Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646210 | XP_013456385.1 | 95.824 | 431 | 18 | 0 | 1 | 431 | 1 | 431 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646210 | sp|Q9LN62|RRA3_ARATH | 65.947 | 417 | 130 | 5 | 22 | 429 | 14 | 427 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646210 | A0A072UM19 | 95.824 | 431 | 18 | 0 | 1 | 431 | 1 | 431 | 0.0 | 852 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0646210 | 0.801167 | 1.022876e-48 | -8.615850e-47 |
| Msa0027860 | Msa0646210 | 0.815285 | 9.997483e-52 | -8.615850e-47 |
| Msa0048950 | Msa0646210 | 0.831157 | 1.957593e-55 | -8.615850e-47 |
| Msa0059880 | Msa0646210 | 0.856024 | 4.255125e-62 | -8.615850e-47 |
| Msa0072940 | Msa0646210 | 0.812739 | 3.642776e-51 | -8.615850e-47 |
| Msa0073270 | Msa0646210 | 0.803833 | 2.886214e-49 | -8.615850e-47 |
| Msa0603950 | Msa0646210 | 0.804912 | 1.719916e-49 | -8.615850e-47 |
| Msa0605400 | Msa0646210 | 0.800924 | 1.146854e-48 | -8.615850e-47 |
| Msa0605410 | Msa0646210 | 0.836555 | 8.738297e-57 | -8.615850e-47 |
| Msa0605470 | Msa0646210 | 0.827368 | 1.625874e-54 | -8.615850e-47 |
| Msa0623980 | Msa0646210 | 0.826816 | 2.204115e-54 | -8.615850e-47 |
| Msa0631700 | Msa0646210 | 0.800509 | 1.394109e-48 | -8.615850e-47 |
| Msa0634290 | Msa0646210 | 0.800138 | 1.658411e-48 | -8.615850e-47 |
| Msa0639410 | Msa0646210 | 0.801169 | 1.022223e-48 | -8.615850e-47 |
| Msa0643190 | Msa0646210 | 0.800878 | 1.172275e-48 | -8.615850e-47 |
| Msa0643840 | Msa0646210 | 0.821328 | 4.281280e-53 | -8.615850e-47 |
| Msa0646210 | Msa0668220 | 0.833370 | 5.546245e-56 | -8.615850e-47 |
| Msa0646210 | Msa0670260 | 0.854629 | 1.083490e-61 | -8.615850e-47 |
| Msa0646210 | Msa0670360 | 0.823983 | 1.032512e-53 | -8.615850e-47 |
| Msa0646210 | Msa0671490 | 0.807981 | 3.876399e-50 | -8.615850e-47 |
| Msa0646210 | Msa0671640 | 0.826498 | 2.624780e-54 | -8.615850e-47 |
| Msa0646210 | Msa0676190 | 0.806960 | 6.380803e-50 | -8.615850e-47 |
| Msa0646210 | Msa0678620 | 0.824582 | 7.465692e-54 | -8.615850e-47 |
| Msa0646210 | Msa0684720 | 0.802903 | 4.498389e-49 | -8.615850e-47 |
| Msa0646210 | Msa0711240 | 0.823502 | 1.338144e-53 | -8.615850e-47 |
| Msa0646210 | Msa0727480 | 0.837645 | 4.600652e-57 | -8.615850e-47 |
| Msa0646210 | Msa0735280 | 0.817909 | 2.581469e-52 | -8.615850e-47 |
| Msa0646210 | Msa0735340 | 0.811630 | 6.359512e-51 | -8.615850e-47 |
| Msa0646210 | Msa0751960 | 0.817704 | 2.872496e-52 | -8.615850e-47 |
| Msa0646210 | Msa0768670 | 0.831640 | 1.488710e-55 | -8.615850e-47 |
| Msa0646210 | Msa0768720 | 0.842137 | 3.106564e-58 | -8.615850e-47 |
| Msa0646210 | Msa0777210 | 0.800034 | 1.741453e-48 | -8.615850e-47 |
| Msa0646210 | Msa0777250 | 0.806429 | 8.261272e-50 | -8.615850e-47 |
| Msa0646210 | Msa0787860 | 0.818524 | 1.873830e-52 | -8.615850e-47 |
| Msa0646210 | Msa0791300 | 0.805214 | 1.487495e-49 | -8.615850e-47 |
| Msa0646210 | Msa0814160 | 0.819234 | 1.292856e-52 | -8.615850e-47 |
| Msa0646210 | Msa0824860 | 0.813320 | 2.717472e-51 | -8.615850e-47 |
| Msa0646210 | Msa0841130 | 0.805696 | 1.178537e-49 | -8.615850e-47 |
| Msa0646210 | Msa0854840 | 0.824356 | 8.439953e-54 | -8.615850e-47 |
| Msa0646210 | Msa0861730 | 0.800379 | 1.481332e-48 | -8.615850e-47 |
| Msa0646210 | Msa0863840 | 0.815691 | 8.119237e-52 | -8.615850e-47 |
| Msa0646210 | Msa0864160 | 0.821502 | 3.902690e-53 | -8.615850e-47 |
| Msa0646210 | Msa0868820 | 0.839790 | 1.283510e-57 | -8.615850e-47 |
| Msa0646210 | Msa0883640 | 0.842215 | 2.962898e-58 | -8.615850e-47 |
| Msa0646210 | Msa0902340 | 0.851787 | 7.066664e-61 | -8.615850e-47 |
| Msa0646210 | Msa0910830 | 0.858463 | 8.099701e-63 | -8.615850e-47 |
| Msa0646210 | Msa0932890 | 0.835848 | 1.321130e-56 | -8.615850e-47 |
| Msa0646210 | Msa0932930 | 0.815074 | 1.113460e-51 | -8.615850e-47 |
| Msa0646210 | Msa0933580 | 0.816128 | 6.488547e-52 | -8.615850e-47 |
| Msa0646210 | Msa0933590 | 0.851992 | 6.183277e-61 | -8.615850e-47 |
| Msa0646210 | Msa0933610 | 0.817029 | 4.076321e-52 | -8.615850e-47 |
| Msa0646210 | Msa0941120 | 0.800142 | 1.655583e-48 | -8.615850e-47 |
| Msa0646210 | Msa0960090 | 0.844538 | 7.106427e-59 | -8.615850e-47 |
| Msa0646210 | Msa0967820 | 0.823799 | 1.140146e-53 | -8.615850e-47 |
| Msa0646210 | Msa0985700 | 0.842116 | 3.146608e-58 | -8.615850e-47 |
| Msa0646210 | Msa0993450 | 0.809061 | 2.279711e-50 | -8.615850e-47 |
| Msa0646210 | Msa1003110 | 0.817177 | 3.775242e-52 | -8.615850e-47 |
| Msa0646210 | Msa1006030 | 0.800420 | 1.453324e-48 | -8.615850e-47 |
| Msa0646210 | Msa1006170 | 0.825288 | 5.086194e-54 | -8.615850e-47 |
| Msa0646210 | Msa1020540 | 0.834441 | 2.992743e-56 | -8.615850e-47 |
| Msa0646210 | Msa1021620 | 0.813856 | 2.071335e-51 | -8.615850e-47 |
| Msa0646210 | Msa1024350 | 0.835715 | 1.427802e-56 | -8.615850e-47 |
| Msa0646210 | Msa1026050 | 0.851865 | 6.718724e-61 | -8.615850e-47 |
| Msa0646210 | Msa1061670 | 0.836471 | 9.176838e-57 | -8.615850e-47 |
| Msa0646210 | Msa1064940 | 0.802276 | 6.059357e-49 | -8.615850e-47 |
| Msa0646210 | Msa1076830 | 0.829974 | 3.812595e-55 | -8.615850e-47 |
| Msa0646210 | Msa1081610 | 0.813147 | 2.964707e-51 | -8.615850e-47 |
| Msa0646210 | Msa1087370 | 0.806240 | 9.056842e-50 | -8.615850e-47 |
| Msa0646210 | Msa1087380 | 0.842899 | 1.950850e-58 | -8.615850e-47 |
| Msa0646210 | Msa1106960 | 0.827801 | 1.280067e-54 | -8.615850e-47 |
| Msa0646210 | Msa1109880 | 0.851619 | 7.887326e-61 | -8.615850e-47 |
| Msa0646210 | Msa1109890 | 0.851639 | 7.787420e-61 | -8.615850e-47 |
| Msa0646210 | Msa1133860 | 0.814767 | 1.302792e-51 | -8.615850e-47 |
| Msa0646210 | Msa1149020 | 0.809852 | 1.541316e-50 | -8.615850e-47 |
| Msa0646210 | Msa1166530 | 0.807147 | 5.825631e-50 | -8.615850e-47 |
| Msa0646210 | Msa1199110 | 0.800752 | 1.243477e-48 | -8.615850e-47 |
| Msa0646210 | Msa1214960 | 0.831365 | 1.739443e-55 | -8.615850e-47 |
| Msa0646210 | Msa1216600 | 0.804444 | 2.154330e-49 | -8.615850e-47 |
| Msa0646210 | Msa1242060 | 0.805071 | 1.593323e-49 | -8.615850e-47 |
| Msa0646210 | Msa1286420 | 0.821006 | 5.077434e-53 | -8.615850e-47 |
| Msa0646210 | Msa1296870 | 0.813792 | 2.139385e-51 | -8.615850e-47 |
| Msa0646210 | Msa1300610 | 0.825831 | 3.782788e-54 | -8.615850e-47 |
| Msa0646210 | Msa1321450 | 0.802410 | 5.685163e-49 | -8.615850e-47 |
| Msa0646210 | Msa1323030 | 0.853609 | 2.133516e-61 | -8.615850e-47 |
| Msa0646210 | Msa1329740 | 0.817560 | 3.096080e-52 | -8.615850e-47 |
| Msa0646210 | Msa1357490 | 0.804447 | 2.150657e-49 | -8.615850e-47 |
| Msa0646210 | Msa1357750 | 0.809420 | 1.908831e-50 | -8.615850e-47 |
