Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143680 | XP_024640501.2 | 65.022 | 689 | 129 | 7 | 19 | 597 | 28 | 714 | 0.0 | 858 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143680 | A0A396HTM3 | 65.341 | 704 | 116 | 10 | 19 | 596 | 32 | 733 | 0.0 | 851 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0143680 | 0.829492 | 4.993022e-55 | -8.615850e-47 |
| Msa0024280 | Msa0143680 | 0.813416 | 2.588211e-51 | -8.615850e-47 |
| Msa0048950 | Msa0143680 | 0.853030 | 3.128448e-61 | -8.615850e-47 |
| Msa0059880 | Msa0143680 | 0.882684 | 8.473167e-71 | -8.615850e-47 |
| Msa0072030 | Msa0143680 | 0.803251 | 3.810845e-49 | -8.615850e-47 |
| Msa0131460 | Msa0143680 | 0.806048 | 9.937989e-50 | -8.615850e-47 |
| Msa0139460 | Msa0143680 | 0.808823 | 2.562708e-50 | -8.615850e-47 |
| Msa0140270 | Msa0143680 | 0.815530 | 8.820152e-52 | -8.615850e-47 |
| Msa0143680 | Msa0143710 | 0.970604 | 7.195328e-132 | -8.615850e-47 |
| Msa0143680 | Msa0143740 | 0.964465 | 2.318490e-123 | -8.615850e-47 |
| Msa0143680 | Msa0143770 | 0.958845 | 8.559934e-117 | -8.615850e-47 |
| Msa0143680 | Msa0147670 | 0.803506 | 3.374142e-49 | -8.615850e-47 |
| Msa0143680 | Msa0150910 | 0.868685 | 5.432011e-66 | -8.615850e-47 |
| Msa0143680 | Msa0163340 | 0.832664 | 8.307727e-56 | -8.615850e-47 |
| Msa0143680 | Msa0177550 | 0.809662 | 1.693616e-50 | -8.615850e-47 |
| Msa0143680 | Msa0190670 | 0.811870 | 5.638666e-51 | -8.615850e-47 |
| Msa0143680 | Msa0212550 | 0.810588 | 1.069583e-50 | -8.615850e-47 |
| Msa0143680 | Msa0219210 | 0.809040 | 2.303339e-50 | -8.615850e-47 |
| Msa0143680 | Msa0223880 | 0.808610 | 2.846607e-50 | -8.615850e-47 |
| Msa0143680 | Msa0252930 | 0.816331 | 5.843058e-52 | -8.615850e-47 |
| Msa0143680 | Msa0259110 | 0.821301 | 4.343250e-53 | -8.615850e-47 |
| Msa0143680 | Msa0259300 | 0.802097 | 6.592842e-49 | -8.615850e-47 |
| Msa0143680 | Msa0265060 | 0.805332 | 1.404771e-49 | -8.615850e-47 |
| Msa0143680 | Msa0274250 | 0.810117 | 1.352043e-50 | -8.615850e-47 |
| Msa0143680 | Msa0274260 | 0.807884 | 4.064520e-50 | -8.615850e-47 |
| Msa0143680 | Msa0278950 | 0.814015 | 1.910624e-51 | -8.615850e-47 |
| Msa0143680 | Msa0298270 | 0.822258 | 2.607799e-53 | -8.615850e-47 |
| Msa0143680 | Msa0336070 | 0.805309 | 1.420520e-49 | -8.615850e-47 |
| Msa0143680 | Msa0340650 | 0.806453 | 8.165391e-50 | -8.615850e-47 |
| Msa0143680 | Msa0342130 | 0.818076 | 2.367016e-52 | -8.615850e-47 |
| Msa0143680 | Msa0342160 | 0.806865 | 6.685073e-50 | -8.615850e-47 |
| Msa0143680 | Msa0343720 | 0.801824 | 7.503377e-49 | -8.615850e-47 |
| Msa0143680 | Msa0374130 | 0.809060 | 2.279976e-50 | -8.615850e-47 |
| Msa0143680 | Msa0414480 | 0.807564 | 4.753828e-50 | -8.615850e-47 |
| Msa0143680 | Msa0430460 | 0.804453 | 2.144725e-49 | -8.615850e-47 |
| Msa0143680 | Msa0444250 | 0.805762 | 1.141671e-49 | -8.615850e-47 |
| Msa0143680 | Msa0469550 | 0.811565 | 6.569033e-51 | -8.615850e-47 |
| Msa0143680 | Msa0491760 | 0.806866 | 6.681170e-50 | -8.615850e-47 |
| Msa0143680 | Msa0491770 | 0.807623 | 4.617695e-50 | -8.615850e-47 |
| Msa0143680 | Msa0515260 | 0.811655 | 6.280535e-51 | -8.615850e-47 |
| Msa0143680 | Msa0535570 | 0.846119 | 2.652919e-59 | -8.615850e-47 |
| Msa0143680 | Msa0538450 | 0.801797 | 7.598894e-49 | -8.615850e-47 |
| Msa0143680 | Msa0538520 | 0.801041 | 1.085648e-48 | -8.615850e-47 |
| Msa0143680 | Msa0548970 | 0.815175 | 1.057871e-51 | -8.615850e-47 |
| Msa0143680 | Msa0549920 | 0.845900 | 3.042752e-59 | -8.615850e-47 |
| Msa0143680 | Msa0549930 | 0.849426 | 3.258582e-60 | -8.615850e-47 |
| Msa0143680 | Msa0554660 | 0.804765 | 1.845963e-49 | -8.615850e-47 |
| Msa0143680 | Msa0579530 | 0.822028 | 2.948512e-53 | -8.615850e-47 |
| Msa0143680 | Msa0591490 | 0.846782 | 1.749201e-59 | -8.615850e-47 |
| Msa0143680 | Msa0594320 | 0.809493 | 1.841252e-50 | -8.615850e-47 |
| Msa0143680 | Msa0599600 | 0.805203 | 1.494790e-49 | -8.615850e-47 |
| Msa0143680 | Msa0602050 | 0.815099 | 1.099445e-51 | -8.615850e-47 |
| Msa0143680 | Msa0603950 | 0.826661 | 2.399788e-54 | -8.615850e-47 |
| Msa0143680 | Msa0605400 | 0.809000 | 2.348918e-50 | -8.615850e-47 |
| Msa0143680 | Msa0605410 | 0.814934 | 1.196500e-51 | -8.615850e-47 |
| Msa0143680 | Msa0605470 | 0.836650 | 8.261817e-57 | -8.615850e-47 |
| Msa0143680 | Msa0623980 | 0.843556 | 1.303349e-58 | -8.615850e-47 |
| Msa0143680 | Msa0631700 | 0.832923 | 7.163716e-56 | -8.615850e-47 |
| Msa0143680 | Msa0643840 | 0.831887 | 1.293730e-55 | -8.615850e-47 |
| Msa0143680 | Msa0645150 | 0.804269 | 2.342659e-49 | -8.615850e-47 |
| Msa0143680 | Msa0646210 | 0.842044 | 3.287314e-58 | -8.615850e-47 |
| Msa0143680 | Msa0670260 | 0.801098 | 1.056763e-48 | -8.615850e-47 |
| Msa0143680 | Msa0670360 | 0.855152 | 7.639558e-62 | -8.615850e-47 |
| Msa0143680 | Msa0671640 | 0.845707 | 3.433176e-59 | -8.615850e-47 |
| Msa0143680 | Msa0678620 | 0.828940 | 6.799819e-55 | -8.615850e-47 |
| Msa0143680 | Msa0684720 | 0.838114 | 3.485700e-57 | -8.615850e-47 |
| Msa0143680 | Msa0711240 | 0.818551 | 1.847835e-52 | -8.615850e-47 |
| Msa0143680 | Msa0719880 | 0.861060 | 1.337432e-63 | -8.615850e-47 |
| Msa0143680 | Msa0727480 | 0.850923 | 1.240030e-60 | -8.615850e-47 |
| Msa0143680 | Msa0735280 | 0.826233 | 3.035038e-54 | -8.615850e-47 |
| Msa0143680 | Msa0735340 | 0.800124 | 1.669964e-48 | -8.615850e-47 |
| Msa0143680 | Msa0758000 | 0.802665 | 5.036372e-49 | -8.615850e-47 |
| Msa0143680 | Msa0763300 | 0.829079 | 6.290661e-55 | -8.615850e-47 |
| Msa0143680 | Msa0768670 | 0.852638 | 4.049557e-61 | -8.615850e-47 |
| Msa0143680 | Msa0768720 | 0.849817 | 2.535160e-60 | -8.615850e-47 |
| Msa0143680 | Msa0777070 | 0.807967 | 3.902560e-50 | -8.615850e-47 |
| Msa0143680 | Msa0777250 | 0.817831 | 2.688435e-52 | -8.615850e-47 |
| Msa0143680 | Msa0787860 | 0.803636 | 3.171305e-49 | -8.615850e-47 |
| Msa0143680 | Msa0791300 | 0.800167 | 1.636652e-48 | -8.615850e-47 |
| Msa0143680 | Msa0802590 | 0.918794 | 1.003095e-86 | -8.615850e-47 |
| Msa0143680 | Msa0814160 | 0.844886 | 5.724425e-59 | -8.615850e-47 |
| Msa0143680 | Msa0824860 | 0.807587 | 4.699628e-50 | -8.615850e-47 |
| Msa0143680 | Msa0841130 | 0.919088 | 6.961603e-87 | -8.615850e-47 |
| Msa0143680 | Msa0841170 | 0.919879 | 2.590772e-87 | -8.615850e-47 |
| Msa0143680 | Msa0854840 | 0.824287 | 8.756921e-54 | -8.615850e-47 |
| Msa0143680 | Msa0863840 | 0.824360 | 8.419745e-54 | -8.615850e-47 |
| Msa0143680 | Msa0864160 | 0.805986 | 1.024062e-49 | -8.615850e-47 |
| Msa0143680 | Msa0883640 | 0.854696 | 1.036733e-61 | -8.615850e-47 |
| Msa0143680 | Msa0902340 | 0.843419 | 1.417919e-58 | -8.615850e-47 |
| Msa0143680 | Msa0910830 | 0.875840 | 2.244235e-68 | -8.615850e-47 |
| Msa0143680 | Msa0913550 | 0.820113 | 8.143861e-53 | -8.615850e-47 |
| Msa0143680 | Msa0951150 | 0.821452 | 4.006590e-53 | -8.615850e-47 |
| Msa0143680 | Msa0960090 | 0.856269 | 3.606499e-62 | -8.615850e-47 |
| Msa0143680 | Msa0967820 | 0.824052 | 9.947179e-54 | -8.615850e-47 |
| Msa0143680 | Msa0985700 | 0.855459 | 6.218869e-62 | -8.615850e-47 |
| Msa0143680 | Msa0985710 | 0.800291 | 1.543911e-48 | -8.615850e-47 |
| Msa0143680 | Msa0987640 | 0.830608 | 2.669244e-55 | -8.615850e-47 |
| Msa0143680 | Msa0993450 | 0.845022 | 5.261626e-59 | -8.615850e-47 |
| Msa0143680 | Msa1003110 | 0.868647 | 5.589294e-66 | -8.615850e-47 |
| Msa0143680 | Msa1006170 | 0.802426 | 5.641753e-49 | -8.615850e-47 |
| Msa0143680 | Msa1007940 | 0.800227 | 1.591294e-48 | -8.615850e-47 |
| Msa0143680 | Msa1020540 | 0.876325 | 1.527090e-68 | -8.615850e-47 |
| Msa0143680 | Msa1021620 | 0.879634 | 1.061338e-69 | -8.615850e-47 |
| Msa0143680 | Msa1024350 | 0.827173 | 1.810978e-54 | -8.615850e-47 |
| Msa0143680 | Msa1026050 | 0.828069 | 1.103312e-54 | -8.615850e-47 |
| Msa0143680 | Msa1036590 | 0.801469 | 8.874970e-49 | -8.615850e-47 |
| Msa0143680 | Msa1041630 | 0.807024 | 6.185951e-50 | -8.615850e-47 |
| Msa0143680 | Msa1046210 | 0.827929 | 1.192178e-54 | -8.615850e-47 |
| Msa0143680 | Msa1061670 | 0.835753 | 1.396470e-56 | -8.615850e-47 |
| Msa0143680 | Msa1076830 | 0.820217 | 7.708877e-53 | -8.615850e-47 |
| Msa0143680 | Msa1076900 | 0.805141 | 1.540342e-49 | -8.615850e-47 |
| Msa0143680 | Msa1081530 | -0.804995 | 1.652748e-49 | -8.615850e-47 |
