTGATAAAAATAAAAG+AGG | + | chr1_4:2787639-2787658 | Msa0143740:CDS | 25.0% |
| !!! | GCCTCTTTTATTTTTATCAA+TGG | - | chr1_4:2787643-2787662 | None:intergenic | 25.0% |
| ! | AATGTCATGTATCTCAAAAT+TGG | - | chr1_4:2788198-2788217 | None:intergenic | 25.0% |
| !! | CATATTGTGAAATTTTGTGA+AGG | + | chr1_4:2788332-2788351 | Msa0143740:intron | 25.0% |
| CTAAGACTGAATATGAGATT+TGG | + | chr1_4:2784289-2784308 | Msa0143740:CDS | 30.0% | |
| CATATCATTCAACTAACATG+TGG | + | chr1_4:2784336-2784355 | Msa0143740:CDS | 30.0% | |
| CTAATATGAGTAAGATTCTC+TGG | - | chr1_4:2784363-2784382 | None:intergenic | 30.0% | |
| TAAAGAAGCCTGGAATAAAT+TGG | + | chr1_4:2784398-2784417 | Msa0143740:CDS | 30.0% | |
| AAAGAAGCCTGGAATAAATT+GGG | + | chr1_4:2784399-2784418 | Msa0143740:CDS | 30.0% | |
| ATAAATAAAGTGTGTGAGTG+AGG | + | chr1_4:2784795-2784814 | Msa0143740:intron | 30.0% | |
| GTTGTATGAGATGTTACAAA+TGG | + | chr1_4:2784874-2784893 | Msa0143740:intron | 30.0% | |
| ! | TGAGATGTTACAAATGGTTT+TGG | + | chr1_4:2784880-2784899 | Msa0143740:intron | 30.0% |
| !! | TGAGGAAAGATTTTTAAAGG+AGG | + | chr1_4:2784942-2784961 | Msa0143740:intron | 30.0% |
| TAGTTACAACGCTTAAGATT+GGG | - | chr1_4:2785072-2785091 | None:intergenic | 30.0% | |
| TTAGTTACAACGCTTAAGAT+TGG | - | chr1_4:2785073-2785092 | None:intergenic | 30.0% | |
| TTGTAACTAAGAACAACCAA+CGG | + | chr1_4:2785083-2785102 | Msa0143740:intron | 30.0% | |
| ATATTAGGGTCCAATTAGTA+AGG | + | chr1_4:2785215-2785234 | Msa0143740:intron | 30.0% | |
| !! | ACATACATGCTTTAATTTGC+AGG | + | chr1_4:2785278-2785297 | Msa0143740:intron | 30.0% |
| ATGCAAACTCGTTTATTAAG+AGG | + | chr1_4:2785369-2785388 | Msa0143740:CDS | 30.0% | |
| TGCAAACTCGTTTATTAAGA+GGG | + | chr1_4:2785370-2785389 | Msa0143740:CDS | 30.0% | |
| AATATATTCCACATCCTCTA+TGG | + | chr1_4:2785403-2785422 | Msa0143740:CDS | 30.0% | |
| ATATATTCCACATCCTCTAT+GGG | + | chr1_4:2785404-2785423 | Msa0143740:CDS | 30.0% | |
| AATTGTGAAGAAATTGGTGA+AGG | + | chr1_4:2785469-2785488 | Msa0143740:CDS | 30.0% | |
| TTATCTATGAAGACCAATGA+TGG | + | chr1_4:2785632-2785651 | Msa0143740:CDS | 30.0% | |
| ACCATTGCGATAATTATCAT+CGG | - | chr1_4:2785744-2785763 | None:intergenic | 30.0% | |
| TGTATCACTGCAGAAATATT+TGG | + | chr1_4:2785782-2785801 | Msa0143740:intron | 30.0% | |
| ATCGACATCAAACACTAATA+TGG | - | chr1_4:2785847-2785866 | None:intergenic | 30.0% | |
| TCAATATTGTATCTTAGGTG+TGG | + | chr1_4:2785867-2785886 | Msa0143740:intron | 30.0% | |
| TTGGGTCATCTTAAAATTCT+CGG | + | chr1_4:2786101-2786120 | Msa0143740:intron | 30.0% | |
| GGAGATGTTAAATTAAGTGT+TGG | - | chr1_4:2786334-2786353 | None:intergenic | 30.0% | |
| ! | AGAGTTTTACATGATCTGTT+TGG | + | chr1_4:2786426-2786445 | Msa0143740:intron | 30.0% |
| TACATGATCTGTTTGGAAAT+TGG | + | chr1_4:2786433-2786452 | Msa0143740:intron | 30.0% | |
| ! | AGTGAAGTTTGATGAGTTTT+TGG | - | chr1_4:2786506-2786525 | None:intergenic | 30.0% |
| AGACCAACTTTACAAAATTG+AGG | + | chr1_4:2786549-2786568 | Msa0143740:intron | 30.0% | |
