Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143770 | A0A396HTM3 | 66.383 | 705 | 120 | 10 | 1 | 590 | 32 | 734 | 0.0 | 871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0143770 | 0.802198 | 6.286264e-49 | -8.615850e-47 |
| Msa0048950 | Msa0143770 | 0.851153 | 1.068392e-60 | -8.615850e-47 |
| Msa0054760 | Msa0143770 | -0.800877 | 1.172893e-48 | -8.615850e-47 |
| Msa0059880 | Msa0143770 | 0.876067 | 1.874871e-68 | -8.615850e-47 |
| Msa0072030 | Msa0143770 | 0.815594 | 8.532681e-52 | -8.615850e-47 |
| Msa0074620 | Msa0143770 | 0.802175 | 6.355854e-49 | -8.615850e-47 |
| Msa0101650 | Msa0143770 | -0.803894 | 2.803983e-49 | -8.615850e-47 |
| Msa0139460 | Msa0143770 | 0.813242 | 2.826374e-51 | -8.615850e-47 |
| Msa0140270 | Msa0143770 | 0.808408 | 3.143632e-50 | -8.615850e-47 |
| Msa0143680 | Msa0143770 | 0.958845 | 8.559934e-117 | -8.615850e-47 |
| Msa0143710 | Msa0143770 | 0.978209 | 2.381367e-145 | -8.615850e-47 |
| Msa0143740 | Msa0143770 | 0.997238 | 4.074121e-239 | -8.615850e-47 |
| Msa0143770 | Msa0147670 | 0.819642 | 1.043273e-52 | -8.615850e-47 |
| Msa0143770 | Msa0150910 | 0.842929 | 1.914569e-58 | -8.615850e-47 |
| Msa0143770 | Msa0155850 | 0.802537 | 5.351678e-49 | -8.615850e-47 |
| Msa0143770 | Msa0163340 | 0.808624 | 2.827136e-50 | -8.615850e-47 |
| Msa0143770 | Msa0177550 | 0.808082 | 3.688615e-50 | -8.615850e-47 |
| Msa0143770 | Msa0190670 | 0.820157 | 7.957477e-53 | -8.615850e-47 |
| Msa0143770 | Msa0212550 | 0.803086 | 4.122367e-49 | -8.615850e-47 |
| Msa0143770 | Msa0219210 | 0.815477 | 9.062862e-52 | -8.615850e-47 |
| Msa0143770 | Msa0252930 | 0.810411 | 1.167938e-50 | -8.615850e-47 |
| Msa0143770 | Msa0259110 | 0.832282 | 1.033108e-55 | -8.615850e-47 |
| Msa0143770 | Msa0259300 | 0.810366 | 1.194814e-50 | -8.615850e-47 |
| Msa0143770 | Msa0265060 | 0.800324 | 1.520488e-48 | -8.615850e-47 |
| Msa0143770 | Msa0274250 | 0.813404 | 2.603373e-51 | -8.615850e-47 |
| Msa0143770 | Msa0274260 | 0.810294 | 1.238257e-50 | -8.615850e-47 |
| Msa0143770 | Msa0278950 | 0.818430 | 1.967834e-52 | -8.615850e-47 |
| Msa0143770 | Msa0298270 | 0.835239 | 1.883457e-56 | -8.615850e-47 |
| Msa0143770 | Msa0336070 | 0.821663 | 3.582282e-53 | -8.615850e-47 |
| Msa0143770 | Msa0342130 | 0.824938 | 6.152158e-54 | -8.615850e-47 |
| Msa0143770 | Msa0342160 | 0.818847 | 1.582760e-52 | -8.615850e-47 |
| Msa0143770 | Msa0343720 | 0.803802 | 2.929810e-49 | -8.615850e-47 |
| Msa0143770 | Msa0374130 | 0.816503 | 5.348247e-52 | -8.615850e-47 |
| Msa0143770 | Msa0430460 | 0.800331 | 1.515593e-48 | -8.615850e-47 |
| Msa0143770 | Msa0469550 | 0.820496 | 6.653061e-53 | -8.615850e-47 |
