Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841170 | XP_024640501.2 | 65.079 | 693 | 126 | 9 | 33 | 613 | 26 | 714 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841170 | A0A396HTM3 | 65.629 | 707 | 113 | 11 | 33 | 612 | 30 | 733 | 0.0 | 850 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048950 | Msa0841170 | 0.809625 | 1.725253e-50 | -8.615850e-47 |
| Msa0059880 | Msa0841170 | 0.863631 | 2.168794e-64 | -8.615850e-47 |
| Msa0072030 | Msa0841170 | 0.802191 | 6.308178e-49 | -8.615850e-47 |
| Msa0623980 | Msa0841170 | 0.825028 | 5.859187e-54 | -8.615850e-47 |
| Msa0631700 | Msa0841170 | 0.812051 | 5.149595e-51 | -8.615850e-47 |
| Msa0643840 | Msa0841170 | 0.803727 | 3.036912e-49 | -8.615850e-47 |
| Msa0645150 | Msa0841170 | 0.805711 | 1.170077e-49 | -8.615850e-47 |
| Msa0670360 | Msa0841170 | 0.842304 | 2.806674e-58 | -8.615850e-47 |
| Msa0671640 | Msa0841170 | 0.814495 | 1.496619e-51 | -8.615850e-47 |
| Msa0684720 | Msa0841170 | 0.822390 | 2.430144e-53 | -8.615850e-47 |
| Msa0719880 | Msa0841170 | 0.835160 | 1.971909e-56 | -8.615850e-47 |
| Msa0727480 | Msa0841170 | 0.826709 | 2.337053e-54 | -8.615850e-47 |
| Msa0768670 | Msa0841170 | 0.807899 | 4.034289e-50 | -8.615850e-47 |
| Msa0768720 | Msa0841170 | 0.819097 | 1.388592e-52 | -8.615850e-47 |
| Msa0777070 | Msa0841170 | 0.803921 | 2.767827e-49 | -8.615850e-47 |
| Msa0802590 | Msa0841170 | 0.930007 | 3.060329e-93 | -8.615850e-47 |
| Msa0814160 | Msa0841170 | 0.816389 | 5.672568e-52 | -8.615850e-47 |
| Msa0841130 | Msa0841170 | 0.970748 | 4.314505e-132 | -8.615850e-47 |
| Msa0841170 | Msa0854840 | 0.822375 | 2.449478e-53 | -8.615850e-47 |
| Msa0841170 | Msa0863840 | 0.800820 | 1.204622e-48 | -8.615850e-47 |
| Msa0841170 | Msa0883640 | 0.831316 | 1.788441e-55 | -8.615850e-47 |
| Msa0841170 | Msa0902340 | 0.817455 | 3.269322e-52 | -8.615850e-47 |
| Msa0841170 | Msa0910830 | 0.853716 | 1.987616e-61 | -8.615850e-47 |
| Msa0841170 | Msa0960090 | 0.834950 | 2.227825e-56 | -8.615850e-47 |
| Msa0841170 | Msa0967820 | 0.820034 | 8.487070e-53 | -8.615850e-47 |
| Msa0841170 | Msa0985700 | 0.830734 | 2.485982e-55 | -8.615850e-47 |
| Msa0841170 | Msa0993450 | 0.812937 | 3.296255e-51 | -8.615850e-47 |
| Msa0841170 | Msa1003110 | 0.824625 | 7.293623e-54 | -8.615850e-47 |
| Msa0841170 | Msa1020540 | 0.846260 | 2.428241e-59 | -8.615850e-47 |
| Msa0841170 | Msa1021620 | 0.845592 | 3.689924e-59 | -8.615850e-47 |
| Msa0841170 | Msa1024350 | 0.816708 | 4.810236e-52 | -8.615850e-47 |
| Msa0841170 | Msa1041630 | 0.804171 | 2.454960e-49 | -8.615850e-47 |
| Msa0841170 | Msa1046210 | 0.804028 | 2.628857e-49 | -8.615850e-47 |
| Msa0841170 | Msa1061670 | 0.809473 | 1.859319e-50 | -8.615850e-47 |
| Msa0841170 | Msa1087380 | 0.809847 | 1.545146e-50 | -8.615850e-47 |
| Msa0841170 | Msa1091000 | 0.811136 | 8.142807e-51 | -8.615850e-47 |
| Msa0841170 | Msa1109880 | 0.817587 | 3.052319e-52 | -8.615850e-47 |
| Msa0841170 | Msa1109890 | 0.847232 | 1.317089e-59 | -8.615850e-47 |
| Msa0841170 | Msa1133860 | 0.821211 | 4.554821e-53 | -8.615850e-47 |
| Msa0841170 | Msa1149020 | 0.838051 | 3.618035e-57 | -8.615850e-47 |
| Msa0841170 | Msa1152180 | 0.809353 | 1.973025e-50 | -8.615850e-47 |
| Msa0841170 | Msa1216600 | 0.812666 | 3.780227e-51 | -8.615850e-47 |
| Msa0841170 | Msa1286420 | 0.810672 | 1.026005e-50 | -8.615850e-47 |
| Msa0841170 | Msa1296870 | 0.822694 | 2.065808e-53 | -8.615850e-47 |
| Msa0841170 | Msa1300610 | 0.823585 | 1.279915e-53 | -8.615850e-47 |
| Msa0841170 | Msa1323030 | 0.816991 | 4.156960e-52 | -8.615850e-47 |
| Msa0841170 | Msa1323120 | 0.806111 | 9.641560e-50 | -8.615850e-47 |
| Msa0841170 | Msa1323160 | 0.804299 | 2.308612e-49 | -8.615850e-47 |
| Msa0841170 | Msa1329740 | 0.806086 | 9.758482e-50 | -8.615850e-47 |
| Msa0841170 | Msa1373560 | 0.806072 | 9.825182e-50 | -8.615850e-47 |
| Msa0841170 | Msa1376070 | 0.807726 | 4.390319e-50 | -8.615850e-47 |
| Msa0841170 | Msa1440400 | 0.925144 | 2.729680e-90 | -8.615850e-47 |
| Msa0841170 | Msa1459610 | 0.813303 | 2.740589e-51 | -8.615850e-47 |
| Msa0143680 | Msa0841170 | 0.919879 | 2.590772e-87 | -8.615850e-47 |
| Msa0143710 | Msa0841170 | 0.928411 | 2.999675e-92 | -8.615850e-47 |
| Msa0143740 | Msa0841170 | 0.942420 | 7.421070e-102 | -8.615850e-47 |
| Msa0143770 | Msa0841170 | 0.937344 | 4.033515e-98 | -8.615850e-47 |
| Msa0150910 | Msa0841170 | 0.832873 | 7.372664e-56 | -8.615850e-47 |
| Msa0163340 | Msa0841170 | 0.804663 | 1.938603e-49 | -8.615850e-47 |
| Msa0190670 | Msa0841170 | 0.818168 | 2.256330e-52 | -8.615850e-47 |
| Msa0212550 | Msa0841170 | 0.804109 | 2.529161e-49 | -8.615850e-47 |
| Msa0223880 | Msa0841170 | 0.803540 | 3.319821e-49 | -8.615850e-47 |
| Msa0252930 | Msa0841170 | 0.818490 | 1.907638e-52 | -8.615850e-47 |
| Msa0265060 | Msa0841170 | 0.800639 | 1.311714e-48 | -8.615850e-47 |
| Msa0278950 | Msa0841170 | 0.804788 | 1.825907e-49 | -8.615850e-47 |
| Msa0340650 | Msa0841170 | 0.801142 | 1.035076e-48 | -8.615850e-47 |
| Msa0535570 | Msa0841170 | 0.806148 | 9.467125e-50 | -8.615850e-47 |
| Msa0548970 | Msa0841170 | 0.813377 | 2.639477e-51 | -8.615850e-47 |
| Msa0549920 | Msa0841170 | 0.818393 | 2.006435e-52 | -8.615850e-47 |
| Msa0549930 | Msa0841170 | 0.800415 | 1.456566e-48 | -8.615850e-47 |
| Msa0591490 | Msa0841170 | 0.825101 | 5.632534e-54 | -8.615850e-47 |
| Msa0594320 | Msa0841170 | 0.808064 | 3.721398e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841170 | MtrunA17_Chr5g0410171 | 65.629 | 707 | 113 | 11 | 33 | 612 | 30 | 733 | 0.0 | 850 |
| Msa0841170 | MtrunA17_Chr5g0410341 | 85.460 | 337 | 5 | 2 | 322 | 614 | 411 | 747 | 0.0 | 562 |
| Msa0841170 | MtrunA17_Chr5g0410341 | 87.302 | 315 | 16 | 4 | 33 | 323 | 28 | 342 | 0.0 | 555 |
| Msa0841170 | MtrunA17_Chr5g0410201 | 74.924 | 327 | 38 | 2 | 330 | 612 | 1 | 327 | 2.59e-167 | 479 |
| Msa0841170 | MtrunA17_Chr5g0410271 | 74.540 | 326 | 39 | 2 | 332 | 613 | 2 | 327 | 6.53e-165 | 473 |
| Msa0841170 | MtrunA17_Chr6g0457101 | 39.912 | 679 | 292 | 16 | 33 | 613 | 28 | 688 | 7.45e-140 | 423 |
| Msa0841170 | MtrunA17_Chr5g0410461 | 51.762 | 369 | 124 | 7 | 294 | 610 | 96 | 462 | 1.32e-107 | 332 |
| Msa0841170 | MtrunA17_Chr6g0456141 | 49.555 | 337 | 122 | 5 | 322 | 613 | 51 | 384 | 6.04e-100 | 310 |
| Msa0841170 | MtrunA17_Chr5g0410371 | 57.095 | 296 | 77 | 4 | 363 | 610 | 1 | 294 | 5.52e-99 | 304 |
| Msa0841170 | MtrunA17_Chr6g0456101 | 34.771 | 719 | 312 | 24 | 33 | 606 | 28 | 734 | 7.04e-99 | 318 |
| Msa0841170 | MtrunA17_Chr5g0410191 | 80.368 | 163 | 32 | 0 | 452 | 614 | 32 | 194 | 3.80e-84 | 261 |
| Msa0841170 | MtrunA17_Chr5g0410581 | 30.591 | 778 | 326 | 25 | 35 | 611 | 31 | 795 | 1.07e-77 | 263 |
| Msa0841170 | MtrunA17_Chr5g0410291 | 67.539 | 191 | 39 | 5 | 146 | 317 | 3 | 189 | 3.33e-76 | 241 |
| Msa0841170 | MtrunA17_Chr5g0410211 | 64.921 | 191 | 47 | 4 | 147 | 317 | 4 | 194 | 1.14e-70 | 227 |
| Msa0841170 | MtrunA17_Chr5g0410181 | 79.104 | 134 | 28 | 0 | 480 | 613 | 1 | 134 | 4.50e-68 | 217 |
| Msa0841170 | MtrunA17_Chr2g0297701 | 30.797 | 552 | 295 | 18 | 124 | 612 | 44 | 571 | 6.94e-57 | 201 |
| Msa0841170 | MtrunA17_Chr5g0443001 | 30.651 | 584 | 294 | 22 | 125 | 610 | 31 | 601 | 2.62e-54 | 195 |
| Msa0841170 | MtrunA17_Chr2g0297691 | 27.179 | 677 | 368 | 23 | 38 | 610 | 36 | 691 | 8.93e-49 | 181 |
| Msa0841170 | MtrunA17_Chr2g0297681 | 26.379 | 671 | 377 | 22 | 38 | 609 | 36 | 688 | 2.79e-46 | 174 |
| Msa0841170 | MtrunA17_Chr2g0297651 | 26.449 | 673 | 375 | 21 | 38 | 610 | 38 | 690 | 5.11e-46 | 173 |
| Msa0841170 | MtrunA17_Chr5g0410451 | 49.697 | 165 | 78 | 1 | 452 | 611 | 71 | 235 | 1.23e-45 | 161 |