| ! | ACTCCTCAATTTTGTAAAGT+TGG | - | chr1_4:2786555-2786574 | None:intergenic | 30.0% |
| !! | GAGTATCGTTCCAATTTTAT+CGG | + | chr1_4:2786571-2786590 | Msa0143740:intron | 30.0% |
| GGTAATCTCAAAACTAAAAG+CGG | - | chr1_4:2786726-2786745 | None:intergenic | 30.0% | |
| !! | AGAGAAGTGCATGAATTTTA+CGG | + | chr1_4:2786750-2786769 | Msa0143740:intron | 30.0% |
| !!! | TTTGTGTTGTTTTTCCTCTT+TGG | - | chr1_4:2786802-2786821 | None:intergenic | 30.0% |
| !! | AAGCTCTAGAAAGAAGAATT+AGG | - | chr1_4:2786855-2786874 | None:intergenic | 30.0% |
| ! | GTTTTTCTACAATATGCGAA+TGG | + | chr1_4:2786894-2786913 | Msa0143740:intron | 30.0% |
| CTGAGGATTATTAATCTTCT+CGG | + | chr1_4:2786922-2786941 | Msa0143740:intron | 30.0% | |
| ! | TCACATGTCATTTCAGAATT+CGG | + | chr1_4:2787258-2787277 | Msa0143740:intron | 30.0% |
| ! | TTATTCCTGATGGATACAAT+TGG | - | chr1_4:2787425-2787444 | None:intergenic | 30.0% |
| AATTGTATCCATCAGGAATA+AGG | + | chr1_4:2787424-2787443 | Msa0143740:intron | 30.0% | |
| TCAATATTTCAAGAGCTACA+CGG | - | chr1_4:2787476-2787495 | None:intergenic | 30.0% | |
| CCTTAAACTCTTGAATTCTT+TGG | - | chr1_4:2787509-2787528 | None:intergenic | 30.0% | |
| CCAAAGAATTCAAGAGTTTA+AGG | + | chr1_4:2787506-2787525 | Msa0143740:CDS | 30.0% | |
| GTTTATAGATGCAATGAGAA+AGG | + | chr1_4:2787596-2787615 | Msa0143740:CDS | 30.0% | |
| ATCATGTATGAGTTCGAAAA+CGG | - | chr1_4:2787700-2787719 | None:intergenic | 30.0% | |
| ATACATGATGCAACTGTAAA+TGG | + | chr1_4:2787711-2787730 | Msa0143740:CDS | 30.0% | |
| AGATGCAAAGAGAAATTCTA+TGG | + | chr1_4:2787847-2787866 | Msa0143740:CDS | 30.0% | |
| AAGAGAAATTCTATGGTTCA+AGG | + | chr1_4:2787854-2787873 | Msa0143740:CDS | 30.0% | |
| TTTCACAATATGTTATAGCG+CGG | - | chr1_4:2788324-2788343 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCTTCCTTACACTT+GGG | - | chr1_4:2788378-2788397 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCTTCCTTACACT+TGG | - | chr1_4:2788379-2788398 | None:intergenic | 30.0% |
| ! | TCTTTTCACTTCTTCAACTT+CGG | + | chr1_4:2788635-2788654 | Msa0143740:CDS | 30.0% |
| ! | CTGAATATGAGATTTGGAAC+AGG | + | chr1_4:2784295-2784314 | Msa0143740:CDS | 35.0% |
| ! | AGATTTGGAACAGGAAGAAT+GGG | + | chr1_4:2784304-2784323 | Msa0143740:CDS | 35.0% |
| TTCATATTGCTAAAGAAGCC+TGG | + | chr1_4:2784388-2784407 | Msa0143740:CDS | 35.0% | |
| TACATACCTTGCTCAATATC+TGG | - | chr1_4:2784456-2784475 | None:intergenic | 35.0% | |
| ! | TAAGTGTCTTTTGTGAGTCA+TGG | + | chr1_4:2784581-2784600 | Msa0143740:intron | 35.0% |
| ATTAAGTCCTGTCTCATAGT+CGG | - | chr1_4:2784613-2784632 | None:intergenic | 35.0% | |
| !! | AAAAGAATTGTGTTGACTCG+TGG | + | chr1_4:2784831-2784850 | Msa0143740:intron | 35.0% |
| !! | AAAGAATTGTGTTGACTCGT+GGG | + | chr1_4:2784832-2784851 | Msa0143740:intron | 35.0% |
| AGTTACAACGCTTAAGATTG+GGG | - | chr1_4:2785071-2785090 | None:intergenic | 35.0% | |
| TGTGCAGCGATTTATATTGA+AGG | - | chr1_4:2785322-2785341 | None:intergenic | 35.0% | |
| TATATTCCACATCCTCTATG+GGG | + | chr1_4:2785405-2785424 | Msa0143740:CDS | 35.0% | |