| Msa0646210 | Msa1357860 | 0.815408 | 9.388247e-52 | -8.615850e-47 |
| Msa0646210 | Msa1373560 | 0.841002 | 6.187454e-58 | -8.615850e-47 |
| Msa0646210 | Msa1376070 | 0.837163 | 6.111848e-57 | -8.615850e-47 |
| Msa0646210 | Msa1377520 | 0.820361 | 7.144141e-53 | -8.615850e-47 |
| Msa0646210 | Msa1378400 | 0.810198 | 1.298871e-50 | -8.615850e-47 |
| Msa0646210 | Msa1407670 | 0.817968 | 2.503759e-52 | -8.615850e-47 |
| Msa0646210 | Msa1420020 | 0.807859 | 4.113402e-50 | -8.615850e-47 |
| Msa0646210 | Msa1421120 | 0.813098 | 3.039878e-51 | -8.615850e-47 |
| Msa0646210 | Msa1440400 | 0.812474 | 4.163426e-51 | -8.615850e-47 |
| Msa0646210 | Msa1445900 | 0.813744 | 2.191898e-51 | -8.615850e-47 |
| Msa0646210 | Msa1449770 | 0.822827 | 1.922923e-53 | -8.615850e-47 |
| Msa0646210 | Msa1456600 | 0.801887 | 7.283336e-49 | -8.615850e-47 |
| Msa0646210 | Msa1459610 | 0.839612 | 1.428216e-57 | -8.615850e-47 |
| Msa0121910 | Msa0646210 | 0.802213 | 6.240612e-49 | -8.615850e-47 |
| Msa0123530 | Msa0646210 | 0.803741 | 3.016737e-49 | -8.615850e-47 |
| Msa0129850 | Msa0646210 | 0.801305 | 9.586012e-49 | -8.615850e-47 |
| Msa0139460 | Msa0646210 | 0.817616 | 3.007137e-52 | -8.615850e-47 |
| Msa0140270 | Msa0646210 | 0.802997 | 4.300911e-49 | -8.615850e-47 |
| Msa0143680 | Msa0646210 | 0.842044 | 3.287314e-58 | -8.615850e-47 |
| Msa0143710 | Msa0646210 | 0.859234 | 4.762304e-63 | -8.615850e-47 |
| Msa0143740 | Msa0646210 | 0.846355 | 2.288319e-59 | -8.615850e-47 |
| Msa0143770 | Msa0646210 | 0.853511 | 2.276397e-61 | -8.615850e-47 |
| Msa0147680 | Msa0646210 | 0.810057 | 1.392889e-50 | -8.615850e-47 |
| Msa0150910 | Msa0646210 | 0.824310 | 8.651087e-54 | -8.615850e-47 |
| Msa0155850 | Msa0646210 | 0.821980 | 3.026073e-53 | -8.615850e-47 |
| Msa0168010 | Msa0646210 | 0.809353 | 1.972938e-50 | -8.615850e-47 |
| Msa0177550 | Msa0646210 | 0.804719 | 1.887497e-49 | -8.615850e-47 |
| Msa0190670 | Msa0646210 | 0.819120 | 1.372091e-52 | -8.615850e-47 |
| Msa0207640 | Msa0646210 | 0.817289 | 3.562363e-52 | -8.615850e-47 |
| Msa0210850 | Msa0646210 | 0.805552 | 1.263158e-49 | -8.615850e-47 |
| Msa0212550 | Msa0646210 | 0.815946 | 7.121961e-52 | -8.615850e-47 |
| Msa0216760 | Msa0646210 | 0.806452 | 8.169657e-50 | -8.615850e-47 |
| Msa0223880 | Msa0646210 | 0.808360 | 3.217935e-50 | -8.615850e-47 |
| Msa0382610 | Msa0646210 | 0.804699 | 1.905984e-49 | -8.615850e-47 |
| Msa0480400 | Msa0646210 | 0.825894 | 3.653603e-54 | -8.615850e-47 |
| Msa0259110 | Msa0646210 | 0.815063 | 1.120078e-51 | -8.615850e-47 |
| Msa0259300 | Msa0646210 | 0.809594 | 1.751494e-50 | -8.615850e-47 |
| Msa0265060 | Msa0646210 | 0.805765 | 1.139855e-49 | -8.615850e-47 |
| Msa0272210 | Msa0646210 | 0.815978 | 7.007929e-52 | -8.615850e-47 |
| Msa0274250 | Msa0646210 | 0.816010 | 6.892027e-52 | -8.615850e-47 |
| Msa0274260 | Msa0646210 | 0.821838 | 3.263333e-53 | -8.615850e-47 |
| Msa0278950 | Msa0646210 | 0.802894 | 4.517539e-49 | -8.615850e-47 |
| Msa0287720 | Msa0646210 | 0.806338 | 8.633294e-50 | -8.615850e-47 |
| Msa0295980 | Msa0646210 | 0.801221 | 9.974215e-49 | -8.615850e-47 |
| Msa0298270 | Msa0646210 | 0.812797 | 3.538251e-51 | -8.615850e-47 |
| Msa0340650 | Msa0646210 | 0.805249 | 1.462100e-49 | -8.615850e-47 |
| Msa0342130 | Msa0646210 | 0.820150 | 7.983359e-53 | -8.615850e-47 |
| Msa0342160 | Msa0646210 | 0.802681 | 4.998358e-49 | -8.615850e-47 |
| Msa0343720 | Msa0646210 | 0.844609 | 6.798025e-59 | -8.615850e-47 |
| Msa0349910 | Msa0646210 | 0.803227 | 3.855307e-49 | -8.615850e-47 |
| Msa0491760 | Msa0646210 | 0.812364 | 4.400610e-51 | -8.615850e-47 |
| Msa0491770 | Msa0646210 | 0.809712 | 1.652039e-50 | -8.615850e-47 |
| Msa0535570 | Msa0646210 | 0.817288 | 3.563432e-52 | -8.615850e-47 |
| Msa0538440 | Msa0646210 | 0.808233 | 3.424258e-50 | -8.615850e-47 |
| Msa0538450 | Msa0646210 | 0.828580 | 8.308531e-55 | -8.615850e-47 |
| Msa0538520 | Msa0646210 | 0.832913 | 7.205027e-56 | -8.615850e-47 |
| Msa0538530 | Msa0646210 | 0.800315 | 1.526885e-48 | -8.615850e-47 |
| Msa0548970 | Msa0646210 | 0.801976 | 6.983691e-49 | -8.615850e-47 |
| Msa0549920 | Msa0646210 | 0.810442 | 1.150274e-50 | -8.615850e-47 |
| Msa0549930 | Msa0646210 | 0.939861 | 6.222809e-100 | -8.615850e-47 |
| Msa0554660 | Msa0646210 | 0.804203 | 2.417995e-49 | -8.615850e-47 |
| Msa0584970 | Msa0646210 | 0.820529 | 6.536177e-53 | -8.615850e-47 |
| Msa0589740 | Msa0646210 | 0.801982 | 6.964740e-49 | -8.615850e-47 |
| Msa0591490 | Msa0646210 | 0.807763 | 4.311642e-50 | -8.615850e-47 |
| Msa0594320 | Msa0646210 | 0.808611 | 2.844866e-50 | -8.615850e-47 |
| Msa0594330 | Msa0646210 | 0.811841 | 5.721042e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646210 | MtrunA17_Chr4g0034631 | 95.824 | 431 | 18 | 0 | 1 | 431 | 1 | 431 | 0.0 | 852 |
| Msa0646210 | MtrunA17_Chr4g0034641 | 87.529 | 433 | 52 | 1 | 1 | 431 | 1 | 433 | 0.0 | 775 |
| Msa0646210 | MtrunA17_Chr4g0034621 | 85.550 | 436 | 56 | 1 | 1 | 429 | 1 | 436 | 0.0 | 745 |
| Msa0646210 | MtrunA17_Chr4g0034651 | 84.932 | 438 | 50 | 2 | 1 | 431 | 34 | 462 | 0.0 | 738 |
| Msa0646210 | MtrunA17_Chr4g0034611 | 81.422 | 436 | 73 | 2 | 1 | 429 | 1 | 435 | 0.0 | 733 |
| Msa0646210 | MtrunA17_Chr4g0034661 | 81.944 | 432 | 65 | 2 | 1 | 430 | 1 | 421 | 0.0 | 689 |
| Msa0646210 | MtrunA17_Chr1g0154701 | 65.116 | 430 | 136 | 3 | 7 | 429 | 5 | 427 | 0.0 | 570 |
| Msa0646210 | MtrunA17_Chr8g0367951 | 27.692 | 195 | 118 | 7 | 159 | 348 | 391 | 567 | 2.77e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646210 | AT1G19360.1 | 65.947 | 417 | 130 | 5 | 22 | 429 | 14 | 427 | 0.0 | 558 |
| Msa0646210 | AT1G19360.2 | 65.947 | 417 | 130 | 5 | 22 | 429 | 14 | 427 | 0.0 | 558 |
| Msa0646210 | AT1G75110.1 | 64.578 | 415 | 139 | 2 | 22 | 429 | 14 | 427 | 0.0 | 553 |
| Msa0646210 | AT1G75120.1 | 63.300 | 406 | 130 | 3 | 24 | 429 | 16 | 402 | 0.0 | 520 |
| Msa0646210 | AT1G70630.5 | 28.910 | 211 | 118 | 6 | 148 | 348 | 230 | 418 | 1.98e-15 | 78.6 |
| Msa0646210 | AT1G70630.2 | 28.910 | 211 | 118 | 6 | 148 | 348 | 261 | 449 | 2.58e-15 | 78.6 |
| Msa0646210 | AT1G70630.1 | 28.910 | 211 | 118 | 6 | 148 | 348 | 261 | 449 | 2.58e-15 | 78.6 |
| Msa0646210 | AT1G70630.4 | 28.910 | 211 | 118 | 6 | 148 | 348 | 446 | 634 | 3.66e-15 | 78.2 |
| Msa0646210 | AT1G70630.7 | 28.910 | 211 | 118 | 6 | 148 | 348 | 398 | 586 | 3.66e-15 | 78.2 |
| Msa0646210 | AT1G70630.6 | 28.910 | 211 | 118 | 6 | 148 | 348 | 467 | 655 | 4.18e-15 | 78.2 |
| Msa0646210 | AT1G70630.3 | 28.910 | 211 | 118 | 6 | 148 | 348 | 477 | 665 | 4.41e-15 | 78.2 |