| Msa0841170 | MtrunA17_Chr5g0410541 | 52.121 | 165 | 73 | 2 | 452 | 611 | 53 | 216 | 1.11e-43 | 155 |
| Msa0841170 | MtrunA17_Chr3g0100741 | 25.760 | 559 | 313 | 13 | 125 | 593 | 33 | 579 | 1.22e-43 | 165 |
| Msa0841170 | MtrunA17_Chr2g0297491 | 35.971 | 278 | 144 | 4 | 364 | 610 | 103 | 377 | 2.94e-43 | 159 |
| Msa0841170 | MtrunA17_Chr6g0456151 | 42.085 | 259 | 119 | 9 | 33 | 270 | 28 | 276 | 1.72e-42 | 154 |
| Msa0841170 | MtrunA17_Chr5g0410471 | 44.298 | 228 | 97 | 7 | 39 | 255 | 105 | 313 | 2.92e-41 | 152 |
| Msa0841170 | MtrunA17_Chr3g0100301 | 41.327 | 196 | 78 | 2 | 441 | 606 | 209 | 397 | 4.74e-39 | 148 |
| Msa0841170 | MtrunA17_Chr2g0297711 | 27.186 | 526 | 298 | 16 | 124 | 610 | 47 | 526 | 3.92e-38 | 148 |
| Msa0841170 | MtrunA17_Chr2g0297481 | 34.420 | 276 | 147 | 5 | 364 | 610 | 201 | 471 | 4.78e-38 | 147 |
| Msa0841170 | MtrunA17_Chr3g0096941 | 24.777 | 561 | 315 | 15 | 125 | 592 | 33 | 579 | 1.12e-36 | 145 |
| Msa0841170 | MtrunA17_Chr5g0410411 | 39.695 | 262 | 105 | 10 | 35 | 255 | 30 | 279 | 2.33e-36 | 139 |
| Msa0841170 | MtrunA17_Chr5g0410381 | 39.837 | 246 | 101 | 8 | 116 | 320 | 3 | 242 | 6.58e-36 | 135 |
| Msa0841170 | MtrunA17_Chr5g0410251 | 65.476 | 84 | 29 | 0 | 33 | 116 | 26 | 109 | 3.34e-33 | 123 |
| Msa0841170 | MtrunA17_Chr2g0286601 | 33.106 | 293 | 141 | 6 | 345 | 592 | 371 | 653 | 2.50e-30 | 126 |
| Msa0841170 | MtrunA17_Chr5g0410511 | 42.949 | 156 | 80 | 1 | 452 | 607 | 32 | 178 | 1.29e-29 | 116 |
| Msa0841170 | MtrunA17_Chr3g0098481 | 29.560 | 318 | 159 | 8 | 350 | 610 | 22 | 331 | 4.99e-29 | 118 |
| Msa0841170 | MtrunA17_Chr3g0102001 | 30.293 | 307 | 147 | 7 | 362 | 611 | 440 | 736 | 1.52e-26 | 115 |
| Msa0841170 | MtrunA17_Chr2g0286551 | 31.488 | 289 | 149 | 6 | 363 | 606 | 370 | 654 | 5.97e-25 | 109 |
| Msa0841170 | MtrunA17_Chr2g0286561 | 38.849 | 139 | 78 | 1 | 454 | 592 | 47 | 178 | 1.86e-24 | 102 |
| Msa0841170 | MtrunA17_Chr5g0410501 | 40.972 | 144 | 68 | 3 | 323 | 451 | 147 | 288 | 6.87e-24 | 102 |
| Msa0841170 | MtrunA17_Chr3g0098301 | 27.184 | 309 | 170 | 8 | 350 | 606 | 88 | 393 | 2.64e-22 | 99.8 |
| Msa0841170 | MtrunA17_Chr5g0410561 | 36.842 | 209 | 121 | 7 | 66 | 270 | 2 | 203 | 3.10e-21 | 92.8 |
| Msa0841170 | MtrunA17_Chr5g0439081 | 36.076 | 158 | 94 | 3 | 451 | 603 | 41 | 196 | 3.25e-21 | 92.4 |
| Msa0841170 | MtrunA17_Chr5g0410551 | 46.667 | 105 | 39 | 3 | 363 | 452 | 1 | 103 | 1.20e-20 | 87.8 |
| Msa0841170 | MtrunA17_Chr2g0284501 | 28.364 | 275 | 154 | 7 | 372 | 613 | 392 | 656 | 1.29e-19 | 93.2 |
| Msa0841170 | MtrunA17_Chr1g0211541 | 25.325 | 462 | 240 | 19 | 135 | 531 | 6 | 427 | 2.11e-19 | 92.0 |
| Msa0841170 | MtrunA17_Chr3g0098531 | 27.234 | 235 | 136 | 4 | 408 | 608 | 48 | 281 | 3.20e-19 | 88.6 |
| Msa0841170 | MtrunA17_Chr5g0439061 | 28.082 | 292 | 160 | 6 | 363 | 606 | 437 | 726 | 2.70e-18 | 89.0 |
| Msa0841170 | MtrunA17_Chr3g0100921 | 40.650 | 123 | 72 | 1 | 471 | 592 | 2 | 124 | 8.26e-18 | 80.5 |
| Msa0841170 | MtrunA17_Chr2g0284541 | 27.673 | 318 | 174 | 7 | 334 | 604 | 322 | 630 | 9.59e-18 | 87.0 |
| Msa0841170 | MtrunA17_Chr5g0410441 | 43.333 | 90 | 48 | 2 | 364 | 452 | 1 | 88 | 1.37e-17 | 79.0 |
| Msa0841170 | MtrunA17_Chr5g0439051 | 34.591 | 159 | 102 | 2 | 452 | 609 | 50 | 207 | 1.01e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841170 | AT3G18670.1 | 35.334 | 583 | 275 | 19 | 104 | 614 | 35 | 587 | 2.67e-95 | 305 |
| Msa0841170 | AT3G18670.2 | 33.280 | 628 | 282 | 19 | 104 | 614 | 35 | 642 | 1.08e-92 | 299 |
| Msa0841170 | AT5G04690.3 | 30.397 | 579 | 305 | 13 | 116 | 610 | 67 | 631 | 4.01e-64 | 223 |
| Msa0841170 | AT5G04690.1 | 31.194 | 561 | 306 | 15 | 115 | 610 | 66 | 611 | 1.33e-62 | 218 |
| Msa0841170 | AT5G04690.2 | 29.798 | 594 | 305 | 14 | 115 | 610 | 66 | 645 | 5.74e-62 | 217 |
| Msa0841170 | AT5G04700.1 | 29.202 | 589 | 302 | 14 | 124 | 610 | 80 | 655 | 4.82e-59 | 209 |
| Msa0841170 | AT5G04680.3 | 28.253 | 584 | 308 | 16 | 124 | 610 | 67 | 636 | 1.28e-51 | 189 |
| Msa0841170 | AT5G04680.4 | 28.020 | 596 | 308 | 16 | 124 | 610 | 67 | 650 | 3.13e-50 | 185 |
| Msa0841170 | AT5G04730.1 | 29.050 | 537 | 277 | 16 | 172 | 610 | 58 | 588 | 7.16e-47 | 174 |
| Msa0841170 | AT5G04680.2 | 28.518 | 533 | 262 | 15 | 185 | 610 | 7 | 527 | 1.12e-46 | 173 |
| Msa0841170 | AT5G04680.1 | 27.083 | 624 | 307 | 21 | 124 | 610 | 67 | 679 | 2.07e-45 | 171 |
| Msa0841170 | AT5G35810.1 | 34.520 | 281 | 145 | 5 | 371 | 614 | 57 | 335 | 3.20e-43 | 159 |
| Msa0841170 | AT3G54065.1 | 39.535 | 172 | 68 | 2 | 438 | 573 | 8 | 179 | 1.18e-32 | 126 |
| Msa0841170 | AT5G04700.2 | 25.063 | 399 | 216 | 11 | 124 | 452 | 80 | 465 | 4.52e-22 | 100 |
| Msa0841170 | AT5G35830.1 | 30.000 | 160 | 101 | 4 | 112 | 266 | 73 | 226 | 1.55e-12 | 68.9 |
| Msa0841170 | AT3G54070.1 | 28.324 | 173 | 111 | 6 | 100 | 266 | 24 | 189 | 7.03e-12 | 66.6 |
Find 150 sgRNAs with CRISPR-Local
Find 386 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCACTTGGCAGGATATTT+AGG | 0.127030 | 5_4:-17168999 | Msa0841170:CDS |
| CCAAAGAATTCAAGAGTTTA+AGG | 0.157617 | 5_4:-17169276 | Msa0841170:CDS |
| TTCACTTGCTATGCTCTTAA+AGG | 0.220345 | 5_4:-17167991 | Msa0841170:CDS |
| CCTTAAACTCTTGAATTCTT+TGG | 0.238324 | 5_4:+17169276 | None:intergenic |
| TAAAGAAGCCTGGAATAAAT+TGG | 0.241875 | 5_4:-17172381 | Msa0841170:CDS |
| ATACATGATGCAACTGTAAA+TGG | 0.242921 | 5_4:-17169071 | Msa0841170:CDS |
| TTAGAACGCGCACCAATTTC+AGG | 0.251761 | 5_4:+17172509 | None:intergenic |
| CTTCGCTATATTCGTGTTTC+CGG | 0.254247 | 5_4:+17171245 | None:intergenic |
| AATATATTCCACATCCTCTA+TGG | 0.260429 | 5_4:-17171406 | Msa0841170:CDS |
| GTGACCTCTATTCCTGAAAT+TGG | 0.292763 | 5_4:-17172521 | Msa0841170:CDS |
| TATATACCTTGCTCAATATC+TGG | 0.305429 | 5_4:+17172326 | None:intergenic |
| TGCACTTGGCAGGATATTTA+GGG | 0.308043 | 5_4:-17168998 | Msa0841170:CDS |
| TTTCCAAGTGGTAGTGGATA+TGG | 0.311953 | 5_4:-17170812 | Msa0841170:CDS |
| ACTTCGGTCCTTCTCTTCAT+TGG | 0.319322 | 5_4:-17168131 | Msa0841170:CDS |
| AATTGTATCCATCAGGAATA+AGG | 0.321064 | 5_4:-17169358 | Msa0841170:intron |
| CTTCACGTTGCGGTAGTTGC+TGG | 0.322177 | 5_4:-17171372 | Msa0841170:CDS |
| CTAAGACTGAATATGAGATT+TGG | 0.338368 | 5_4:-17172490 | Msa0841170:CDS |
| CGAGGAAATTGTGAAGAAAT+TGG | 0.372095 | 5_4:-17171346 | Msa0841170:CDS |
| AACAGGGATTTCACCATCAT+TGG | 0.379563 | 5_4:+17171164 | None:intergenic |
| TGTTCTTCTTGCTGCTGCTA+AGG | 0.379583 | 5_4:-17171145 | Msa0841170:CDS |
| ATGCAAACTCGTTTATTATG+AGG | 0.383311 | 5_4:-17171440 | Msa0841170:CDS |
| TAGTGAAAGCTGGGGAGAAA+TGG | 0.384321 | 5_4:-17168334 | Msa0841170:CDS |
| GATAAGTAATAAGTTTCAAT+TGG | 0.388393 | 5_4:+17167857 | None:intergenic |
| AGTTGCACCCAATTTATTCC+AGG | 0.399506 | 5_4:+17172373 | None:intergenic |
| GCTGCAGCTTTCACTGTCCC+TGG | 0.408383 | 5_4:-17168251 | Msa0841170:CDS |
| TTAGCAGCAGCAAGAAGAAC+AGG | 0.410668 | 5_4:+17171147 | None:intergenic |
| TAGAAACCACAGAGAAGAAA+AGG | 0.416389 | 5_4:+17168033 | None:intergenic |
| TTCCAAGTGGTAGTGGATAT+GGG | 0.416844 | 5_4:-17170811 | Msa0841170:CDS |
| AAATGCCGTGTAGACGCATT+TGG | 0.419337 | 5_4:-17169032 | Msa0841170:CDS |
| AATTCCATGTTGCACTTGGC+AGG | 0.419647 | 5_4:-17169008 | Msa0841170:CDS |
| ATCAGAACTTAGAGAGGCTT+CGG | 0.421195 | 5_4:-17169252 | Msa0841170:CDS |
| CTAATATGAGTAAGATTCTC+TGG | 0.424630 | 5_4:+17172419 | None:intergenic |
| TCACTTGCTATGCTCTTAAA+GGG | 0.427681 | 5_4:-17167990 | Msa0841170:CDS |
| CATTGGTCTTCATAGATAAC+AGG | 0.427879 | 5_4:+17171181 | None:intergenic |
| ACCTTAGTGGCAATGACTTA+AGG | 0.429666 | 5_4:+17168075 | None:intergenic |
| AGATGCAAAGAGAAATTCTA+TGG | 0.430747 | 5_4:-17168935 | Msa0841170:CDS |