| CGAGGAAATTGTGAAGAAAT+TGG | + | chr1_4:2785463-2785482 | Msa0143740:CDS | 35.0% | |
| TGAAGAAATTGGTGAAGGAA+GGG | + | chr1_4:2785474-2785493 | Msa0143740:CDS | 35.0% | |
| GTGAAAATGAAAGACAATCG+AGG | + | chr1_4:2785509-2785528 | Msa0143740:CDS | 35.0% | |
| TATAGCGAAGTGTATGACTA+TGG | + | chr1_4:2785577-2785596 | Msa0143740:CDS | 35.0% | |
| TAAGAAAATATCACGGTCAG+AGG | + | chr1_4:2785604-2785623 | Msa0143740:CDS | 35.0% | |
| !! | CATTGGTCTTCATAGATAAC+AGG | - | chr1_4:2785631-2785650 | None:intergenic | 35.0% |
| ! | CGATTCAAAGTGTGATTTGT+GGG | - | chr1_4:2785932-2785951 | None:intergenic | 35.0% |
| CCACAAATCACACTTTGAAT+CGG | + | chr1_4:2785930-2785949 | Msa0143740:CDS | 35.0% | |
| AATTCATGCACTTCTCTTTC+AGG | - | chr1_4:2786747-2786766 | None:intergenic | 35.0% | |
| !! | GAGAAGTGCATGAATTTTAC+GGG | + | chr1_4:2786751-2786770 | Msa0143740:intron | 35.0% |
| TCTTGCAAATATTGCCAAAG+AGG | + | chr1_4:2786785-2786804 | Msa0143740:intron | 35.0% | |
| !! | ATCTTCTCGGTTGTTTCTTT+AGG | + | chr1_4:2786935-2786954 | Msa0143740:intron | 35.0% |
| ! | GTTTCTTTAGGAAGGTTATG+TGG | + | chr1_4:2786947-2786966 | Msa0143740:intron | 35.0% |
| AAGATCACAGATCACAACAA+GGG | - | chr1_4:2787087-2787106 | None:intergenic | 35.0% | |
| AAAGATCACAGATCACAACA+AGG | - | chr1_4:2787088-2787107 | None:intergenic | 35.0% | |
| TCGGTACTATTAAAGTTCTC+TGG | + | chr1_4:2787277-2787296 | Msa0143740:intron | 35.0% | |
| TAATTAATCACAAAGAGGGG+AGG | - | chr1_4:2787381-2787400 | None:intergenic | 35.0% | |
| TAAGGAATCAGAACTTAGAG+AGG | + | chr1_4:2787524-2787543 | Msa0143740:CDS | 35.0% | |
| ! | TTTTATCAATGGCCCATAAG+AGG | - | chr1_4:2787632-2787651 | None:intergenic | 35.0% |
| ATGATGCAACTGTAAATGGA+CGG | + | chr1_4:2787715-2787734 | Msa0143740:CDS | 35.0% | |
| GCTTATATGTTGGAACAAAG+AGG | + | chr1_4:2787933-2787952 | Msa0143740:intron | 35.0% | |
| GAGAAGAGATTAGAGAGTTT+AGG | + | chr1_4:2787994-2788013 | Msa0143740:intron | 35.0% | |
| GTTGGTTGTGAAGTTGTTAT+AGG | - | chr1_4:2788120-2788139 | None:intergenic | 35.0% | |
| TATAGCGCGGTTAAAATTCA+TGG | - | chr1_4:2788311-2788330 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCCTTACACTTG+GGG | - | chr1_4:2788377-2788396 | None:intergenic | 35.0% |
| TTAGGATTCCAATGAAGAGA+AGG | - | chr1_4:2788662-2788681 | None:intergenic | 35.0% | |
| TCTCTTCATTGGAATCCTAA+CGG | + | chr1_4:2788662-2788681 | Msa0143740:CDS | 35.0% | |
| AGAAACCACAGAGAAGAAAA+GGG | - | chr1_4:2788751-2788770 | None:intergenic | 35.0% | |
| TAGAAACCACAGAGAAGAAA+AGG | - | chr1_4:2788752-2788771 | None:intergenic | 35.0% | |
| !! | TTCACTTGCTATGCTCTTAA+AGG | + | chr1_4:2788791-2788810 | Msa0143740:CDS | 35.0% |
| !! | TCACTTGCTATGCTCTTAAA+GGG | + | chr1_4:2788792-2788811 | Msa0143740:CDS | 35.0% |
| ACTTGAAAATCTCAAGGAAG+AGG | - | chr1_4:2788893-2788912 | None:intergenic | 35.0% | |
| CTGTAGACTTGAAAATCTCA+AGG | - | chr1_4:2788899-2788918 | None:intergenic | 35.0% | |
| GTGACCTCTATTCCTGAAAT+TGG | + | chr1_4:2784258-2784277 | Msa0143740:CDS | 40.0% | |