| Msa0143770 | Msa0491760 | 0.808279 | 3.349292e-50 | -8.615850e-47 |
| Msa0143770 | Msa0491770 | 0.800594 | 1.339530e-48 | -8.615850e-47 |
| Msa0143770 | Msa0515260 | 0.820638 | 6.170758e-53 | -8.615850e-47 |
| Msa0143770 | Msa0535570 | 0.832044 | 1.183125e-55 | -8.615850e-47 |
| Msa0143770 | Msa0538450 | 0.812723 | 3.672873e-51 | -8.615850e-47 |
| Msa0143770 | Msa0538520 | 0.805309 | 1.420694e-49 | -8.615850e-47 |
| Msa0143770 | Msa0538650 | 0.800120 | 1.673025e-48 | -8.615850e-47 |
| Msa0143770 | Msa0548970 | 0.825146 | 5.496272e-54 | -8.615850e-47 |
| Msa0143770 | Msa0549920 | 0.843357 | 1.472448e-58 | -8.615850e-47 |
| Msa0143770 | Msa0549930 | 0.839990 | 1.138499e-57 | -8.615850e-47 |
| Msa0143770 | Msa0554660 | 0.801306 | 9.581758e-49 | -8.615850e-47 |
| Msa0143770 | Msa0584970 | 0.804863 | 1.761253e-49 | -8.615850e-47 |
| Msa0143770 | Msa0591490 | 0.837420 | 5.253494e-57 | -8.615850e-47 |
| Msa0143770 | Msa0594320 | 0.816764 | 4.674825e-52 | -8.615850e-47 |
| Msa0143770 | Msa0599600 | 0.812898 | 3.363256e-51 | -8.615850e-47 |
| Msa0143770 | Msa0602050 | 0.804387 | 2.213641e-49 | -8.615850e-47 |
| Msa0143770 | Msa0603950 | 0.818853 | 1.577800e-52 | -8.615850e-47 |
| Msa0143770 | Msa0605400 | 0.825729 | 3.998526e-54 | -8.615850e-47 |
| Msa0143770 | Msa0605410 | 0.822552 | 2.228231e-53 | -8.615850e-47 |
| Msa0143770 | Msa0605470 | 0.828198 | 1.027292e-54 | -8.615850e-47 |
| Msa0143770 | Msa0623980 | 0.846202 | 2.518528e-59 | -8.615850e-47 |
| Msa0143770 | Msa0631700 | 0.834165 | 3.509695e-56 | -8.615850e-47 |
| Msa0143770 | Msa0640290 | 0.802485 | 5.485816e-49 | -8.615850e-47 |
| Msa0143770 | Msa0643840 | 0.806683 | 7.301847e-50 | -8.615850e-47 |
| Msa0143770 | Msa0645150 | 0.808244 | 3.406905e-50 | -8.615850e-47 |
| Msa0143770 | Msa0646210 | 0.853511 | 2.276397e-61 | -8.615850e-47 |
| Msa0143770 | Msa0670260 | 0.827878 | 1.226279e-54 | -8.615850e-47 |
| Msa0143770 | Msa0670360 | 0.849621 | 2.874590e-60 | -8.615850e-47 |
| Msa0143770 | Msa0671640 | 0.817984 | 2.483287e-52 | -8.615850e-47 |
| Msa0143770 | Msa0678620 | 0.833772 | 4.400081e-56 | -8.615850e-47 |
| Msa0143770 | Msa0684720 | 0.842491 | 2.502927e-58 | -8.615850e-47 |
| Msa0143770 | Msa0711240 | 0.826193 | 3.103521e-54 | -8.615850e-47 |
| Msa0143770 | Msa0719880 | 0.881656 | 2.001782e-70 | -8.615850e-47 |
| Msa0143770 | Msa0727480 | 0.842185 | 3.016814e-58 | -8.615850e-47 |
| Msa0143770 | Msa0735280 | 0.819619 | 1.056068e-52 | -8.615850e-47 |
| Msa0143770 | Msa0735340 | 0.811900 | 5.554680e-51 | -8.615850e-47 |
| Msa0143770 | Msa0751960 | 0.800966 | 1.124397e-48 | -8.615850e-47 |