| Msa0143680 | Msa1081610 | 0.809763 | 1.610921e-50 | -8.615850e-47 |
| Msa0143680 | Msa1087370 | 0.811219 | 7.808884e-51 | -8.615850e-47 |
| Msa0143680 | Msa1087380 | 0.831671 | 1.462286e-55 | -8.615850e-47 |
| Msa0143680 | Msa1091000 | 0.849973 | 2.292517e-60 | -8.615850e-47 |
| Msa0143680 | Msa1104960 | 0.809824 | 1.562869e-50 | -8.615850e-47 |
| Msa0143680 | Msa1106960 | 0.826089 | 3.284886e-54 | -8.615850e-47 |
| Msa0143680 | Msa1109880 | 0.830714 | 2.513936e-55 | -8.615850e-47 |
| Msa0143680 | Msa1109890 | 0.864146 | 1.499450e-64 | -8.615850e-47 |
| Msa0143680 | Msa1133860 | 0.865440 | 5.895934e-65 | -8.615850e-47 |
| Msa0143680 | Msa1149020 | 0.869750 | 2.449392e-66 | -8.615850e-47 |
| Msa0143680 | Msa1156240 | 0.802624 | 5.134767e-49 | -8.615850e-47 |
| Msa0143680 | Msa1166530 | 0.810920 | 9.066733e-51 | -8.615850e-47 |
| Msa0143680 | Msa1193400 | -0.800900 | 1.159927e-48 | -8.615850e-47 |
| Msa0143680 | Msa1214960 | 0.818981 | 1.475520e-52 | -8.615850e-47 |
| Msa0143680 | Msa1216600 | 0.809580 | 1.763498e-50 | -8.615850e-47 |
| Msa0143680 | Msa1249410 | -0.809279 | 2.046529e-50 | -8.615850e-47 |
| Msa0143680 | Msa1286420 | 0.860175 | 2.480992e-63 | -8.615850e-47 |
| Msa0143680 | Msa1296870 | 0.828302 | 9.693432e-55 | -8.615850e-47 |
| Msa0143680 | Msa1300610 | 0.833816 | 4.290440e-56 | -8.615850e-47 |
| Msa0143680 | Msa1323030 | 0.835308 | 1.810136e-56 | -8.615850e-47 |
| Msa0143680 | Msa1323120 | 0.830669 | 2.578721e-55 | -8.615850e-47 |
| Msa0143680 | Msa1323160 | 0.820165 | 7.921242e-53 | -8.615850e-47 |
| Msa0143680 | Msa1329740 | 0.807732 | 4.377632e-50 | -8.615850e-47 |
| Msa0143680 | Msa1357490 | 0.814748 | 1.315663e-51 | -8.615850e-47 |
| Msa0143680 | Msa1357750 | 0.816745 | 4.720578e-52 | -8.615850e-47 |
| Msa0143680 | Msa1357860 | 0.816711 | 4.803951e-52 | -8.615850e-47 |
| Msa0143680 | Msa1359620 | -0.805384 | 1.370315e-49 | -8.615850e-47 |
| Msa0143680 | Msa1373560 | 0.830273 | 3.223127e-55 | -8.615850e-47 |
| Msa0143680 | Msa1376070 | 0.831697 | 1.440940e-55 | -8.615850e-47 |
| Msa0143680 | Msa1377460 | 0.808360 | 3.217921e-50 | -8.615850e-47 |
| Msa0143680 | Msa1377520 | 0.827989 | 1.153700e-54 | -8.615850e-47 |
| Msa0143680 | Msa1378400 | 0.807569 | 4.740235e-50 | -8.615850e-47 |
| Msa0143680 | Msa1403700 | -0.805692 | 1.180907e-49 | -8.615850e-47 |
| Msa0143680 | Msa1407670 | 0.830563 | 2.736604e-55 | -8.615850e-47 |
| Msa0143680 | Msa1409060 | 0.804181 | 2.443154e-49 | -8.615850e-47 |
| Msa0143680 | Msa1420020 | 0.811355 | 7.295828e-51 | -8.615850e-47 |
| Msa0143680 | Msa1421120 | 0.808112 | 3.634619e-50 | -8.615850e-47 |
| Msa0143680 | Msa1440400 | 0.912907 | 1.135943e-83 | -8.615850e-47 |
| Msa0143680 | Msa1443550 | -0.809633 | 1.718079e-50 | -8.615850e-47 |
| Msa0143680 | Msa1449770 | 0.833041 | 6.695595e-56 | -8.615850e-47 |
| Msa0143680 | Msa1459610 | 0.821967 | 3.046690e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143680 | MtrunA17_Chr5g0410171 | 65.341 | 704 | 116 | 10 | 19 | 596 | 32 | 733 | 0.0 | 851 |
| Msa0143680 | MtrunA17_Chr5g0410341 | 85.460 | 337 | 5 | 2 | 306 | 598 | 411 | 747 | 0.0 | 562 |
| Msa0143680 | MtrunA17_Chr5g0410341 | 87.859 | 313 | 14 | 4 | 19 | 307 | 30 | 342 | 0.0 | 556 |
| Msa0143680 | MtrunA17_Chr5g0410201 | 74.924 | 327 | 38 | 2 | 314 | 596 | 1 | 327 | 8.13e-168 | 480 |
| Msa0143680 | MtrunA17_Chr5g0410271 | 74.540 | 326 | 39 | 2 | 316 | 597 | 2 | 327 | 1.96e-165 | 474 |
| Msa0143680 | MtrunA17_Chr6g0457101 | 39.882 | 677 | 291 | 16 | 19 | 597 | 30 | 688 | 5.01e-140 | 423 |
| Msa0143680 | MtrunA17_Chr5g0410461 | 51.762 | 369 | 124 | 7 | 278 | 594 | 96 | 462 | 9.06e-108 | 332 |
| Msa0143680 | MtrunA17_Chr6g0456141 | 49.555 | 337 | 122 | 5 | 306 | 597 | 51 | 384 | 4.76e-100 | 309 |
| Msa0143680 | MtrunA17_Chr5g0410371 | 57.095 | 296 | 77 | 4 | 347 | 594 | 1 | 294 | 2.53e-99 | 304 |
| Msa0143680 | MtrunA17_Chr6g0456101 | 34.728 | 717 | 311 | 23 | 19 | 590 | 30 | 734 | 3.64e-99 | 318 |
| Msa0143680 | MtrunA17_Chr5g0410191 | 80.368 | 163 | 32 | 0 | 436 | 598 | 32 | 194 | 3.25e-84 | 261 |
| Msa0143680 | MtrunA17_Chr5g0410581 | 30.720 | 778 | 325 | 25 | 19 | 595 | 31 | 795 | 1.50e-78 | 264 |
| Msa0143680 | MtrunA17_Chr5g0410291 | 67.010 | 194 | 41 | 5 | 128 | 302 | 1 | 190 | 2.89e-77 | 244 |
| Msa0143680 | MtrunA17_Chr5g0410211 | 63.918 | 194 | 50 | 4 | 128 | 301 | 1 | 194 | 5.87e-71 | 227 |
| Msa0143680 | MtrunA17_Chr5g0410181 | 79.104 | 134 | 28 | 0 | 464 | 597 | 1 | 134 | 3.46e-68 | 217 |
| Msa0143680 | MtrunA17_Chr2g0297701 | 30.686 | 554 | 297 | 18 | 108 | 598 | 44 | 573 | 8.87e-58 | 204 |
| Msa0143680 | MtrunA17_Chr5g0443001 | 30.651 | 584 | 294 | 22 | 109 | 594 | 31 | 601 | 6.82e-55 | 196 |
| Msa0143680 | MtrunA17_Chr2g0297691 | 27.179 | 677 | 368 | 23 | 22 | 594 | 36 | 691 | 2.04e-49 | 182 |
| Msa0143680 | MtrunA17_Chr2g0297681 | 26.379 | 671 | 377 | 22 | 22 | 593 | 36 | 688 | 9.73e-47 | 175 |
| Msa0143680 | MtrunA17_Chr2g0297651 | 26.449 | 673 | 375 | 21 | 22 | 594 | 38 | 690 | 1.55e-46 | 174 |
| Msa0143680 | MtrunA17_Chr5g0410451 | 49.697 | 165 | 78 | 1 | 436 | 595 | 71 | 235 | 1.04e-45 | 161 |
| Msa0143680 | MtrunA17_Chr3g0100741 | 25.760 | 559 | 313 | 13 | 109 | 577 | 33 | 579 | 3.46e-44 | 166 |
| Msa0143680 | MtrunA17_Chr5g0410541 | 52.121 | 165 | 73 | 2 | 436 | 595 | 53 | 216 | 7.04e-44 | 156 |
| Msa0143680 | MtrunA17_Chr2g0297491 | 35.971 | 278 | 144 | 4 | 348 | 594 | 103 | 377 | 1.98e-43 | 160 |
| Msa0143680 | MtrunA17_Chr6g0456151 | 42.023 | 257 | 118 | 9 | 19 | 254 | 30 | 276 | 8.18e-43 | 155 |
| Msa0143680 | MtrunA17_Chr5g0410471 | 45.909 | 220 | 105 | 5 | 23 | 239 | 105 | 313 | 5.14e-41 | 151 |
| Msa0143680 | MtrunA17_Chr3g0100301 | 41.327 | 196 | 78 | 2 | 425 | 590 | 209 | 397 | 3.81e-39 | 148 |
| Msa0143680 | MtrunA17_Chr2g0297711 | 27.186 | 526 | 298 | 16 | 108 | 594 | 47 | 526 | 1.32e-38 | 149 |
| Msa0143680 | MtrunA17_Chr2g0297481 | 34.420 | 276 | 147 | 5 | 348 | 594 | 201 | 471 | 3.66e-38 | 147 |
| Msa0143680 | MtrunA17_Chr3g0096941 | 24.777 | 561 | 315 | 15 | 109 | 576 | 33 | 579 | 4.11e-37 | 145 |
| Msa0143680 | MtrunA17_Chr5g0410411 | 39.464 | 261 | 107 | 9 | 19 | 239 | 30 | 279 | 1.46e-36 | 139 |
| Msa0143680 | MtrunA17_Chr5g0410381 | 39.837 | 246 | 101 | 8 | 100 | 304 | 3 | 242 | 3.65e-36 | 135 |
| Msa0143680 | MtrunA17_Chr5g0410251 | 65.854 | 82 | 28 | 0 | 19 | 100 | 28 | 109 | 6.37e-33 | 122 |
| Msa0143680 | MtrunA17_Chr2g0286601 | 33.106 | 293 | 141 | 6 | 329 | 576 | 371 | 653 | 1.96e-30 | 126 |
| Msa0143680 | MtrunA17_Chr5g0410511 | 42.949 | 156 | 80 | 1 | 436 | 591 | 32 | 178 | 1.22e-29 | 116 |
| Msa0143680 | MtrunA17_Chr3g0098481 | 29.560 | 318 | 159 | 8 | 334 | 594 | 22 | 331 | 4.90e-29 | 118 |
| Msa0143680 | MtrunA17_Chr3g0102001 | 30.293 | 307 | 147 | 7 | 346 | 595 | 440 | 736 | 1.11e-26 | 115 |
| Msa0143680 | MtrunA17_Chr2g0286551 | 31.488 | 289 | 149 | 6 | 347 | 590 | 370 | 654 | 5.70e-25 | 109 |
| Msa0143680 | MtrunA17_Chr2g0286561 | 38.849 | 139 | 78 | 1 | 438 | 576 | 47 | 178 | 2.21e-24 | 101 |
| Msa0143680 | MtrunA17_Chr5g0410501 | 40.972 | 144 | 68 | 3 | 307 | 435 | 147 | 288 | 6.09e-24 | 102 |
| Msa0143680 | MtrunA17_Chr3g0098301 | 27.184 | 309 | 170 | 8 | 334 | 590 | 88 | 393 | 2.17e-22 | 99.8 |
| Msa0143680 | MtrunA17_Chr5g0410561 | 37.321 | 209 | 120 | 7 | 50 | 254 | 2 | 203 | 7.71e-22 | 94.4 |
| Msa0143680 | MtrunA17_Chr5g0439081 | 36.076 | 158 | 94 | 3 | 435 | 587 | 41 | 196 | 3.48e-21 | 92.4 |
| Msa0143680 | MtrunA17_Chr5g0410551 | 46.667 | 105 | 39 | 3 | 347 | 436 | 1 | 103 | 1.06e-20 | 88.2 |
| Msa0143680 | MtrunA17_Chr1g0211541 | 25.541 | 462 | 239 | 19 | 119 | 515 | 6 | 427 | 3.07e-20 | 94.4 |
| Msa0143680 | MtrunA17_Chr2g0284501 | 28.364 | 275 | 154 | 7 | 356 | 597 | 392 | 656 | 1.20e-19 | 93.2 |
| Msa0143680 | MtrunA17_Chr3g0098531 | 27.234 | 235 | 136 | 4 | 392 | 592 | 48 | 281 | 3.34e-19 | 88.6 |
| Msa0143680 | MtrunA17_Chr5g0439061 | 28.082 | 292 | 160 | 6 | 347 | 590 | 437 | 726 | 2.69e-18 | 89.0 |
| Msa0143680 | MtrunA17_Chr3g0100921 | 40.650 | 123 | 72 | 1 | 455 | 576 | 2 | 124 | 9.91e-18 | 80.1 |
| Msa0143680 | MtrunA17_Chr2g0284541 | 27.673 | 318 | 174 | 7 | 318 | 588 | 322 | 630 | 9.92e-18 | 87.0 |