| ! | GAGATTTGGAACAGGAAGAA+TGG | + | chr1_4:2784303-2784322 | Msa0143740:CDS | 40.0% |
| AGTTGCACCCAATTTATTCC+AGG | - | chr1_4:2784409-2784428 | None:intergenic | 40.0% | |
| ACCTTGCTCAATATCTGGAT+CGG | - | chr1_4:2784451-2784470 | None:intergenic | 40.0% | |
| !! | AAGAATTGTGTTGACTCGTG+GGG | + | chr1_4:2784833-2784852 | Msa0143740:intron | 40.0% |
| TAGGTAAGGGAGAAGCAATA+AGG | + | chr1_4:2784985-2785004 | Msa0143740:intron | 40.0% | |
| AAGAACAACCAACGGCATTT+AGG | + | chr1_4:2785091-2785110 | Msa0143740:intron | 40.0% | |
| !! | CATGCTTTAATTTGCAGGTG+TGG | + | chr1_4:2785283-2785302 | Msa0143740:intron | 40.0% |
| CTGCACAAGTATATTGAGAG+CGG | + | chr1_4:2785335-2785354 | Msa0143740:CDS | 40.0% | |
| GTGAAGAAATTGGTGAAGGA+AGG | + | chr1_4:2785473-2785492 | Msa0143740:CDS | 40.0% | |
| CTTCGCTATATTCGTGTTTC+CGG | - | chr1_4:2785567-2785586 | None:intergenic | 40.0% | |
| AACAGGGATTTCACCATCAT+TGG | - | chr1_4:2785648-2785667 | None:intergenic | 40.0% | |
| GCCGATGATAATTATCGCAA+TGG | + | chr1_4:2785740-2785759 | Msa0143740:CDS | 40.0% | |
| ! | CTGCAGAAATATTTGGTTCG+TGG | + | chr1_4:2785789-2785808 | Msa0143740:intron | 40.0% |
| CCGATTCAAAGTGTGATTTG+TGG | - | chr1_4:2785933-2785952 | None:intergenic | 40.0% | |
| TGTGCAACCATTATACGCAT+TGG | + | chr1_4:2785957-2785976 | Msa0143740:CDS | 40.0% | |
| !! | TTTCCAAGTGGTAGTGGATA+TGG | + | chr1_4:2785997-2786016 | Msa0143740:CDS | 40.0% |
| !! | TTCCAAGTGGTAGTGGATAT+GGG | + | chr1_4:2785998-2786017 | Msa0143740:CDS | 40.0% |
| TTCTCGGTAGTGAAATAGCT+AGG | + | chr1_4:2786117-2786136 | Msa0143740:intron | 40.0% | |
| TTACTCCTCAATTGTCCCTT+CGG | - | chr1_4:2786603-2786622 | None:intergenic | 40.0% | |
| !! | AAGCGGAAGTAGATTAGTCT+TGG | - | chr1_4:2786709-2786728 | None:intergenic | 40.0% |
| CAACACAAAGCTTCTTTCGT+AGG | + | chr1_4:2786813-2786832 | Msa0143740:intron | 40.0% | |
| CAAAGCTTCTTTCGTAGGTA+TGG | + | chr1_4:2786818-2786837 | Msa0143740:intron | 40.0% | |
| !! | TCTCGGTTGTTTCTTTAGGA+AGG | + | chr1_4:2786939-2786958 | Msa0143740:intron | 40.0% |
| ! | CTTTAGGAAGGTTATGTGGA+CGG | + | chr1_4:2786951-2786970 | Msa0143740:intron | 40.0% |
| TTTATCGCCAGTAAAGCAGT+TGG | + | chr1_4:2786982-2787001 | Msa0143740:intron | 40.0% | |
| TTATCGCCAGTAAAGCAGTT+GGG | + | chr1_4:2786983-2787002 | Msa0143740:intron | 40.0% | |
| AACTTACCCAACTGCTTTAC+TGG | - | chr1_4:2786992-2787011 | None:intergenic | 40.0% | |
| TCTGGATTACAAGACGTATC+CGG | - | chr1_4:2787135-2787154 | None:intergenic | 40.0% | |
| TCTTGTAATCCAGACCCTAA+GGG | + | chr1_4:2787141-2787160 | Msa0143740:intron | 40.0% | |
| GCTTTGTATTCACACCCTTA+GGG | - | chr1_4:2787158-2787177 | None:intergenic | 40.0% | |
| CACACATATATAACAGGGAC+TGG | - | chr1_4:2787180-2787199 | None:intergenic | 40.0% | |
| ! | TCCTGATGGATACAATTGGA+GGG | - | chr1_4:2787421-2787440 | None:intergenic | 40.0% |
| ! | TTCCTGATGGATACAATTGG+AGG | - | chr1_4:2787422-2787441 | None:intergenic | 40.0% |
| TATTTCAAGAGCTACACGGT+AGG | - | chr1_4:2787472-2787491 | None:intergenic | 40.0% | |