Find 92 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGGTCTCTTTGGTAAAA+TGG | 0.121490 | 4_3:-51841520 | None:intergenic |
| CATTCCTTCAATTGAGCTTT+TGG | 0.209327 | 4_3:+51841855 | Msa0646210:CDS |
| CTTGATATGAGTAGAAAATT+AGG | 0.240715 | 4_3:-51836302 | None:intergenic |
| AAGGCAACAACTAGATAATT+AGG | 0.282391 | 4_3:-51841457 | None:intergenic |
| CATAATAACATGACAGCTTA+TGG | 0.285401 | 4_3:+51841730 | Msa0646210:CDS |
| GTTGTTGAATATTATGTTAA+TGG | 0.296088 | 4_3:+51842126 | Msa0646210:CDS |
| GTAATCATTGGAGTTCTTAC+TGG | 0.301834 | 4_3:+51836338 | Msa0646210:CDS |
| CCAAACGGTGCGGCTGTCTC+CGG | 0.317342 | 4_3:+51841571 | Msa0646210:CDS |
| TATCATTATCCGGGTCTCTT+TGG | 0.318671 | 4_3:-51841528 | None:intergenic |
| TAAGAATCCTGTACAATGAT+TGG | 0.344740 | 4_3:+51836242 | None:intergenic |
| TCATGCTGCTAAAAGAACTA+TGG | 0.353213 | 4_3:+51841975 | Msa0646210:CDS |
| TCTAATAAATTTGCCAATCT+CGG | 0.356388 | 4_3:-51841334 | None:intergenic |
| TTGTTGAATATTATGTTAAT+GGG | 0.359540 | 4_3:+51842127 | Msa0646210:CDS |
| CATGTTAAAATCAGAATTAG+TGG | 0.362941 | 4_3:+51841135 | Msa0646210:CDS |
| TATACCAACTCTCTTGATAT+TGG | 0.365508 | 4_3:-51841434 | None:intergenic |
| GTTGCTTGCATTAAGTAAAC+AGG | 0.375504 | 4_3:+51841237 | Msa0646210:CDS |
| AATTCATCAGGAGCAACAAT+AGG | 0.376468 | 4_3:-51841304 | None:intergenic |
| TGAGAAACAAAGAAGTCATT+AGG | 0.384447 | 4_3:-51836383 | None:intergenic |
| TTGATATGAGTAGAAAATTA+GGG | 0.387021 | 4_3:-51836301 | None:intergenic |
| TAATTCACGTGAATAATTAC+CGG | 0.389710 | 4_3:-51842072 | None:intergenic |
| CCGGGTCTCTTTGGTAAAAT+GGG | 0.403345 | 4_3:-51841519 | None:intergenic |
| ACAGTATCAATATCATTATC+CGG | 0.404384 | 4_3:-51841538 | None:intergenic |
| AGAATTAGTGGCACTCTTAT+CGG | 0.411192 | 4_3:+51841147 | Msa0646210:CDS |
| CTAATAAATTTGCCAATCTC+GGG | 0.411225 | 4_3:-51841333 | None:intergenic |
| TGGGTCTTGGGTACAGCAAC+AGG | 0.416936 | 4_3:-51836431 | None:intergenic |
| CCGGAGACAGCCGCACCGTT+TGG | 0.418325 | 4_3:-51841571 | None:intergenic |
| TGAATTCTTGAACCCGAGAT+TGG | 0.422149 | 4_3:+51841321 | Msa0646210:CDS |
| TGATCATCTATACCGAGATT+CGG | 0.432948 | 4_3:+51841684 | Msa0646210:CDS |
| ATCGTTACCGCTGTAATCAT+TGG | 0.439320 | 4_3:+51836326 | Msa0646210:CDS |
| CAAACGGTGCGGCTGTCTCC+GGG | 0.441277 | 4_3:+51841572 | Msa0646210:CDS |
| ATTAGGGTTGTTCTTCATCA+AGG | 0.448286 | 4_3:-51836285 | None:intergenic |
| CGAGGTGTGCCATCGGGAAA+CGG | 0.450059 | 4_3:-51842168 | None:intergenic |
| CTCGGGTTCAAGAATTCATC+AGG | 0.455431 | 4_3:-51841316 | None:intergenic |
| AAGAATCCTGTACAATGATT+GGG | 0.460232 | 4_3:+51836243 | None:intergenic |
| CGAAAGATAACCTGGGTCTT+GGG | 0.463127 | 4_3:-51836443 | None:intergenic |
| AACAGGTAGGTGACGATTTG+AGG | 0.468113 | 4_3:-51836414 | None:intergenic |
| AGCTCAATTGAAGGAATGGT+TGG | 0.470800 | 4_3:-51841850 | None:intergenic |
| ACGAAAGATAACCTGGGTCT+TGG | 0.478063 | 4_3:-51836444 | None:intergenic |
| AAAGAGTTCCTCGTTGAAAA+CGG | 0.480750 | 4_3:-51841923 | None:intergenic |
| TCAACAACTGCTTTCATTCG+CGG | 0.485251 | 4_3:-51842111 | None:intergenic |
| ATTCATCAGGAGCAACAATA+GGG | 0.490622 | 4_3:-51841303 | None:intergenic |
| CCTTCACATTTGAGTTTGCA+AGG | 0.492258 | 4_3:-51841390 | None:intergenic |
| GAAACGGTTTGAGAGCATCT+TGG | 0.499499 | 4_3:-51842152 | None:intergenic |
| GACTTTCGAAGGGGAATGCA+TGG | 0.506305 | 4_3:+51841893 | Msa0646210:CDS |
| TCTCGGTATAGATGATCAAA+AGG | 0.508448 | 4_3:-51841679 | None:intergenic |
| CAAAAGCTCAATTGAAGGAA+TGG | 0.508580 | 4_3:-51841854 | None:intergenic |
| GGTTATCGAGGTGTGCCATC+GGG | 0.509728 | 4_3:-51842174 | None:intergenic |
| GTTATTATGACCATCGCTCA+TGG | 0.514082 | 4_3:-51841716 | None:intergenic |
| TAACCTCAGTAAATTGAAAC+CGG | 0.514324 | 4_3:+51842053 | Msa0646210:CDS |
| CCATCACATCCTGGTTATGA+CGG | 0.520532 | 4_3:+51841949 | Msa0646210:CDS |
| CGGTCCAAAAGCTCAATTGA+AGG | 0.530180 | 4_3:-51841859 | None:intergenic |
| TTAGGGTTGTTCTTCATCAA+GGG | 0.533582 | 4_3:-51836284 | None:intergenic |
| GATAATGATATTGATACTGT+TGG | 0.535960 | 4_3:+51841541 | Msa0646210:CDS |
| ATCAGGAGCAACAATAGGGT+TGG | 0.536486 | 4_3:-51841299 | None:intergenic |
| TGGTTATCGAGGTGTGCCAT+CGG | 0.540059 | 4_3:-51842175 | None:intergenic |
| TGGATTCAACATCCGAATCT+CGG | 0.550825 | 4_3:-51841696 | None:intergenic |
| GCATGAAGCCCGTCATAACC+AGG | 0.559070 | 4_3:-51841958 | None:intergenic |
| TGAAGGAAATGCTCGAGGTA+TGG | 0.559342 | 4_3:+51841407 | Msa0646210:CDS |
| CATCACATCCTGGTTATGAC+GGG | 0.559997 | 4_3:+51841950 | Msa0646210:CDS |
| CAGTATCAATATCATTATCC+GGG | 0.561690 | 4_3:-51841537 | None:intergenic |
| TCAAAGACCATGGGATGGGT+TGG | 0.564496 | 4_3:+51841767 | Msa0646210:CDS |
| TGTGGCAGCACGACTTTCGA+AGG | 0.565368 | 4_3:+51841882 | Msa0646210:CDS |
| GTCTTCAAAGACCATGGGAT+GGG | 0.567731 | 4_3:+51841763 | Msa0646210:CDS |
| CTTCACATTTGAGTTTGCAA+GGG | 0.571821 | 4_3:-51841389 | None:intergenic |
| TCGAAAGTCGTGCTGCCACA+CGG | 0.575082 | 4_3:-51841879 | None:intergenic |
| TAGAATACGAAATTTAAGCC+CGG | 0.575223 | 4_3:-51841590 | None:intergenic |
| GTTCCTCGTTGAAAACGGCT+TGG | 0.577634 | 4_3:-51841918 | None:intergenic |
| AACGATGTCTTCAAAGACCA+TGG | 0.583875 | 4_3:+51841757 | Msa0646210:CDS |
| CCTTGCAAACTCAAATGTGA+AGG | 0.591600 | 4_3:+51841390 | Msa0646210:CDS |
| GTGGCAGCACGACTTTCGAA+GGG | 0.594024 | 4_3:+51841883 | Msa0646210:CDS |
| TTCACCAATATCAAGAGAGT+TGG | 0.596908 | 4_3:+51841430 | Msa0646210:CDS |
| AATGCCTTGACAGTACCAAA+AGG | 0.604979 | 4_3:-51841271 | None:intergenic |
| CCGTCATAACCAGGATGTGA+TGG | 0.606127 | 4_3:-51841949 | None:intergenic |
| TCATTCGCGGAAGCTTATCA+CGG | 0.615337 | 4_3:-51842098 | None:intergenic |
| TGTCTTCAAAGACCATGGGA+TGG | 0.621538 | 4_3:+51841762 | Msa0646210:CDS |
| TAGTAGACCAACCCATCCCA+TGG | 0.627281 | 4_3:-51841774 | None:intergenic |
| GATGTTGAATCCATGAGCGA+TGG | 0.628620 | 4_3:+51841706 | Msa0646210:CDS |
| GCTCTCAAACCGTTTCCCGA+TGG | 0.639969 | 4_3:+51842159 | Msa0646210:CDS |
| CAGGTGAGGGAGTTGACAGA+AGG | 0.641613 | 4_3:+51841193 | Msa0646210:CDS |
| ACATAGAATAATGGTTATCG+AGG | 0.641779 | 4_3:-51842186 | None:intergenic |
| ACGATGTCTTCAAAGACCAT+GGG | 0.646143 | 4_3:+51841758 | Msa0646210:CDS |
| ACTTTCGAAGGGGAATGCAT+GGG | 0.655092 | 4_3:+51841894 | Msa0646210:CDS |
| AAATGTGAAGGAAATGCTCG+AGG | 0.663837 | 4_3:+51841402 | Msa0646210:CDS |
| TTACCGGTTTCAATTTACTG+AGG | 0.667376 | 4_3:-51842056 | None:intergenic |
| GTTGACAGAAGGAAAAGACC+AGG | 0.672608 | 4_3:+51841204 | Msa0646210:CDS |
| TCTTGGGTACAGCAACAGGT+AGG | 0.680252 | 4_3:-51836427 | None:intergenic |
| CTACTAACGTTTATACCACG+AGG | 0.687704 | 4_3:+51841791 | Msa0646210:CDS |