| Msa0143770 | Msa0763300 | 0.836481 | 9.122949e-57 | -8.615850e-47 |
| Msa0143770 | Msa0768670 | 0.835513 | 1.606530e-56 | -8.615850e-47 |
| Msa0143770 | Msa0768720 | 0.835970 | 1.230264e-56 | -8.615850e-47 |
| Msa0143770 | Msa0777250 | 0.812122 | 4.969483e-51 | -8.615850e-47 |
| Msa0143770 | Msa0791300 | 0.800946 | 1.135074e-48 | -8.615850e-47 |
| Msa0143770 | Msa0802590 | 0.942072 | 1.370358e-101 | -8.615850e-47 |
| Msa0143770 | Msa0814160 | 0.812965 | 3.251242e-51 | -8.615850e-47 |
| Msa0143770 | Msa0824860 | 0.807751 | 4.338326e-50 | -8.615850e-47 |
| Msa0143770 | Msa0841130 | 0.946593 | 3.434916e-105 | -8.615850e-47 |
| Msa0143770 | Msa0841170 | 0.937344 | 4.033515e-98 | -8.615850e-47 |
| Msa0143770 | Msa0854840 | 0.814776 | 1.296963e-51 | -8.615850e-47 |
| Msa0143770 | Msa0863840 | 0.820045 | 8.440112e-53 | -8.615850e-47 |
| Msa0143770 | Msa0883640 | 0.862272 | 5.699671e-64 | -8.615850e-47 |
| Msa0143770 | Msa0902340 | 0.843218 | 1.604398e-58 | -8.615850e-47 |
| Msa0143770 | Msa0910830 | 0.883252 | 5.249668e-71 | -8.615850e-47 |
| Msa0143770 | Msa0913550 | 0.802584 | 5.235636e-49 | -8.615850e-47 |
| Msa0143770 | Msa0960090 | 0.864469 | 1.189511e-64 | -8.615850e-47 |
| Msa0143770 | Msa0967820 | 0.822271 | 2.590055e-53 | -8.615850e-47 |
| Msa0143770 | Msa0985700 | 0.863491 | 2.396901e-64 | -8.615850e-47 |
| Msa0143770 | Msa0993450 | 0.827390 | 1.606594e-54 | -8.615850e-47 |
| Msa0143770 | Msa1003110 | 0.843890 | 1.060421e-58 | -8.615850e-47 |
| Msa0143770 | Msa1020540 | 0.871643 | 5.843431e-67 | -8.615850e-47 |
| Msa0143770 | Msa1021620 | 0.855724 | 5.204739e-62 | -8.615850e-47 |
| Msa0143770 | Msa1024350 | 0.833321 | 5.701925e-56 | -8.615850e-47 |
| Msa0143770 | Msa1026050 | 0.828116 | 1.075289e-54 | -8.615850e-47 |
| Msa0143770 | Msa1041550 | -0.811596 | 6.469237e-51 | -8.615850e-47 |
| Msa0143770 | Msa1041630 | 0.808900 | 2.467663e-50 | -8.615850e-47 |
| Msa0143770 | Msa1046210 | 0.802053 | 6.733901e-49 | -8.615850e-47 |
| Msa0143770 | Msa1046220 | 0.806503 | 7.969591e-50 | -8.615850e-47 |
| Msa0143770 | Msa1061670 | 0.839913 | 1.192443e-57 | -8.615850e-47 |
| Msa0143770 | Msa1076830 | 0.818072 | 2.372605e-52 | -8.615850e-47 |
| Msa0143770 | Msa1081530 | -0.814869 | 1.236788e-51 | -8.615850e-47 |
| Msa0143770 | Msa1081610 | 0.814808 | 1.276110e-51 | -8.615850e-47 |
| Msa0143770 | Msa1087370 | 0.808959 | 2.396403e-50 | -8.615850e-47 |
| Msa0143770 | Msa1087380 | 0.834981 | 2.187888e-56 | -8.615850e-47 |
| Msa0143770 | Msa1091000 | 0.822558 | 2.221618e-53 | -8.615850e-47 |
| Msa0143770 | Msa1106960 | 0.828604 | 8.199521e-55 | -8.615850e-47 |