| ATCAGAACTTAGAGAGGCTT+CGG | + | chr1_4:2787530-2787549 | Msa0143740:CDS | 40.0% | |
| ! | GTTCGAAAACGGCTTTTCTA+CGG | - | chr1_4:2787689-2787708 | None:intergenic | 40.0% |
| AATTGCCAAATGCGTCTACA+CGG | - | chr1_4:2787758-2787777 | None:intergenic | 40.0% | |
| TTGCACTTGGCAGGATATTT+AGG | + | chr1_4:2787783-2787802 | Msa0143740:CDS | 40.0% | |
| TGCACTTGGCAGGATATTTA+GGG | + | chr1_4:2787784-2787803 | Msa0143740:CDS | 40.0% | |
| TCTGATCTTGATCGTAGATC+CGG | + | chr1_4:2787813-2787832 | Msa0143740:CDS | 40.0% | |
| ! | GTGAAATTTTGTGAAGGCAG+TGG | + | chr1_4:2788338-2788357 | Msa0143740:intron | 40.0% |
| ! | AAATTTTGTGAAGGCAGTGG+AGG | + | chr1_4:2788341-2788360 | Msa0143740:intron | 40.0% |
| CTTTCTGTAAATAGCTCACG+AGG | - | chr1_4:2788417-2788436 | None:intergenic | 40.0% | |
| GCTATTTACAGAAAGCCACA+AGG | + | chr1_4:2788422-2788441 | Msa0143740:intron | 40.0% | |
| AAATGGGCAAAAGATACAGC+TGG | + | chr1_4:2788465-2788484 | Msa0143740:CDS | 40.0% | |
| ! | AGCTGGTTCATTTACTCTTG+TGG | + | chr1_4:2788482-2788501 | Msa0143740:CDS | 40.0% |
| TGTCTTGATTGTTTCCACCA+GGG | - | chr1_4:2788551-2788570 | None:intergenic | 40.0% | |
| TTGTCTTGATTGTTTCCACC+AGG | - | chr1_4:2788552-2788571 | None:intergenic | 40.0% | |
| GGTGGAAACAATCAAGACAA+TGG | + | chr1_4:2788552-2788571 | Msa0143740:CDS | 40.0% | |
| TCCTTAAGTCATTGCCACTA+AGG | + | chr1_4:2788706-2788725 | Msa0143740:CDS | 40.0% | |
| ACCTTAGTGGCAATGACTTA+AGG | - | chr1_4:2788710-2788729 | None:intergenic | 40.0% | |
| AGTGCGAAAAGTAACCTTAG+TGG | - | chr1_4:2788723-2788742 | None:intergenic | 40.0% | |
| TAGAACGATAACAGGAACAC+TGG | - | chr1_4:2788853-2788872 | None:intergenic | 40.0% | |
| CGCACCAATTTCAGGAATAG+AGG | - | chr1_4:2784265-2784284 | None:intergenic | 45.0% | |
| TTAGAACGCGCACCAATTTC+AGG | - | chr1_4:2784273-2784292 | None:intergenic | 45.0% | |
| TTGGAACAGGAAGAATGGGA+AGG | + | chr1_4:2784308-2784327 | Msa0143740:CDS | 45.0% | |
| GACTAAACCGACTATGAGAC+AGG | + | chr1_4:2784603-2784622 | Msa0143740:intron | 45.0% | |
| !! | AGAATTGTGTTGACTCGTGG+GGG | + | chr1_4:2784834-2784853 | Msa0143740:intron | 45.0% |
| AACCAACGGCATTTAGGCTT+TGG | + | chr1_4:2785097-2785116 | Msa0143740:intron | 45.0% | |
| ACCAACGGCATTTAGGCTTT+GGG | + | chr1_4:2785098-2785117 | Msa0143740:intron | 45.0% | |
| !! | GCTTTAATTTGCAGGTGTGG+TGG | + | chr1_4:2785286-2785305 | Msa0143740:intron | 45.0% |
| AGTATATTGAGAGCGGTGAG+TGG | + | chr1_4:2785342-2785361 | Msa0143740:CDS | 45.0% | |
| AACTACCGCAACGTGAAGAA+CGG | - | chr1_4:2785435-2785454 | None:intergenic | 45.0% | |
| TAGCAGCAGCAAGAAGAACA+GGG | - | chr1_4:2785664-2785683 | None:intergenic | 45.0% | |
| TTAGCAGCAGCAAGAAGAAC+AGG | - | chr1_4:2785665-2785684 | None:intergenic | 45.0% | |
| TGTTCTTCTTGCTGCTGCTA+AGG | + | chr1_4:2785664-2785683 | Msa0143740:CDS | 45.0% | |
| GTTCTTCTTGCTGCTGCTAA+GGG | + | chr1_4:2785665-2785684 | Msa0143740:CDS | 45.0% | |
| TCTTTACCGTTGTACACCGT+TGG | + | chr1_4:2785709-2785728 | Msa0143740:CDS | 45.0% | |
| TGCGATAATTATCATCGGCC+AGG | - | chr1_4:2785739-2785758 | None:intergenic | 45.0% | |