| TGTTGCTGTACCCAAGACCC+AGG | 0.690565 | 4_3:+51836433 | Msa0646210:CDS |
| TGGCAGCACGACTTTCGAAG+GGG | 0.696691 | 4_3:+51841884 | Msa0646210:CDS |
| ATTGAAAACAAATATCCTCG+TGG | 0.698093 | 4_3:-51841806 | None:intergenic |
| AAGAACTCCAATGATTACAG+CGG | 0.709043 | 4_3:-51836333 | None:intergenic |
| TTCGCGGAAGCTTATCACGG+TGG | 0.727930 | 4_3:-51842095 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTTCAAATTAAAAAAAA+GGG | - | chr4_3:51837034-51837053 | None:intergenic | 10.0% |
| !! | TCTATTTCAAATTAAAAAAA+AGG | - | chr4_3:51837035-51837054 | None:intergenic | 10.0% |
| !!! | AAATATAGTTTTTTATTTTG+TGG | - | chr4_3:51837223-51837242 | None:intergenic | 10.0% |
| !! | TATTATATTTACTATATTGT+TGG | - | chr4_3:51837262-51837281 | None:intergenic | 10.0% |
| !! | TAGTTTAAATTCATTAAAAT+AGG | + | chr4_3:51837686-51837705 | Msa0646210:intron | 10.0% |
| !!! | AAAAATTCATAATTAATTTG+TGG | - | chr4_3:51837959-51837978 | None:intergenic | 10.0% |
| !!! | ACAAAATATAATTTTATACA+AGG | - | chr4_3:51839153-51839172 | None:intergenic | 10.0% |
| !! | ATTTAAATCTTTATTGAAAT+AGG | + | chr4_3:51839315-51839334 | Msa0646210:intron | 10.0% |
| !!! | TGATTTTATATTTTTGAAAT+AGG | + | chr4_3:51839407-51839426 | Msa0646210:intron | 10.0% |
| !! | AGAACATATTTAATTATTAA+GGG | - | chr4_3:51839736-51839755 | None:intergenic | 10.0% |
| !! | TAGAACATATTTAATTATTA+AGG | - | chr4_3:51839737-51839756 | None:intergenic | 10.0% |
| !!! | ATGAATTATTTTTTCTTAAA+TGG | - | chr4_3:51839818-51839837 | None:intergenic | 10.0% |
| !!! | TTGTTTCATATTTTATAATA+GGG | + | chr4_3:51839980-51839999 | Msa0646210:intron | 10.0% |
| !! | TTTGAAAAAAAATTGTATTA+CGG | - | chr4_3:51840088-51840107 | None:intergenic | 10.0% |
| !! | AAAAAGATGTATAATAAATA+GGG | + | chr4_3:51840741-51840760 | Msa0646210:intron | 10.0% |
| !!! | ACTTTAGTTTAGTATAAAAT+AGG | + | chr4_3:51837619-51837638 | Msa0646210:intron | 15.0% |
| !!! | ATATATTATTTCTATTGTAG+CGG | - | chr4_3:51837719-51837738 | None:intergenic | 15.0% |
| !! | TAGAAATAATATATGATCAT+AGG | + | chr4_3:51837725-51837744 | Msa0646210:intron | 15.0% |
| !! | AGAAATAATATATGATCATA+GGG | + | chr4_3:51837726-51837745 | Msa0646210:intron | 15.0% |
| !!! | TTTTTTAGTTTTGAAATGAT+AGG | + | chr4_3:51838251-51838270 | Msa0646210:intron | 15.0% |
| !! | TCTAAGAAATTCATAATTAT+GGG | + | chr4_3:51838292-51838311 | Msa0646210:intron | 15.0% |
| !!! | TTATTTCATGATTTTTTTTC+AGG | - | chr4_3:51838610-51838629 | None:intergenic | 15.0% |
| !!! | TGTATATTTTAACATAAAAG+AGG | - | chr4_3:51839675-51839694 | None:intergenic | 15.0% |
| !!! | AATTATTTTTTCTTAAATGG+TGG | - | chr4_3:51839815-51839834 | None:intergenic | 15.0% |
| !! | TTACTAAAGACAATAAAATA+GGG | - | chr4_3:51839931-51839950 | None:intergenic | 15.0% |
| !! | ATTACTAAAGACAATAAAAT+AGG | - | chr4_3:51839932-51839951 | None:intergenic | 15.0% |
| !!! | GTTGTTTCATATTTTATAAT+AGG | + | chr4_3:51839979-51839998 | Msa0646210:intron | 15.0% |
| !! | TTGAAAAAAAATTGTATTAC+GGG | - | chr4_3:51840087-51840106 | None:intergenic | 15.0% |
| !!! | TATAATATGTTTTGAATAAG+AGG | + | chr4_3:51840247-51840266 | Msa0646210:intron | 15.0% |
| !!! | ATAATATGTTTTGAATAAGA+GGG | + | chr4_3:51840248-51840267 | Msa0646210:intron | 15.0% |
| !!! | ATTGTATATTTTAACATAAG+AGG | + | chr4_3:51840277-51840296 | Msa0646210:intron | 15.0% |
| !!! | TTGTATATTTTAACATAAGA+GGG | + | chr4_3:51840278-51840297 | Msa0646210:intron | 15.0% |
| !! | GTTTAAATAAATGGTATAAA+TGG | - | chr4_3:51840419-51840438 | None:intergenic | 15.0% |
| !! | TGATATATTAGTTAAAACAA+AGG | + | chr4_3:51840462-51840481 | Msa0646210:intron | 15.0% |
| !! | GATATATTAGTTAAAACAAA+GGG | + | chr4_3:51840463-51840482 | Msa0646210:intron | 15.0% |
| !! | TTGGAAAATAAATTCTAATA+AGG | + | chr4_3:51840499-51840518 | Msa0646210:intron | 15.0% |
| !! | GAAAAAGATGTATAATAAAT+AGG | + | chr4_3:51840740-51840759 | Msa0646210:intron | 15.0% |
| !! | AAAAGATGTATAATAAATAG+GGG | + | chr4_3:51840742-51840761 | Msa0646210:intron | 15.0% |
| !!! | GATTTTTTATTTTATTCTCT+TGG | + | chr4_3:51841071-51841090 | Msa0646210:intron | 15.0% |
| !! | TTGTTGAATATTATGTTAAT+GGG | + | chr4_3:51842127-51842146 | Msa0646210:CDS | 15.0% |
| !! | TTGATATGAGTAGAAAATTA+GGG | - | chr4_3:51836304-51836323 | None:intergenic | 20.0% |
| !! | TTCAAGCACATTTAATTAAT+TGG | + | chr4_3:51836669-51836688 | Msa0646210:intron | 20.0% |
| !! | ATAATAATATATGCAAAGTC+CGG | + | chr4_3:51837180-51837199 | Msa0646210:intron | 20.0% |
| !!! | TATAGTTTTTTATTTTGTGG+TGG | - | chr4_3:51837220-51837239 | None:intergenic | 20.0% |
| !!! | AACTTGTTTAAGGATATAAT+TGG | + | chr4_3:51837334-51837353 | Msa0646210:intron | 20.0% |
| !!! | ACTCTTACTTTAGTTTTTTT+TGG | + | chr4_3:51837584-51837603 | Msa0646210:intron | 20.0% |
| !! | AGTTTAAATTTCCATTATAG+TGG | - | chr4_3:51837652-51837671 | None:intergenic | 20.0% |
| !! | TAATTACTTGTCAAACAAAA+AGG | + | chr4_3:51837750-51837769 | Msa0646210:intron | 20.0% |
| !! | AATTACTTGTCAAACAAAAA+GGG | + | chr4_3:51837751-51837770 | Msa0646210:intron | 20.0% |
| !! | ATAAAAAATTTCAGTCTCTA+GGG | - | chr4_3:51837921-51837940 | None:intergenic | 20.0% |
| !! | AAACTCAAAAAACAAAACAA+CGG | + | chr4_3:51837989-51838008 | Msa0646210:intron | 20.0% |
| !! | GTCTAAGAAATTCATAATTA+TGG | + | chr4_3:51838291-51838310 | Msa0646210:intron | 20.0% |
| !!! | AAAATTAGATTTTTTCGACT+GGG | - | chr4_3:51838555-51838574 | None:intergenic | 20.0% |
| !!! | AAAAATTAGATTTTTTCGAC+TGG | - | chr4_3:51838556-51838575 | None:intergenic | 20.0% |
| !! | AAGAAGAATATCAAATTACA+AGG | + | chr4_3:51838683-51838702 | Msa0646210:intron | 20.0% |
| !!! | TCAAACATAGTATATTTTAC+AGG | + | chr4_3:51838742-51838761 | Msa0646210:intron | 20.0% |
| !!! | CAAACATAGTATATTTTACA+GGG | + | chr4_3:51838743-51838762 | Msa0646210:intron | 20.0% |
| !!! | TTAACATGATTAGATCTTTT+CGG | - | chr4_3:51838819-51838838 | None:intergenic | 20.0% |
| !!! | ACAAAAAGATATATCAGTTT+TGG | - | chr4_3:51838845-51838864 | None:intergenic | 20.0% |
| !! | GTAAAAAGTAATTAAGTCTA+GGG | - | chr4_3:51839206-51839225 | None:intergenic | 20.0% |
| !! | ATACTAGTAGTATATAGTAA+AGG | + | chr4_3:51839247-51839266 | Msa0646210:intron | 20.0% |
| !! | TACTAGTAGTATATAGTAAA+GGG | + | chr4_3:51839248-51839267 | Msa0646210:intron | 20.0% |
| !!! | TATTTTAACATAAAAGAGGA+GGG | - | chr4_3:51839671-51839690 | None:intergenic | 20.0% |
| !!! | ATATTTTAACATAAAAGAGG+AGG | - | chr4_3:51839672-51839691 | None:intergenic | 20.0% |
| !! | ATATTTAATTATTAAGGGAG+GGG | - | chr4_3:51839731-51839750 | None:intergenic | 20.0% |
| !! | CATATTTAATTATTAAGGGA+GGG | - | chr4_3:51839732-51839751 | None:intergenic | 20.0% |