| TTCACGTTGCGGTAGTTGCT+GGG | 0.432176 | 5_4:-17171371 | Msa0841170:CDS |
| TCTCTTTGCATCTGCATAGC+AGG | 0.438079 | 5_4:+17168945 | None:intergenic |
| GAGATTTGGAACAGGAAGAA+TGG | 0.441267 | 5_4:-17172476 | Msa0841170:CDS |
| CCACAAATCACACTTTGAAT+CGG | 0.443086 | 5_4:-17170879 | Msa0841170:CDS |
| TCTGTGTTTCCAAGTGGTAG+TGG | 0.443413 | 5_4:-17170818 | Msa0841170:CDS |
| CTGAATATGAGATTTGGAAC+AGG | 0.444534 | 5_4:-17172484 | Msa0841170:CDS |
| GTTCTTCTTGCTGCTGCTAA+GGG | 0.445513 | 5_4:-17171144 | Msa0841170:CDS |
| GACGGAACTAGAACGATAAC+AGG | 0.453839 | 5_4:+17167924 | None:intergenic |
| CACAAGGAGCTAGTGAAAGC+TGG | 0.455549 | 5_4:-17168344 | Msa0841170:intron |
| CGATTCAAAGTGTGATTTGT+GGG | 0.456154 | 5_4:+17170880 | None:intergenic |
| TATAGCGAAGTGTATGACTA+TGG | 0.458675 | 5_4:-17171232 | Msa0841170:CDS |
| TCCTTAAGTCATTGCCACTA+AGG | 0.460081 | 5_4:-17168076 | Msa0841170:CDS |
| TCTTGTGGGACATGGTCTGT+GGG | 0.464135 | 5_4:-17172549 | Msa0841170:CDS |
| TTTCAGCGTAACGAGCCGTT+AGG | 0.467061 | 5_4:+17168105 | None:intergenic |
| GTTTATAGATGCAATGAGAA+AGG | 0.467103 | 5_4:-17169186 | Msa0841170:CDS |
| TTGTGGGCAAGAGGCATTTG+AGG | 0.467341 | 5_4:+17170896 | None:intergenic |
| CTTGTTAGAAACTATCTTGT+GGG | 0.467922 | 5_4:-17172563 | Msa0841170:intron |
| ATGCGTGCCAATGCGTATAA+TGG | 0.471182 | 5_4:+17170845 | None:intergenic |
| TGTGCAGCGATTTATATTGA+AGG | 0.474499 | 5_4:+17171490 | None:intergenic |
| TTCATATTGCTAAAGAAGCC+TGG | 0.477292 | 5_4:-17172391 | Msa0841170:CDS |
| ACAAGGAGCTAGTGAAAGCT+GGG | 0.477954 | 5_4:-17168343 | Msa0841170:intron |
| AAAGAAGCCTGGAATAAATT+GGG | 0.481257 | 5_4:-17172380 | Msa0841170:CDS |
| AGCTGGTTCATTTACTCTTG+TGG | 0.482801 | 5_4:-17168300 | Msa0841170:CDS |
| AGATTTGGAACAGGAAGAAT+GGG | 0.485550 | 5_4:-17172475 | Msa0841170:CDS |
| TCAGCTCAGCAACAAGAGCT+AGG | 0.486371 | 5_4:+17171268 | None:intergenic |
| CATAGCAAGTGAAGCACAGA+AGG | 0.486804 | 5_4:+17168001 | None:intergenic |
| ATCTTGTGGGACATGGTCTG+TGG | 0.486835 | 5_4:-17172550 | Msa0841170:CDS |
| AGTGAAAGCTGGGGAGAAAT+GGG | 0.487029 | 5_4:-17168333 | Msa0841170:CDS |
| GTGAAGAAATTGGTGAAGGA+AGG | 0.488215 | 5_4:-17171336 | Msa0841170:CDS |
| TTGCATCTGCATAGCAGGAC+CGG | 0.495069 | 5_4:+17168950 | None:intergenic |
| AGGGTCAACTTTCCAAAAGT+AGG | 0.495797 | 5_4:-17174268 | Msa0841170:CDS |
| ATATATTCCACATCCTCTAT+GGG | 0.496055 | 5_4:-17171405 | Msa0841170:CDS |
| TTGTCTTGATTGTTTCCACC+AGG | 0.496117 | 5_4:+17168233 | None:intergenic |
| TTGTACACCGTTGGAAGACC+TGG | 0.502955 | 5_4:-17171091 | Msa0841170:CDS |
| TTTATAGATGCAATGAGAAA+GGG | 0.503030 | 5_4:-17169185 | Msa0841170:intron |
| ATCATGTATGAGTTCGAAAA+CGG | 0.503307 | 5_4:+17169085 | None:intergenic |
| TGCGATAATTATCATCGGCC+AGG | 0.509460 | 5_4:+17171073 | None:intergenic |
| TGGCAATTCCATGTTGCACT+TGG | 0.511014 | 5_4:-17169012 | Msa0841170:CDS |
| TCTTTACCGTTGTACACCGT+TGG | 0.515694 | 5_4:-17171100 | Msa0841170:CDS |
| TCTGATCTTGATCGTAGATC+CGG | 0.515841 | 5_4:-17168969 | Msa0841170:CDS |
| CGCACCAATTTCAGGAATAG+AGG | 0.521001 | 5_4:+17172517 | None:intergenic |
| GCTCTTGTTGCTGAGCTGAC+CGG | 0.526277 | 5_4:-17171264 | Msa0841170:CDS |
| CCGATTCAAAGTGTGATTTG+TGG | 0.526820 | 5_4:+17170879 | None:intergenic |
| TGTGATGTCGTGCAAGAACA+AGG | 0.535047 | 5_4:+17168202 | None:intergenic |
| TGCAAACTCGTTTATTATGA+GGG | 0.536344 | 5_4:-17171439 | Msa0841170:CDS |
| GAGGCATTTGAGGAAATCGT+TGG | 0.537554 | 5_4:+17170906 | None:intergenic |
| GGTCCTCCCCATAGAGGATG+TGG | 0.539677 | 5_4:+17171398 | None:intergenic |
| GGGTCAACTTTCCAAAAGTA+GGG | 0.540755 | 5_4:-17174267 | Msa0841170:intron |
| AAGAGAAATTCTATGGTTCA+AGG | 0.541072 | 5_4:-17168928 | Msa0841170:intron |
| TGTGCAACCATTATACGCAT+TGG | 0.543058 | 5_4:-17170852 | Msa0841170:CDS |
| TCAAGTTGGACTTGAGACAT+AGG | 0.547337 | 5_4:-17174288 | Msa0841170:CDS |
| AGTGCGAAAAGTAACCTTAG+TGG | 0.548121 | 5_4:+17168062 | None:intergenic |
| ATGTTGCAAGCAGCAAAGCA+TGG | 0.548691 | 5_4:-17169218 | Msa0841170:CDS |
| AACCCATATCCACTACCACT+TGG | 0.557493 | 5_4:+17170809 | None:intergenic |
| AAGTGTGATTTGTGGGCAAG+AGG | 0.558162 | 5_4:+17170887 | None:intergenic |
| TCTTGTTAGAAACTATCTTG+TGG | 0.559427 | 5_4:-17172564 | Msa0841170:intron |
| GCAAGTTGGACTTGAGACAT+AGG | 0.562622 | 5_4:-17174318 | Msa0841170:CDS |
| AGAAACTATCTTGTGGGACA+TGG | 0.562860 | 5_4:-17172557 | Msa0841170:CDS |
| AGAAACCACAGAGAAGAAAA+GGG | 0.563826 | 5_4:+17168034 | None:intergenic |
| ACCTTGCTCAATATCTGGAT+CGG | 0.564323 | 5_4:+17172331 | None:intergenic |
| TGTTGCAAGCAGCAAAGCAT+GGG | 0.564523 | 5_4:-17169217 | Msa0841170:CDS |
| GCTTTAATTTGCAGGTGTGG+TGG | 0.564757 | 5_4:-17171523 | Msa0841170:intron |
| ACATAGGGTATGTCTCAAGT+TGG | 0.566229 | 5_4:-17174302 | Msa0841170:CDS |
| AGAGGAGGTATGTCGCAAGT+TGG | 0.567384 | 5_4:-17174332 | Msa0841170:CDS |
| ACTTGAAAATCTCAAGGAAG+AGG | 0.567742 | 5_4:+17167892 | None:intergenic |
| TAAGGAATCAGAACTTAGAG+AGG | 0.568613 | 5_4:-17169258 | Msa0841170:CDS |
| GCCGATGATAATTATCGCAA+TGG | 0.574637 | 5_4:-17171069 | Msa0841170:intron |
| TGAAGAAATTGGTGAAGGAA+GGG | 0.574748 | 5_4:-17171335 | Msa0841170:CDS |
| CAGCTCAGCAACAAGAGCTA+GGG | 0.580236 | 5_4:+17171269 | None:intergenic |
| AAATGGGCAAAAGATACAGC+TGG | 0.580445 | 5_4:-17168317 | Msa0841170:CDS |
| TTATCTATGAAGACCAATGA+TGG | 0.582929 | 5_4:-17171177 | Msa0841170:CDS |
| TAAGAAAATATCACGGTCAG+AGG | 0.584733 | 5_4:-17171205 | Msa0841170:CDS |
| TGCGGTAGTTGCTGGGCACG+AGG | 0.589759 | 5_4:-17171364 | Msa0841170:CDS |
| TCTCTTCATTGGAATCCTAA+CGG | 0.591072 | 5_4:-17168120 | Msa0841170:CDS |
| CTGTAGACTTGAAAATCTCA+AGG | 0.594097 | 5_4:+17167886 | None:intergenic |
| CAAGTTGGACTTGAGACATA+GGG | 0.596187 | 5_4:-17174317 | Msa0841170:CDS |
| CAAGTTGGACTTGAGACATA+GGG | 0.598930 | 5_4:-17174287 | Msa0841170:CDS |
| GCAGCTTTCACTGTCCCTGG+TGG | 0.601445 | 5_4:-17168248 | Msa0841170:CDS |
| AGGAAGAGGCGCAATTGTGA+CGG | 0.607133 | 5_4:+17167906 | None:intergenic |
| AGTATATTGAGAGCGGTGAG+TGG | 0.609550 | 5_4:-17171467 | Msa0841170:CDS |
| ACCATTGCGATAATTATCAT+CGG | 0.609954 | 5_4:+17171068 | None:intergenic |
| TAGAACGATAACAGGAACAC+TGG | 0.611619 | 5_4:+17167932 | None:intergenic |
| AACTACCGCAACGTGAAGAA+CGG | 0.612033 | 5_4:+17171377 | None:intergenic |
| AATTGCCAAATGCGTCTACA+CGG | 0.612652 | 5_4:+17169027 | None:intergenic |
| TTAGGATTCCAATGAAGAGA+AGG | 0.614556 | 5_4:+17168123 | None:intergenic |
| GCCGATCCAGATATTGAGCA+AGG | 0.614842 | 5_4:-17172332 | Msa0841170:intron |
| ATGCCTTCTGTGTTTCCAAG+TGG | 0.615562 | 5_4:-17170824 | Msa0841170:CDS |
| TGCAACTGTAAATGGACGGA+AGG | 0.618113 | 5_4:-17169063 | Msa0841170:CDS |
| CTTGTGGGACATGGTCTGTG+GGG | 0.619674 | 5_4:-17172548 | Msa0841170:CDS |
| CTACCACTTGGAAACACAGA+AGG | 0.622603 | 5_4:+17170821 | None:intergenic |
| AAGAACGGTCCTCCCCATAG+AGG | 0.622685 | 5_4:+17171392 | None:intergenic |
| AATTGTGAAGAAATTGGTGA+AGG | 0.625256 | 5_4:-17171340 | Msa0841170:CDS |
| ATATCCTGCCAAGTGCAACA+TGG | 0.627952 | 5_4:+17169004 | None:intergenic |
| AATGCAAACTTTGAGAGAGG+AGG | 0.628075 | 5_4:-17174347 | Msa0841170:CDS |
| GGTGGAAACAATCAAGACAA+TGG | 0.629811 | 5_4:-17168230 | Msa0841170:CDS |
| ATGATGCAACTGTAAATGGA+CGG | 0.638038 | 5_4:-17169067 | Msa0841170:CDS |
| CATATCATTCAACTAACATG+TGG | 0.643061 | 5_4:-17172443 | Msa0841170:CDS |
| TGTCTTGATTGTTTCCACCA+GGG | 0.652150 | 5_4:+17168234 | None:intergenic |
| GAGGACCGTTCTTCACGTTG+CGG | 0.655029 | 5_4:-17171382 | Msa0841170:CDS |
| GTGATGTCGTGCAAGAACAA+GGG | 0.659099 | 5_4:+17168203 | None:intergenic |
| ATTCCACATCCTCTATGGGG+AGG | 0.660094 | 5_4:-17171401 | Msa0841170:CDS |
| TAGCAGCAGCAAGAAGAACA+GGG | 0.665135 | 5_4:+17171148 | None:intergenic |
| TTGGAACAGGAAGAATGGGA+AGG | 0.668429 | 5_4:-17172471 | Msa0841170:CDS |