| Msa0143680 | MtrunA17_Chr5g0410441 | 43.333 | 90 | 48 | 2 | 348 | 436 | 1 | 88 | 1.54e-17 | 78.6 |
| Msa0143680 | MtrunA17_Chr5g0439051 | 34.591 | 159 | 102 | 2 | 436 | 593 | 50 | 207 | 1.20e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143680 | AT3G18670.1 | 35.334 | 583 | 275 | 19 | 88 | 598 | 35 | 587 | 4.98e-96 | 306 |
| Msa0143680 | AT3G18670.2 | 33.280 | 628 | 282 | 19 | 88 | 598 | 35 | 642 | 3.09e-93 | 300 |
| Msa0143680 | AT5G04690.3 | 30.345 | 580 | 306 | 13 | 99 | 594 | 66 | 631 | 1.09e-64 | 224 |
| Msa0143680 | AT5G04690.1 | 31.194 | 561 | 306 | 15 | 99 | 594 | 66 | 611 | 3.33e-63 | 219 |
| Msa0143680 | AT5G04690.2 | 29.798 | 594 | 305 | 14 | 99 | 594 | 66 | 645 | 3.27e-62 | 218 |
| Msa0143680 | AT5G04700.1 | 29.202 | 589 | 302 | 14 | 108 | 594 | 80 | 655 | 9.18e-60 | 211 |
| Msa0143680 | AT5G04680.3 | 28.253 | 584 | 308 | 16 | 108 | 594 | 67 | 636 | 2.55e-52 | 190 |
| Msa0143680 | AT5G04680.4 | 28.020 | 596 | 308 | 16 | 108 | 594 | 67 | 650 | 1.21e-50 | 186 |
| Msa0143680 | AT5G04680.2 | 28.518 | 533 | 262 | 15 | 169 | 594 | 7 | 527 | 4.82e-47 | 173 |
| Msa0143680 | AT5G04730.1 | 29.050 | 537 | 277 | 16 | 156 | 594 | 58 | 588 | 7.19e-47 | 174 |
| Msa0143680 | AT5G04680.1 | 27.083 | 624 | 307 | 21 | 108 | 594 | 67 | 679 | 5.11e-46 | 173 |
| Msa0143680 | AT5G35810.1 | 34.520 | 281 | 145 | 5 | 355 | 598 | 57 | 335 | 2.33e-43 | 159 |
| Msa0143680 | AT3G54065.1 | 39.535 | 172 | 68 | 2 | 422 | 557 | 8 | 179 | 9.85e-33 | 126 |
| Msa0143680 | AT5G04700.2 | 25.063 | 399 | 216 | 11 | 108 | 436 | 80 | 465 | 1.73e-22 | 101 |
| Msa0143680 | AT3G54070.1 | 28.324 | 173 | 111 | 6 | 84 | 250 | 24 | 189 | 4.85e-12 | 67.0 |
| Msa0143680 | AT5G35830.1 | 30.000 | 160 | 101 | 4 | 96 | 250 | 73 | 226 | 7.17e-12 | 67.0 |
Find 147 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCACTTGGCAGGATATTT+AGG | 0.127030 | 1_4:+2697092 | Msa0143680:CDS |
| CCAAAGAATTCAAGAGTTTA+AGG | 0.157617 | 1_4:+2696815 | Msa0143680:CDS |
| TTCACTTGCTATGCTCTTAA+AGG | 0.220345 | 1_4:+2698100 | Msa0143680:CDS |
| CCTTAAACTCTTGAATTCTT+TGG | 0.238324 | 1_4:-2696815 | None:intergenic |
| TAAAGAAGCCTGGAATAAAT+TGG | 0.241875 | 1_4:+2693707 | Msa0143680:CDS |
| ATACATGATGCAACTGTAAA+TGG | 0.242921 | 1_4:+2697020 | Msa0143680:CDS |
| TTAGAACGCGCACCAATTTC+AGG | 0.251761 | 1_4:-2693579 | None:intergenic |
| CTTCGCTATATTCGTGTTTC+CGG | 0.254247 | 1_4:-2694857 | None:intergenic |
| AATATATTCCACATCCTCTA+TGG | 0.260429 | 1_4:+2694696 | Msa0143680:CDS |
| GTGACCTCTATTCCTGAAAT+TGG | 0.292763 | 1_4:+2693567 | Msa0143680:CDS |
| TATATACCTTGCTCAATATC+TGG | 0.305429 | 1_4:-2693762 | None:intergenic |
| TGCACTTGGCAGGATATTTA+GGG | 0.308043 | 1_4:+2697093 | Msa0143680:CDS |
| TTTCCAAGTGGTAGTGGATA+TGG | 0.311953 | 1_4:+2695290 | Msa0143680:CDS |
| ACTTCGGTCCTTCTCTTCAT+TGG | 0.319322 | 1_4:+2697960 | Msa0143680:CDS |
| AATTGTATCCATCAGGAATA+AGG | 0.321064 | 1_4:+2696733 | Msa0143680:intron |
| CTTCACGTTGCGGTAGTTGC+TGG | 0.322177 | 1_4:+2694730 | Msa0143680:CDS |
| CTAAGACTGAATATGAGATT+TGG | 0.338368 | 1_4:+2693598 | Msa0143680:CDS |
| CGAGGAAATTGTGAAGAAAT+TGG | 0.372095 | 1_4:+2694756 | Msa0143680:CDS |
| ATGCAAACTCGTTTATTAAG+AGG | 0.378242 | 1_4:+2694662 | Msa0143680:CDS |
| AACAGGGATTTCACCATCAT+TGG | 0.379563 | 1_4:-2694938 | None:intergenic |
| TGTTCTTCTTGCTGCTGCTA+AGG | 0.379583 | 1_4:+2694957 | Msa0143680:CDS |
| TGGTGAAAGCTGGGGAGAAA+TGG | 0.379583 | 1_4:+2697757 | Msa0143680:CDS |
| GATAAGTAATAAGTTTCAAT+TGG | 0.388393 | 1_4:-2698234 | None:intergenic |
| AGTTGCACCCAATTTATTCC+AGG | 0.399506 | 1_4:-2693715 | None:intergenic |
| CACAAGGAGCTGGTGAAAGC+TGG | 0.403742 | 1_4:+2697747 | Msa0143680:intron |
| GCTGCAGCTTTCACTGTCCC+TGG | 0.408383 | 1_4:+2697840 | Msa0143680:CDS |
| TTAGCAGCAGCAAGAAGAAC+AGG | 0.410668 | 1_4:-2694955 | None:intergenic |
| TAGAAACCACAGAGAAGAAA+AGG | 0.416389 | 1_4:-2698058 | None:intergenic |
| TTCCAAGTGGTAGTGGATAT+GGG | 0.416844 | 1_4:+2695291 | Msa0143680:CDS |
| AAATGCCGTGTAGACGCATT+TGG | 0.419337 | 1_4:+2697059 | Msa0143680:CDS |
| AATTCCATGTTGCACTTGGC+AGG | 0.419647 | 1_4:+2697083 | Msa0143680:CDS |
| ATCAGAACTTAGAGAGGCTT+CGG | 0.421195 | 1_4:+2696839 | Msa0143680:CDS |
| CTAATATGAGTAAGATTCTC+TGG | 0.424630 | 1_4:-2693669 | None:intergenic |
| TCACTTGCTATGCTCTTAAA+GGG | 0.427681 | 1_4:+2698101 | Msa0143680:CDS |
| CATTGGTCTTCATAGATAAC+AGG | 0.427879 | 1_4:-2694921 | None:intergenic |
| ACCTTAGTGGCAATGACTTA+AGG | 0.429666 | 1_4:-2698016 | None:intergenic |
| AGATGCAAAGAGAAATTCTA+TGG | 0.430747 | 1_4:+2697156 | Msa0143680:CDS |
| TTCACGTTGCGGTAGTTGCT+GGG | 0.432176 | 1_4:+2694731 | Msa0143680:CDS |
| TCTCTTTGCATCTGCATAGC+AGG | 0.438079 | 1_4:-2697146 | None:intergenic |
| GAGATTTGGAACAGGAAGAA+TGG | 0.441267 | 1_4:+2693612 | Msa0143680:CDS |
| CCACAAATCACACTTTGAAT+CGG | 0.443086 | 1_4:+2695223 | Msa0143680:CDS |
| TCTGTGTTTCCAAGTGGTAG+TGG | 0.443413 | 1_4:+2695284 | Msa0143680:CDS |
| CTGAATATGAGATTTGGAAC+AGG | 0.444534 | 1_4:+2693604 | Msa0143680:CDS |
| GTTCTTCTTGCTGCTGCTAA+GGG | 0.445513 | 1_4:+2694958 | Msa0143680:CDS |
| GACGGAACTAGAACGATAAC+AGG | 0.453839 | 1_4:-2698167 | None:intergenic |
| CGATTCAAAGTGTGATTTGT+GGG | 0.456154 | 1_4:-2695222 | None:intergenic |
| TATAGCGAAGTGTATGACTA+TGG | 0.458675 | 1_4:+2694870 | Msa0143680:CDS |
| TCCTTAAGTCATTGCCACTA+AGG | 0.460081 | 1_4:+2698015 | Msa0143680:CDS |
| TCTTGTGGGACATGGTCTGT+GGG | 0.464135 | 1_4:+2693539 | Msa0143680:CDS |
| TTTCAGCGTAACGAGCCGTT+AGG | 0.467061 | 1_4:-2697986 | None:intergenic |
| GTTTATAGATGCAATGAGAA+AGG | 0.467103 | 1_4:+2696905 | Msa0143680:CDS |
| TTGTGGGCAAGAGGCATTTG+AGG | 0.467341 | 1_4:-2695206 | None:intergenic |
| CTTGTTAGAAACTATCTTGT+GGG | 0.467922 | 1_4:+2693525 | Msa0143680:intron |
| ATGCGTGCCAATGCGTATAA+TGG | 0.471182 | 1_4:-2695257 | None:intergenic |
| TGTGCAGCGATTTATATTGA+AGG | 0.474499 | 1_4:-2694612 | None:intergenic |
| TTCATATTGCTAAAGAAGCC+TGG | 0.477292 | 1_4:+2693697 | Msa0143680:CDS |
| AAAGAAGCCTGGAATAAATT+GGG | 0.481257 | 1_4:+2693708 | Msa0143680:CDS |
| ACAAGGAGCTGGTGAAAGCT+GGG | 0.481894 | 1_4:+2697748 | Msa0143680:intron |
| GGTGAAAGCTGGGGAGAAAT+GGG | 0.482292 | 1_4:+2697758 | Msa0143680:CDS |
| AGCTGGTTCATTTACTCTTG+TGG | 0.482801 | 1_4:+2697791 | Msa0143680:CDS |
| AGATTTGGAACAGGAAGAAT+GGG | 0.485550 | 1_4:+2693613 | Msa0143680:CDS |
| TCAGCTCAGCAACAAGAGCT+AGG | 0.486371 | 1_4:-2694834 | None:intergenic |
| CATAGCAAGTGAAGCACAGA+AGG | 0.486804 | 1_4:-2698090 | None:intergenic |
| ATCTTGTGGGACATGGTCTG+TGG | 0.486835 | 1_4:+2693538 | Msa0143680:CDS |
| GTGAAGAAATTGGTGAAGGA+AGG | 0.488215 | 1_4:+2694766 | Msa0143680:CDS |
| TTGCATCTGCATAGCAGGAC+CGG | 0.495069 | 1_4:-2697141 | None:intergenic |
| ATATATTCCACATCCTCTAT+GGG | 0.496055 | 1_4:+2694697 | Msa0143680:CDS |
| TTGTCTTGATTGTTTCCACC+AGG | 0.496117 | 1_4:-2697858 | None:intergenic |
| TTGTACACCGTTGGAAGACC+TGG | 0.502955 | 1_4:+2695011 | Msa0143680:CDS |
| TTTATAGATGCAATGAGAAA+GGG | 0.503030 | 1_4:+2696906 | Msa0143680:CDS |
| ATCATGTATGAGTTCGAAAA+CGG | 0.503307 | 1_4:-2697006 | None:intergenic |
| TGCGATAATTATCATCGGCC+AGG | 0.509460 | 1_4:-2695029 | None:intergenic |
| TGGCAATTCCATGTTGCACT+TGG | 0.511014 | 1_4:+2697079 | Msa0143680:CDS |
| TCTTTACCGTTGTACACCGT+TGG | 0.515694 | 1_4:+2695002 | Msa0143680:CDS |
| TCTGATCTTGATCGTAGATC+CGG | 0.515841 | 1_4:+2697122 | Msa0143680:CDS |
| CGCACCAATTTCAGGAATAG+AGG | 0.521001 | 1_4:-2693571 | None:intergenic |
| CAAGTTGGACTTGAGACATA+GGG | 0.524705 | 1_4:+2691750 | Msa0143680:CDS |
| GCTCTTGTTGCTGAGCTGAC+CGG | 0.526277 | 1_4:+2694838 | Msa0143680:CDS |
| CCGATTCAAAGTGTGATTTG+TGG | 0.526820 | 1_4:-2695223 | None:intergenic |
| TGCAAACTCGTTTATTAAGA+GGG | 0.527286 | 1_4:+2694663 | Msa0143680:CDS |
| TGTGATGTCGTGCAAGAACA+AGG | 0.535047 | 1_4:-2697889 | None:intergenic |
| GAGGCATTTGAGGAAATCGT+TGG | 0.537554 | 1_4:-2695196 | None:intergenic |
| GGTCCTCCCCATAGAGGATG+TGG | 0.539677 | 1_4:-2694704 | None:intergenic |
| AAGAGAAATTCTATGGTTCA+AGG | 0.541072 | 1_4:+2697163 | Msa0143680:CDS |
| TGTGCAACCATTATACGCAT+TGG | 0.543058 | 1_4:+2695250 | Msa0143680:CDS |
| AGTGCGAAAAGTAACCTTAG+TGG | 0.548121 | 1_4:-2698029 | None:intergenic |
| ATGTTGCAAGCAGCAAAGCA+TGG | 0.548691 | 1_4:+2696873 | Msa0143680:CDS |
| AACCCATATCCACTACCACT+TGG | 0.557493 | 1_4:-2695293 | None:intergenic |