| !! | ACATATTTAATTATTAAGGG+AGG | - | chr4_3:51839733-51839752 | None:intergenic | 20.0% |
| !!! | TAATATGTTTTGAATAAGAG+GGG | + | chr4_3:51840249-51840268 | Msa0646210:intron | 20.0% |
| !!! | TGTATATTTTAACATAAGAG+GGG | + | chr4_3:51840279-51840298 | Msa0646210:intron | 20.0% |
| !!! | AAAGGGAATGATATTTTAAT+TGG | + | chr4_3:51840480-51840499 | Msa0646210:intron | 20.0% |
| !! | ATGTAGTTAGAAATATCAAA+TGG | + | chr4_3:51840787-51840806 | Msa0646210:intron | 20.0% |
| !! | TGTAGTTAGAAATATCAAAT+GGG | + | chr4_3:51840788-51840807 | Msa0646210:intron | 20.0% |
| !! | GACAAAAAAAATTCTCAAAA+GGG | + | chr4_3:51840824-51840843 | Msa0646210:intron | 20.0% |
| !! | GTTGTTGAATATTATGTTAA+TGG | + | chr4_3:51842126-51842145 | Msa0646210:CDS | 20.0% |
| ! | CTTGATATGAGTAGAAAATT+AGG | - | chr4_3:51836305-51836324 | None:intergenic | 25.0% |
| !! | CTAATTTTCTACTCATATCA+AGG | + | chr4_3:51836303-51836322 | Msa0646210:CDS | 25.0% |
| ! | AAACCTATTGTTCGTAATTT+AGG | - | chr4_3:51836827-51836846 | None:intergenic | 25.0% |
| ! | TAATAATATATGCAAAGTCC+GGG | + | chr4_3:51837181-51837200 | Msa0646210:intron | 25.0% |
| ! | CTAACAAATAGCATTCTTAT+AGG | + | chr4_3:51837307-51837326 | Msa0646210:intron | 25.0% |
| !! | TATAGGCAAAAACTTGTTTA+AGG | + | chr4_3:51837324-51837343 | Msa0646210:intron | 25.0% |
| !! | CCATGACTTCATAATATTTT+TGG | - | chr4_3:51837541-51837560 | None:intergenic | 25.0% |
| ! | CCAAAAATATTATGAAGTCA+TGG | + | chr4_3:51837538-51837557 | Msa0646210:intron | 25.0% |
| !! | CAAATTTTGCGTATATTACA+GGG | - | chr4_3:51837794-51837813 | None:intergenic | 25.0% |
| !! | TCAAATTTTGCGTATATTAC+AGG | - | chr4_3:51837795-51837814 | None:intergenic | 25.0% |
| ! | CATAAAAAATTTCAGTCTCT+AGG | - | chr4_3:51837922-51837941 | None:intergenic | 25.0% |
| ! | GAGCTCAAAATTAGATTTAT+AGG | - | chr4_3:51838024-51838043 | None:intergenic | 25.0% |
| !! | AATTTCAATTTTGCACGTTT+TGG | - | chr4_3:51838140-51838159 | None:intergenic | 25.0% |
| !! | ATTTCATTCCCTAATTTTGT+AGG | + | chr4_3:51838192-51838211 | Msa0646210:intron | 25.0% |
| ! | ACTAAAAAACTTCATTGTGA+TGG | - | chr4_3:51838240-51838259 | None:intergenic | 25.0% |
| !!! | AAATTAGATTTTTTCGACTG+GGG | - | chr4_3:51838554-51838573 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTCAGGCATGTTT+AGG | - | chr4_3:51838600-51838619 | None:intergenic | 25.0% |
| !! | TATATTTTACAGGGTCAATT+TGG | + | chr4_3:51838752-51838771 | Msa0646210:intron | 25.0% |
| ! | GGTAAAAAGTAATTAAGTCT+AGG | - | chr4_3:51839207-51839226 | None:intergenic | 25.0% |
| ! | ACTAGTAGTATATAGTAAAG+GGG | + | chr4_3:51839249-51839268 | Msa0646210:intron | 25.0% |
| ! | GCAATAAAAAAGCAGATAAA+TGG | + | chr4_3:51839549-51839568 | Msa0646210:intron | 25.0% |
| !!! | ATTTTAACATAAAAGAGGAG+GGG | - | chr4_3:51839670-51839689 | None:intergenic | 25.0% |
| ! | GTAATTCAAGCATCTTATAA+GGG | - | chr4_3:51839705-51839724 | None:intergenic | 25.0% |
| ! | TGTAATTCAAGCATCTTATA+AGG | - | chr4_3:51839706-51839725 | None:intergenic | 25.0% |
| ! | TATTTAATTATTAAGGGAGG+GGG | - | chr4_3:51839730-51839749 | None:intergenic | 25.0% |
| !!! | AGTGTAGATTTTAACATAAG+AGG | + | chr4_3:51840174-51840193 | Msa0646210:intron | 25.0% |
| !!! | GTGTAGATTTTAACATAAGA+GGG | + | chr4_3:51840175-51840194 | Msa0646210:intron | 25.0% |
| !!! | TGTAGATTTTAACATAAGAG+GGG | + | chr4_3:51840176-51840195 | Msa0646210:intron | 25.0% |
| !!! | TTTTAGAGTGCAACATATAA+AGG | + | chr4_3:51840363-51840382 | Msa0646210:intron | 25.0% |
| !! | TTTAGAGTGCAACATATAAA+GGG | + | chr4_3:51840364-51840383 | Msa0646210:intron | 25.0% |
| !!! | TTCCTGTGATTTTAACAAAA+GGG | - | chr4_3:51840602-51840621 | None:intergenic | 25.0% |
| !!! | ATTCCTGTGATTTTAACAAA+AGG | - | chr4_3:51840603-51840622 | None:intergenic | 25.0% |
| !! | ATCAAATGGGTCTTATAAAA+AGG | + | chr4_3:51840801-51840820 | Msa0646210:intron | 25.0% |
| !! | TCAAATGGGTCTTATAAAAA+GGG | + | chr4_3:51840802-51840821 | Msa0646210:intron | 25.0% |
| ! | GGACAAAAAAAATTCTCAAA+AGG | + | chr4_3:51840823-51840842 | Msa0646210:intron | 25.0% |
| !!! | ATCTTGATAATGATGAAGAA+AGG | - | chr4_3:51840879-51840898 | None:intergenic | 25.0% |
| ! | AATCAAAATAAGAGTCGTAA+TGG | + | chr4_3:51840920-51840939 | Msa0646210:intron | 25.0% |
| !!! | TTTTATTTTATTCTCTTGGC+AGG | + | chr4_3:51841075-51841094 | Msa0646210:intron | 25.0% |
| ! | CATGTTAAAATCAGAATTAG+TGG | + | chr4_3:51841135-51841154 | Msa0646210:CDS | 25.0% |
| ! | TCTAATAAATTTGCCAATCT+CGG | - | chr4_3:51841337-51841356 | None:intergenic | 25.0% |
| ! | ACAGTATCAATATCATTATC+CGG | - | chr4_3:51841541-51841560 | None:intergenic | 25.0% |
| ! | GATAATGATATTGATACTGT+TGG | + | chr4_3:51841541-51841560 | Msa0646210:CDS | 25.0% |
| !!! | AGGATATTTGTTTTCAATTC+TGG | + | chr4_3:51841811-51841830 | Msa0646210:CDS | 25.0% |
| ! | TAATTCACGTGAATAATTAC+CGG | - | chr4_3:51842075-51842094 | None:intergenic | 25.0% |
| TGAGAAACAAAGAAGTCATT+AGG | - | chr4_3:51836386-51836405 | None:intergenic | 30.0% | |
| AAAAACACGAAAGATAACCT+GGG | - | chr4_3:51836453-51836472 | None:intergenic | 30.0% | |
| ! | ACTGTGATAGTGTTTGATTA+TGG | + | chr4_3:51836581-51836600 | Msa0646210:intron | 30.0% |
| ! | ATTATGGCTTTTACTACATG+TGG | + | chr4_3:51836597-51836616 | Msa0646210:intron | 30.0% |
| ! | TTATGGCTTTTACTACATGT+GGG | + | chr4_3:51836598-51836617 | Msa0646210:intron | 30.0% |
| AATAATATATGCAAAGTCCG+GGG | + | chr4_3:51837182-51837201 | Msa0646210:intron | 30.0% | |
| !!! | TTTTTTATTTTGTGGTGGTC+GGG | - | chr4_3:51837215-51837234 | None:intergenic | 30.0% |
| !!! | GTTTTTTATTTTGTGGTGGT+CGG | - | chr4_3:51837216-51837235 | None:intergenic | 30.0% |
| ACGAATCAAGCAATTAAGTT+AGG | + | chr4_3:51837423-51837442 | Msa0646210:intron | 30.0% | |
| CATCAAATGACAAATCCTTT+GGG | + | chr4_3:51837463-51837482 | Msa0646210:intron | 30.0% | |
| TAATTCAAAGTTTGTCCCAA+AGG | - | chr4_3:51837481-51837500 | None:intergenic | 30.0% | |
| TAACCATGCCTACAAAATTA+GGG | - | chr4_3:51838203-51838222 | None:intergenic | 30.0% | |
| !!! | AGAATTTTTCAAGACACAGT+TGG | + | chr4_3:51838373-51838392 | Msa0646210:intron | 30.0% |
| CATGAAATAATTCAACCTCT+AGG | + | chr4_3:51838620-51838639 | Msa0646210:intron | 30.0% | |
| TTGGACTACGTCTATAATAT+AGG | + | chr4_3:51838651-51838670 | Msa0646210:intron | 30.0% | |
| TGGACTACGTCTATAATATA+GGG | + | chr4_3:51838652-51838671 | Msa0646210:intron | 30.0% | |
| GCAGTAGAAAAACAGATAAA+CGG | + | chr4_3:51838877-51838896 | Msa0646210:intron | 30.0% | |
| ! | TCTAAAGGAGACACAATTTT+GGG | + | chr4_3:51838932-51838951 | Msa0646210:intron | 30.0% |
| !!! | TTGTCAAAAGTTTTAGACGA+AGG | - | chr4_3:51838982-51839001 | None:intergenic | 30.0% |