| TATTTCAAGAGCTACACGGT+AGG | 0.669157 | 5_4:+17169313 | None:intergenic |
| GTGAAAATGAAAGACAATCG+AGG | 0.669964 | 5_4:-17171300 | Msa0841170:intron |
| TCATCGGCCAGGTCTTCCAA+CGG | 0.671668 | 5_4:+17171084 | None:intergenic |
| TGGTATATAAGAAAATATCA+CGG | 0.677081 | 5_4:-17171212 | Msa0841170:CDS |
| CTACGATCAAGATCAGAGGA+AGG | 0.678354 | 5_4:+17168975 | None:intergenic |
| CTGCACAAGTATATTGAGAG+CGG | 0.680709 | 5_4:-17171474 | Msa0841170:CDS |
| GGATCTACGATCAAGATCAG+AGG | 0.680818 | 5_4:+17168971 | None:intergenic |
| TCAATATTTCAAGAGCTACA+CGG | 0.684421 | 5_4:+17169309 | None:intergenic |
| GGTCTTCCAACGGTGTACAA+CGG | 0.687225 | 5_4:+17171094 | None:intergenic |
| TATATTCCACATCCTCTATG+GGG | 0.688060 | 5_4:-17171404 | Msa0841170:CDS |
| CAAGGAGCTAGTGAAAGCTG+GGG | 0.701952 | 5_4:-17168342 | Msa0841170:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGCTTATAATTAAAAA+CGG | - | chr5_4:17168304-17168323 | Msa0841170:CDS | 10.0% |
| !! | TAATAATTATGTTAGTATAA+TGG | + | chr5_4:17168773-17168792 | None:intergenic | 10.0% |
| !!! | ATTAACTTTTTTCTATTAAA+GGG | + | chr5_4:17169102-17169121 | None:intergenic | 10.0% |
| !!! | TATTAACTTTTTTCTATTAA+AGG | + | chr5_4:17169103-17169122 | None:intergenic | 10.0% |
| !! | TCTTAAATACTTATAATATT+AGG | - | chr5_4:17170609-17170628 | Msa0841170:intron | 10.0% |
| !! | CTTAAATACTTATAATATTA+GGG | - | chr5_4:17170610-17170629 | Msa0841170:intron | 10.0% |
| !!! | TTTATTTTTGGTTTCATTTT+AGG | - | chr5_4:17167980-17167999 | Msa0841170:CDS | 15.0% |
| !!! | TTATTTTTGGTTTCATTTTA+GGG | - | chr5_4:17167981-17168000 | Msa0841170:CDS | 15.0% |
| !!! | GAAAGTGTATATATTAATTT+AGG | - | chr5_4:17168537-17168556 | Msa0841170:intron | 15.0% |
| !!! | TTTTATATAGATGATATATG+AGG | - | chr5_4:17168570-17168589 | Msa0841170:intron | 15.0% |
| !! | TTTATATAGATGATATATGA+GGG | - | chr5_4:17168571-17168590 | Msa0841170:intron | 15.0% |
| !! | ATCTATTGATAAATATTTGT+TGG | - | chr5_4:17168803-17168822 | Msa0841170:intron | 15.0% |
| !! | TTATTAAACAGTAAAAGTTT+AGG | - | chr5_4:17170467-17170486 | Msa0841170:intron | 15.0% |
| !!! | ACTGAATTTTAATTAAATTG+AGG | - | chr5_4:17171223-17171242 | Msa0841170:CDS | 15.0% |
| !!! | CTGAATTTTAATTAAATTGA+GGG | - | chr5_4:17171224-17171243 | Msa0841170:CDS | 15.0% |
| !! | ACTTTATAAAAGAAATTTAG+AGG | - | chr5_4:17171648-17171667 | Msa0841170:intron | 15.0% |
| !!! | CAAAAGTTTGTATTTTATAA+AGG | + | chr5_4:17171705-17171724 | None:intergenic | 15.0% |
| !! | TACTTCCAATAATATATTAA+AGG | - | chr5_4:17171781-17171800 | Msa0841170:intron | 15.0% |
| !! | AAACTCCTTTAATATATTAT+TGG | + | chr5_4:17171789-17171808 | None:intergenic | 15.0% |
| !!! | TTATTAATCCTTGTTTAAAT+AGG | - | chr5_4:17172702-17172721 | Msa0841170:intron | 15.0% |
| !!! | TTATTAATCCTTGTTTAAAT+AGG | - | chr5_4:17172702-17172721 | Msa0841170:intron | 15.0% |
| !! | TTTAATTAATTAATCACAGA+GGG | + | chr5_4:17172823-17172842 | None:intergenic | 15.0% |
| !! | ATTTAATTAATTAATCACAG+AGG | + | chr5_4:17172824-17172843 | None:intergenic | 15.0% |
| !!! | AAAAACTAAATTTGAAATTC+TGG | - | chr5_4:17173579-17173598 | Msa0841170:intron | 15.0% |
| !! | ATATTTATTAGTTAGCATCA+CGG | + | chr5_4:17168019-17168038 | None:intergenic | 20.0% |
| !! | TGCTTATAATTAAAAACAGA+GGG | + | chr5_4:17168193-17168212 | None:intergenic | 20.0% |
| !! | TTGCTTATAATTAAAAACAG+AGG | + | chr5_4:17168194-17168213 | None:intergenic | 20.0% |
| !! | GATGTATGTGATTTATATTA+TGG | + | chr5_4:17168258-17168277 | None:intergenic | 20.0% |
| !!! | ATAAGCAAATTTGACTTTTT+AGG | + | chr5_4:17168295-17168314 | None:intergenic | 20.0% |
| !! | GAATTATAATATCTATCATC+AGG | + | chr5_4:17168369-17168388 | None:intergenic | 20.0% |
| !! | TGATAGATATTATAATTCAC+AGG | - | chr5_4:17168371-17168390 | Msa0841170:intron | 20.0% |
| !! | TATATACACTTTCAATTCAT+TGG | + | chr5_4:17168530-17168549 | None:intergenic | 20.0% |
| !! | TTATATAGATGATATATGAG+GGG | - | chr5_4:17168572-17168591 | Msa0841170:intron | 20.0% |
| !! | ATAACTAACTAATTAACTGA+TGG | + | chr5_4:17168896-17168915 | None:intergenic | 20.0% |
| !!! | TTTTTTTCACATTTATTCCA+TGG | + | chr5_4:17169024-17169043 | None:intergenic | 20.0% |
| !!! | ATACTTTGAAAGAAACAAAA+GGG | + | chr5_4:17169328-17169347 | None:intergenic | 20.0% |
| !!! | AATACTTTGAAAGAAACAAA+AGG | + | chr5_4:17169329-17169348 | None:intergenic | 20.0% |
| !!! | TTCAAAGTATTCTGATTATA+CGG | - | chr5_4:17169338-17169357 | Msa0841170:CDS | 20.0% |
| !! | ACATATTTAGAAAGACAAAA+TGG | + | chr5_4:17169483-17169502 | None:intergenic | 20.0% |
| !! | TACACATTAATCTATTCTTT+GGG | - | chr5_4:17169933-17169952 | Msa0841170:intron | 20.0% |
| !! | AACTATGTCTAATATGTATA+GGG | + | chr5_4:17169975-17169994 | None:intergenic | 20.0% |
| !! | AAACTATGTCTAATATGTAT+AGG | + | chr5_4:17169976-17169995 | None:intergenic | 20.0% |
| !! | TAGTTTCTAAATGTATTGAA+AGG | - | chr5_4:17169990-17170009 | Msa0841170:intron | 20.0% |
| !!! | ACACTTTATTTATTATCAAG+TGG | + | chr5_4:17170209-17170228 | None:intergenic | 20.0% |
| !!! | CAATAAGGAAAGATTTTTAA+AGG | - | chr5_4:17170362-17170381 | Msa0841170:intron | 20.0% |
| !! | TTATAACTAAGAACAATCAA+CGG | - | chr5_4:17170506-17170525 | Msa0841170:intron | 20.0% |
| !!! | TTTGAATATTGTGATTTTAG+TGG | - | chr5_4:17170559-17170578 | Msa0841170:intron | 20.0% |
| !!! | TTGAATATTGTGATTTTAGT+GGG | - | chr5_4:17170560-17170579 | Msa0841170:intron | 20.0% |
| !!! | CATTTATTTTCCTTACTAAT+TGG | + | chr5_4:17170637-17170656 | None:intergenic | 20.0% |
| !! | CAATTAGTAAGGAAAATAAA+TGG | - | chr5_4:17170635-17170654 | Msa0841170:intron | 20.0% |
| !! | TGGTATATAAGAAAATATCA+CGG | - | chr5_4:17171006-17171025 | Msa0841170:intron | 20.0% |
| !! | ATTTAGAGGTGATTTATAAA+AGG | - | chr5_4:17171662-17171681 | Msa0841170:intron | 20.0% |
| !! | TTTAGAGGTGATTTATAAAA+GGG | - | chr5_4:17171663-17171682 | Msa0841170:intron | 20.0% |
| !! | CTAATATACCTATTTAAACA+AGG | + | chr5_4:17172713-17172732 | None:intergenic | 20.0% |
| !! | CTAATATACCTATTTAAACA+AGG | + | chr5_4:17172713-17172732 | None:intergenic | 20.0% |
| !! | TTAATTAATTAATCACAGAG+GGG | + | chr5_4:17172822-17172841 | None:intergenic | 20.0% |
| !!! | TCAAATTTAGTTTTTGAAGT+TGG | + | chr5_4:17173574-17173593 | None:intergenic | 20.0% |
| !!! | ATACATGACTTTTAAATAAG+TGG | - | chr5_4:17173642-17173661 | Msa0841170:intron | 20.0% |
| !! | ATGAATAAGATAATAATGTG+TGG | + | chr5_4:17173700-17173719 | None:intergenic | 20.0% |
| !! | ATAAAAAACTACCCTACTTT+TGG | + | chr5_4:17167965-17167984 | None:intergenic | 25.0% |
| !!! | GTAGGGTAGTTTTTTATTTT+TGG | - | chr5_4:17167968-17167987 | Msa0841170:CDS | 25.0% |
| !!! | TTTTATTTCTTCTGACAACA+TGG | - | chr5_4:17168039-17168058 | Msa0841170:CDS | 25.0% |
| ! | AACATGGATCTTTAATAAGT+TGG | - | chr5_4:17168055-17168074 | Msa0841170:CDS | 25.0% |
| !! | AGTGGAAAATATAACTTTTG+CGG | + | chr5_4:17168111-17168130 | None:intergenic | 25.0% |
| ! | TTGCTTATAATTAAAAACGG+AGG | - | chr5_4:17168307-17168326 | Msa0841170:CDS | 25.0% |
| ! | TGCTTATAATTAAAAACGGA+GGG | - | chr5_4:17168308-17168327 | Msa0841170:CDS | 25.0% |
| ! | TATAATTCACAGGTCAAATT+TGG | - | chr5_4:17168381-17168400 | Msa0841170:intron | 25.0% |
| ! | ACATTACTCAAATGTTAGAA+TGG | + | chr5_4:17168611-17168630 | None:intergenic | 25.0% |
| ! | TTGGAATTTCATTTCTTAAC+AGG | - | chr5_4:17168822-17168841 | Msa0841170:intron | 25.0% |
| ! | TTCTATTAAAGGGTAAGTTT+CGG | + | chr5_4:17169092-17169111 | None:intergenic | 25.0% |
| ! | GTACACATTAATCTATTCTT+TGG | - | chr5_4:17169932-17169951 | Msa0841170:intron | 25.0% |
| ! | ATTGTATGAGATGTTACAAA+TGG | - | chr5_4:17170297-17170316 | Msa0841170:intron | 25.0% |