| AAGTGTGATTTGTGGGCAAG+AGG | 0.558162 | 1_4:-2695215 | None:intergenic |
| TCTTGTTAGAAACTATCTTG+TGG | 0.559427 | 1_4:+2693524 | Msa0143680:intron |
| GCAAGTTGGACTTGAGACAT+AGG | 0.562622 | 1_4:+2691749 | Msa0143680:CDS |
| AGAAACTATCTTGTGGGACA+TGG | 0.562860 | 1_4:+2693531 | Msa0143680:intron |
| AGAAACCACAGAGAAGAAAA+GGG | 0.563826 | 1_4:-2698057 | None:intergenic |
| ACCTTGCTCAATATCTGGAT+CGG | 0.564323 | 1_4:-2693757 | None:intergenic |
| TGTTGCAAGCAGCAAAGCAT+GGG | 0.564523 | 1_4:+2696874 | Msa0143680:CDS |
| GCTTTAATTTGCAGGTGTGG+TGG | 0.564757 | 1_4:+2694579 | Msa0143680:intron |
| AGAGGAGGTATGTCGCAAGT+TGG | 0.567384 | 1_4:+2691735 | Msa0143680:CDS |
| ACTTGAAAATCTCAAGGAAG+AGG | 0.567742 | 1_4:-2698199 | None:intergenic |
| TAAGGAATCAGAACTTAGAG+AGG | 0.568613 | 1_4:+2696833 | Msa0143680:CDS |
| GCCGATGATAATTATCGCAA+TGG | 0.574637 | 1_4:+2695033 | Msa0143680:CDS |
| TGAAGAAATTGGTGAAGGAA+GGG | 0.574748 | 1_4:+2694767 | Msa0143680:CDS |
| CAGCTCAGCAACAAGAGCTA+GGG | 0.580236 | 1_4:-2694833 | None:intergenic |
| AAATGGGCAAAAGATACAGC+TGG | 0.580445 | 1_4:+2697774 | Msa0143680:CDS |
| TTATCTATGAAGACCAATGA+TGG | 0.582929 | 1_4:+2694925 | Msa0143680:CDS |
| TAAGAAAATATCACGGTCAG+AGG | 0.584733 | 1_4:+2694897 | Msa0143680:CDS |
| TGCGGTAGTTGCTGGGCACG+AGG | 0.589759 | 1_4:+2694738 | Msa0143680:CDS |
| TCTCTTCATTGGAATCCTAA+CGG | 0.591072 | 1_4:+2697971 | Msa0143680:CDS |
| CTGTAGACTTGAAAATCTCA+AGG | 0.594097 | 1_4:-2698205 | None:intergenic |
| GCAGCTTTCACTGTCCCTGG+TGG | 0.601445 | 1_4:+2697843 | Msa0143680:CDS |
| AGGAAGAGGCGCAATTGTGA+CGG | 0.607133 | 1_4:-2698185 | None:intergenic |
| AGTATATTGAGAGCGGTGAG+TGG | 0.609550 | 1_4:+2694635 | Msa0143680:CDS |
| ACCATTGCGATAATTATCAT+CGG | 0.609954 | 1_4:-2695034 | None:intergenic |
| TAGAACGATAACAGGAACAC+TGG | 0.611619 | 1_4:-2698159 | None:intergenic |
| AACTACCGCAACGTGAAGAA+CGG | 0.612033 | 1_4:-2694725 | None:intergenic |
| AATTGCCAAATGCGTCTACA+CGG | 0.612652 | 1_4:-2697064 | None:intergenic |
| TTAGGATTCCAATGAAGAGA+AGG | 0.614556 | 1_4:-2697968 | None:intergenic |
| ATGCCTTCTGTGTTTCCAAG+TGG | 0.615562 | 1_4:+2695278 | Msa0143680:CDS |
| TGCAACTGTAAATGGACGGA+AGG | 0.618113 | 1_4:+2697028 | Msa0143680:CDS |
| CTTGTGGGACATGGTCTGTG+GGG | 0.619674 | 1_4:+2693540 | Msa0143680:CDS |
| CTACCACTTGGAAACACAGA+AGG | 0.622603 | 1_4:-2695281 | None:intergenic |
| AAGAACGGTCCTCCCCATAG+AGG | 0.622685 | 1_4:-2694710 | None:intergenic |
| GCCGATCCAGATATTGAGCA+AGG | 0.624425 | 1_4:+2693756 | Msa0143680:CDS |
| AATTGTGAAGAAATTGGTGA+AGG | 0.625256 | 1_4:+2694762 | Msa0143680:CDS |
| ATATCCTGCCAAGTGCAACA+TGG | 0.627952 | 1_4:-2697087 | None:intergenic |
| AATGCAAACTTTGAGAGAGG+AGG | 0.628075 | 1_4:+2691720 | None:intergenic |
| GGTGGAAACAATCAAGACAA+TGG | 0.629811 | 1_4:+2697861 | Msa0143680:CDS |
| ATGATGCAACTGTAAATGGA+CGG | 0.638038 | 1_4:+2697024 | Msa0143680:CDS |
| CATATCATTCAACTAACATG+TGG | 0.643061 | 1_4:+2693645 | Msa0143680:CDS |
| CAAGGAGCTGGTGAAAGCTG+GGG | 0.651622 | 1_4:+2697749 | Msa0143680:intron |
| TGTCTTGATTGTTTCCACCA+GGG | 0.652150 | 1_4:-2697857 | None:intergenic |
| GAGGACCGTTCTTCACGTTG+CGG | 0.655029 | 1_4:+2694720 | Msa0143680:CDS |
| GTGATGTCGTGCAAGAACAA+GGG | 0.659099 | 1_4:-2697888 | None:intergenic |
| ATTCCACATCCTCTATGGGG+AGG | 0.660094 | 1_4:+2694701 | Msa0143680:CDS |
| TAGCAGCAGCAAGAAGAACA+GGG | 0.665135 | 1_4:-2694954 | None:intergenic |
| TTGGAACAGGAAGAATGGGA+AGG | 0.668429 | 1_4:+2693617 | Msa0143680:CDS |
| TATTTCAAGAGCTACACGGT+AGG | 0.669157 | 1_4:-2696778 | None:intergenic |
| GTGAAAATGAAAGACAATCG+AGG | 0.669964 | 1_4:+2694802 | Msa0143680:CDS |
| TCATCGGCCAGGTCTTCCAA+CGG | 0.671668 | 1_4:-2695018 | None:intergenic |
| TGGTATATAAGAAAATATCA+CGG | 0.677081 | 1_4:+2694890 | Msa0143680:CDS |
| CTACGATCAAGATCAGAGGA+AGG | 0.678354 | 1_4:-2697116 | None:intergenic |
| CTGCACAAGTATATTGAGAG+CGG | 0.680709 | 1_4:+2694628 | Msa0143680:CDS |
| GGATCTACGATCAAGATCAG+AGG | 0.680818 | 1_4:-2697120 | None:intergenic |
| TCAATATTTCAAGAGCTACA+CGG | 0.684421 | 1_4:-2696782 | None:intergenic |
| GGTCTTCCAACGGTGTACAA+CGG | 0.687225 | 1_4:-2695008 | None:intergenic |
| TATATTCCACATCCTCTATG+GGG | 0.688060 | 1_4:+2694698 | Msa0143680:CDS |
| AAGTTGGACTTGAGACATAG+GGG | 0.690927 | 1_4:+2691751 | Msa0143680:CDS |
| AGTTGGACTTGAGACATAGG+GGG | 0.727109 | 1_4:+2691752 | Msa0143680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGCTTATAATTAAAAA+CGG | + | chr1_4:2692187-2692206 | Msa0143680:intron | 10.0% |
| !! | TAATAATTATGTTAGTATAA+TGG | - | chr1_4:2692664-2692683 | None:intergenic | 10.0% |
| !! | TCTTAAATACTTATAATATT+AGG | + | chr1_4:2694493-2694512 | Msa0143680:intron | 10.0% |
| !! | CTTAAATACTTATAATATTA+GGG | + | chr1_4:2694494-2694513 | Msa0143680:intron | 10.0% |
| !! | ACTTTATAAAAGAAATTTAA+AGG | + | chr1_4:2695533-2695552 | Msa0143680:intron | 10.0% |
| !!! | TTTATTTTTGGTTTCATTTT+AGG | + | chr1_4:2691862-2691881 | Msa0143680:intron | 15.0% |
| !!! | TTATTTTTGGTTTCATTTTA+GGG | + | chr1_4:2691863-2691882 | Msa0143680:intron | 15.0% |
| !!! | GAAAGTGTATATATTAATTT+AGG | + | chr1_4:2692429-2692448 | Msa0143680:intron | 15.0% |
| !!! | TTTTATATAGATGATATATG+AGG | + | chr1_4:2692462-2692481 | Msa0143680:intron | 15.0% |
| !! | TTTATATAGATGATATATGA+GGG | + | chr1_4:2692463-2692482 | Msa0143680:intron | 15.0% |
| !! | TTATTAAACAGTAAAAGTTT+AGG | + | chr1_4:2694337-2694356 | Msa0143680:intron | 15.0% |
| !!! | ATTCAAATGTACTTATTTTT+GGG | - | chr1_4:2694430-2694449 | None:intergenic | 15.0% |
| !!! | TATTCAAATGTACTTATTTT+TGG | - | chr1_4:2694431-2694450 | None:intergenic | 15.0% |
| !! | ATTTAAAGGTGATTTATAAA+AGG | + | chr1_4:2695547-2695566 | Msa0143680:intron | 15.0% |
| !! | TTTAAAGGTGATTTATAAAA+GGG | + | chr1_4:2695548-2695567 | Msa0143680:intron | 15.0% |
| !!! | CAAAAGTTTGTATTTTATAA+AGG | - | chr1_4:2695590-2695609 | None:intergenic | 15.0% |
| !! | TACTTCCAATAATATATTAA+AGG | + | chr1_4:2695666-2695685 | Msa0143680:intron | 15.0% |
| !! | AAACTCCTTTAATATATTAT+TGG | - | chr1_4:2695674-2695693 | None:intergenic | 15.0% |
| !! | TAATTAATTAATCACAAAGA+GGG | - | chr1_4:2696694-2696713 | None:intergenic | 15.0% |
| !! | TTAATTAATTAATCACAAAG+AGG | - | chr1_4:2696695-2696714 | None:intergenic | 15.0% |
| !!! | AAAAACTAAATTTGAAATTC+TGG | + | chr1_4:2697452-2697471 | Msa0143680:intron | 15.0% |
| !! | ATATTTATTAGTTAGCATCA+CGG | - | chr1_4:2691902-2691921 | None:intergenic | 20.0% |
| !! | TGCTTATAATTAAAAACAGA+GGG | - | chr1_4:2692076-2692095 | None:intergenic | 20.0% |
| !! | TTGCTTATAATTAAAAACAG+AGG | - | chr1_4:2692077-2692096 | None:intergenic | 20.0% |
| !!! | ATAAGCAAATTTGACTTTTT+AGG | - | chr1_4:2692089-2692108 | None:intergenic | 20.0% |
| !! | TTTATATCATATCTATCATC+AGG | - | chr1_4:2692251-2692270 | None:intergenic | 20.0% |
| !! | TATATACACTTTCAATTCAT+TGG | - | chr1_4:2692422-2692441 | None:intergenic | 20.0% |
| !! | TTATATAGATGATATATGAG+GGG | + | chr1_4:2692464-2692483 | Msa0143680:intron | 20.0% |
| !! | ATAACTAACTAATTAACTGA+TGG | - | chr1_4:2692787-2692806 | None:intergenic | 20.0% |
| !!! | TTTTTTTCACATTTATTCCA+TGG | - | chr1_4:2692913-2692932 | None:intergenic | 20.0% |
| !!! | AATACTTTGAAAGAAACAAA+GGG | - | chr1_4:2693200-2693219 | None:intergenic | 20.0% |
| !! | ACATATTTAGAAAGACAAAA+TGG | - | chr1_4:2693353-2693372 | None:intergenic | 20.0% |
| !! | TACACATTAATCTATTCTTT+GGG | + | chr1_4:2693803-2693822 | Msa0143680:intron | 20.0% |
| !! | AACTATGTCTAATATGTATA+GGG | - | chr1_4:2693845-2693864 | None:intergenic | 20.0% |
| !! | AAACTATGTCTAATATGTAT+AGG | - | chr1_4:2693846-2693865 | None:intergenic | 20.0% |
| !! | TAGTTTCTAAATGTATTGAA+AGG | + | chr1_4:2693860-2693879 | Msa0143680:intron | 20.0% |
| !!! | ACACTTTATTTATTATGAAG+TGG | - | chr1_4:2694079-2694098 | None:intergenic | 20.0% |
| !!! | TTTGAATATTGTGATTTTAG+TGG | + | chr1_4:2694443-2694462 | Msa0143680:intron | 20.0% |
| !!! | TTGAATATTGTGATTTTAGT+GGG | + | chr1_4:2694444-2694463 | Msa0143680:intron | 20.0% |
| !!! | CATTTATTTTCCTTACTAAT+TGG | - | chr1_4:2694521-2694540 | None:intergenic | 20.0% |
| !! | CAATTAGTAAGGAAAATAAA+TGG | + | chr1_4:2694519-2694538 | Msa0143680:intron | 20.0% |
| !! | TGGTATATAAGAAAATATCA+CGG | + | chr1_4:2694890-2694909 | Msa0143680:CDS | 20.0% |