| GGGTAAAATTGACAGAAAAA+TGG | - | chr4_3:51839186-51839205 | None:intergenic | 30.0% | |
| CGCAACAATAAAAACAACAT+TGG | + | chr4_3:51839345-51839364 | Msa0646210:intron | 30.0% | |
| CGCAACAATAAAAACAACAT+TGG | + | chr4_3:51839345-51839364 | Msa0646210:intron | 30.0% | |
| ATTTATAACCGGTTGAAAGA+TGG | - | chr4_3:51839591-51839610 | None:intergenic | 30.0% | |
| TGTAATTCAAGCATCTTTGA+GGG | - | chr4_3:51839645-51839664 | None:intergenic | 30.0% | |
| ATGTAATTCAAGCTTCTCTT+AGG | + | chr4_3:51840205-51840224 | Msa0646210:intron | 30.0% | |
| TGTAATTCAAGCTTCTCTTA+GGG | + | chr4_3:51840206-51840225 | Msa0646210:intron | 30.0% | |
| !!! | ATATTTTAACATAAGAGGGG+AGG | + | chr4_3:51840282-51840301 | Msa0646210:intron | 30.0% |
| !!! | TATTTTAACATAAGAGGGGA+GGG | + | chr4_3:51840283-51840302 | Msa0646210:intron | 30.0% |
| TGTAATTCAAGCATCTTAGA+GGG | + | chr4_3:51840309-51840328 | Msa0646210:intron | 30.0% | |
| !! | GTTGCACTCTAAAATTTGAT+AGG | - | chr4_3:51840357-51840376 | None:intergenic | 30.0% |
| ! | TTACAAGTTGAAGTTAGAGA+TGG | - | chr4_3:51840548-51840567 | None:intergenic | 30.0% |
| ACAAAAGGGTCCTATAATTA+GGG | - | chr4_3:51840588-51840607 | None:intergenic | 30.0% | |
| AACAAAAGGGTCCTATAATT+AGG | - | chr4_3:51840589-51840608 | None:intergenic | 30.0% | |
| AATCACAGGAATTAAGAAAG+TGG | + | chr4_3:51840611-51840630 | Msa0646210:intron | 30.0% | |
| ! | CTCAAAAGGGTCTTATAATT+AGG | + | chr4_3:51840837-51840856 | Msa0646210:intron | 30.0% |
| ! | AAGGGTCTTATAATTAGGTA+CGG | + | chr4_3:51840842-51840861 | Msa0646210:intron | 30.0% |
| CATTATCAAGATTATGTGAG+AGG | + | chr4_3:51840887-51840906 | Msa0646210:intron | 30.0% | |
| ! | CTATAAGAACTCTGATTTTG+GGG | - | chr4_3:51840993-51841012 | None:intergenic | 30.0% |
| ! | CCTATAAGAACTCTGATTTT+GGG | - | chr4_3:51840994-51841013 | None:intergenic | 30.0% |
| ! | TCCTATAAGAACTCTGATTT+TGG | - | chr4_3:51840995-51841014 | None:intergenic | 30.0% |
| GAAACAAAGAAGTCATTGTT+GGG | - | chr4_3:51841046-51841065 | None:intergenic | 30.0% | |
| AGAAACAAAGAAGTCATTGT+TGG | - | chr4_3:51841047-51841066 | None:intergenic | 30.0% | |
| CTAATAAATTTGCCAATCTC+GGG | - | chr4_3:51841336-51841355 | None:intergenic | 30.0% | |
| TATACCAACTCTCTTGATAT+TGG | - | chr4_3:51841437-51841456 | None:intergenic | 30.0% | |
| AAGGCAACAACTAGATAATT+AGG | - | chr4_3:51841460-51841479 | None:intergenic | 30.0% | |
| ! | TTTTGCAATCTCATCATCTA+AGG | - | chr4_3:51841479-51841498 | None:intergenic | 30.0% |
| CAGTATCAATATCATTATCC+GGG | - | chr4_3:51841540-51841559 | None:intergenic | 30.0% | |
| ACTGTTGGAAAAATTCCAAA+CGG | + | chr4_3:51841556-51841575 | Msa0646210:CDS | 30.0% | |
| TAGAATACGAAATTTAAGCC+CGG | - | chr4_3:51841593-51841612 | None:intergenic | 30.0% | |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | + | chr4_3:51841609-51841628 | Msa0646210:CDS | 30.0% |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | + | chr4_3:51841610-51841629 | Msa0646210:CDS | 30.0% |
| CATAATAACATGACAGCTTA+TGG | + | chr4_3:51841730-51841749 | Msa0646210:CDS | 30.0% | |
| ATTGAAAACAAATATCCTCG+TGG | - | chr4_3:51841809-51841828 | None:intergenic | 30.0% | |
| TAACCTCAGTAAATTGAAAC+CGG | + | chr4_3:51842053-51842072 | Msa0646210:CDS | 30.0% | |
| TTAGGGTTGTTCTTCATCAA+GGG | - | chr4_3:51836287-51836306 | None:intergenic | 35.0% | |
| ATTAGGGTTGTTCTTCATCA+AGG | - | chr4_3:51836288-51836307 | None:intergenic | 35.0% | |
| AAGAACTCCAATGATTACAG+CGG | - | chr4_3:51836336-51836355 | None:intergenic | 35.0% | |
| GTAATCATTGGAGTTCTTAC+TGG | + | chr4_3:51836338-51836357 | Msa0646210:CDS | 35.0% | |
| GAAAAACACGAAAGATAACC+TGG | - | chr4_3:51836454-51836473 | None:intergenic | 35.0% | |
| AACAAAAACAGTGAAGTCAG+AGG | - | chr4_3:51836554-51836573 | None:intergenic | 35.0% | |
| ACGCCTAAATTACGAACAAT+AGG | + | chr4_3:51836821-51836840 | Msa0646210:intron | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | + | chr4_3:51836855-51836874 | Msa0646210:intron | 35.0% |
| !!! | TTTTTATTTTGTGGTGGTCG+GGG | - | chr4_3:51837214-51837233 | None:intergenic | 35.0% |
| ! | CCAAAGGATTTGTCATTTGA+TGG | - | chr4_3:51837465-51837484 | None:intergenic | 35.0% |
| CCATCAAATGACAAATCCTT+TGG | + | chr4_3:51837462-51837481 | Msa0646210:intron | 35.0% | |
| TGAATTAGCAGAGTCTCATT+CGG | + | chr4_3:51837494-51837513 | Msa0646210:intron | 35.0% | |
| TAGGAACAACACCACTATAA+TGG | + | chr4_3:51837638-51837657 | Msa0646210:intron | 35.0% | |
| ! | ATTCCCTAATTTTGTAGGCA+TGG | + | chr4_3:51838197-51838216 | Msa0646210:intron | 35.0% |
| CTAACCATGCCTACAAAATT+AGG | - | chr4_3:51838204-51838223 | None:intergenic | 35.0% | |
| GGCAAATAGTGCATTGTAAT+TGG | + | chr4_3:51838460-51838479 | Msa0646210:intron | 35.0% | |
| TTCGACTGGGGATAAATTAA+TGG | - | chr4_3:51838542-51838561 | None:intergenic | 35.0% | |
| TAGAGCTACTATCAGAAAGA+CGG | - | chr4_3:51838916-51838935 | None:intergenic | 35.0% | |
| !! | CTTTCTGATAGTAGCTCTAA+AGG | + | chr4_3:51838917-51838936 | Msa0646210:intron | 35.0% |
| !! | CTCTAAAGGAGACACAATTT+TGG | + | chr4_3:51838931-51838950 | Msa0646210:intron | 35.0% |
| ! | TTTTAGACGAAGGTTAAAGC+CGG | - | chr4_3:51838972-51838991 | None:intergenic | 35.0% |
| TATGAGCTATCCACAACAAT+AGG | + | chr4_3:51839092-51839111 | Msa0646210:intron | 35.0% | |
| CAATCTTGTTCCTATTGTTG+TGG | - | chr4_3:51839105-51839124 | None:intergenic | 35.0% | |
| CACAACAATAGGAACAAGAT+TGG | + | chr4_3:51839103-51839122 | Msa0646210:intron | 35.0% | |
| TCAAGACGTGCACAATAAAA+TGG | - | chr4_3:51839228-51839247 | None:intergenic | 35.0% | |
| ATCAGTTTCCATCTTTCAAC+CGG | + | chr4_3:51839580-51839599 | Msa0646210:intron | 35.0% | |
| GTAATTCAAGCATCTTTGAG+GGG | - | chr4_3:51839644-51839663 | None:intergenic | 35.0% | |
| GTGTAATTCAAGCATCTTTG+AGG | - | chr4_3:51839646-51839665 | None:intergenic | 35.0% | |
| TTCAAGCATCTTATAAGGGA+GGG | - | chr4_3:51839701-51839720 | None:intergenic | 35.0% | |
| ATTCAAGCATCTTATAAGGG+AGG | - | chr4_3:51839702-51839721 | None:intergenic | 35.0% | |
| !! | AGATTTTAACATAAGAGGGG+AGG | + | chr4_3:51840179-51840198 | Msa0646210:intron | 35.0% |
| !! | GATTTTAACATAAGAGGGGA+GGG | + | chr4_3:51840180-51840199 | Msa0646210:intron | 35.0% |
| !! | ATTTTAACATAAGAGGGGAG+GGG | + | chr4_3:51840181-51840200 | Msa0646210:intron | 35.0% |
| GTAATTCAAGCTTCTCTTAG+GGG | + | chr4_3:51840207-51840226 | Msa0646210:intron | 35.0% | |
| !! | TATGTTTTGAATAAGAGGGG+AGG | + | chr4_3:51840252-51840271 | Msa0646210:intron | 35.0% |
| !! | ATGTTTTGAATAAGAGGGGA+GGG | + | chr4_3:51840253-51840272 | Msa0646210:intron | 35.0% |