| !!! | TAAGGAAAGATTTTTAAAGG+AGG | - | chr5_4:17170365-17170384 | Msa0841170:intron | 25.0% |
| ! | AGCTAATGTTTATTAGCAAT+AGG | - | chr5_4:17170389-17170408 | Msa0841170:intron | 25.0% |
| ! | ATGTTTATTAGCAATAGGTA+AGG | - | chr5_4:17170394-17170413 | Msa0841170:intron | 25.0% |
| ! | TGTTTATTAGCAATAGGTAA+GGG | - | chr5_4:17170395-17170414 | Msa0841170:intron | 25.0% |
| ! | TAGTTATAACGCTTAAGATT+GGG | + | chr5_4:17170495-17170514 | None:intergenic | 25.0% |
| ! | TTAGTTATAACGCTTAAGAT+TGG | + | chr5_4:17170496-17170515 | None:intergenic | 25.0% |
| ! | TCGATTCAATATTGTATCTT+AGG | - | chr5_4:17171271-17171290 | Msa0841170:CDS | 25.0% |
| ! | AATTTGAAAAGTAAGCGAAA+TGG | + | chr5_4:17171488-17171507 | None:intergenic | 25.0% |
| !!! | ATTTCGCTTACTTTTCAAAT+TGG | - | chr5_4:17171487-17171506 | Msa0841170:CDS | 25.0% |
| !!! | TTTCGCTTACTTTTCAAATT+GGG | - | chr5_4:17171488-17171507 | Msa0841170:CDS | 25.0% |
| ! | TGCAAACTTATAATGTTACA+CGG | - | chr5_4:17171538-17171557 | Msa0841170:intron | 25.0% |
| !! | TTGTATTTTATAAAGGACAC+TGG | + | chr5_4:17171698-17171717 | None:intergenic | 25.0% |
| ! | AATGAATACTATATGTGTAG+TGG | + | chr5_4:17171751-17171770 | None:intergenic | 25.0% |
| !! | GAGTATCATTCCAATTTTAT+CGG | - | chr5_4:17171967-17171986 | Msa0841170:intron | 25.0% |
| ! | GAGTAAATAATGAATGAGAT+TGG | - | chr5_4:17172013-17172032 | Msa0841170:intron | 25.0% |
| !!! | TTTGAATTGTTTTTCCTCTT+TGG | + | chr5_4:17172198-17172217 | None:intergenic | 25.0% |
| ! | CTGAAGATTATTAATCTTCT+CGG | - | chr5_4:17172318-17172337 | Msa0841170:intron | 25.0% |
| ! | ATCAACACACATATATAACA+GGG | + | chr5_4:17172581-17172600 | None:intergenic | 25.0% |
| ! | TATCAACACACATATATAAC+AGG | + | chr5_4:17172582-17172601 | None:intergenic | 25.0% |
| !!! | CTTTTACGCATTTTTTTTTC+AGG | - | chr5_4:17172612-17172631 | Msa0841170:intron | 25.0% |
| ! | GAATGATTGTACTTACAATA+AGG | + | chr5_4:17172797-17172816 | None:intergenic | 25.0% |
| !! | TATATTTTCCTTATTCCTGA+TGG | + | chr5_4:17172871-17172890 | None:intergenic | 25.0% |
| ! | TTTATAGATGCAATGAGAAA+GGG | - | chr5_4:17173033-17173052 | Msa0841170:intron | 25.0% |
| ! | GCCATTGATAAAAATAAAAG+AGG | - | chr5_4:17173075-17173094 | Msa0841170:intron | 25.0% |
| !!! | GCCTCTTTTATTTTTATCAA+TGG | + | chr5_4:17173079-17173098 | None:intergenic | 25.0% |
| ! | AAAGTCATGTATCTCAAAAT+TGG | + | chr5_4:17173634-17173653 | None:intergenic | 25.0% |
| !! | CTTATTGTGAAATTTTGTGT+AGG | - | chr5_4:17173768-17173787 | Msa0841170:intron | 25.0% |
| ! | AAAATATAACTTTTGCGGGT+CGG | + | chr5_4:17168106-17168125 | None:intergenic | 30.0% |
| ! | GTGGAAAATATAACTTTTGC+GGG | + | chr5_4:17168110-17168129 | None:intergenic | 30.0% |
| GAAATTCACACAAGATAAAG+TGG | + | chr5_4:17168129-17168148 | None:intergenic | 30.0% | |
| ATGAGACTTGTCAAAGATTA+AGG | + | chr5_4:17168739-17168758 | None:intergenic | 30.0% | |
| TGGGACATTCTATTATATGT+CGG | - | chr5_4:17168856-17168875 | Msa0841170:intron | 30.0% | |
| ! | TTATCTCTTTTATCCACCTT+TGG | - | chr5_4:17169150-17169169 | Msa0841170:intron | 30.0% |
| ! | TATCTCTTTTATCCACCTTT+GGG | - | chr5_4:17169151-17169170 | Msa0841170:intron | 30.0% |
| !! | ATGTAAGTTTGACTCGATTT+TGG | - | chr5_4:17169221-17169240 | Msa0841170:CDS | 30.0% |
| !!! | CACTCGGTTTTTAAAGTTTA+AGG | - | chr5_4:17169377-17169396 | Msa0841170:intron | 30.0% |
| TCTTGTTAGAAACTATCTTG+TGG | - | chr5_4:17169654-17169673 | Msa0841170:intron | 30.0% | |
| CTTGTTAGAAACTATCTTGT+GGG | - | chr5_4:17169655-17169674 | Msa0841170:intron | 30.0% | |
| CTAAGACTGAATATGAGATT+TGG | - | chr5_4:17169728-17169747 | Msa0841170:intron | 30.0% | |
| CATATCATTCAACTAACATG+TGG | - | chr5_4:17169775-17169794 | Msa0841170:intron | 30.0% | |
| CTAATATGAGTAAGATTCTC+TGG | + | chr5_4:17169802-17169821 | None:intergenic | 30.0% | |
| TAAAGAAGCCTGGAATAAAT+TGG | - | chr5_4:17169837-17169856 | Msa0841170:intron | 30.0% | |
| AAAGAAGCCTGGAATAAATT+GGG | - | chr5_4:17169838-17169857 | Msa0841170:intron | 30.0% | |
| TATATACCTTGCTCAATATC+TGG | + | chr5_4:17169895-17169914 | None:intergenic | 30.0% | |
| ATAAATAAAGTGTGTGAGTG+AGG | - | chr5_4:17170216-17170235 | Msa0841170:intron | 30.0% | |
| TGAGATGTTACAAATGGTAT+TGG | - | chr5_4:17170303-17170322 | Msa0841170:intron | 30.0% | |
| AGTTATAACGCTTAAGATTG+GGG | + | chr5_4:17170494-17170513 | None:intergenic | 30.0% | |
| ATATTAGGGTCCAATTAGTA+AGG | - | chr5_4:17170624-17170643 | Msa0841170:intron | 30.0% | |
| !! | ACATACATGCTTTAATTTGC+AGG | - | chr5_4:17170687-17170706 | Msa0841170:intron | 30.0% |
| ATGCAAACTCGTTTATTATG+AGG | - | chr5_4:17170778-17170797 | Msa0841170:intron | 30.0% | |
| TGCAAACTCGTTTATTATGA+GGG | - | chr5_4:17170779-17170798 | Msa0841170:intron | 30.0% | |
| AATATATTCCACATCCTCTA+TGG | - | chr5_4:17170812-17170831 | Msa0841170:CDS | 30.0% | |
| ATATATTCCACATCCTCTAT+GGG | - | chr5_4:17170813-17170832 | Msa0841170:CDS | 30.0% | |
| AATTGTGAAGAAATTGGTGA+AGG | - | chr5_4:17170878-17170897 | Msa0841170:CDS | 30.0% | |
| TTATCTATGAAGACCAATGA+TGG | - | chr5_4:17171041-17171060 | Msa0841170:intron | 30.0% | |
| ACCATTGCGATAATTATCAT+CGG | + | chr5_4:17171153-17171172 | None:intergenic | 30.0% | |
| TGTATCACTGCAGAAATATT+TGG | - | chr5_4:17171191-17171210 | Msa0841170:CDS | 30.0% | |
| TCAATATTGTATCTTAGGTG+TGG | - | chr5_4:17171276-17171295 | Msa0841170:intron | 30.0% | |
| GGAGATGTTAAATTAAGTGT+TGG | + | chr5_4:17171730-17171749 | None:intergenic | 30.0% | |
| ! | AGAGTTTTACATGATCTGTT+TGG | - | chr5_4:17171822-17171841 | Msa0841170:intron | 30.0% |
| TACATGATCTGTTTGGAAAT+TGG | - | chr5_4:17171829-17171848 | Msa0841170:intron | 30.0% | |
| ! | AGTGAAGTTTGATGAGTTTT+TGG | + | chr5_4:17171902-17171921 | None:intergenic | 30.0% |
| AGACCAACTTTACAAAATTG+AGG | - | chr5_4:17171945-17171964 | Msa0841170:intron | 30.0% | |
| ! | ACTCCTCAATTTTGTAAAGT+TGG | + | chr5_4:17171951-17171970 | None:intergenic | 30.0% |
| GGTAATCTCAAAACTAAAAG+CGG | + | chr5_4:17172122-17172141 | None:intergenic | 30.0% | |
| !! | AGAGAAGTGCATGAATTTTA+CGG | - | chr5_4:17172146-17172165 | Msa0841170:intron | 30.0% |
| !! | AAGCTCTAGAAAGAAGAATT+AGG | + | chr5_4:17172251-17172270 | None:intergenic | 30.0% |
| ! | GTTTTTCTACAATATGCGAA+TGG | - | chr5_4:17172290-17172309 | Msa0841170:intron | 30.0% |
| ! | TCACATGTCATTTCAGAATT+CGG | - | chr5_4:17172653-17172672 | Msa0841170:intron | 30.0% |
| ! | TTATTCCTGATGGATACAAT+TGG | + | chr5_4:17172861-17172880 | None:intergenic | 30.0% |
| AATTGTATCCATCAGGAATA+AGG | - | chr5_4:17172860-17172879 | Msa0841170:intron | 30.0% | |
| TCAATATTTCAAGAGCTACA+CGG | + | chr5_4:17172912-17172931 | None:intergenic | 30.0% | |
| CCTTAAACTCTTGAATTCTT+TGG | + | chr5_4:17172945-17172964 | None:intergenic | 30.0% | |
| CCAAAGAATTCAAGAGTTTA+AGG | - | chr5_4:17172942-17172961 | Msa0841170:intron | 30.0% | |
| GTTTATAGATGCAATGAGAA+AGG | - | chr5_4:17173032-17173051 | Msa0841170:intron | 30.0% | |
| ATCATGTATGAGTTCGAAAA+CGG | + | chr5_4:17173136-17173155 | None:intergenic | 30.0% | |
| ATACATGATGCAACTGTAAA+TGG | - | chr5_4:17173147-17173166 | Msa0841170:intron | 30.0% | |
| AGATGCAAAGAGAAATTCTA+TGG | - | chr5_4:17173283-17173302 | Msa0841170:intron | 30.0% | |
| AAGAGAAATTCTATGGTTCA+AGG | - | chr5_4:17173290-17173309 | Msa0841170:intron | 30.0% | |
| TTTCACAATAAGTTATAGCG+CGG | + | chr5_4:17173760-17173779 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCTTCCTTACACTT+GGG | + | chr5_4:17173814-17173833 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCTTCCTTACACT+TGG | + | chr5_4:17173815-17173834 | None:intergenic | 30.0% |
| ! | TCTTTTCACTTCTTCAACTT+CGG | - | chr5_4:17174071-17174090 | Msa0841170:intron | 30.0% |
| ! | AAATATAACTTTTGCGGGTC+GGG | + | chr5_4:17168105-17168124 | None:intergenic | 35.0% |
