AlfalfaGEDB | Msa0841170

M. sativa cultivar zhongmu-4 / Msa0841170

KEGG: -
GO: -
PFAM: PF13637.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841170	XP_024640501.2	65.079	693	126	9	33	613	26	714	0.0	857

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841170	A0A396HTM3	65.629	707	113	11	33	612	30	733	0.0	850

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0048950	Msa0841170	0.809625	1.725253e-50	-8.615850e-47
Msa0059880	Msa0841170	0.863631	2.168794e-64	-8.615850e-47
Msa0072030	Msa0841170	0.802191	6.308178e-49	-8.615850e-47
Msa0143680	Msa0841170	0.919879	2.590772e-87	-8.615850e-47
Msa0143710	Msa0841170	0.928411	2.999675e-92	-8.615850e-47
Msa0143740	Msa0841170	0.942420	7.421070e-102	-8.615850e-47
Msa0143770	Msa0841170	0.937344	4.033515e-98	-8.615850e-47
Msa0150910	Msa0841170	0.832873	7.372664e-56	-8.615850e-47
Msa0163340	Msa0841170	0.804663	1.938603e-49	-8.615850e-47
Msa0190670	Msa0841170	0.818168	2.256330e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841170	MtrunA17_Chr5g0410171	65.629	707	113	11	33	612	30	733	0.0	850
Msa0841170	MtrunA17_Chr5g0410341	85.460	337	5	2	322	614	411	747	0.0	562
Msa0841170	MtrunA17_Chr5g0410341	87.302	315	16	4	33	323	28	342	0.0	555
Msa0841170	MtrunA17_Chr5g0410201	74.924	327	38	2	330	612	1	327	2.59e-167	479
Msa0841170	MtrunA17_Chr5g0410271	74.540	326	39	2	332	613	2	327	6.53e-165	473
Msa0841170	MtrunA17_Chr6g0457101	39.912	679	292	16	33	613	28	688	7.45e-140	423
Msa0841170	MtrunA17_Chr5g0410461	51.762	369	124	7	294	610	96	462	1.32e-107	332
Msa0841170	MtrunA17_Chr6g0456141	49.555	337	122	5	322	613	51	384	6.04e-100	310
Msa0841170	MtrunA17_Chr5g0410371	57.095	296	77	4	363	610	1	294	5.52e-99	304
Msa0841170	MtrunA17_Chr6g0456101	34.771	719	312	24	33	606	28	734	7.04e-99	318

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841170	AT3G18670.1	35.334	583	275	19	104	614	35	587	2.67e-95	305
Msa0841170	AT3G18670.2	33.280	628	282	19	104	614	35	642	1.08e-92	299
Msa0841170	AT5G04690.3	30.397	579	305	13	116	610	67	631	4.01e-64	223
Msa0841170	AT5G04690.1	31.194	561	306	15	115	610	66	611	1.33e-62	218
Msa0841170	AT5G04690.2	29.798	594	305	14	115	610	66	645	5.74e-62	217
Msa0841170	AT5G04700.1	29.202	589	302	14	124	610	80	655	4.82e-59	209
Msa0841170	AT5G04680.3	28.253	584	308	16	124	610	67	636	1.28e-51	189
Msa0841170	AT5G04680.4	28.020	596	308	16	124	610	67	650	3.13e-50	185
Msa0841170	AT5G04730.1	29.050	537	277	16	172	610	58	588	7.16e-47	174
Msa0841170	AT5G04680.2	28.518	533	262	15	185	610	7	527	1.12e-46	173