| !!! | TTGTTAATCCTTGTTTAAAT+AGG | + | chr1_4:2696586-2696605 | Msa0143680:intron | 20.0% |
| !! | CTAATATACCTATTTAAACA+AGG | - | chr1_4:2696597-2696616 | None:intergenic | 20.0% |
| !!! | GATTGATAATTATTAATCCT+TGG | + | chr1_4:2696616-2696635 | Msa0143680:intron | 20.0% |
| !! | ATTATCAATCTAATATACCA+AGG | - | chr1_4:2696636-2696655 | None:intergenic | 20.0% |
| !! | AATTAATTAATCACAAAGAG+GGG | - | chr1_4:2696693-2696712 | None:intergenic | 20.0% |
| !!! | TCAAATTTAGTTTTTGAAGT+TGG | - | chr1_4:2697447-2697466 | None:intergenic | 20.0% |
| !! | ATACATGACATTTAAATAAG+TGG | + | chr1_4:2697515-2697534 | Msa0143680:intron | 20.0% |
| !! | ATGAATAAGATAATAATGTG+TGG | - | chr1_4:2697573-2697592 | None:intergenic | 20.0% |
| !! | ATAAAAAACTACCCTACTTT+TGG | - | chr1_4:2691847-2691866 | None:intergenic | 25.0% |
| !!! | GTAGGGTAGTTTTTTATTTT+TGG | + | chr1_4:2691850-2691869 | Msa0143680:intron | 25.0% |
| !!! | TTTTATTTCTTCTGACAACA+TGG | + | chr1_4:2691922-2691941 | Msa0143680:intron | 25.0% |
| ! | AACATGGATCTTTAATAAGT+TGG | + | chr1_4:2691938-2691957 | Msa0143680:intron | 25.0% |
| ! | GATGTATGTGATTCATATTA+TGG | - | chr1_4:2692141-2692160 | None:intergenic | 25.0% |
| ! | TTGCTTATAATTAAAAACGG+AGG | + | chr1_4:2692190-2692209 | Msa0143680:intron | 25.0% |
| ! | TGCTTATAATTAAAAACGGA+GGG | + | chr1_4:2692191-2692210 | Msa0143680:intron | 25.0% |
| ! | GATATAAACTTATAATCCAC+AGG | + | chr1_4:2692263-2692282 | Msa0143680:intron | 25.0% |
| ! | ACATTACTCAAATGTTAGAA+TGG | - | chr1_4:2692503-2692522 | None:intergenic | 25.0% |
| ! | ATCTATTGATGAATATTCGT+TGG | + | chr1_4:2692694-2692713 | Msa0143680:intron | 25.0% |
| ! | TTGGAATTTCATTTCTTAAC+AGG | + | chr1_4:2692713-2692732 | Msa0143680:intron | 25.0% |
| !! | TTCTATTAATGGGTAAGTTT+CGG | - | chr1_4:2692979-2692998 | None:intergenic | 25.0% |
| !! | GAATACTTTGAAAGAAACAA+AGG | - | chr1_4:2693201-2693220 | None:intergenic | 25.0% |
| !! | TTCAAAGTATTCTGACTATA+CGG | + | chr1_4:2693209-2693228 | Msa0143680:intron | 25.0% |
| ! | GTACACATTAATCTATTCTT+TGG | + | chr1_4:2693802-2693821 | Msa0143680:intron | 25.0% |
| ! | ATTGTATGAGATGTTACAAA+TGG | + | chr1_4:2694167-2694186 | Msa0143680:intron | 25.0% |
| !! | CAATGAGGAAAGATTTTTAA+AGG | + | chr1_4:2694232-2694251 | Msa0143680:intron | 25.0% |
| ! | AGCTAATGTTTATTAGCAAT+AGG | + | chr1_4:2694259-2694278 | Msa0143680:intron | 25.0% |
| ! | ATGTTTATTAGCAATAGGTA+AGG | + | chr1_4:2694264-2694283 | Msa0143680:intron | 25.0% |
| ! | TGTTTATTAGCAATAGGTAA+GGG | + | chr1_4:2694265-2694284 | Msa0143680:intron | 25.0% |
| ! | TTGTAACTAAGAACAATCAA+CGG | + | chr1_4:2694376-2694395 | Msa0143680:intron | 25.0% |
| ! | TCGATTCAATATTGTATCTT+AGG | + | chr1_4:2695155-2695174 | Msa0143680:intron | 25.0% |
| ! | AATTTGAAAAGTAAGCGAAA+TGG | - | chr1_4:2695373-2695392 | None:intergenic | 25.0% |
| !!! | ATTTCGCTTACTTTTCAAAT+TGG | + | chr1_4:2695372-2695391 | Msa0143680:intron | 25.0% |
| !!! | TTTCGCTTACTTTTCAAATT+GGG | + | chr1_4:2695373-2695392 | Msa0143680:intron | 25.0% |
| ! | TGCAAACTTATAATGTTACA+CGG | + | chr1_4:2695423-2695442 | Msa0143680:intron | 25.0% |
| !! | TTGTATTTTATAAAGGACAC+TGG | - | chr1_4:2695583-2695602 | None:intergenic | 25.0% |
| ! | AATGAATACTATATGTGTAG+TGG | - | chr1_4:2695636-2695655 | None:intergenic | 25.0% |
| ! | GAGTAAATAATGAATGAGAT+TGG | + | chr1_4:2695898-2695917 | Msa0143680:intron | 25.0% |
| ! | ATGAACACACATATATAACA+GGG | - | chr1_4:2696465-2696484 | None:intergenic | 25.0% |
| ! | TATGAACACACATATATAAC+AGG | - | chr1_4:2696466-2696485 | None:intergenic | 25.0% |
| !!! | CTTTTACGCATTTTTTTTTC+AGG | + | chr1_4:2696496-2696515 | Msa0143680:intron | 25.0% |
| ! | GAATGATTGTACTTACAATA+AGG | - | chr1_4:2696668-2696687 | None:intergenic | 25.0% |
| !! | TATATTTTCCTTATTCCTGA+TGG | - | chr1_4:2696744-2696763 | None:intergenic | 25.0% |
| ! | TTTATAGATGCAATGAGAAA+GGG | + | chr1_4:2696906-2696925 | Msa0143680:CDS | 25.0% |
| ! | GCCATTGATAAAAATAAAAG+AGG | + | chr1_4:2696948-2696967 | Msa0143680:intron | 25.0% |
| !!! | GCCTCTTTTATTTTTATCAA+TGG | - | chr1_4:2696952-2696971 | None:intergenic | 25.0% |
| ! | AATGTCATGTATCTCAAAAT+TGG | - | chr1_4:2697507-2697526 | None:intergenic | 25.0% |
| !! | CATATTGTGAAATTTTGTGA+AGG | + | chr1_4:2697641-2697660 | Msa0143680:intron | 25.0% |
| TCAAATTGGAATTGAGACAT+AGG | + | chr1_4:2691781-2691800 | Msa0143680:intron | 30.0% | |
| CAAATTGGAATTGAGACATA+GGG | + | chr1_4:2691782-2691801 | Msa0143680:intron | 30.0% | |
| AGTGGAAAATATAACTGTTG+CGG | - | chr1_4:2691994-2692013 | None:intergenic | 30.0% | |
| GAAATTCACACAAGATAAAG+TGG | - | chr1_4:2692012-2692031 | None:intergenic | 30.0% | |
| TATAATCCACAGGTCAAATT+TGG | + | chr1_4:2692273-2692292 | Msa0143680:intron | 30.0% | |
| AATGAGACTTGTCAAGATTA+AGG | - | chr1_4:2692631-2692650 | None:intergenic | 30.0% | |
| ! | TTATCTCTTTTATCCACCTT+GGG | + | chr1_4:2693032-2693051 | Msa0143680:intron | 30.0% |
| !!! | CACTCGGTTTTTAAAGTTTA+AGG | + | chr1_4:2693248-2693267 | Msa0143680:intron | 30.0% |
| TCTTGTTAGAAACTATCTTG+TGG | + | chr1_4:2693524-2693543 | Msa0143680:intron | 30.0% | |
| CTTGTTAGAAACTATCTTGT+GGG | + | chr1_4:2693525-2693544 | Msa0143680:intron | 30.0% | |
| CTAAGACTGAATATGAGATT+TGG | + | chr1_4:2693598-2693617 | Msa0143680:CDS | 30.0% | |
| CATATCATTCAACTAACATG+TGG | + | chr1_4:2693645-2693664 | Msa0143680:CDS | 30.0% | |
| CTAATATGAGTAAGATTCTC+TGG | - | chr1_4:2693672-2693691 | None:intergenic | 30.0% | |
| TAAAGAAGCCTGGAATAAAT+TGG | + | chr1_4:2693707-2693726 | Msa0143680:CDS | 30.0% | |
| AAAGAAGCCTGGAATAAATT+GGG | + | chr1_4:2693708-2693727 | Msa0143680:CDS | 30.0% | |
| TATATACCTTGCTCAATATC+TGG | - | chr1_4:2693765-2693784 | None:intergenic | 30.0% | |
| ATAAATAAAGTGTGTGAGTG+AGG | + | chr1_4:2694086-2694105 | Msa0143680:intron | 30.0% | |
| TGAGATGTTACAAATGGTAT+TGG | + | chr1_4:2694173-2694192 | Msa0143680:intron | 30.0% | |
| !! | TGAGGAAAGATTTTTAAAGG+AGG | + | chr1_4:2694235-2694254 | Msa0143680:intron | 30.0% |
| TAGTTACAACGCTTAAGATT+GGG | - | chr1_4:2694365-2694384 | None:intergenic | 30.0% | |
| TTAGTTACAACGCTTAAGAT+TGG | - | chr1_4:2694366-2694385 | None:intergenic | 30.0% | |
| ATATTAGGGTCCAATTAGTA+AGG | + | chr1_4:2694508-2694527 | Msa0143680:intron | 30.0% | |
| !! | ACATACATGCTTTAATTTGC+AGG | + | chr1_4:2694571-2694590 | Msa0143680:intron | 30.0% |
| ATGCAAACTCGTTTATTAAG+AGG | + | chr1_4:2694662-2694681 | Msa0143680:CDS | 30.0% | |
| TGCAAACTCGTTTATTAAGA+GGG | + | chr1_4:2694663-2694682 | Msa0143680:CDS | 30.0% | |
| AATATATTCCACATCCTCTA+TGG | + | chr1_4:2694696-2694715 | Msa0143680:CDS | 30.0% | |
| ATATATTCCACATCCTCTAT+GGG | + | chr1_4:2694697-2694716 | Msa0143680:CDS | 30.0% | |
| AATTGTGAAGAAATTGGTGA+AGG | + | chr1_4:2694762-2694781 | Msa0143680:CDS | 30.0% | |
| TTATCTATGAAGACCAATGA+TGG | + | chr1_4:2694925-2694944 | Msa0143680:CDS | 30.0% | |
| ACCATTGCGATAATTATCAT+CGG | - | chr1_4:2695037-2695056 | None:intergenic | 30.0% | |
| TGTATCACTGCAGAAATATT+TGG | + | chr1_4:2695075-2695094 | Msa0143680:intron | 30.0% | |
| TCAATATTGTATCTTAGGTG+TGG | + | chr1_4:2695160-2695179 | Msa0143680:intron | 30.0% | |
| GGAGATGTTAAATTAAGTGT+TGG | - | chr1_4:2695615-2695634 | None:intergenic | 30.0% | |
| ! | AGTGAAGTTTGATGAGTTTT+TGG | - | chr1_4:2695787-2695806 | None:intergenic | 30.0% |
| AGACCAACTTTACAAAATTG+AGG | + | chr1_4:2695830-2695849 | Msa0143680:intron | 30.0% | |
| ! | ACTCCTCAATTTTGTAAAGT+TGG | - | chr1_4:2695836-2695855 | None:intergenic | 30.0% |
| !! | GAGTATCGTTCCAATTTTAT+CGG | + | chr1_4:2695852-2695871 | Msa0143680:intron | 30.0% |
| GGTAATCTCAAAACTAAAAG+CGG | - | chr1_4:2696007-2696026 | None:intergenic | 30.0% | |
| !! | AGAGAAGTGCATGAATTTTA+CGG | + | chr1_4:2696031-2696050 | Msa0143680:intron | 30.0% |
| !!! | TTTGTGTTGTTTTTCCTCTT+TGG | - | chr1_4:2696083-2696102 | None:intergenic | 30.0% |
| !! | AAGCTCTAGAAAGAAGAATT+AGG | - | chr1_4:2696136-2696155 | None:intergenic | 30.0% |
| ! | GTTTTTCTACAATATGCGAA+TGG | + | chr1_4:2696175-2696194 | Msa0143680:intron | 30.0% |
| CTGAGGATTATTAATCTTCT+CGG | + | chr1_4:2696203-2696222 | Msa0143680:intron | 30.0% | |
| ! | TCACATGTCATTTCAGAATT+CGG | + | chr1_4:2696537-2696556 | Msa0143680:intron | 30.0% |
| ! | TTATTCCTGATGGATACAAT+TGG | - | chr1_4:2696734-2696753 | None:intergenic | 30.0% |