| ACATTGATGTAGCGTTACAT+CGG | - | chr5_4:17168441-17168460 | Msa0841170:intron | 35.0% | |
| ACATATAGGATTGATGAGAG+AGG | + | chr5_4:17168979-17168998 | None:intergenic | 35.0% | |
| TCTCATCAATCCTATATGTC+CGG | - | chr5_4:17168980-17168999 | Msa0841170:CDS | 35.0% | |
| TAAACTATGTCCAAACCCAA+AGG | + | chr5_4:17169169-17169188 | None:intergenic | 35.0% | |
| AAGAAACAAAAGGGAGCAAA+CGG | + | chr5_4:17169319-17169338 | None:intergenic | 35.0% | |
| GAAAACGATTATAGTGTCAG+TGG | + | chr5_4:17169429-17169448 | None:intergenic | 35.0% | |
| ! | CTGAATATGAGATTTGGAAC+AGG | - | chr5_4:17169734-17169753 | Msa0841170:intron | 35.0% |
| ! | AGATTTGGAACAGGAAGAAT+GGG | - | chr5_4:17169743-17169762 | Msa0841170:intron | 35.0% |
| TTCATATTGCTAAAGAAGCC+TGG | - | chr5_4:17169827-17169846 | Msa0841170:intron | 35.0% | |
| ! | TAAGTGTCTTTTGTGAGTCA+TGG | - | chr5_4:17170026-17170045 | Msa0841170:intron | 35.0% |
| ATTAAGTCCTGTCTCATAGT+CGG | + | chr5_4:17170058-17170077 | None:intergenic | 35.0% | |
| AAGAACAATCAACGGCATTT+AGG | - | chr5_4:17170514-17170533 | Msa0841170:intron | 35.0% | |
| TGTGCAGCGATTTATATTGA+AGG | + | chr5_4:17170731-17170750 | None:intergenic | 35.0% | |
| TATATTCCACATCCTCTATG+GGG | - | chr5_4:17170814-17170833 | Msa0841170:CDS | 35.0% | |
| CGAGGAAATTGTGAAGAAAT+TGG | - | chr5_4:17170872-17170891 | Msa0841170:CDS | 35.0% | |
| TGAAGAAATTGGTGAAGGAA+GGG | - | chr5_4:17170883-17170902 | Msa0841170:CDS | 35.0% | |
| GTGAAAATGAAAGACAATCG+AGG | - | chr5_4:17170918-17170937 | Msa0841170:CDS | 35.0% | |
| TATAGCGAAGTGTATGACTA+TGG | - | chr5_4:17170986-17171005 | Msa0841170:intron | 35.0% | |
| TAAGAAAATATCACGGTCAG+AGG | - | chr5_4:17171013-17171032 | Msa0841170:intron | 35.0% | |
| !! | CATTGGTCTTCATAGATAAC+AGG | + | chr5_4:17171040-17171059 | None:intergenic | 35.0% |
| ! | CGATTCAAAGTGTGATTTGT+GGG | + | chr5_4:17171341-17171360 | None:intergenic | 35.0% |
| CCACAAATCACACTTTGAAT+CGG | - | chr5_4:17171339-17171358 | Msa0841170:CDS | 35.0% | |
| ! | CTTTTCAAATTGGGTCATCT+CGG | - | chr5_4:17171497-17171516 | Msa0841170:CDS | 35.0% |
| AATTCATGCACTTCTCTTTC+AGG | + | chr5_4:17172143-17172162 | None:intergenic | 35.0% | |
| !! | GAGAAGTGCATGAATTTTAC+GGG | - | chr5_4:17172147-17172166 | Msa0841170:intron | 35.0% |
| TCTTGCAAATATTGCCAAAG+AGG | - | chr5_4:17172181-17172200 | Msa0841170:intron | 35.0% | |
| CAATTCAAAGCTTCTTTCGT+AGG | - | chr5_4:17172209-17172228 | Msa0841170:intron | 35.0% | |
| !! | ATCTTCTCGGTTGTTTCTTT+AGG | - | chr5_4:17172331-17172350 | Msa0841170:intron | 35.0% |
| ! | GTTTCTTTAGGAAGGTTATG+TGG | - | chr5_4:17172343-17172362 | Msa0841170:CDS | 35.0% |
| AAGATCACAGATCACAACAA+GGG | + | chr5_4:17172483-17172502 | None:intergenic | 35.0% | |
| AAAGATCACAGATCACAACA+AGG | + | chr5_4:17172484-17172503 | None:intergenic | 35.0% | |
| TCGGTACTATTAAAGTTCTC+TGG | - | chr5_4:17172672-17172691 | Msa0841170:intron | 35.0% | |
| ATTAATTAATCACAGAGGGG+AGG | + | chr5_4:17172819-17172838 | None:intergenic | 35.0% | |
| TAAGGAATCAGAACTTAGAG+AGG | - | chr5_4:17172960-17172979 | Msa0841170:intron | 35.0% | |
| ! | TTTTATCAATGGCCCATAAG+AGG | + | chr5_4:17173068-17173087 | None:intergenic | 35.0% |
| ATGATGCAACTGTAAATGGA+CGG | - | chr5_4:17173151-17173170 | Msa0841170:intron | 35.0% | |
| GCTTATATGTTGGAACAAAG+AGG | - | chr5_4:17173369-17173388 | Msa0841170:intron | 35.0% | |
| GAGAAGAGATTAGAGAGTTT+AGG | - | chr5_4:17173430-17173449 | Msa0841170:intron | 35.0% | |
| GTTGGTTGTGAAGTTGTTAT+AGG | + | chr5_4:17173556-17173575 | None:intergenic | 35.0% | |
| TATAGCGCGGTTAAAATTCA+TGG | + | chr5_4:17173747-17173766 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCCTTACACTTG+GGG | + | chr5_4:17173813-17173832 | None:intergenic | 35.0% |
| CTTTCTGTAAATAACTCACG+AGG | + | chr5_4:17173853-17173872 | None:intergenic | 35.0% | |
| GTTATTTACAGAAAGCCACA+AGG | - | chr5_4:17173858-17173877 | Msa0841170:intron | 35.0% | |
| TTAGGATTCCAATGAAGAGA+AGG | + | chr5_4:17174098-17174117 | None:intergenic | 35.0% | |
| TCTCTTCATTGGAATCCTAA+CGG | - | chr5_4:17174098-17174117 | Msa0841170:intron | 35.0% | |
| AGAAACCACAGAGAAGAAAA+GGG | + | chr5_4:17174187-17174206 | None:intergenic | 35.0% | |
| TAGAAACCACAGAGAAGAAA+AGG | + | chr5_4:17174188-17174207 | None:intergenic | 35.0% | |
| !! | TTCACTTGCTATGCTCTTAA+AGG | - | chr5_4:17174227-17174246 | Msa0841170:intron | 35.0% |
| !! | TCACTTGCTATGCTCTTAAA+GGG | - | chr5_4:17174228-17174247 | Msa0841170:intron | 35.0% |
| ACTTGAAAATCTCAAGGAAG+AGG | + | chr5_4:17174329-17174348 | None:intergenic | 35.0% | |
| CTGTAGACTTGAAAATCTCA+AGG | + | chr5_4:17174335-17174354 | None:intergenic | 35.0% | |
| ! | CAAGTTGGACTTGAGACATA+GGG | - | chr5_4:17167901-17167920 | Msa0841170:CDS | 40.0% |
| ACATAGGGTATGTCTCAAGT+TGG | - | chr5_4:17167916-17167935 | Msa0841170:CDS | 40.0% | |
| !! | TCAAGTTGGACTTGAGACAT+AGG | - | chr5_4:17167930-17167949 | Msa0841170:CDS | 40.0% |
| ! | CAAGTTGGACTTGAGACATA+GGG | - | chr5_4:17167901-17167920 | Msa0841170:CDS | 40.0% |
| AGGGTCAACTTTCCAAAAGT+AGG | - | chr5_4:17167950-17167969 | Msa0841170:CDS | 40.0% | |
| GGGTCAACTTTCCAAAAGTA+GGG | - | chr5_4:17167951-17167970 | Msa0841170:CDS | 40.0% | |
| ! | AATATAACTTTTGCGGGTCG+GGG | + | chr5_4:17168104-17168123 | None:intergenic | 40.0% |
| TTAACAGGCGACGATGATTT+GGG | - | chr5_4:17168837-17168856 | Msa0841170:intron | 40.0% | |
| TAGGATTGATGAGAGAGGAT+GGG | + | chr5_4:17168974-17168993 | None:intergenic | 40.0% | |
| ATAGGATTGATGAGAGAGGA+TGG | + | chr5_4:17168975-17168994 | None:intergenic | 40.0% | |
| TCTCATAACACCGGACATAT+AGG | + | chr5_4:17168993-17169012 | None:intergenic | 40.0% | |
| !! | CTTTTATCCACCTTTGGGTT+TGG | - | chr5_4:17169156-17169175 | Msa0841170:intron | 40.0% |
| ! | TGCTCTAACTTTTCTCACGT+TGG | - | chr5_4:17169244-17169263 | Msa0841170:CDS | 40.0% |
| TGGAACAAGAGAAAGCAACA+TGG | + | chr5_4:17169463-17169482 | None:intergenic | 40.0% | |
| TTCTACTGCTTCACAATCTG+TGG | + | chr5_4:17169558-17169577 | None:intergenic | 40.0% | |
| ! | CCAGTTTTCGTAGTTGTCTT+TGG | + | chr5_4:17169629-17169648 | None:intergenic | 40.0% |
| CCAAAGACAACTACGAAAAC+TGG | - | chr5_4:17169626-17169645 | Msa0841170:intron | 40.0% | |
| AGAAACTATCTTGTGGGACA+TGG | - | chr5_4:17169661-17169680 | Msa0841170:intron | 40.0% | |
| GTGACCTCTATTCCTGAAAT+TGG | - | chr5_4:17169697-17169716 | Msa0841170:intron | 40.0% | |
| ! | GAGATTTGGAACAGGAAGAA+TGG | - | chr5_4:17169742-17169761 | Msa0841170:intron | 40.0% |
| AGTTGCACCCAATTTATTCC+AGG | + | chr5_4:17169848-17169867 | None:intergenic | 40.0% | |
| ACCTTGCTCAATATCTGGAT+CGG | + | chr5_4:17169890-17169909 | None:intergenic | 40.0% | |
| !! | AAAAGAATCGTGTTGACTCG+TGG | - | chr5_4:17170252-17170271 | Msa0841170:intron | 40.0% |
| !! | AAAGAATCGTGTTGACTCGT+GGG | - | chr5_4:17170253-17170272 | Msa0841170:intron | 40.0% |
| TAGGTAAGGGAGAAGCAATA+AGG | - | chr5_4:17170408-17170427 | Msa0841170:intron | 40.0% | |
| AATCAACGGCATTTAGGCTT+TGG | - | chr5_4:17170520-17170539 | Msa0841170:intron | 40.0% | |
| ATCAACGGCATTTAGGCTTT+GGG | - | chr5_4:17170521-17170540 | Msa0841170:intron | 40.0% | |
| !! | CATGCTTTAATTTGCAGGTG+TGG | - | chr5_4:17170692-17170711 | Msa0841170:intron | 40.0% |
| CTGCACAAGTATATTGAGAG+CGG | - | chr5_4:17170744-17170763 | Msa0841170:intron | 40.0% | |
| GTGAAGAAATTGGTGAAGGA+AGG | - | chr5_4:17170882-17170901 | Msa0841170:CDS | 40.0% | |
| CTTCGCTATATTCGTGTTTC+CGG | + | chr5_4:17170976-17170995 | None:intergenic | 40.0% | |
| AACAGGGATTTCACCATCAT+TGG | + | chr5_4:17171057-17171076 | None:intergenic | 40.0% | |
| GCCGATGATAATTATCGCAA+TGG | - | chr5_4:17171149-17171168 | Msa0841170:CDS | 40.0% | |