| ! | GAGGCATTTGAGGAAATCGT+TGG | - | chr1_4:2785906-2785925 | None:intergenic | 45.0% |
| ! | AAGTGTGATTTGTGGGCAAG+AGG | - | chr1_4:2785925-2785944 | None:intergenic | 45.0% |
| ATGCGTGCCAATGCGTATAA+TGG | - | chr1_4:2785967-2785986 | None:intergenic | 45.0% | |
| ATGCCTTCTGTGTTTCCAAG+TGG | + | chr1_4:2785985-2786004 | Msa0143740:CDS | 45.0% | |
| CTACCACTTGGAAACACAGA+AGG | - | chr1_4:2785991-2786010 | None:intergenic | 45.0% | |
| TCTGTGTTTCCAAGTGGTAG+TGG | + | chr1_4:2785991-2786010 | Msa0143740:CDS | 45.0% | |
| AACCCATATCCACTACCACT+TGG | - | chr1_4:2786003-2786022 | None:intergenic | 45.0% | |
| TCGGGGACATCCGATAAAAT+TGG | - | chr1_4:2786584-2786603 | None:intergenic | 45.0% | |
| ! | ATTTTATCGGATGTCCCCGA+AGG | + | chr1_4:2786584-2786603 | Msa0143740:intron | 45.0% |
| ! | TTTTATCGGATGTCCCCGAA+GGG | + | chr1_4:2786585-2786604 | Msa0143740:intron | 45.0% |
| TACTCCTCAATTGTCCCTTC+GGG | - | chr1_4:2786602-2786621 | None:intergenic | 45.0% | |
| ATATGCGAATGGCGATTCTG+AGG | + | chr1_4:2786905-2786924 | Msa0143740:intron | 45.0% | |
| GTCTTGTAATCCAGACCCTA+AGG | + | chr1_4:2787140-2787159 | Msa0143740:intron | 45.0% | |
| ! | GGCTTTGTATTCACACCCTT+AGG | - | chr1_4:2787159-2787178 | None:intergenic | 45.0% |
| TCCCTCCAATTGTATCCATC+AGG | + | chr1_4:2787417-2787436 | Msa0143740:intron | 45.0% | |
| ATGTTGCAAGCAGCAAAGCA+TGG | + | chr1_4:2787564-2787583 | Msa0143740:CDS | 45.0% | |
| TGTTGCAAGCAGCAAAGCAT+GGG | + | chr1_4:2787565-2787584 | Msa0143740:CDS | 45.0% | |
| AGGGTAATCCTGACCTCTTA+TGG | + | chr1_4:2787616-2787635 | Msa0143740:CDS | 45.0% | |
| GGGTAATCCTGACCTCTTAT+GGG | + | chr1_4:2787617-2787636 | Msa0143740:CDS | 45.0% | |
| TGCAACTGTAAATGGACGGA+AGG | + | chr1_4:2787719-2787738 | Msa0143740:CDS | 45.0% | |
| AAATGCCGTGTAGACGCATT+TGG | + | chr1_4:2787750-2787769 | Msa0143740:CDS | 45.0% | |
| TGGCAATTCCATGTTGCACT+TGG | + | chr1_4:2787770-2787789 | Msa0143740:CDS | 45.0% | |
| AATTCCATGTTGCACTTGGC+AGG | + | chr1_4:2787774-2787793 | Msa0143740:CDS | 45.0% | |
| ATATCCTGCCAAGTGCAACA+TGG | - | chr1_4:2787781-2787800 | None:intergenic | 45.0% | |
| CTACGATCAAGATCAGAGGA+AGG | - | chr1_4:2787810-2787829 | None:intergenic | 45.0% | |
| GGATCTACGATCAAGATCAG+AGG | - | chr1_4:2787814-2787833 | None:intergenic | 45.0% | |
| TCTCTTTGCATCTGCATAGC+AGG | - | chr1_4:2787840-2787859 | None:intergenic | 45.0% | |
| CATGTATGTATGCGAGTGAG+AGG | - | chr1_4:2787907-2787926 | None:intergenic | 45.0% | |
| CATGCGTGCAGCTTATATGT+TGG | + | chr1_4:2787923-2787942 | Msa0143740:intron | 45.0% | |
| AATTGTGCACCCCAAGTGTA+AGG | + | chr1_4:2788365-2788384 | Msa0143740:intron | 45.0% | |
| GTGATGTCGTGCAAGAACAA+GGG | - | chr1_4:2788582-2788601 | None:intergenic | 45.0% | |
| TGTGATGTCGTGCAAGAACA+AGG | - | chr1_4:2788583-2788602 | None:intergenic | 45.0% | |
| ACTTCGGTCCTTCTCTTCAT+TGG | + | chr1_4:2788651-2788670 | Msa0143740:CDS | 45.0% | |
| ! | CATTGCCCTTTTCTTCTCTG+TGG | + | chr1_4:2788743-2788762 | Msa0143740:CDS | 45.0% |