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Find 150 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCCTGGAATAAATT+GGG	0.481257	5_4:-17172380	Msa0841170:CDS
AAATGCCGTGTAGACGCATT+TGG	0.419337	5_4:-17169032	Msa0841170:CDS
AAATGGGCAAAAGATACAGC+TGG	0.580445	5_4:-17168317	Msa0841170:CDS
AACAGGGATTTCACCATCAT+TGG	0.379563	5_4:+17171164	None:intergenic
AACCCATATCCACTACCACT+TGG	0.557493	5_4:+17170809	None:intergenic
AACTACCGCAACGTGAAGAA+CGG	0.612033	5_4:+17171377	None:intergenic
AAGAACGGTCCTCCCCATAG+AGG	0.622685	5_4:+17171392	None:intergenic
AAGAGAAATTCTATGGTTCA+AGG	0.541072	5_4:-17168928	Msa0841170:intron
AAGTGTGATTTGTGGGCAAG+AGG	0.558162	5_4:+17170887	None:intergenic
AATATATTCCACATCCTCTA+TGG	0.260429	5_4:-17171406	Msa0841170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAATTCACACAAGATAAAG+TGG	+	chr5_4:17168129-17168148	None:intergenic	30.0%
ATGAGACTTGTCAAAGATTA+AGG	+	chr5_4:17168739-17168758	None:intergenic	30.0%
TGGGACATTCTATTATATGT+CGG	-	chr5_4:17168856-17168875	Msa0841170:intron	30.0%
TCTTGTTAGAAACTATCTTG+TGG	-	chr5_4:17169654-17169673	Msa0841170:intron	30.0%
CTTGTTAGAAACTATCTTGT+GGG	-	chr5_4:17169655-17169674	Msa0841170:intron	30.0%
CTAAGACTGAATATGAGATT+TGG	-	chr5_4:17169728-17169747	Msa0841170:intron	30.0%
CATATCATTCAACTAACATG+TGG	-	chr5_4:17169775-17169794	Msa0841170:intron	30.0%
CTAATATGAGTAAGATTCTC+TGG	+	chr5_4:17169802-17169821	None:intergenic	30.0%
TAAAGAAGCCTGGAATAAAT+TGG	-	chr5_4:17169837-17169856	Msa0841170:intron	30.0%
AAAGAAGCCTGGAATAAATT+GGG	-	chr5_4:17169838-17169857	Msa0841170:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	17167872	17174368	17167872	ID=Msa0841170;Name=Msa0841170
chr5_4	mRNA	17167872	17174368	17167872	ID=Msa0841170-mRNA-1;Parent=Msa0841170;Name=Msa0841170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0\|0\|0.87\|0.28\|0.37\|8\|0\|614
chr5_4	exon	17174268	17174368	17174268	ID=Msa0841170-mRNA-1:exon:7375;Parent=Msa0841170-mRNA-1
chr5_4	exon	17172333	17172577	17172333	ID=Msa0841170-mRNA-1:exon:7374;Parent=Msa0841170-mRNA-1
chr5_4	exon	17171301	17171531	17171301	ID=Msa0841170-mRNA-1:exon:7373;Parent=Msa0841170-mRNA-1
chr5_4	exon	17171070	17171291	17171070	ID=Msa0841170-mRNA-1:exon:7372;Parent=Msa0841170-mRNA-1
chr5_4	exon	17170786	17170947	17170786	ID=Msa0841170-mRNA-1:exon:7371;Parent=Msa0841170-mRNA-1
chr5_4	exon	17169186	17169365	17169186	ID=Msa0841170-mRNA-1:exon:7370;Parent=Msa0841170-mRNA-1
chr5_4	exon	17168929	17169143	17168929	ID=Msa0841170-mRNA-1:exon:7369;Parent=Msa0841170-mRNA-1
chr5_4	exon	17167872	17168360	17167872	ID=Msa0841170-mRNA-1:exon:7368;Parent=Msa0841170-mRNA-1
chr5_4	CDS	17174268	17174368	17174268	ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1
chr5_4	CDS	17172333	17172577	17172333	ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1
chr5_4	CDS	17171301	17171531	17171301	ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1
chr5_4	CDS	17171070	17171291	17171070	ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1
chr5_4	CDS	17170786	17170947	17170786	ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1
chr5_4	CDS	17169186	17169365	17169186	ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1
chr5_4	CDS	17168929	17169143	17168929	ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1
chr5_4	CDS	17167872	17168360	17167872	ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1