| ! | CTGCAGAAATATTTGGTTCG+TGG | - | chr5_4:17171198-17171217 | Msa0841170:CDS | 40.0% |
| CCGATTCAAAGTGTGATTTG+TGG | + | chr5_4:17171342-17171361 | None:intergenic | 40.0% | |
| TGTGCAACCATTATACGCAT+TGG | - | chr5_4:17171366-17171385 | Msa0841170:CDS | 40.0% | |
| !! | TTTCCAAGTGGTAGTGGATA+TGG | - | chr5_4:17171406-17171425 | Msa0841170:CDS | 40.0% |
| !! | TTCCAAGTGGTAGTGGATAT+GGG | - | chr5_4:17171407-17171426 | Msa0841170:CDS | 40.0% |
| TTACTCCTCAATTGTCCCTT+CGG | + | chr5_4:17171999-17172018 | None:intergenic | 40.0% | |
| !! | AAGCGGAAGTAGATTAGTCT+TGG | + | chr5_4:17172105-17172124 | None:intergenic | 40.0% |
| CAAAGCTTCTTTCGTAGGTA+TGG | - | chr5_4:17172214-17172233 | Msa0841170:intron | 40.0% | |
| !! | TCTCGGTTGTTTCTTTAGGA+AGG | - | chr5_4:17172335-17172354 | Msa0841170:CDS | 40.0% |
| ! | CTTTAGGAAGGTTATGTGGA+CGG | - | chr5_4:17172347-17172366 | Msa0841170:CDS | 40.0% |
| TTTATCGCCAGTAAAGCAGT+TGG | - | chr5_4:17172378-17172397 | Msa0841170:CDS | 40.0% | |
| TTATCGCCAGTAAAGCAGTT+GGG | - | chr5_4:17172379-17172398 | Msa0841170:CDS | 40.0% | |
| AACTTACCCAACTGCTTTAC+TGG | + | chr5_4:17172388-17172407 | None:intergenic | 40.0% | |
| TCTGGATTACAAGACGTATC+CGG | + | chr5_4:17172531-17172550 | None:intergenic | 40.0% | |
| TCTTGTAATCCAGACCCTAA+GGG | - | chr5_4:17172537-17172556 | Msa0841170:CDS | 40.0% | |
| GCTTTGTATTCACACCCTTA+GGG | + | chr5_4:17172554-17172573 | None:intergenic | 40.0% | |
| CACACATATATAACAGGGAC+TGG | + | chr5_4:17172576-17172595 | None:intergenic | 40.0% | |
| ! | TCCTGATGGATACAATTGGA+GGG | + | chr5_4:17172857-17172876 | None:intergenic | 40.0% |
| ! | TTCCTGATGGATACAATTGG+AGG | + | chr5_4:17172858-17172877 | None:intergenic | 40.0% |
| TATTTCAAGAGCTACACGGT+AGG | + | chr5_4:17172908-17172927 | None:intergenic | 40.0% | |
| ATCAGAACTTAGAGAGGCTT+CGG | - | chr5_4:17172966-17172985 | Msa0841170:intron | 40.0% | |
| ! | GTTCGAAAACGGCTTTTCTA+CGG | + | chr5_4:17173125-17173144 | None:intergenic | 40.0% |
| AATTGCCAAATGCGTCTACA+CGG | + | chr5_4:17173194-17173213 | None:intergenic | 40.0% | |
| TTGCACTTGGCAGGATATTT+AGG | - | chr5_4:17173219-17173238 | Msa0841170:intron | 40.0% | |
| TGCACTTGGCAGGATATTTA+GGG | - | chr5_4:17173220-17173239 | Msa0841170:intron | 40.0% | |
| TCTGATCTTGATCGTAGATC+CGG | - | chr5_4:17173249-17173268 | Msa0841170:intron | 40.0% | |
| CATGCATGCAGCTTATATGT+TGG | - | chr5_4:17173359-17173378 | Msa0841170:intron | 40.0% | |
| ! | GTGAAATTTTGTGTAGGCAG+TGG | - | chr5_4:17173774-17173793 | Msa0841170:intron | 40.0% |
| ! | AAATTTTGTGTAGGCAGTGG+AGG | - | chr5_4:17173777-17173796 | Msa0841170:intron | 40.0% |
| AAATGGGCAAAAGATACAGC+TGG | - | chr5_4:17173901-17173920 | Msa0841170:intron | 40.0% | |
| ! | AGCTGGTTCATTTACTCTTG+TGG | - | chr5_4:17173918-17173937 | Msa0841170:intron | 40.0% |
| TGTCTTGATTGTTTCCACCA+GGG | + | chr5_4:17173987-17174006 | None:intergenic | 40.0% | |
| TTGTCTTGATTGTTTCCACC+AGG | + | chr5_4:17173988-17174007 | None:intergenic | 40.0% | |
| GGTGGAAACAATCAAGACAA+TGG | - | chr5_4:17173988-17174007 | Msa0841170:intron | 40.0% | |
| TCCTTAAGTCATTGCCACTA+AGG | - | chr5_4:17174142-17174161 | Msa0841170:intron | 40.0% | |
| ACCTTAGTGGCAATGACTTA+AGG | + | chr5_4:17174146-17174165 | None:intergenic | 40.0% | |
| AGTGCGAAAAGTAACCTTAG+TGG | + | chr5_4:17174159-17174178 | None:intergenic | 40.0% | |
| TAGAACGATAACAGGAACAC+TGG | + | chr5_4:17174289-17174308 | None:intergenic | 40.0% | |
| ! | GCAAGTTGGACTTGAGACAT+AGG | - | chr5_4:17167900-17167919 | Msa0841170:CDS | 45.0% |
| ! | ATATAACTTTTGCGGGTCGG+GGG | + | chr5_4:17168103-17168122 | None:intergenic | 45.0% |
| CTTAACAGGCGACGATGATT+TGG | - | chr5_4:17168836-17168855 | Msa0841170:intron | 45.0% | |
| !! | ATGTCCGGTGTTATGAGACA+TGG | - | chr5_4:17168995-17169014 | Msa0841170:CDS | 45.0% |
| GATGCCATGTCTCATAACAC+CGG | + | chr5_4:17169002-17169021 | None:intergenic | 45.0% | |
| GTTATGAGACATGGCATCCA+TGG | - | chr5_4:17169004-17169023 | Msa0841170:CDS | 45.0% | |
| ACTATGTCCAAACCCAAAGG+TGG | + | chr5_4:17169166-17169185 | None:intergenic | 45.0% | |
| ACAAAAGGGAGCAAACGGAT+TGG | + | chr5_4:17169314-17169333 | None:intergenic | 45.0% | |
| AAACTGAGCACTCACACACT+CGG | - | chr5_4:17169361-17169380 | Msa0841170:intron | 45.0% | |
| TCGTAGTTGTCTTTGGTCAG+TGG | + | chr5_4:17169622-17169641 | None:intergenic | 45.0% | |
| CGCACCAATTTCAGGAATAG+AGG | + | chr5_4:17169704-17169723 | None:intergenic | 45.0% | |
| TTAGAACGCGCACCAATTTC+AGG | + | chr5_4:17169712-17169731 | None:intergenic | 45.0% | |
| TTGGAACAGGAAGAATGGGA+AGG | - | chr5_4:17169747-17169766 | Msa0841170:intron | 45.0% | |
| GACTAAACCGACTATGAGAC+AGG | - | chr5_4:17170048-17170067 | Msa0841170:intron | 45.0% | |
| !! | AAGAATCGTGTTGACTCGTG+GGG | - | chr5_4:17170254-17170273 | Msa0841170:intron | 45.0% |
| AAACCTCTCCCAAGATGATG+TGG | - | chr5_4:17170326-17170345 | Msa0841170:intron | 45.0% | |
| AAACCACATCATCTTGGGAG+AGG | + | chr5_4:17170332-17170351 | None:intergenic | 45.0% | |
| TCTCCCAAGATGATGTGGTT+TGG | - | chr5_4:17170331-17170350 | Msa0841170:intron | 45.0% | |
| CTCCCAAGATGATGTGGTTT+GGG | - | chr5_4:17170332-17170351 | Msa0841170:intron | 45.0% | |
| TCCCAAGATGATGTGGTTTG+GGG | - | chr5_4:17170333-17170352 | Msa0841170:intron | 45.0% | |
| TCCCCAAACCACATCATCTT+GGG | + | chr5_4:17170337-17170356 | None:intergenic | 45.0% | |
| !! | GCTTTAATTTGCAGGTGTGG+TGG | - | chr5_4:17170695-17170714 | Msa0841170:intron | 45.0% |
| AGTATATTGAGAGCGGTGAG+TGG | - | chr5_4:17170751-17170770 | Msa0841170:intron | 45.0% | |
| AACTACCGCAACGTGAAGAA+CGG | + | chr5_4:17170844-17170863 | None:intergenic | 45.0% | |
| TAGCAGCAGCAAGAAGAACA+GGG | + | chr5_4:17171073-17171092 | None:intergenic | 45.0% | |
| TTAGCAGCAGCAAGAAGAAC+AGG | + | chr5_4:17171074-17171093 | None:intergenic | 45.0% | |
| TGTTCTTCTTGCTGCTGCTA+AGG | - | chr5_4:17171073-17171092 | Msa0841170:CDS | 45.0% | |
| GTTCTTCTTGCTGCTGCTAA+GGG | - | chr5_4:17171074-17171093 | Msa0841170:CDS | 45.0% | |
| TCTTTACCGTTGTACACCGT+TGG | - | chr5_4:17171118-17171137 | Msa0841170:CDS | 45.0% | |
| TGCGATAATTATCATCGGCC+AGG | + | chr5_4:17171148-17171167 | None:intergenic | 45.0% | |
| ! | GAGGCATTTGAGGAAATCGT+TGG | + | chr5_4:17171315-17171334 | None:intergenic | 45.0% |
| ! | AAGTGTGATTTGTGGGCAAG+AGG | + | chr5_4:17171334-17171353 | None:intergenic | 45.0% |
| ATGCGTGCCAATGCGTATAA+TGG | + | chr5_4:17171376-17171395 | None:intergenic | 45.0% | |
| ATGCCTTCTGTGTTTCCAAG+TGG | - | chr5_4:17171394-17171413 | Msa0841170:CDS | 45.0% | |
| CTACCACTTGGAAACACAGA+AGG | + | chr5_4:17171400-17171419 | None:intergenic | 45.0% | |
| TCTGTGTTTCCAAGTGGTAG+TGG | - | chr5_4:17171400-17171419 | Msa0841170:CDS | 45.0% | |
| AACCCATATCCACTACCACT+TGG | + | chr5_4:17171412-17171431 | None:intergenic | 45.0% | |
| TCGGGGACATCCGATAAAAT+TGG | + | chr5_4:17171980-17171999 | None:intergenic | 45.0% | |
| ! | ATTTTATCGGATGTCCCCGA+AGG | - | chr5_4:17171980-17171999 | Msa0841170:intron | 45.0% |
| ! | TTTTATCGGATGTCCCCGAA+GGG | - | chr5_4:17171981-17172000 | Msa0841170:intron | 45.0% |
| TACTCCTCAATTGTCCCTTC+GGG | + | chr5_4:17171998-17172017 | None:intergenic | 45.0% | |
| GTCTTGTAATCCAGACCCTA+AGG | - | chr5_4:17172536-17172555 | Msa0841170:CDS | 45.0% | |
| ! | GGCTTTGTATTCACACCCTT+AGG | + | chr5_4:17172555-17172574 | None:intergenic | 45.0% |
| TCCCTCCAATTGTATCCATC+AGG | - | chr5_4:17172853-17172872 | Msa0841170:intron | 45.0% | |
| ATGTTGCAAGCAGCAAAGCA+TGG | - | chr5_4:17173000-17173019 | Msa0841170:intron | 45.0% | |
| TGTTGCAAGCAGCAAAGCAT+GGG | - | chr5_4:17173001-17173020 | Msa0841170:intron | 45.0% | |