| Msa0143770 | Msa1109880 | 0.839376 | 1.644386e-57 | -8.615850e-47 |
| Msa0143770 | Msa1109890 | 0.870075 | 1.919138e-66 | -8.615850e-47 |
| Msa0143770 | Msa1133860 | 0.840649 | 7.657447e-58 | -8.615850e-47 |
| Msa0143770 | Msa1149020 | 0.851098 | 1.107287e-60 | -8.615850e-47 |
| Msa0143770 | Msa1152180 | 0.804848 | 1.774058e-49 | -8.615850e-47 |
| Msa0143770 | Msa1166530 | 0.812498 | 4.113860e-51 | -8.615850e-47 |
| Msa0143770 | Msa1214960 | 0.830407 | 2.987720e-55 | -8.615850e-47 |
| Msa0143770 | Msa1216600 | 0.817372 | 3.412466e-52 | -8.615850e-47 |
| Msa0143770 | Msa1249410 | -0.810331 | 1.215459e-50 | -8.615850e-47 |
| Msa0143770 | Msa1265500 | 0.811302 | 7.493284e-51 | -8.615850e-47 |
| Msa0143770 | Msa1286420 | 0.835769 | 1.383588e-56 | -8.615850e-47 |
| Msa0143770 | Msa1296870 | 0.824389 | 8.288918e-54 | -8.615850e-47 |
| Msa0143770 | Msa1300610 | 0.832657 | 8.340652e-56 | -8.615850e-47 |
| Msa0143770 | Msa1323030 | 0.839144 | 1.888637e-57 | -8.615850e-47 |
| Msa0143770 | Msa1323120 | 0.809654 | 1.700693e-50 | -8.615850e-47 |
| Msa0143770 | Msa1323160 | 0.824001 | 1.022331e-53 | -8.615850e-47 |
| Msa0143770 | Msa1329740 | 0.815296 | 9.943962e-52 | -8.615850e-47 |
| Msa0143770 | Msa1357490 | 0.825093 | 5.654849e-54 | -8.615850e-47 |
| Msa0143770 | Msa1357720 | -0.804988 | 1.658188e-49 | -8.615850e-47 |
| Msa0143770 | Msa1357750 | 0.822854 | 1.895390e-53 | -8.615850e-47 |
| Msa0143770 | Msa1357860 | 0.800393 | 1.471645e-48 | -8.615850e-47 |
| Msa0143770 | Msa1359620 | -0.823574 | 1.287577e-53 | -8.615850e-47 |
| Msa0143770 | Msa1373560 | 0.834370 | 3.117379e-56 | -8.615850e-47 |
| Msa0143770 | Msa1376070 | 0.825424 | 4.722793e-54 | -8.615850e-47 |
| Msa0143770 | Msa1377520 | 0.823793 | 1.144054e-53 | -8.615850e-47 |
| Msa0143770 | Msa1378400 | 0.816556 | 5.203536e-52 | -8.615850e-47 |
| Msa0143770 | Msa1386120 | 0.808371 | 3.200425e-50 | -8.615850e-47 |
| Msa0143770 | Msa1403700 | -0.823373 | 1.434487e-53 | -8.615850e-47 |
| Msa0143770 | Msa1407670 | 0.806028 | 1.003319e-49 | -8.615850e-47 |
| Msa0143770 | Msa1409060 | 0.819923 | 8.998528e-53 | -8.615850e-47 |
| Msa0143770 | Msa1420020 | 0.823489 | 1.347670e-53 | -8.615850e-47 |
| Msa0143770 | Msa1421120 | 0.808727 | 2.687119e-50 | -8.615850e-47 |
| Msa0143770 | Msa1426420 | 0.808987 | 2.364281e-50 | -8.615850e-47 |
| Msa0143770 | Msa1427670 | 0.807666 | 4.520772e-50 | -8.615850e-47 |
| Msa0143770 | Msa1440400 | 0.946857 | 2.070073e-105 | -8.615850e-47 |
| Msa0143770 | Msa1443550 | -0.802578 | 5.248568e-49 | -8.615850e-47 |
| Msa0143770 | Msa1449770 | 0.807897 | 4.038040e-50 | -8.615850e-47 |