Gene Sequence

>Msa0841170

ATGCAAACTTTGAGAGAGGAGGTATGTCGCAAGTTGGACTTGAGACATAGGGTATGTCTCAAGTTGGACTTGAGACATAGGGTCAACTTTCCAAAAGTAGGAAACTATCTTGTGGGACATGGTCTGTGGGGTGTTGTGACCTCTATTCCTGAAATTGGTGCGCGTTCTAAGACTGAATATGAGATTTGGAACAGGAAGAATGGGAAGGCATTGCATATCATTCAACTAACATGTGGACCAGAGAATCTTACTCATATTAGAGATCTTCATATTGCTAAAGAAGCCTGGAATAAATTGGGTGCAACTTATAGCTCAGATTTACAAGCCGATCCAGATATTGAGCAAGGTGTGGTGGATGATAGTCTCCTTCAATATAAATCGCTGCACAAGTATATTGAGAGCGGTGAGTGGAAAGATGCAAACTCGTTTATTATGAGGGACAGTACAGCAATATATTCCACATCCTCTATGGGGAGGACCGTTCTTCACGTTGCGGTAGTTGCTGGGCACGAGGAAATTGTGAAGAAATTGGTGAAGGAAGGGAAAGATAAGTTAGTGAAAATGAAAGACAATCGAGCCCTAGCTCTTGTTGCTGAGCTGACCGGAAACACGAATATAGCGAAGTGTATGACTATGGTATATAAGAAAATATCACGGTCAGAGGACCTGTTATCTATGAAGACCAATGATGGTGAAATCCCTGTTCTTCTTGCTGCTGCTAAGGGACACAAAGAAATGACACGTTATCTTTACCGTTGTACACCGTTGGAAGACCTGGCCGATGATAATTATCGCAATGGTGTGGCTTTGAGTTTACTCCAACGATTTCCTCAAATGCCTCTTGCCCACAAATCACACTTTGAATCGGATTGTGTGCAACCATTATACGCATTGGCACGCATGCCTTCTGTGTTTCCAAGTGGTAGTGGATATGGGTTCATACGACAATTCTTTAACGATAGAATAAGGAAAATATATAATCAGAAAATGACCTACCGTGTAGCTCTTGAAATATTGAGTTGCTTGCACCAAAGAATTCAAGAGTTTAAGGAATCAGAACTTAGAGAGGCTTCGGCTTACGATGCAATGTTGCAAGCAGCAAAGCATGGGATTATTGAGTTTATAGATGCAATGAGAAAGGGCGTATTTTCACATGCAATTTTGAACCGTAGAAAAGCCGTTTTCGAACTCATACATGATGCAACTGTAAATGGACGGAAGGAGATAGTTAAATGCCGTGTAGACGCATTTGGCAATTCCATGTTGCACTTGGCAGGATATTTAGGGCCTTCCTCTGATCTTGATCGTAGATCCGGTCCTGCTATGCAGATGCAAAGAGAAATTCTATGGTTCAAGGAGCTAGTGAAAGCTGGGGAGAAATGGGCAAAAGATACAGCTGGTTCATTTACTCTTGTGGCTACACTCATCACTACTATCATGTTTGCTGCAGCTTTCACTGTCCCTGGTGGAAACAATCAAGACAATGGAGTTCCCTTGTTCTTGCACGACATCACATTTGATGTGTTTATTATAGCAGATGCAGCATCTCTTTTCACTTCTTCAACTTCGGTCCTTCTCTTCATTGGAATCCTAACGGCTCGTTACGCTGAAAAAGATTTCCTTAAGTCATTGCCACTAAGGTTACTTTTCGCACTCATTGCCCTTTTCTTCTCTGTGGTTTCTATGATAGTTGCCTTCTGTGCTTCACTTGCTATGCTCTTAAAGGGACATCATAGAGTCATAATAACAGCAATGTCATTTGCCAGTGTTCCTGTTATCGTTCTAGTTCCGTCACAATTGCGCCTCTTCCTTGAGATTTTCAAGTCTACAGTATTATCCAATTGA

Protein sequence

>Msa0841170

MQTLREEVCRKLDLRHRVCLKLDLRHRVNFPKVGNYLVGHGLWGVVTSIPEIGARSKTEYEIWNRKNGKALHIIQLTCGPENLTHIRDLHIAKEAWNKLGATYSSDLQADPDIEQGVVDDSLLQYKSLHKYIESGEWKDANSFIMRDSTAIYSTSSMGRTVLHVAVVAGHEEIVKKLVKEGKDKLVKMKDNRALALVAELTGNTNIAKCMTMVYKKISRSEDLLSMKTNDGEIPVLLAAAKGHKEMTRYLYRCTPLEDLADDNYRNGVALSLLQRFPQMPLAHKSHFESDCVQPLYALARMPSVFPSGSGYGFIRQFFNDRIRKIYNQKMTYRVALEILSCLHQRIQEFKESELREASAYDAMLQAAKHGIIEFIDAMRKGVFSHAILNRRKAVFELIHDATVNGRKEIVKCRVDAFGNSMLHLAGYLGPSSDLDRRSGPAMQMQREILWFKELVKAGEKWAKDTAGSFTLVATLITTIMFAAAFTVPGGNNQDNGVPLFLHDITFDVFIIADAASLFTSSTSVLLFIGILTARYAEKDFLKSLPLRLLFALIALFFSVVSMIVAFCASLAMLLKGHHRVIITAMSFASVPVIVLVPSQLRLFLEIFKSTVLSN*