| AGGGTAATCCTGACCTCTTA+TGG | - | chr5_4:17173052-17173071 | Msa0841170:intron | 45.0% | |
| GGGTAATCCTGACCTCTTAT+GGG | - | chr5_4:17173053-17173072 | Msa0841170:intron | 45.0% | |
| TGCAACTGTAAATGGACGGA+AGG | - | chr5_4:17173155-17173174 | Msa0841170:intron | 45.0% | |
| AAATGCCGTGTAGACGCATT+TGG | - | chr5_4:17173186-17173205 | Msa0841170:intron | 45.0% | |
| TGGCAATTCCATGTTGCACT+TGG | - | chr5_4:17173206-17173225 | Msa0841170:intron | 45.0% | |
| AATTCCATGTTGCACTTGGC+AGG | - | chr5_4:17173210-17173229 | Msa0841170:intron | 45.0% | |
| ATATCCTGCCAAGTGCAACA+TGG | + | chr5_4:17173217-17173236 | None:intergenic | 45.0% | |
| CTACGATCAAGATCAGAGGA+AGG | + | chr5_4:17173246-17173265 | None:intergenic | 45.0% | |
| GGATCTACGATCAAGATCAG+AGG | + | chr5_4:17173250-17173269 | None:intergenic | 45.0% | |
| TCTCTTTGCATCTGCATAGC+AGG | + | chr5_4:17173276-17173295 | None:intergenic | 45.0% | |
| CATGTATGTATGCGAGTGAG+TGG | + | chr5_4:17173343-17173362 | None:intergenic | 45.0% | |
| AATTGTGCACCCCAAGTGTA+AGG | - | chr5_4:17173801-17173820 | Msa0841170:intron | 45.0% | |
| ACAAGGAGCTAGTGAAAGCT+GGG | - | chr5_4:17173875-17173894 | Msa0841170:intron | 45.0% | |
| TAGTGAAAGCTGGGGAGAAA+TGG | - | chr5_4:17173884-17173903 | Msa0841170:intron | 45.0% | |
| AGTGAAAGCTGGGGAGAAAT+GGG | - | chr5_4:17173885-17173904 | Msa0841170:intron | 45.0% | |
| GTGATGTCGTGCAAGAACAA+GGG | + | chr5_4:17174018-17174037 | None:intergenic | 45.0% | |
| TGTGATGTCGTGCAAGAACA+AGG | + | chr5_4:17174019-17174038 | None:intergenic | 45.0% | |
| ACTTCGGTCCTTCTCTTCAT+TGG | - | chr5_4:17174087-17174106 | Msa0841170:intron | 45.0% | |
| ! | CATTGCCCTTTTCTTCTCTG+TGG | - | chr5_4:17174179-17174198 | Msa0841170:intron | 45.0% |
| CATAGCAAGTGAAGCACAGA+AGG | + | chr5_4:17174220-17174239 | None:intergenic | 45.0% | |
| GACGGAACTAGAACGATAAC+AGG | + | chr5_4:17174297-17174316 | None:intergenic | 45.0% | |
| ! | AGAGGAGGTATGTCGCAAGT+TGG | - | chr5_4:17167886-17167905 | Msa0841170:CDS | 50.0% |
| !! | AAGGGAGCAAACGGATTGGA+AGG | + | chr5_4:17169310-17169329 | None:intergenic | 50.0% |
| ! | AGAACAAGCATTGCAGCGAG+TGG | - | chr5_4:17169583-17169602 | Msa0841170:intron | 50.0% |
| ATCTTGTGGGACATGGTCTG+TGG | - | chr5_4:17169668-17169687 | Msa0841170:intron | 50.0% | |
| TCTTGTGGGACATGGTCTGT+GGG | - | chr5_4:17169669-17169688 | Msa0841170:intron | 50.0% | |
| GCCGATCCAGATATTGAGCA+AGG | - | chr5_4:17169886-17169905 | Msa0841170:intron | 50.0% | |
| !! | AGAATCGTGTTGACTCGTGG+GGG | - | chr5_4:17170255-17170274 | Msa0841170:intron | 50.0% |
| GTCCCCAAACCACATCATCT+TGG | + | chr5_4:17170338-17170357 | None:intergenic | 50.0% | |
| GGTTTGGGGACGAAGCAATA+AGG | - | chr5_4:17170347-17170366 | Msa0841170:intron | 50.0% | |
| !! | AACGGCATTTAGGCTTTGGG+TGG | - | chr5_4:17170524-17170543 | Msa0841170:intron | 50.0% |
| ATTCCACATCCTCTATGGGG+AGG | - | chr5_4:17170817-17170836 | Msa0841170:CDS | 50.0% | |
| TTCACGTTGCGGTAGTTGCT+GGG | - | chr5_4:17170847-17170866 | Msa0841170:CDS | 50.0% | |
| CAGCTCAGCAACAAGAGCTA+GGG | + | chr5_4:17170952-17170971 | None:intergenic | 50.0% | |
| TCAGCTCAGCAACAAGAGCT+AGG | + | chr5_4:17170953-17170972 | None:intergenic | 50.0% | |
| GGTCTTCCAACGGTGTACAA+CGG | + | chr5_4:17171127-17171146 | None:intergenic | 50.0% | |
| TTGTACACCGTTGGAAGACC+TGG | - | chr5_4:17171127-17171146 | Msa0841170:CDS | 50.0% | |
| !! | TTGTGGGCAAGAGGCATTTG+AGG | + | chr5_4:17171325-17171344 | None:intergenic | 50.0% |
| ACTCCTCAATTGTCCCTTCG+GGG | + | chr5_4:17171997-17172016 | None:intergenic | 50.0% | |
| TCACAACAAGGGTTCGCACA+AGG | + | chr5_4:17172472-17172491 | None:intergenic | 50.0% | |
| TCCGTTTGTGTGCTTTGCAC+CGG | - | chr5_4:17172509-17172528 | Msa0841170:CDS | 50.0% | |
| TCCGGTGCAAAGCACACAAA+CGG | + | chr5_4:17172513-17172532 | None:intergenic | 50.0% | |
| GTATTCACACCCTTAGGGTC+TGG | + | chr5_4:17172549-17172568 | None:intergenic | 50.0% | |
| TCAATGGCCCATAAGAGGTC+AGG | + | chr5_4:17173063-17173082 | None:intergenic | 50.0% | |
| TTGCATCTGCATAGCAGGAC+CGG | + | chr5_4:17173271-17173290 | None:intergenic | 50.0% | |
| CTCACGAGGCTTCTTATCGT+CGG | + | chr5_4:17173839-17173858 | None:intergenic | 50.0% | |
| CAGCTTTCACTAGCTCCTTG+TGG | + | chr5_4:17173876-17173895 | None:intergenic | 50.0% | |
| CACAAGGAGCTAGTGAAAGC+TGG | - | chr5_4:17173874-17173893 | Msa0841170:intron | 50.0% | |
| CAAGGAGCTAGTGAAAGCTG+GGG | - | chr5_4:17173876-17173895 | Msa0841170:intron | 50.0% | |
| TTTCAGCGTAACGAGCCGTT+AGG | + | chr5_4:17174116-17174135 | None:intergenic | 50.0% | |
| ! | AGGAAGAGGCGCAATTGTGA+CGG | + | chr5_4:17174315-17174334 | None:intergenic | 50.0% |
| CTTGTGGGACATGGTCTGTG+GGG | - | chr5_4:17169670-17169689 | Msa0841170:intron | 55.0% | |
| AAGAACGGTCCTCCCCATAG+AGG | + | chr5_4:17170829-17170848 | None:intergenic | 55.0% | |
| GAGGACCGTTCTTCACGTTG+CGG | - | chr5_4:17170836-17170855 | Msa0841170:CDS | 55.0% | |
| CTTCACGTTGCGGTAGTTGC+TGG | - | chr5_4:17170846-17170865 | Msa0841170:CDS | 55.0% | |
| GCTCTTGTTGCTGAGCTGAC+CGG | - | chr5_4:17170954-17170973 | Msa0841170:intron | 55.0% | |
| TCATCGGCCAGGTCTTCCAA+CGG | + | chr5_4:17171137-17171156 | None:intergenic | 55.0% | |
| TGTCCCCGAAGGGACAATTG+AGG | - | chr5_4:17171991-17172010 | Msa0841170:intron | 55.0% | |
| GGTCCTCCCCATAGAGGATG+TGG | + | chr5_4:17170823-17170842 | None:intergenic | 60.0% | |
| GCTGCAGCTTTCACTGTCCC+TGG | - | chr5_4:17173967-17173986 | Msa0841170:intron | 60.0% | |
| GCAGCTTTCACTGTCCCTGG+TGG | - | chr5_4:17173970-17173989 | Msa0841170:intron | 60.0% | |
| TGCGGTAGTTGCTGGGCACG+AGG | - | chr5_4:17170854-17170873 | Msa0841170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 17167872 | 17174368 | 17167872 | ID=Msa0841170;Name=Msa0841170 |
| chr5_4 | mRNA | 17167872 | 17174368 | 17167872 | ID=Msa0841170-mRNA-1;Parent=Msa0841170;Name=Msa0841170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.87|0.28|0.37|8|0|614 |
| chr5_4 | exon | 17174268 | 17174368 | 17174268 | ID=Msa0841170-mRNA-1:exon:7375;Parent=Msa0841170-mRNA-1 |
| chr5_4 | exon | 17172333 | 17172577 | 17172333 | ID=Msa0841170-mRNA-1:exon:7374;Parent=Msa0841170-mRNA-1 |
| chr5_4 | exon | 17171301 | 17171531 | 17171301 | ID=Msa0841170-mRNA-1:exon:7373;Parent=Msa0841170-mRNA-1 |
| chr5_4 | exon | 17171070 | 17171291 | 17171070 | ID=Msa0841170-mRNA-1:exon:7372;Parent=Msa0841170-mRNA-1 |
| chr5_4 | exon | 17170786 | 17170947 | 17170786 | ID=Msa0841170-mRNA-1:exon:7371;Parent=Msa0841170-mRNA-1 |
| chr5_4 | exon | 17169186 | 17169365 | 17169186 | ID=Msa0841170-mRNA-1:exon:7370;Parent=Msa0841170-mRNA-1 |
| chr5_4 | exon | 17168929 | 17169143 | 17168929 | ID=Msa0841170-mRNA-1:exon:7369;Parent=Msa0841170-mRNA-1 |
| chr5_4 | exon | 17167872 | 17168360 | 17167872 | ID=Msa0841170-mRNA-1:exon:7368;Parent=Msa0841170-mRNA-1 |
| chr5_4 | CDS | 17174268 | 17174368 | 17174268 | ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1 |
| chr5_4 | CDS | 17172333 | 17172577 | 17172333 | ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1 |
| chr5_4 | CDS | 17171301 | 17171531 | 17171301 | ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1 |
| chr5_4 | CDS | 17171070 | 17171291 | 17171070 | ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1 |
| chr5_4 | CDS | 17170786 | 17170947 | 17170786 | ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1 |
| chr5_4 | CDS | 17169186 | 17169365 | 17169186 | ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1 |
| chr5_4 | CDS | 17168929 | 17169143 | 17168929 | ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1 |
| chr5_4 | CDS | 17167872 | 17168360 | 17167872 | ID=Msa0841170-mRNA-1:cds;Parent=Msa0841170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