| Msa0143770 | Msa1459610 | 0.823205 | 1.569810e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143770 | MtrunA17_Chr5g0410171 | 66.383 | 705 | 120 | 10 | 1 | 590 | 32 | 734 | 0.0 | 871 |
| Msa0143770 | MtrunA17_Chr5g0410341 | 88.358 | 335 | 6 | 2 | 288 | 589 | 411 | 745 | 0.0 | 585 |
| Msa0143770 | MtrunA17_Chr5g0410341 | 87.859 | 313 | 14 | 4 | 1 | 289 | 30 | 342 | 0.0 | 555 |
| Msa0143770 | MtrunA17_Chr5g0410201 | 77.744 | 328 | 40 | 2 | 296 | 590 | 1 | 328 | 1.25e-178 | 508 |
| Msa0143770 | MtrunA17_Chr5g0410271 | 77.538 | 325 | 40 | 2 | 298 | 589 | 2 | 326 | 3.09e-175 | 499 |
| Msa0143770 | MtrunA17_Chr6g0457101 | 41.333 | 675 | 291 | 16 | 1 | 588 | 30 | 686 | 7.67e-149 | 446 |
| Msa0143770 | MtrunA17_Chr5g0410461 | 52.660 | 376 | 135 | 7 | 260 | 594 | 96 | 469 | 6.48e-113 | 346 |
| Msa0143770 | MtrunA17_Chr6g0456141 | 52.035 | 344 | 124 | 6 | 288 | 597 | 51 | 387 | 2.79e-111 | 338 |
| Msa0143770 | MtrunA17_Chr6g0456101 | 36.262 | 717 | 311 | 24 | 1 | 583 | 30 | 734 | 1.35e-108 | 343 |
| Msa0143770 | MtrunA17_Chr5g0410371 | 59.122 | 296 | 82 | 4 | 329 | 587 | 1 | 294 | 1.72e-102 | 313 |
| Msa0143770 | MtrunA17_Chr5g0410191 | 80.745 | 161 | 31 | 0 | 429 | 589 | 32 | 192 | 6.04e-83 | 258 |
| Msa0143770 | MtrunA17_Chr5g0410581 | 31.410 | 780 | 327 | 25 | 1 | 590 | 31 | 792 | 7.83e-82 | 273 |
| Msa0143770 | MtrunA17_Chr5g0410291 | 67.358 | 193 | 40 | 5 | 110 | 283 | 1 | 189 | 4.38e-77 | 243 |
| Msa0143770 | MtrunA17_Chr5g0410211 | 63.918 | 194 | 50 | 4 | 110 | 283 | 1 | 194 | 6.62e-71 | 227 |
| Msa0143770 | MtrunA17_Chr5g0410181 | 78.947 | 133 | 28 | 0 | 457 | 589 | 1 | 133 | 3.20e-67 | 215 |
| Msa0143770 | MtrunA17_Chr2g0297701 | 31.148 | 549 | 302 | 17 | 90 | 586 | 44 | 568 | 7.11e-61 | 212 |
| Msa0143770 | MtrunA17_Chr5g0443001 | 31.336 | 584 | 301 | 21 | 91 | 587 | 31 | 601 | 2.86e-57 | 203 |
| Msa0143770 | MtrunA17_Chr2g0297691 | 27.039 | 699 | 392 | 24 | 4 | 609 | 36 | 709 | 3.72e-52 | 191 |
| Msa0143770 | MtrunA17_Chr2g0297681 | 26.984 | 693 | 398 | 21 | 4 | 609 | 36 | 707 | 1.28e-49 | 183 |
| Msa0143770 | MtrunA17_Chr2g0297651 | 26.627 | 676 | 387 | 21 | 4 | 590 | 38 | 693 | 2.49e-49 | 182 |
| Msa0143770 | MtrunA17_Chr3g0100741 | 26.381 | 561 | 318 | 12 | 91 | 570 | 33 | 579 | 6.40e-47 | 174 |
| Msa0143770 | MtrunA17_Chr5g0410451 | 49.123 | 171 | 82 | 1 | 429 | 594 | 71 | 241 | 1.51e-46 | 164 |
| Msa0143770 | MtrunA17_Chr2g0297491 | 34.591 | 318 | 161 | 7 | 329 | 609 | 88 | 395 | 5.31e-46 | 167 |
| Msa0143770 | MtrunA17_Chr5g0410541 | 52.121 | 165 | 73 | 2 | 429 | 588 | 53 | 216 | 1.67e-43 | 155 |
| Msa0143770 | MtrunA17_Chr6g0456151 | 42.023 | 257 | 118 | 9 | 1 | 236 | 30 | 276 | 1.22e-42 | 155 |