| CATAGCAAGTGAAGCACAGA+AGG | - | chr1_4:2788784-2788803 | None:intergenic | 45.0% | |
| GACGGAACTAGAACGATAAC+AGG | - | chr1_4:2788861-2788880 | None:intergenic | 45.0% | |
| ATCTTGTGGGACATGGTCTG+TGG | + | chr1_4:2784229-2784248 | Msa0143740:CDS | 50.0% | |
| TCTTGTGGGACATGGTCTGT+GGG | + | chr1_4:2784230-2784249 | Msa0143740:CDS | 50.0% | |
| GCCGATCCAGATATTGAGCA+AGG | + | chr1_4:2784447-2784466 | Msa0143740:CDS | 50.0% | |
| AAACCTCTCCCAAGACGATC+TGG | + | chr1_4:2784903-2784922 | Msa0143740:intron | 50.0% | |
| AAACCAGATCGTCTTGGGAG+AGG | - | chr1_4:2784909-2784928 | None:intergenic | 50.0% | |
| TCTCCCAAGACGATCTGGTT+TGG | + | chr1_4:2784908-2784927 | Msa0143740:intron | 50.0% | |
| ! | CTCCCAAGACGATCTGGTTT+GGG | + | chr1_4:2784909-2784928 | Msa0143740:intron | 50.0% |
| ! | TCCCAAGACGATCTGGTTTG+GGG | + | chr1_4:2784910-2784929 | Msa0143740:intron | 50.0% |
| TCCCCAAACCAGATCGTCTT+GGG | - | chr1_4:2784914-2784933 | None:intergenic | 50.0% | |
| ACCCAAAGCCTAAATGCCGT+TGG | - | chr1_4:2785102-2785121 | None:intergenic | 50.0% | |
| !! | AACGGCATTTAGGCTTTGGG+TGG | + | chr1_4:2785101-2785120 | Msa0143740:intron | 50.0% |
| ATTCCACATCCTCTATGGGG+AGG | + | chr1_4:2785408-2785427 | Msa0143740:CDS | 50.0% | |
| TTCACGTTGCGGTAGTTGCT+GGG | + | chr1_4:2785438-2785457 | Msa0143740:CDS | 50.0% | |
| CAGCTCAGCAACAAGAGCTA+GGG | - | chr1_4:2785543-2785562 | None:intergenic | 50.0% | |
| TCAGCTCAGCAACAAGAGCT+AGG | - | chr1_4:2785544-2785563 | None:intergenic | 50.0% | |
| GGTCTTCCAACGGTGTACAA+CGG | - | chr1_4:2785718-2785737 | None:intergenic | 50.0% | |
| TTGTACACCGTTGGAAGACC+TGG | + | chr1_4:2785718-2785737 | Msa0143740:CDS | 50.0% | |
| !! | TTGTGGGCAAGAGGCATTTG+AGG | - | chr1_4:2785916-2785935 | None:intergenic | 50.0% |
| ACTCCTCAATTGTCCCTTCG+GGG | - | chr1_4:2786601-2786620 | None:intergenic | 50.0% | |
| TCACAACAAGGGTTCGCACA+AGG | - | chr1_4:2787076-2787095 | None:intergenic | 50.0% | |
| TCCGTTTGTGTGCTTTGCAC+CGG | + | chr1_4:2787113-2787132 | Msa0143740:intron | 50.0% | |
| TCCGGTGCAAAGCACACAAA+CGG | - | chr1_4:2787117-2787136 | None:intergenic | 50.0% | |
| GTATTCACACCCTTAGGGTC+TGG | - | chr1_4:2787153-2787172 | None:intergenic | 50.0% | |
| TCAATGGCCCATAAGAGGTC+AGG | - | chr1_4:2787627-2787646 | None:intergenic | 50.0% | |
| TTGCATCTGCATAGCAGGAC+CGG | - | chr1_4:2787835-2787854 | None:intergenic | 50.0% | |
| TACAGAAAGCCACAAGGAGC+TGG | + | chr1_4:2788428-2788447 | Msa0143740:intron | 50.0% | |
| ACAAGGAGCTGGTGAAAGCT+GGG | + | chr1_4:2788439-2788458 | Msa0143740:intron | 50.0% | |
| TGGTGAAAGCTGGGGAGAAA+TGG | + | chr1_4:2788448-2788467 | Msa0143740:CDS | 50.0% | |
| GGTGAAAGCTGGGGAGAAAT+GGG | + | chr1_4:2788449-2788468 | Msa0143740:CDS | 50.0% | |
| TTTCAGCGTAACGAGCCGTT+AGG | - | chr1_4:2788680-2788699 | None:intergenic | 50.0% | |
| ! | AGGAAGAGGCGCAATTGTGA+CGG | - | chr1_4:2788879-2788898 | None:intergenic | 50.0% |
| CTTGTGGGACATGGTCTGTG+GGG | + | chr1_4:2784231-2784250 | Msa0143740:CDS | 55.0% | |
| GTCCCCAAACCAGATCGTCT+TGG | - | chr1_4:2784915-2784934 | None:intergenic | 55.0% | |