| !! | ATTTTAACATAAGAGGGGAG+GGG | + | chr4_3:51840181-51840200 | Msa0646210:intron | 35.0% |
| GTGTAATTCAAGCATCTTAG+AGG | + | chr4_3:51840308-51840327 | Msa0646210:intron | 35.0% | |
| GTAATTCAAGCATCTTAGAG+GGG | + | chr4_3:51840310-51840329 | Msa0646210:intron | 35.0% | |
| ! | GACCCTTTTGTTAAAATCAC+AGG | + | chr4_3:51840597-51840616 | Msa0646210:intron | 35.0% |
| AACTAACTCTCTCTCTCTTA+AGG | - | chr4_3:51840686-51840705 | None:intergenic | 35.0% | |
| !!! | GTTATGGGGTTTTGAAGATT+TGG | - | chr4_3:51840971-51840990 | None:intergenic | 35.0% |
| !!! | AACTCTGATTTTGGGGTTAT+GGG | - | chr4_3:51840986-51841005 | None:intergenic | 35.0% |
| CCCAAAATCAGAGTTCTTAT+AGG | + | chr4_3:51840991-51841010 | Msa0646210:intron | 35.0% | |
| AGAATTAGTGGCACTCTTAT+CGG | + | chr4_3:51841147-51841166 | Msa0646210:CDS | 35.0% | |
| AAATGCAGAGCTGAAAAAAC+AGG | + | chr4_3:51841174-51841193 | Msa0646210:CDS | 35.0% | |
| ATTCATCAGGAGCAACAATA+GGG | - | chr4_3:51841306-51841325 | None:intergenic | 35.0% | |
| AATTCATCAGGAGCAACAAT+AGG | - | chr4_3:51841307-51841326 | None:intergenic | 35.0% | |
| ! | CTTCACATTTGAGTTTGCAA+GGG | - | chr4_3:51841392-51841411 | None:intergenic | 35.0% |
| TTCACCAATATCAAGAGAGT+TGG | + | chr4_3:51841430-51841449 | Msa0646210:CDS | 35.0% | |
| TCTCGGTATAGATGATCAAA+AGG | - | chr4_3:51841682-51841701 | None:intergenic | 35.0% | |
| TGATCATCTATACCGAGATT+CGG | + | chr4_3:51841684-51841703 | Msa0646210:CDS | 35.0% | |
| CAAAAGCTCAATTGAAGGAA+TGG | - | chr4_3:51841857-51841876 | None:intergenic | 35.0% | |
| ! | CATTCCTTCAATTGAGCTTT+TGG | + | chr4_3:51841855-51841874 | Msa0646210:CDS | 35.0% |
| AAAGAGTTCCTCGTTGAAAA+CGG | - | chr4_3:51841926-51841945 | None:intergenic | 35.0% | |
| TCATGCTGCTAAAAGAACTA+TGG | + | chr4_3:51841975-51841994 | Msa0646210:CDS | 35.0% | |
| !! | TTACCGGTTTCAATTTACTG+AGG | - | chr4_3:51842059-51842078 | None:intergenic | 35.0% |
| ATTGGGCTCAGAGAAAAAGA+AGG | + | chr4_3:51836260-51836279 | Msa0646210:CDS | 40.0% | |
| ATCGTTACCGCTGTAATCAT+TGG | + | chr4_3:51836326-51836345 | Msa0646210:CDS | 40.0% | |
| TTACTACATGTGGGTCATTG+TGG | + | chr4_3:51836607-51836626 | Msa0646210:intron | 40.0% | |
| !! | GAAATGTTAACTTGTGCCCT+TGG | + | chr4_3:51836854-51836873 | Msa0646210:intron | 40.0% |
| !! | AGCTCCTTAACTTGTGTCTT+AGG | + | chr4_3:51836992-51837011 | Msa0646210:intron | 40.0% |
| !! | GCTCCTTAACTTGTGTCTTA+GGG | + | chr4_3:51836993-51837012 | Msa0646210:intron | 40.0% |
| !!! | CAGTCTCTAGGGTGATTTTT+TGG | - | chr4_3:51837910-51837929 | None:intergenic | 40.0% |
| CTATTTGCCACAATTCAAGG+AGG | - | chr4_3:51838449-51838468 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr4_3:51838452-51838471 | None:intergenic | 40.0% | |
| ! | GCATGTTTAGGACGTCAAAA+TGG | - | chr4_3:51838588-51838607 | None:intergenic | 40.0% |
| !!! | CAACCTCTAGGTCACTTTTT+TGG | + | chr4_3:51838632-51838651 | Msa0646210:intron | 40.0% |
| AGTCCAAAAAAGTGACCTAG+AGG | - | chr4_3:51838638-51838657 | None:intergenic | 40.0% | |
| !!! | TTGGGCTGAATTTTTTGTCC+CGG | + | chr4_3:51838950-51838969 | Msa0646210:intron | 40.0% |
| TTTAGACGAAGGTTAAAGCC+GGG | - | chr4_3:51838971-51838990 | None:intergenic | 40.0% | |
| TCAAGCATCTTATAAGGGAG+GGG | - | chr4_3:51839700-51839719 | None:intergenic | 40.0% | |
| !! | TGTTTTGAATAAGAGGGGAG+GGG | + | chr4_3:51840254-51840273 | Msa0646210:intron | 40.0% |
| AAGGGTCCTATAATTAGGGA+CGG | - | chr4_3:51840584-51840603 | None:intergenic | 40.0% | |
| ! | GGTCTTATAATTAGGTACGG+AGG | + | chr4_3:51840845-51840864 | Msa0646210:intron | 40.0% |
| !!! | ACTCTGATTTTGGGGTTATG+GGG | - | chr4_3:51840985-51841004 | None:intergenic | 40.0% |
| !!! | GAACTCTGATTTTGGGGTTA+TGG | - | chr4_3:51840987-51841006 | None:intergenic | 40.0% |
| AGAGCTGAAAAAACAGGTGA+GGG | + | chr4_3:51841180-51841199 | Msa0646210:CDS | 40.0% | |
| !!! | CAAGCAACTTTTTTTCAGCC+TGG | - | chr4_3:51841225-51841244 | None:intergenic | 40.0% |
| AATGCCTTGACAGTACCAAA+AGG | - | chr4_3:51841274-51841293 | None:intergenic | 40.0% | |
| TGAATTCTTGAACCCGAGAT+TGG | + | chr4_3:51841321-51841340 | Msa0646210:CDS | 40.0% | |
| ! | CCTTCACATTTGAGTTTGCA+AGG | - | chr4_3:51841393-51841412 | None:intergenic | 40.0% |
| CCTTGCAAACTCAAATGTGA+AGG | + | chr4_3:51841390-51841409 | Msa0646210:CDS | 40.0% | |
| AAATGTGAAGGAAATGCTCG+AGG | + | chr4_3:51841402-51841421 | Msa0646210:CDS | 40.0% | |
| TATCATTATCCGGGTCTCTT+TGG | - | chr4_3:51841531-51841550 | None:intergenic | 40.0% | |
| TGGAAAAATTCCAAACGGTG+CGG | + | chr4_3:51841561-51841580 | Msa0646210:CDS | 40.0% | |
| TGGATTCAACATCCGAATCT+CGG | - | chr4_3:51841699-51841718 | None:intergenic | 40.0% | |
| GTTATTATGACCATCGCTCA+TGG | - | chr4_3:51841719-51841738 | None:intergenic | 40.0% | |
| AACGATGTCTTCAAAGACCA+TGG | + | chr4_3:51841757-51841776 | Msa0646210:CDS | 40.0% | |
| ACGATGTCTTCAAAGACCAT+GGG | + | chr4_3:51841758-51841777 | Msa0646210:CDS | 40.0% | |
| CTACTAACGTTTATACCACG+AGG | + | chr4_3:51841791-51841810 | Msa0646210:CDS | 40.0% | |
| AGCTCAATTGAAGGAATGGT+TGG | - | chr4_3:51841853-51841872 | None:intergenic | 40.0% | |
| ! | CTCTTTTATCCATCACATCC+TGG | + | chr4_3:51841940-51841959 | Msa0646210:CDS | 40.0% |
| ! | TGAACAGCAGAGTTCTTTTC+AGG | + | chr4_3:51842013-51842032 | Msa0646210:CDS | 40.0% |
| TCAACAACTGCTTTCATTCG+CGG | - | chr4_3:51842114-51842133 | None:intergenic | 40.0% | |
| AACAGGTAGGTGACGATTTG+AGG | - | chr4_3:51836417-51836436 | None:intergenic | 45.0% | |
| CGAAAGATAACCTGGGTCTT+GGG | - | chr4_3:51836446-51836465 | None:intergenic | 45.0% | |
| ACGAAAGATAACCTGGGTCT+TGG | - | chr4_3:51836447-51836466 | None:intergenic | 45.0% | |
| ATAAGAGAGTCGTCCAAACG+TGG | + | chr4_3:51836723-51836742 | Msa0646210:intron | 45.0% | |
| AGTCGTCCAAACGTGGAATT+GGG | + | chr4_3:51836730-51836749 | Msa0646210:intron | 45.0% | |
| GATTCACCCAATTCCACGTT+TGG | - | chr4_3:51836739-51836758 | None:intergenic | 45.0% | |
| !! | CCTTCTTAACTTGTGCCCAA+GGG | - | chr4_3:51836873-51836892 | None:intergenic | 45.0% |
| GTGCCCTAAGACACAAGTTA+AGG | - | chr4_3:51836999-51837018 | None:intergenic | 45.0% | |
| CCTGTGAGTATACGCTTAGT+AGG | - | chr4_3:51838168-51838187 | None:intergenic | 45.0% | |
| CCTACTAAGCGTATACTCAC+AGG | + | chr4_3:51838165-51838184 | Msa0646210:intron | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr4_3:51838432-51838451 | None:intergenic | 45.0% |
| ! | ATTCAAGCATCTTTGAGGGG+AGG | - | chr4_3:51839641-51839660 | None:intergenic | 45.0% |
| ATTCAAGCTTCTCTTAGGGG+AGG | + | chr4_3:51840210-51840229 | Msa0646210:intron | 45.0% | |
| TTCAAGCTTCTCTTAGGGGA+GGG | + | chr4_3:51840211-51840230 | Msa0646210:intron | 45.0% | |