| Msa0143770 | MtrunA17_Chr5g0410471 | 45.909 | 220 | 105 | 5 | 5 | 221 | 105 | 313 | 8.68e-41 | 150 |
| Msa0143770 | MtrunA17_Chr2g0297481 | 32.588 | 313 | 170 | 7 | 329 | 609 | 186 | 489 | 1.98e-40 | 154 |
| Msa0143770 | MtrunA17_Chr3g0100301 | 41.327 | 196 | 78 | 2 | 418 | 583 | 209 | 397 | 6.11e-39 | 148 |
| Msa0143770 | MtrunA17_Chr3g0096941 | 24.740 | 578 | 333 | 15 | 91 | 581 | 33 | 595 | 1.40e-38 | 150 |
| Msa0143770 | MtrunA17_Chr2g0297711 | 26.542 | 535 | 301 | 17 | 90 | 587 | 47 | 526 | 8.02e-38 | 147 |
| Msa0143770 | MtrunA17_Chr5g0410411 | 39.464 | 261 | 107 | 9 | 1 | 221 | 30 | 279 | 2.44e-36 | 139 |
| Msa0143770 | MtrunA17_Chr5g0410381 | 39.837 | 246 | 101 | 8 | 82 | 286 | 3 | 242 | 4.33e-36 | 135 |
| Msa0143770 | MtrunA17_Chr5g0410251 | 65.060 | 83 | 29 | 0 | 1 | 83 | 28 | 110 | 3.12e-32 | 120 |
| Msa0143770 | MtrunA17_Chr2g0286601 | 32.765 | 293 | 153 | 6 | 311 | 569 | 371 | 653 | 7.09e-30 | 125 |
| Msa0143770 | MtrunA17_Chr5g0410511 | 39.881 | 168 | 96 | 1 | 429 | 591 | 32 | 199 | 1.20e-29 | 116 |
| Msa0143770 | MtrunA17_Chr5g0410501 | 45.139 | 144 | 73 | 3 | 289 | 428 | 147 | 288 | 1.50e-29 | 119 |
| Msa0143770 | MtrunA17_Chr3g0098481 | 28.931 | 318 | 172 | 8 | 316 | 587 | 22 | 331 | 3.11e-28 | 116 |
| Msa0143770 | MtrunA17_Chr3g0102001 | 29.276 | 304 | 165 | 6 | 328 | 588 | 440 | 736 | 2.76e-26 | 114 |
| Msa0143770 | MtrunA17_Chr2g0286551 | 24.664 | 596 | 319 | 16 | 94 | 583 | 83 | 654 | 1.28e-24 | 108 |
| Msa0143770 | MtrunA17_Chr2g0286561 | 38.849 | 139 | 78 | 1 | 431 | 569 | 47 | 178 | 2.55e-24 | 101 |
| Msa0143770 | MtrunA17_Chr5g0410551 | 50.476 | 105 | 46 | 3 | 329 | 429 | 1 | 103 | 2.84e-23 | 95.5 |
| Msa0143770 | MtrunA17_Chr1g0211541 | 25.541 | 462 | 250 | 18 | 101 | 508 | 6 | 427 | 2.17e-22 | 101 |
| Msa0143770 | MtrunA17_Chr3g0098301 | 26.861 | 309 | 182 | 8 | 316 | 583 | 88 | 393 | 3.75e-22 | 99.4 |
| Msa0143770 | MtrunA17_Chr5g0410561 | 37.321 | 209 | 120 | 7 | 32 | 236 | 2 | 203 | 7.78e-22 | 94.4 |
| Msa0143770 | MtrunA17_Chr5g0439081 | 36.076 | 158 | 94 | 3 | 428 | 580 | 41 | 196 | 3.75e-21 | 92.4 |
| Msa0143770 | MtrunA17_Chr2g0284541 | 28.391 | 317 | 184 | 7 | 300 | 581 | 322 | 630 | 1.31e-19 | 93.2 |
| Msa0143770 | MtrunA17_Chr3g0098531 | 27.234 | 235 | 136 | 4 | 385 | 585 | 48 | 281 | 3.81e-19 | 88.6 |
| Msa0143770 | MtrunA17_Chr5g0439061 | 27.740 | 292 | 172 | 5 | 329 | 583 | 437 | 726 | 8.73e-19 | 90.5 |
| Msa0143770 | MtrunA17_Chr2g0284501 | 28.041 | 296 | 168 | 7 | 322 | 581 | 362 | 648 | 1.20e-18 | 90.1 |
| Msa0143770 | MtrunA17_Chr5g0410441 | 48.889 | 90 | 40 | 3 | 344 | 429 | 1 | 88 | 2.58e-18 | 80.9 |