| GGTTTGGGGACGAAGCAATG+AGG | + | chr1_4:2784924-2784943 | Msa0143740:intron | 55.0% | |
| AAGAACGGTCCTCCCCATAG+AGG | - | chr1_4:2785420-2785439 | None:intergenic | 55.0% | |
| GAGGACCGTTCTTCACGTTG+CGG | + | chr1_4:2785427-2785446 | Msa0143740:CDS | 55.0% | |
| CTTCACGTTGCGGTAGTTGC+TGG | + | chr1_4:2785437-2785456 | Msa0143740:CDS | 55.0% | |
| GCTCTTGTTGCTGAGCTGAC+CGG | + | chr1_4:2785545-2785564 | Msa0143740:CDS | 55.0% | |
| TCATCGGCCAGGTCTTCCAA+CGG | - | chr1_4:2785728-2785747 | None:intergenic | 55.0% | |
| TGTCCCCGAAGGGACAATTG+AGG | + | chr1_4:2786595-2786614 | Msa0143740:intron | 55.0% | |
| CAGCTTTCACCAGCTCCTTG+TGG | - | chr1_4:2788440-2788459 | None:intergenic | 55.0% | |
| CACAAGGAGCTGGTGAAAGC+TGG | + | chr1_4:2788438-2788457 | Msa0143740:intron | 55.0% | |
| CAAGGAGCTGGTGAAAGCTG+GGG | + | chr1_4:2788440-2788459 | Msa0143740:intron | 55.0% | |
| GGTCCTCCCCATAGAGGATG+TGG | - | chr1_4:2785414-2785433 | None:intergenic | 60.0% | |
| GCTGCAGCTTTCACTGTCCC+TGG | + | chr1_4:2788531-2788550 | Msa0143740:CDS | 60.0% | |
| GCAGCTTTCACTGTCCCTGG+TGG | + | chr1_4:2788534-2788553 | Msa0143740:CDS | 60.0% | |
| TGCGGTAGTTGCTGGGCACG+AGG | + | chr1_4:2785445-2785464 | Msa0143740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2784225 | 2788986 | 2784225 | ID=Msa0143740;Name=Msa0143740 |
| chr1_4 | mRNA | 2784225 | 2788986 | 2784225 | ID=Msa0143740-mRNA-1;Parent=Msa0143740;Name=Msa0143740-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.16|0.14|7|0|610 |
| chr1_4 | exon | 2784225 | 2784468 | 2784225 | ID=Msa0143740-mRNA-1:exon:1250;Parent=Msa0143740-mRNA-1 |
| chr1_4 | exon | 2785300 | 2785530 | 2785300 | ID=Msa0143740-mRNA-1:exon:1251;Parent=Msa0143740-mRNA-1 |
| chr1_4 | exon | 2785540 | 2785761 | 2785540 | ID=Msa0143740-mRNA-1:exon:1252;Parent=Msa0143740-mRNA-1 |
| chr1_4 | exon | 2785884 | 2786045 | 2785884 | ID=Msa0143740-mRNA-1:exon:1253;Parent=Msa0143740-mRNA-1 |
| chr1_4 | exon | 2787439 | 2787687 | 2787439 | ID=Msa0143740-mRNA-1:exon:1254;Parent=Msa0143740-mRNA-1 |
| chr1_4 | exon | 2787697 | 2787875 | 2787697 | ID=Msa0143740-mRNA-1:exon:1255;Parent=Msa0143740-mRNA-1 |
| chr1_4 | exon | 2788444 | 2788986 | 2788444 | ID=Msa0143740-mRNA-1:exon:1256;Parent=Msa0143740-mRNA-1 |
| chr1_4 | CDS | 2784225 | 2784468 | 2784225 | ID=Msa0143740-mRNA-1:cds;Parent=Msa0143740-mRNA-1 |
| chr1_4 | CDS | 2785300 | 2785530 | 2785300 | ID=Msa0143740-mRNA-1:cds;Parent=Msa0143740-mRNA-1 |
| chr1_4 | CDS | 2785540 | 2785761 | 2785540 | ID=Msa0143740-mRNA-1:cds;Parent=Msa0143740-mRNA-1 |
| chr1_4 | CDS | 2785884 | 2786045 | 2785884 | ID=Msa0143740-mRNA-1:cds;Parent=Msa0143740-mRNA-1 |
| chr1_4 | CDS | 2787439 | 2787687 | 2787439 | ID=Msa0143740-mRNA-1:cds;Parent=Msa0143740-mRNA-1 |
| chr1_4 | CDS | 2787697 | 2787875 | 2787697 | ID=Msa0143740-mRNA-1:cds;Parent=Msa0143740-mRNA-1 |
| chr1_4 | CDS | 2788444 | 2788986 | 2788444 | ID=Msa0143740-mRNA-1:cds;Parent=Msa0143740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