| AATTGTATCCATCAGGAATA+AGG | + | chr1_4:2696733-2696752 | Msa0143680:intron | 30.0% | |
| TCAATATTTCAAGAGCTACA+CGG | - | chr1_4:2696785-2696804 | None:intergenic | 30.0% | |
| CCTTAAACTCTTGAATTCTT+TGG | - | chr1_4:2696818-2696837 | None:intergenic | 30.0% | |
| CCAAAGAATTCAAGAGTTTA+AGG | + | chr1_4:2696815-2696834 | Msa0143680:CDS | 30.0% | |
| GTTTATAGATGCAATGAGAA+AGG | + | chr1_4:2696905-2696924 | Msa0143680:CDS | 30.0% | |
| ATCATGTATGAGTTCGAAAA+CGG | - | chr1_4:2697009-2697028 | None:intergenic | 30.0% | |
| ATACATGATGCAACTGTAAA+TGG | + | chr1_4:2697020-2697039 | Msa0143680:CDS | 30.0% | |
| AGATGCAAAGAGAAATTCTA+TGG | + | chr1_4:2697156-2697175 | Msa0143680:CDS | 30.0% | |
| AAGAGAAATTCTATGGTTCA+AGG | + | chr1_4:2697163-2697182 | Msa0143680:CDS | 30.0% | |
| TTTCACAATATGTTATAGCG+CGG | - | chr1_4:2697633-2697652 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCTTCCTTACACTT+GGG | - | chr1_4:2697687-2697706 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCTTCCTTACACT+TGG | - | chr1_4:2697688-2697707 | None:intergenic | 30.0% |
| ! | TCTTTTCACTTCTTCAACTT+CGG | + | chr1_4:2697944-2697963 | Msa0143680:CDS | 30.0% |
| AAAATATAACTGTTGCGGGA+CGG | - | chr1_4:2691989-2692008 | None:intergenic | 35.0% | |
| GTGGAAAATATAACTGTTGC+GGG | - | chr1_4:2691993-2692012 | None:intergenic | 35.0% | |
| TACTTTCCAAATTTGACCTG+TGG | - | chr1_4:2692282-2692301 | None:intergenic | 35.0% | |
| ACATTGATGTAGCGTTACAT+CGG | + | chr1_4:2692333-2692352 | Msa0143680:intron | 35.0% | |
| ! | CTTATCTCTTTTATCCACCT+TGG | + | chr1_4:2693031-2693050 | Msa0143680:intron | 35.0% |
| !! | CTGTAAGTTTGACTCGATTT+TGG | + | chr1_4:2693094-2693113 | Msa0143680:intron | 35.0% |
| AAAGAAACAAAGGGAGCAAA+CGG | - | chr1_4:2693191-2693210 | None:intergenic | 35.0% | |
| GAAAACGATTATAGTGTCAG+TGG | - | chr1_4:2693300-2693319 | None:intergenic | 35.0% | |
| ! | CTGAATATGAGATTTGGAAC+AGG | + | chr1_4:2693604-2693623 | Msa0143680:CDS | 35.0% |
| ! | AGATTTGGAACAGGAAGAAT+GGG | + | chr1_4:2693613-2693632 | Msa0143680:CDS | 35.0% |
| TTCATATTGCTAAAGAAGCC+TGG | + | chr1_4:2693697-2693716 | Msa0143680:CDS | 35.0% | |
| ! | TAAGTGTCTTTTGTGAGTCA+TGG | + | chr1_4:2693896-2693915 | Msa0143680:intron | 35.0% |
| ATTAAGTCCTGTCTCATAGT+CGG | - | chr1_4:2693928-2693947 | None:intergenic | 35.0% | |
| !! | AAAAGAATTGTGTTGACTCG+TGG | + | chr1_4:2694122-2694141 | Msa0143680:intron | 35.0% |
| !! | AAAGAATTGTGTTGACTCGT+GGG | + | chr1_4:2694123-2694142 | Msa0143680:intron | 35.0% |
| AGTTACAACGCTTAAGATTG+GGG | - | chr1_4:2694364-2694383 | None:intergenic | 35.0% | |
| AAGAACAATCAACGGCATTT+AGG | + | chr1_4:2694384-2694403 | Msa0143680:intron | 35.0% | |
| TGTGCAGCGATTTATATTGA+AGG | - | chr1_4:2694615-2694634 | None:intergenic | 35.0% | |
| TATATTCCACATCCTCTATG+GGG | + | chr1_4:2694698-2694717 | Msa0143680:CDS | 35.0% | |
| CGAGGAAATTGTGAAGAAAT+TGG | + | chr1_4:2694756-2694775 | Msa0143680:CDS | 35.0% | |
| TGAAGAAATTGGTGAAGGAA+GGG | + | chr1_4:2694767-2694786 | Msa0143680:CDS | 35.0% | |
| GTGAAAATGAAAGACAATCG+AGG | + | chr1_4:2694802-2694821 | Msa0143680:CDS | 35.0% | |
| TATAGCGAAGTGTATGACTA+TGG | + | chr1_4:2694870-2694889 | Msa0143680:CDS | 35.0% | |
| TAAGAAAATATCACGGTCAG+AGG | + | chr1_4:2694897-2694916 | Msa0143680:CDS | 35.0% | |
| !! | CATTGGTCTTCATAGATAAC+AGG | - | chr1_4:2694924-2694943 | None:intergenic | 35.0% |
| ! | CGATTCAAAGTGTGATTTGT+GGG | - | chr1_4:2695225-2695244 | None:intergenic | 35.0% |
| CCACAAATCACACTTTGAAT+CGG | + | chr1_4:2695223-2695242 | Msa0143680:CDS | 35.0% | |
| ! | CTTTTCAAATTGGGTCATCT+CGG | + | chr1_4:2695382-2695401 | Msa0143680:intron | 35.0% |
| AATTCATGCACTTCTCTTTC+AGG | - | chr1_4:2696028-2696047 | None:intergenic | 35.0% | |
| !! | GAGAAGTGCATGAATTTTAC+GGG | + | chr1_4:2696032-2696051 | Msa0143680:intron | 35.0% |
| TCTTGCAAATATTGCCAAAG+AGG | + | chr1_4:2696066-2696085 | Msa0143680:intron | 35.0% | |
| !! | ATCTTCTCGGTTGTTTCTTT+AGG | + | chr1_4:2696216-2696235 | Msa0143680:intron | 35.0% |
| ! | GTTTCTTTAGGAAGGTTATG+TGG | + | chr1_4:2696228-2696247 | Msa0143680:intron | 35.0% |
| AAGATCACAGATCACAACAA+GGG | - | chr1_4:2696367-2696386 | None:intergenic | 35.0% | |
| AAAGATCACAGATCACAACA+AGG | - | chr1_4:2696368-2696387 | None:intergenic | 35.0% | |
| TCGGTACTATTAAAGTTCTC+TGG | + | chr1_4:2696556-2696575 | Msa0143680:intron | 35.0% | |
| TAATTAATCACAAAGAGGGG+AGG | - | chr1_4:2696690-2696709 | None:intergenic | 35.0% | |
| TAAGGAATCAGAACTTAGAG+AGG | + | chr1_4:2696833-2696852 | Msa0143680:CDS | 35.0% | |
| ! | TTTTATCAATGGCCCATAAG+AGG | - | chr1_4:2696941-2696960 | None:intergenic | 35.0% |
| ATGATGCAACTGTAAATGGA+CGG | + | chr1_4:2697024-2697043 | Msa0143680:CDS | 35.0% | |
| GCTTATATGTTGGAACAAAG+AGG | + | chr1_4:2697242-2697261 | Msa0143680:intron | 35.0% | |
| GAGAAGAGATTAGAGAGTTT+AGG | + | chr1_4:2697303-2697322 | Msa0143680:intron | 35.0% | |
| GTTGGTTGTGAAGTTGTTAT+AGG | - | chr1_4:2697429-2697448 | None:intergenic | 35.0% | |
| TATAGCGCGGTTAAAATTCA+TGG | - | chr1_4:2697620-2697639 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCCTTACACTTG+GGG | - | chr1_4:2697686-2697705 | None:intergenic | 35.0% |
| TTAGGATTCCAATGAAGAGA+AGG | - | chr1_4:2697971-2697990 | None:intergenic | 35.0% | |
| TCTCTTCATTGGAATCCTAA+CGG | + | chr1_4:2697971-2697990 | Msa0143680:CDS | 35.0% | |
| AGAAACCACAGAGAAGAAAA+GGG | - | chr1_4:2698060-2698079 | None:intergenic | 35.0% | |
| TAGAAACCACAGAGAAGAAA+AGG | - | chr1_4:2698061-2698080 | None:intergenic | 35.0% | |
| !! | TTCACTTGCTATGCTCTTAA+AGG | + | chr1_4:2698100-2698119 | Msa0143680:CDS | 35.0% |
| !! | TCACTTGCTATGCTCTTAAA+GGG | + | chr1_4:2698101-2698120 | Msa0143680:CDS | 35.0% |
| ACTTGAAAATCTCAAGGAAG+AGG | - | chr1_4:2698202-2698221 | None:intergenic | 35.0% | |
| CTGTAGACTTGAAAATCTCA+AGG | - | chr1_4:2698208-2698227 | None:intergenic | 35.0% | |
| ! | CAAGTTGGACTTGAGACATA+GGG | + | chr1_4:2691750-2691769 | Msa0143680:CDS | 40.0% |
| AAGTTGGACTTGAGACATAG+GGG | + | chr1_4:2691751-2691770 | Msa0143680:CDS | 40.0% | |
| ! | ATAGGGGGTATGTCTCAAAT+TGG | + | chr1_4:2691767-2691786 | Msa0143680:intron | 40.0% |
| ACATAGGGTATGTCTCAAGT+TGG | + | chr1_4:2691797-2691816 | Msa0143680:intron | 40.0% | |
| !! | TCAAGTTGGACTTGAGACAT+AGG | + | chr1_4:2691811-2691830 | Msa0143680:intron | 40.0% |
| ! | CAAGTTGGACTTGAGACATA+GGG | + | chr1_4:2691750-2691769 | Msa0143680:CDS | 40.0% |
| AAGTTGGACTTGAGACATAG+GGG | + | chr1_4:2691751-2691770 | Msa0143680:CDS | 40.0% | |
| GGGTCAACTTTCCAAAAGTA+GGG | + | chr1_4:2691833-2691852 | Msa0143680:intron | 40.0% | |
| AAATATAACTGTTGCGGGAC+GGG | - | chr1_4:2691988-2692007 | None:intergenic | 40.0% | |
| TTAACAGGCGACGATGATTT+GGG | + | chr1_4:2692728-2692747 | Msa0143680:intron | 40.0% | |
| TAGGATTGATGAGAGAGGAT+GGG | - | chr1_4:2692865-2692884 | None:intergenic | 40.0% | |
| ATAGGATTGATGAGAGAGGA+TGG | - | chr1_4:2692866-2692885 | None:intergenic | 40.0% | |
| TCTCTCATCAATCCTATGTC+CGG | + | chr1_4:2692869-2692888 | Msa0143680:intron | 40.0% | |
| ! | TCTTTTATCCACCTTGGGTT+TGG | + | chr1_4:2693037-2693056 | Msa0143680:intron | 40.0% |
| CTAAACTATGTCCAAACCCA+AGG | - | chr1_4:2693051-2693070 | None:intergenic | 40.0% | |
| ! | TGCTCTAACTTTTCTCACGT+TGG | + | chr1_4:2693117-2693136 | Msa0143680:intron | 40.0% |
| TGGAACAAGAGAAAGCAACA+TGG | - | chr1_4:2693333-2693352 | None:intergenic | 40.0% | |
| TTCTACTGCTTCACAATCTG+TGG | - | chr1_4:2693428-2693447 | None:intergenic | 40.0% | |
| TTGTGAAGCAGTAGAATGAC+AGG | + | chr1_4:2693432-2693451 | Msa0143680:intron | 40.0% | |
| ! | CCAGTTTTCGTAGTTGTCTT+TGG | - | chr1_4:2693499-2693518 | None:intergenic | 40.0% |
| CCAAAGACAACTACGAAAAC+TGG | + | chr1_4:2693496-2693515 | Msa0143680:intron | 40.0% | |
| AGAAACTATCTTGTGGGACA+TGG | + | chr1_4:2693531-2693550 | Msa0143680:intron | 40.0% | |
| GTGACCTCTATTCCTGAAAT+TGG | + | chr1_4:2693567-2693586 | Msa0143680:CDS | 40.0% | |
| ! | GAGATTTGGAACAGGAAGAA+TGG | + | chr1_4:2693612-2693631 | Msa0143680:CDS | 40.0% |
| AGTTGCACCCAATTTATTCC+AGG | - | chr1_4:2693718-2693737 | None:intergenic | 40.0% | |
| ACCTTGCTCAATATCTGGAT+CGG | - | chr1_4:2693760-2693779 | None:intergenic | 40.0% | |
| !! | AAGAATTGTGTTGACTCGTG+GGG | + | chr1_4:2694124-2694143 | Msa0143680:intron | 40.0% |