| ATTCAAGCATCTTAGAGGGG+AGG | + | chr4_3:51840313-51840332 | Msa0646210:intron | 45.0% | |
| TTCAAGCATCTTAGAGGGGA+GGG | + | chr4_3:51840314-51840333 | Msa0646210:intron | 45.0% | |
| CTACCTCCGTCCCTAATTAT+AGG | + | chr4_3:51840575-51840594 | Msa0646210:intron | 45.0% | |
| CAGAGCTGAAAAAACAGGTG+AGG | + | chr4_3:51841179-51841198 | Msa0646210:CDS | 45.0% | |
| GTTGACAGAAGGAAAAGACC+AGG | + | chr4_3:51841204-51841223 | Msa0646210:CDS | 45.0% | |
| ! | TGGACCTTTTGGTACTGTCA+AGG | + | chr4_3:51841267-51841286 | Msa0646210:CDS | 45.0% |
| ATCAGGAGCAACAATAGGGT+TGG | - | chr4_3:51841302-51841321 | None:intergenic | 45.0% | |
| CTCGGGTTCAAGAATTCATC+AGG | - | chr4_3:51841319-51841338 | None:intergenic | 45.0% | |
| TGAAGGAAATGCTCGAGGTA+TGG | + | chr4_3:51841407-51841426 | Msa0646210:CDS | 45.0% | |
| CCGGGTCTCTTTGGTAAAAT+GGG | - | chr4_3:51841522-51841541 | None:intergenic | 45.0% | |
| ! | CCCATTTTACCAAAGAGACC+CGG | + | chr4_3:51841519-51841538 | Msa0646210:CDS | 45.0% |
| TCCGGGTCTCTTTGGTAAAA+TGG | - | chr4_3:51841523-51841542 | None:intergenic | 45.0% | |
| GATGTTGAATCCATGAGCGA+TGG | + | chr4_3:51841706-51841725 | Msa0646210:CDS | 45.0% | |
| TGTCTTCAAAGACCATGGGA+TGG | + | chr4_3:51841762-51841781 | Msa0646210:CDS | 45.0% | |
| GTCTTCAAAGACCATGGGAT+GGG | + | chr4_3:51841763-51841782 | Msa0646210:CDS | 45.0% | |
| CGGTCCAAAAGCTCAATTGA+AGG | - | chr4_3:51841862-51841881 | None:intergenic | 45.0% | |
| ! | AATTGAGCTTTTGGACCGTG+TGG | + | chr4_3:51841864-51841883 | Msa0646210:CDS | 45.0% |
| ACTTTCGAAGGGGAATGCAT+GGG | + | chr4_3:51841894-51841913 | Msa0646210:CDS | 45.0% | |
| CCATCACATCCTGGTTATGA+CGG | + | chr4_3:51841949-51841968 | Msa0646210:CDS | 45.0% | |
| CATCACATCCTGGTTATGAC+GGG | + | chr4_3:51841950-51841969 | Msa0646210:CDS | 45.0% | |
| !! | GAGTTCTTTTCAGGACAGTG+AGG | + | chr4_3:51842022-51842041 | Msa0646210:CDS | 45.0% |
| TCATTCGCGGAAGCTTATCA+CGG | - | chr4_3:51842101-51842120 | None:intergenic | 45.0% | |
| !! | GAAACGGTTTGAGAGCATCT+TGG | - | chr4_3:51842155-51842174 | None:intergenic | 45.0% |
| !!! | ATATATGTTTTTTATTTTAT+AGG | + | chr4_3:51838711-51838730 | Msa0646210:intron | 5.0% |
| !!! | TAAAATAAACATTTTAAATT+GGG | - | chr4_3:51838786-51838805 | None:intergenic | 5.0% |
| !!! | TTAAAATAAACATTTTAAAT+TGG | - | chr4_3:51838787-51838806 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTATTTATAAC+CGG | - | chr4_3:51839602-51839621 | None:intergenic | 5.0% |
| !!! | ACATATTTTAATTTTATTTT+TGG | + | chr4_3:51839957-51839976 | Msa0646210:intron | 5.0% |
| !! | ATTATAATTGTTTAAATAAA+TGG | - | chr4_3:51840428-51840447 | None:intergenic | 5.0% |
| TCTTGGGTACAGCAACAGGT+AGG | - | chr4_3:51836430-51836449 | None:intergenic | 50.0% | |
| GAGTCGTCCAAACGTGGAAT+TGG | + | chr4_3:51836729-51836748 | Msa0646210:intron | 50.0% | |
| CCCTTGGGCACAAGTTAAGA+AGG | + | chr4_3:51836870-51836889 | Msa0646210:intron | 50.0% | |
| !! | GCCTTCTTAACTTGTGCCCA+AGG | - | chr4_3:51836874-51836893 | None:intergenic | 50.0% |
| ACAACTGAGCTAAGCTCACG+AGG | - | chr4_3:51837148-51837167 | None:intergenic | 50.0% | |
| TTAGCAGAGTCTCATTCGGC+TGG | + | chr4_3:51837498-51837517 | Msa0646210:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr4_3:51838439-51838458 | Msa0646210:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr4_3:51838444-51838463 | None:intergenic | 50.0% | |
| TCAAGCTTCTCTTAGGGGAG+GGG | + | chr4_3:51840212-51840231 | Msa0646210:intron | 50.0% | |
| TCAAGCATCTTAGAGGGGAG+GGG | + | chr4_3:51840315-51840334 | Msa0646210:intron | 50.0% | |
| GGTCCTATAATTAGGGACGG+AGG | - | chr4_3:51840581-51840600 | None:intergenic | 50.0% | |
| TCAAAGACCATGGGATGGGT+TGG | + | chr4_3:51841767-51841786 | Msa0646210:CDS | 50.0% | |
| TAGTAGACCAACCCATCCCA+TGG | - | chr4_3:51841777-51841796 | None:intergenic | 50.0% | |
| GACTTTCGAAGGGGAATGCA+TGG | + | chr4_3:51841893-51841912 | Msa0646210:CDS | 50.0% | |
| GTTCCTCGTTGAAAACGGCT+TGG | - | chr4_3:51841921-51841940 | None:intergenic | 50.0% | |
| CCGTCATAACCAGGATGTGA+TGG | - | chr4_3:51841952-51841971 | None:intergenic | 50.0% | |
| TGGGTCTTGGGTACAGCAAC+AGG | - | chr4_3:51836434-51836453 | None:intergenic | 55.0% | |
| TGTTGCTGTACCCAAGACCC+AGG | + | chr4_3:51836433-51836452 | Msa0646210:CDS | 55.0% | |
| CCAGCGTTCAGACTTCGTGT+CGG | + | chr4_3:51836771-51836790 | Msa0646210:intron | 55.0% | |
| CAAGCTTCTCTTAGGGGAGG+GGG | + | chr4_3:51840213-51840232 | Msa0646210:intron | 55.0% | |
| AAGCTTCTCTTAGGGGAGGG+GGG | + | chr4_3:51840214-51840233 | Msa0646210:intron | 55.0% | |
| CAGGTGAGGGAGTTGACAGA+AGG | + | chr4_3:51841193-51841212 | Msa0646210:CDS | 55.0% | |
| TCGAAAGTCGTGCTGCCACA+CGG | - | chr4_3:51841882-51841901 | None:intergenic | 55.0% | |
| TGTGGCAGCACGACTTTCGA+AGG | + | chr4_3:51841882-51841901 | Msa0646210:CDS | 55.0% | |
| GTGGCAGCACGACTTTCGAA+GGG | + | chr4_3:51841883-51841902 | Msa0646210:CDS | 55.0% | |
| TGGCAGCACGACTTTCGAAG+GGG | + | chr4_3:51841884-51841903 | Msa0646210:CDS | 55.0% | |
| !! | GGACCAAGCCGTTTTCAACG+AGG | + | chr4_3:51841915-51841934 | Msa0646210:CDS | 55.0% |
| GCATGAAGCCCGTCATAACC+AGG | - | chr4_3:51841961-51841980 | None:intergenic | 55.0% | |
| TTCGCGGAAGCTTATCACGG+TGG | - | chr4_3:51842098-51842117 | None:intergenic | 55.0% | |
| GCTCTCAAACCGTTTCCCGA+TGG | + | chr4_3:51842159-51842178 | Msa0646210:CDS | 55.0% | |
| CCGACACGAAGTCTGAACGC+TGG | - | chr4_3:51836774-51836793 | None:intergenic | 60.0% | |
| CGAGGTGTGCCATCGGGAAA+CGG | - | chr4_3:51842171-51842190 | None:intergenic | 60.0% | |
| CCAAACGGTGCGGCTGTCTC+CGG | + | chr4_3:51841571-51841590 | Msa0646210:CDS | 65.0% | |
| CAAACGGTGCGGCTGTCTCC+GGG | + | chr4_3:51841572-51841591 | Msa0646210:CDS | 65.0% | |
| GGTGGTCGGGGTTCGAACCC+CGG | - | chr4_3:51837202-51837221 | None:intergenic | 70.0% | |
| CCGGAGACAGCCGCACCGTT+TGG | - | chr4_3:51841574-51841593 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 51836257 | 51842194 | 51836257 | ID=Msa0646210;Name=Msa0646210 |
| chr4_3 | mRNA | 51836257 | 51842194 | 51836257 | ID=Msa0646210-mRNA-1;Parent=Msa0646210;Name=Msa0646210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|431 |
| chr4_3 | exon | 51836257 | 51836454 | 51836257 | ID=Msa0646210-mRNA-1:exon:12611;Parent=Msa0646210-mRNA-1 |
| chr4_3 | exon | 51841097 | 51842194 | 51841097 | ID=Msa0646210-mRNA-1:exon:12612;Parent=Msa0646210-mRNA-1 |
| chr4_3 | CDS | 51836257 | 51836454 | 51836257 | ID=Msa0646210-mRNA-1:cds;Parent=Msa0646210-mRNA-1 |
| chr4_3 | CDS | 51841097 | 51842194 | 51841097 | ID=Msa0646210-mRNA-1:cds;Parent=Msa0646210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