| TAGGTAAGGGAGAAGCAATA+AGG | + | chr1_4:2694278-2694297 | Msa0143680:intron | 40.0% | |
| AATCAACGGCATTTAGGCTT+TGG | + | chr1_4:2694390-2694409 | Msa0143680:intron | 40.0% | |
| ATCAACGGCATTTAGGCTTT+GGG | + | chr1_4:2694391-2694410 | Msa0143680:intron | 40.0% | |
| !! | CATGCTTTAATTTGCAGGTG+TGG | + | chr1_4:2694576-2694595 | Msa0143680:intron | 40.0% |
| CTGCACAAGTATATTGAGAG+CGG | + | chr1_4:2694628-2694647 | Msa0143680:CDS | 40.0% | |
| GTGAAGAAATTGGTGAAGGA+AGG | + | chr1_4:2694766-2694785 | Msa0143680:CDS | 40.0% | |
| CTTCGCTATATTCGTGTTTC+CGG | - | chr1_4:2694860-2694879 | None:intergenic | 40.0% | |
| AACAGGGATTTCACCATCAT+TGG | - | chr1_4:2694941-2694960 | None:intergenic | 40.0% | |
| GCCGATGATAATTATCGCAA+TGG | + | chr1_4:2695033-2695052 | Msa0143680:CDS | 40.0% | |
| ! | CTGCAGAAATATTTGGTTCG+TGG | + | chr1_4:2695082-2695101 | Msa0143680:intron | 40.0% |
| CCGATTCAAAGTGTGATTTG+TGG | - | chr1_4:2695226-2695245 | None:intergenic | 40.0% | |
| TGTGCAACCATTATACGCAT+TGG | + | chr1_4:2695250-2695269 | Msa0143680:CDS | 40.0% | |
| !! | TTTCCAAGTGGTAGTGGATA+TGG | + | chr1_4:2695290-2695309 | Msa0143680:CDS | 40.0% |
| !! | TTCCAAGTGGTAGTGGATAT+GGG | + | chr1_4:2695291-2695310 | Msa0143680:CDS | 40.0% |
| TTACTCCTCAATTGTCCCTT+CGG | - | chr1_4:2695884-2695903 | None:intergenic | 40.0% | |
| !! | AAGCGGAAGTAGATTAGTCT+TGG | - | chr1_4:2695990-2696009 | None:intergenic | 40.0% |
| CAACACAAAGCTTCTTTCGT+AGG | + | chr1_4:2696094-2696113 | Msa0143680:intron | 40.0% | |
| CAAAGCTTCTTTCGTAGGTA+TGG | + | chr1_4:2696099-2696118 | Msa0143680:intron | 40.0% | |
| !! | TCTCGGTTGTTTCTTTAGGA+AGG | + | chr1_4:2696220-2696239 | Msa0143680:intron | 40.0% |
| ! | CTTTAGGAAGGTTATGTGGA+CGG | + | chr1_4:2696232-2696251 | Msa0143680:intron | 40.0% |
| TTTATCGCCAGTAAAGCAGT+TGG | + | chr1_4:2696263-2696282 | Msa0143680:intron | 40.0% | |
| TTATCGCCAGTAAAGCAGTT+GGG | + | chr1_4:2696264-2696283 | Msa0143680:intron | 40.0% | |
| AACTTACCCAACTGCTTTAC+TGG | - | chr1_4:2696273-2696292 | None:intergenic | 40.0% | |
| TCTGGATTACAAGACGTATC+CGG | - | chr1_4:2696415-2696434 | None:intergenic | 40.0% | |
| TCTTGTAATCCAGACCCTAA+GGG | + | chr1_4:2696421-2696440 | Msa0143680:intron | 40.0% | |
| GCTTTGTATTCACACCCTTA+GGG | - | chr1_4:2696438-2696457 | None:intergenic | 40.0% | |
| CACACATATATAACAGGGAC+TGG | - | chr1_4:2696460-2696479 | None:intergenic | 40.0% | |
| ! | TCCTGATGGATACAATTGGA+GGG | - | chr1_4:2696730-2696749 | None:intergenic | 40.0% |
| ! | TTCCTGATGGATACAATTGG+AGG | - | chr1_4:2696731-2696750 | None:intergenic | 40.0% |
| TATTTCAAGAGCTACACGGT+AGG | - | chr1_4:2696781-2696800 | None:intergenic | 40.0% | |
| ATCAGAACTTAGAGAGGCTT+CGG | + | chr1_4:2696839-2696858 | Msa0143680:CDS | 40.0% | |
| ! | GTTCGAAAACGGCTTTTCTA+CGG | - | chr1_4:2696998-2697017 | None:intergenic | 40.0% |
| AATTGCCAAATGCGTCTACA+CGG | - | chr1_4:2697067-2697086 | None:intergenic | 40.0% | |
| TTGCACTTGGCAGGATATTT+AGG | + | chr1_4:2697092-2697111 | Msa0143680:CDS | 40.0% | |
| TGCACTTGGCAGGATATTTA+GGG | + | chr1_4:2697093-2697112 | Msa0143680:CDS | 40.0% | |
| TCTGATCTTGATCGTAGATC+CGG | + | chr1_4:2697122-2697141 | Msa0143680:CDS | 40.0% | |
| ! | GTGAAATTTTGTGAAGGCAG+TGG | + | chr1_4:2697647-2697666 | Msa0143680:intron | 40.0% |
| ! | AAATTTTGTGAAGGCAGTGG+AGG | + | chr1_4:2697650-2697669 | Msa0143680:intron | 40.0% |
| CTTTCTGTAAATAGCTCACG+AGG | - | chr1_4:2697726-2697745 | None:intergenic | 40.0% | |
| GCTATTTACAGAAAGCCACA+AGG | + | chr1_4:2697731-2697750 | Msa0143680:intron | 40.0% | |
| AAATGGGCAAAAGATACAGC+TGG | + | chr1_4:2697774-2697793 | Msa0143680:CDS | 40.0% | |
| ! | AGCTGGTTCATTTACTCTTG+TGG | + | chr1_4:2697791-2697810 | Msa0143680:CDS | 40.0% |
| TGTCTTGATTGTTTCCACCA+GGG | - | chr1_4:2697860-2697879 | None:intergenic | 40.0% | |
| TTGTCTTGATTGTTTCCACC+AGG | - | chr1_4:2697861-2697880 | None:intergenic | 40.0% | |
| GGTGGAAACAATCAAGACAA+TGG | + | chr1_4:2697861-2697880 | Msa0143680:CDS | 40.0% | |
| TCCTTAAGTCATTGCCACTA+AGG | + | chr1_4:2698015-2698034 | Msa0143680:CDS | 40.0% | |
| ACCTTAGTGGCAATGACTTA+AGG | - | chr1_4:2698019-2698038 | None:intergenic | 40.0% | |
| AGTGCGAAAAGTAACCTTAG+TGG | - | chr1_4:2698032-2698051 | None:intergenic | 40.0% | |
| TAGAACGATAACAGGAACAC+TGG | - | chr1_4:2698162-2698181 | None:intergenic | 40.0% | |
| ! | GCAAGTTGGACTTGAGACAT+AGG | + | chr1_4:2691749-2691768 | Msa0143680:CDS | 45.0% |
| AGTTGGACTTGAGACATAGG+GGG | + | chr1_4:2691752-2691771 | Msa0143680:CDS | 45.0% | |
| GGGGTCAACTTTCCAAAAGT+AGG | + | chr1_4:2691832-2691851 | Msa0143680:intron | 45.0% | |
| AATATAACTGTTGCGGGACG+GGG | - | chr1_4:2691987-2692006 | None:intergenic | 45.0% | |
| CTTAACAGGCGACGATGATT+TGG | + | chr1_4:2692727-2692746 | Msa0143680:intron | 45.0% | |
| GGACATAGGATTGATGAGAG+AGG | - | chr1_4:2692870-2692889 | None:intergenic | 45.0% | |
| TGTCTCATAACACCGGACAT+AGG | - | chr1_4:2692884-2692903 | None:intergenic | 45.0% | |
| !! | ATGTCCGGTGTTATGAGACA+TGG | + | chr1_4:2692884-2692903 | Msa0143680:intron | 45.0% |
| GATGCCATGTCTCATAACAC+CGG | - | chr1_4:2692891-2692910 | None:intergenic | 45.0% | |
| GTTATGAGACATGGCATCCA+TGG | + | chr1_4:2692893-2692912 | Msa0143680:intron | 45.0% | |
| AACTATGTCCAAACCCAAGG+TGG | - | chr1_4:2693048-2693067 | None:intergenic | 45.0% | |
| AACAAAGGGAGCAAACGGAT+TGG | - | chr1_4:2693186-2693205 | None:intergenic | 45.0% | |
| AAACTGAGCACTCACACACT+CGG | + | chr1_4:2693232-2693251 | Msa0143680:intron | 45.0% | |
| TCGTAGTTGTCTTTGGTCAG+TGG | - | chr1_4:2693492-2693511 | None:intergenic | 45.0% | |
| CGCACCAATTTCAGGAATAG+AGG | - | chr1_4:2693574-2693593 | None:intergenic | 45.0% | |
| TTAGAACGCGCACCAATTTC+AGG | - | chr1_4:2693582-2693601 | None:intergenic | 45.0% | |
| TTGGAACAGGAAGAATGGGA+AGG | + | chr1_4:2693617-2693636 | Msa0143680:CDS | 45.0% | |
| GACTAAACCGACTATGAGAC+AGG | + | chr1_4:2693918-2693937 | Msa0143680:intron | 45.0% | |
| !! | AGAATTGTGTTGACTCGTGG+GGG | + | chr1_4:2694125-2694144 | Msa0143680:intron | 45.0% |
| !! | GCTTTAATTTGCAGGTGTGG+TGG | + | chr1_4:2694579-2694598 | Msa0143680:intron | 45.0% |
| AGTATATTGAGAGCGGTGAG+TGG | + | chr1_4:2694635-2694654 | Msa0143680:CDS | 45.0% | |
| AACTACCGCAACGTGAAGAA+CGG | - | chr1_4:2694728-2694747 | None:intergenic | 45.0% | |
| TAGCAGCAGCAAGAAGAACA+GGG | - | chr1_4:2694957-2694976 | None:intergenic | 45.0% | |
| TTAGCAGCAGCAAGAAGAAC+AGG | - | chr1_4:2694958-2694977 | None:intergenic | 45.0% | |
| TGTTCTTCTTGCTGCTGCTA+AGG | + | chr1_4:2694957-2694976 | Msa0143680:CDS | 45.0% | |
| GTTCTTCTTGCTGCTGCTAA+GGG | + | chr1_4:2694958-2694977 | Msa0143680:CDS | 45.0% | |
| TCTTTACCGTTGTACACCGT+TGG | + | chr1_4:2695002-2695021 | Msa0143680:CDS | 45.0% | |
| TGCGATAATTATCATCGGCC+AGG | - | chr1_4:2695032-2695051 | None:intergenic | 45.0% | |
| ! | GAGGCATTTGAGGAAATCGT+TGG | - | chr1_4:2695199-2695218 | None:intergenic | 45.0% |
| ! | AAGTGTGATTTGTGGGCAAG+AGG | - | chr1_4:2695218-2695237 | None:intergenic | 45.0% |
| ATGCGTGCCAATGCGTATAA+TGG | - | chr1_4:2695260-2695279 | None:intergenic | 45.0% | |
| ATGCCTTCTGTGTTTCCAAG+TGG | + | chr1_4:2695278-2695297 | Msa0143680:CDS | 45.0% | |
| CTACCACTTGGAAACACAGA+AGG | - | chr1_4:2695284-2695303 | None:intergenic | 45.0% | |
| TCTGTGTTTCCAAGTGGTAG+TGG | + | chr1_4:2695284-2695303 | Msa0143680:CDS | 45.0% | |
| AACCCATATCCACTACCACT+TGG | - | chr1_4:2695296-2695315 | None:intergenic | 45.0% | |
| TCGGGGACATCCGATAAAAT+TGG | - | chr1_4:2695865-2695884 | None:intergenic | 45.0% | |
| ! | ATTTTATCGGATGTCCCCGA+AGG | + | chr1_4:2695865-2695884 | Msa0143680:intron | 45.0% |
| ! | TTTTATCGGATGTCCCCGAA+GGG | + | chr1_4:2695866-2695885 | Msa0143680:intron | 45.0% |
| TACTCCTCAATTGTCCCTTC+GGG | - | chr1_4:2695883-2695902 | None:intergenic | 45.0% | |
| ATATGCGAATGGCGATTCTG+AGG | + | chr1_4:2696186-2696205 | Msa0143680:intron | 45.0% | |
| GTCTTGTAATCCAGACCCTA+AGG | + | chr1_4:2696420-2696439 | Msa0143680:intron | 45.0% | |
| ! | GGCTTTGTATTCACACCCTT+AGG | - | chr1_4:2696439-2696458 | None:intergenic | 45.0% |
| TCCCTCCAATTGTATCCATC+AGG | + | chr1_4:2696726-2696745 | Msa0143680:intron | 45.0% | |
| ATGTTGCAAGCAGCAAAGCA+TGG | + | chr1_4:2696873-2696892 | Msa0143680:CDS | 45.0% | |
| TGTTGCAAGCAGCAAAGCAT+GGG | + | chr1_4:2696874-2696893 | Msa0143680:CDS | 45.0% | |
| AGGGTAATCCTGACCTCTTA+TGG | + | chr1_4:2696925-2696944 | Msa0143680:intron | 45.0% | |
| GGGTAATCCTGACCTCTTAT+GGG | + | chr1_4:2696926-2696945 | Msa0143680:intron | 45.0% | |
| TGCAACTGTAAATGGACGGA+AGG | + | chr1_4:2697028-2697047 | Msa0143680:CDS | 45.0% | |
| AAATGCCGTGTAGACGCATT+TGG | + | chr1_4:2697059-2697078 | Msa0143680:CDS | 45.0% | |
| TGGCAATTCCATGTTGCACT+TGG | + | chr1_4:2697079-2697098 | Msa0143680:CDS | 45.0% | |
| AATTCCATGTTGCACTTGGC+AGG | + | chr1_4:2697083-2697102 | Msa0143680:CDS | 45.0% | |
| ATATCCTGCCAAGTGCAACA+TGG | - | chr1_4:2697090-2697109 | None:intergenic | 45.0% | |
| CTACGATCAAGATCAGAGGA+AGG | - | chr1_4:2697119-2697138 | None:intergenic | 45.0% | |
| GGATCTACGATCAAGATCAG+AGG | - | chr1_4:2697123-2697142 | None:intergenic | 45.0% | |
| TCTCTTTGCATCTGCATAGC+AGG | - | chr1_4:2697149-2697168 | None:intergenic | 45.0% | |
| CATGTATGTATGCGAGTGAG+AGG | - | chr1_4:2697216-2697235 | None:intergenic | 45.0% | |
| CATGCGTGCAGCTTATATGT+TGG | + | chr1_4:2697232-2697251 | Msa0143680:intron | 45.0% | |
| AATTGTGCACCCCAAGTGTA+AGG | + | chr1_4:2697674-2697693 | Msa0143680:intron | 45.0% | |
| GTGATGTCGTGCAAGAACAA+GGG | - | chr1_4:2697891-2697910 | None:intergenic | 45.0% | |
| TGTGATGTCGTGCAAGAACA+AGG | - | chr1_4:2697892-2697911 | None:intergenic | 45.0% | |
| ACTTCGGTCCTTCTCTTCAT+TGG | + | chr1_4:2697960-2697979 | Msa0143680:CDS | 45.0% | |
| ! | CATTGCCCTTTTCTTCTCTG+TGG | + | chr1_4:2698052-2698071 | Msa0143680:CDS | 45.0% |
| CATAGCAAGTGAAGCACAGA+AGG | - | chr1_4:2698093-2698112 | None:intergenic | 45.0% | |
| GACGGAACTAGAACGATAAC+AGG | - | chr1_4:2698170-2698189 | None:intergenic | 45.0% | |
| !!! | ATTAATTTTTTTCTATTAAT+GGG | - | chr1_4:2692989-2693008 | None:intergenic | 5.0% |
| !!! | TATTAATTTTTTTCTATTAA+TGG | - | chr1_4:2692990-2693009 | None:intergenic | 5.0% |
| ! | AGAGGAGGTATGTCGCAAGT+TGG | + | chr1_4:2691735-2691754 | Msa0143680:CDS | 50.0% |
| ATATAACTGTTGCGGGACGG+GGG | - | chr1_4:2691986-2692005 | None:intergenic | 50.0% | |
| !! | AAGGGAGCAAACGGATTGGA+AGG | - | chr1_4:2693182-2693201 | None:intergenic | 50.0% |
| ATCTTGTGGGACATGGTCTG+TGG | + | chr1_4:2693538-2693557 | Msa0143680:CDS | 50.0% | |
| TCTTGTGGGACATGGTCTGT+GGG | + | chr1_4:2693539-2693558 | Msa0143680:CDS | 50.0% | |
| GCCGATCCAGATATTGAGCA+AGG | + | chr1_4:2693756-2693775 | Msa0143680:CDS | 50.0% | |
| AAACCTCTCCCAAGACGATG+TGG | + | chr1_4:2694196-2694215 | Msa0143680:intron | 50.0% | |
| AAACCACATCGTCTTGGGAG+AGG | - | chr1_4:2694202-2694221 | None:intergenic | 50.0% | |
| TCTCCCAAGACGATGTGGTT+TGG | + | chr1_4:2694201-2694220 | Msa0143680:intron | 50.0% | |
| CTCCCAAGACGATGTGGTTT+GGG | + | chr1_4:2694202-2694221 | Msa0143680:intron | 50.0% | |
| TCCCAAGACGATGTGGTTTG+GGG | + | chr1_4:2694203-2694222 | Msa0143680:intron | 50.0% | |
| TCCCCAAACCACATCGTCTT+GGG | - | chr1_4:2694207-2694226 | None:intergenic | 50.0% | |
| !! | AACGGCATTTAGGCTTTGGG+TGG | + | chr1_4:2694394-2694413 | Msa0143680:intron | 50.0% |
| ATTCCACATCCTCTATGGGG+AGG | + | chr1_4:2694701-2694720 | Msa0143680:CDS | 50.0% | |
| TTCACGTTGCGGTAGTTGCT+GGG | + | chr1_4:2694731-2694750 | Msa0143680:CDS | 50.0% | |
| CAGCTCAGCAACAAGAGCTA+GGG | - | chr1_4:2694836-2694855 | None:intergenic | 50.0% | |
| TCAGCTCAGCAACAAGAGCT+AGG | - | chr1_4:2694837-2694856 | None:intergenic | 50.0% | |
| GGTCTTCCAACGGTGTACAA+CGG | - | chr1_4:2695011-2695030 | None:intergenic | 50.0% | |
| TTGTACACCGTTGGAAGACC+TGG | + | chr1_4:2695011-2695030 | Msa0143680:CDS | 50.0% | |
| !! | TTGTGGGCAAGAGGCATTTG+AGG | - | chr1_4:2695209-2695228 | None:intergenic | 50.0% |
| ACTCCTCAATTGTCCCTTCG+GGG | - | chr1_4:2695882-2695901 | None:intergenic | 50.0% | |
| TCACAACAAGGGTTCGCACA+AGG | - | chr1_4:2696356-2696375 | None:intergenic | 50.0% | |
| TCCGTTTGTGTGCTTTGCAC+CGG | + | chr1_4:2696393-2696412 | Msa0143680:intron | 50.0% | |
| TCCGGTGCAAAGCACACAAA+CGG | - | chr1_4:2696397-2696416 | None:intergenic | 50.0% | |
| GTATTCACACCCTTAGGGTC+TGG | - | chr1_4:2696433-2696452 | None:intergenic | 50.0% | |
| TCAATGGCCCATAAGAGGTC+AGG | - | chr1_4:2696936-2696955 | None:intergenic | 50.0% | |
| TTGCATCTGCATAGCAGGAC+CGG | - | chr1_4:2697144-2697163 | None:intergenic | 50.0% | |
| TACAGAAAGCCACAAGGAGC+TGG | + | chr1_4:2697737-2697756 | Msa0143680:intron | 50.0% | |
| ACAAGGAGCTGGTGAAAGCT+GGG | + | chr1_4:2697748-2697767 | Msa0143680:intron | 50.0% | |
| TGGTGAAAGCTGGGGAGAAA+TGG | + | chr1_4:2697757-2697776 | Msa0143680:CDS | 50.0% | |
| GGTGAAAGCTGGGGAGAAAT+GGG | + | chr1_4:2697758-2697777 | Msa0143680:CDS | 50.0% | |
| TTTCAGCGTAACGAGCCGTT+AGG | - | chr1_4:2697989-2698008 | None:intergenic | 50.0% | |
| ! | AGGAAGAGGCGCAATTGTGA+CGG | - | chr1_4:2698188-2698207 | None:intergenic | 50.0% |
| ! | GGAACAAGCATTGCAGCGAG+TGG | + | chr1_4:2693453-2693472 | Msa0143680:intron | 55.0% |
| CTTGTGGGACATGGTCTGTG+GGG | + | chr1_4:2693540-2693559 | Msa0143680:CDS | 55.0% | |
| GTCCCCAAACCACATCGTCT+TGG | - | chr1_4:2694208-2694227 | None:intergenic | 55.0% | |
| GGTTTGGGGACGAAGCAATG+AGG | + | chr1_4:2694217-2694236 | Msa0143680:intron | 55.0% | |
| AAGAACGGTCCTCCCCATAG+AGG | - | chr1_4:2694713-2694732 | None:intergenic | 55.0% | |
| GAGGACCGTTCTTCACGTTG+CGG | + | chr1_4:2694720-2694739 | Msa0143680:CDS | 55.0% | |
| CTTCACGTTGCGGTAGTTGC+TGG | + | chr1_4:2694730-2694749 | Msa0143680:CDS | 55.0% | |
| GCTCTTGTTGCTGAGCTGAC+CGG | + | chr1_4:2694838-2694857 | Msa0143680:CDS | 55.0% | |
| TCATCGGCCAGGTCTTCCAA+CGG | - | chr1_4:2695021-2695040 | None:intergenic | 55.0% | |
| TGTCCCCGAAGGGACAATTG+AGG | + | chr1_4:2695876-2695895 | Msa0143680:intron | 55.0% | |
| CAGCTTTCACCAGCTCCTTG+TGG | - | chr1_4:2697749-2697768 | None:intergenic | 55.0% | |
| CACAAGGAGCTGGTGAAAGC+TGG | + | chr1_4:2697747-2697766 | Msa0143680:intron | 55.0% | |
| CAAGGAGCTGGTGAAAGCTG+GGG | + | chr1_4:2697749-2697768 | Msa0143680:intron | 55.0% | |
| GGTCCTCCCCATAGAGGATG+TGG | - | chr1_4:2694707-2694726 | None:intergenic | 60.0% | |
| GCTGCAGCTTTCACTGTCCC+TGG | + | chr1_4:2697840-2697859 | Msa0143680:CDS | 60.0% | |
| GCAGCTTTCACTGTCCCTGG+TGG | + | chr1_4:2697843-2697862 | Msa0143680:CDS | 60.0% | |
| TGCGGTAGTTGCTGGGCACG+AGG | + | chr1_4:2694738-2694757 | Msa0143680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2691721 | 2698241 | 2691721 | ID=Msa0143680;Name=Msa0143680 |
| chr1_4 | mRNA | 2691721 | 2698241 | 2691721 | ID=Msa0143680-mRNA-1;Parent=Msa0143680;Name=Msa0143680-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0|0|0.87|0.28|0.37|8|0|598 |
| chr1_4 | exon | 2691721 | 2691773 | 2691721 | ID=Msa0143680-mRNA-1:exon:1212;Parent=Msa0143680-mRNA-1 |
| chr1_4 | exon | 2693533 | 2693777 | 2693533 | ID=Msa0143680-mRNA-1:exon:1213;Parent=Msa0143680-mRNA-1 |
| chr1_4 | exon | 2694593 | 2694823 | 2694593 | ID=Msa0143680-mRNA-1:exon:1214;Parent=Msa0143680-mRNA-1 |
| chr1_4 | exon | 2694833 | 2695054 | 2694833 | ID=Msa0143680-mRNA-1:exon:1215;Parent=Msa0143680-mRNA-1 |
| chr1_4 | exon | 2695177 | 2695338 | 2695177 | ID=Msa0143680-mRNA-1:exon:1216;Parent=Msa0143680-mRNA-1 |
| chr1_4 | exon | 2696748 | 2696927 | 2696748 | ID=Msa0143680-mRNA-1:exon:1217;Parent=Msa0143680-mRNA-1 |
| chr1_4 | exon | 2696970 | 2697184 | 2696970 | ID=Msa0143680-mRNA-1:exon:1218;Parent=Msa0143680-mRNA-1 |
| chr1_4 | exon | 2697753 | 2698241 | 2697753 | ID=Msa0143680-mRNA-1:exon:1219;Parent=Msa0143680-mRNA-1 |
| chr1_4 | CDS | 2691721 | 2691773 | 2691721 | ID=Msa0143680-mRNA-1:cds;Parent=Msa0143680-mRNA-1 |
| chr1_4 | CDS | 2693533 | 2693777 | 2693533 | ID=Msa0143680-mRNA-1:cds;Parent=Msa0143680-mRNA-1 |
| chr1_4 | CDS | 2694593 | 2694823 | 2694593 | ID=Msa0143680-mRNA-1:cds;Parent=Msa0143680-mRNA-1 |
| chr1_4 | CDS | 2694833 | 2695054 | 2694833 | ID=Msa0143680-mRNA-1:cds;Parent=Msa0143680-mRNA-1 |
| chr1_4 | CDS | 2695177 | 2695338 | 2695177 | ID=Msa0143680-mRNA-1:cds;Parent=Msa0143680-mRNA-1 |
| chr1_4 | CDS | 2696748 | 2696927 | 2696748 | ID=Msa0143680-mRNA-1:cds;Parent=Msa0143680-mRNA-1 |
| chr1_4 | CDS | 2696970 | 2697184 | 2696970 | ID=Msa0143680-mRNA-1:cds;Parent=Msa0143680-mRNA-1 |
| chr1_4 | CDS | 2697753 | 2698241 | 2697753 | ID=Msa0143680-mRNA-1:cds;Parent=Msa0143680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