| Msa0143770 | MtrunA17_Chr3g0100921 | 40.650 | 123 | 72 | 1 | 448 | 569 | 2 | 124 | 8.18e-18 | 80.5 |
| Msa0143770 | MtrunA17_Chr5g0439051 | 34.591 | 159 | 102 | 2 | 429 | 586 | 50 | 207 | 1.09e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143770 | AT3G18670.1 | 35.751 | 579 | 281 | 19 | 70 | 587 | 35 | 583 | 4.60e-98 | 311 |
| Msa0143770 | AT3G18670.2 | 33.654 | 624 | 288 | 19 | 70 | 587 | 35 | 638 | 2.00e-95 | 306 |
| Msa0143770 | AT5G04690.3 | 30.756 | 582 | 312 | 14 | 81 | 587 | 66 | 631 | 2.69e-66 | 229 |
| Msa0143770 | AT5G04690.1 | 31.616 | 563 | 312 | 16 | 81 | 587 | 66 | 611 | 1.08e-64 | 224 |
| Msa0143770 | AT5G04690.2 | 30.201 | 596 | 311 | 15 | 81 | 587 | 66 | 645 | 5.92e-64 | 223 |
| Msa0143770 | AT5G04700.1 | 29.711 | 589 | 310 | 15 | 90 | 587 | 80 | 655 | 4.99e-61 | 215 |
| Msa0143770 | AT5G04680.3 | 28.767 | 584 | 316 | 17 | 90 | 587 | 67 | 636 | 1.09e-53 | 194 |
| Msa0143770 | AT5G04680.4 | 28.523 | 596 | 316 | 17 | 90 | 587 | 67 | 650 | 5.24e-52 | 190 |
| Msa0143770 | AT5G04730.1 | 29.795 | 537 | 284 | 16 | 138 | 587 | 58 | 588 | 4.34e-50 | 183 |
| Msa0143770 | AT5G04680.2 | 28.571 | 532 | 274 | 14 | 151 | 587 | 7 | 527 | 2.09e-48 | 177 |
| Msa0143770 | AT5G04680.1 | 27.564 | 624 | 315 | 22 | 90 | 587 | 67 | 679 | 5.59e-47 | 176 |
| Msa0143770 | AT5G35810.1 | 33.887 | 301 | 157 | 6 | 329 | 589 | 35 | 333 | 9.76e-47 | 168 |
| Msa0143770 | AT3G54065.1 | 39.535 | 172 | 68 | 2 | 415 | 550 | 8 | 179 | 1.30e-32 | 125 |
| Msa0143770 | AT5G04700.2 | 25.815 | 399 | 224 | 12 | 90 | 429 | 80 | 465 | 6.68e-24 | 105 |
| Msa0143770 | AT3G54070.1 | 28.324 | 173 | 111 | 6 | 66 | 232 | 24 | 189 | 6.46e-12 | 66.6 |
| Msa0143770 | AT5G35830.1 | 30.000 | 160 | 101 | 4 | 78 | 232 | 73 | 226 | 6.65e-12 | 67.0 |
Find 144 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCACTTGGCAGGATATTT+AGG | 0.127030 | 1_4:+2830158 | Msa0143770:CDS |
| CCAAAGAATTCAAGAGTTTA+AGG | 0.157617 | 1_4:+2829881 | Msa0143770:CDS |
| TTCACTTGCTATGCTCTTAA+AGG | 0.220345 | 1_4:+2831166 | Msa0143770:CDS |
| CCTTAAACTCTTGAATTCTT+TGG | 0.238324 | 1_4:-2829881 | None:intergenic |
| TAAAGAAGCCTGGAATAAAT+TGG | 0.241875 | 1_4:+2826776 | Msa0143770:CDS |
| ATACATGATGCAACTGTAAA+TGG | 0.242921 | 1_4:+2830086 | Msa0143770:CDS |
| TTAGAACGCGCACCAATTTC+AGG | 0.251761 | 1_4:-2826648 | None:intergenic |
| TACATACCTTGCTCAATATC+TGG | 0.253912 | 1_4:-2826831 | None:intergenic |
| CTTCGCTATATTCGTGTTTC+CGG | 0.254247 | 1_4:-2827942 | None:intergenic |
| AATATATTCCACATCCTCTA+TGG | 0.260429 | 1_4:+2827781 | Msa0143770:CDS |
| GTGACCTCTATTCCTGAAAT+TGG | 0.292763 | 1_4:+2826636 | Msa0143770:CDS |
| TGCACTTGGCAGGATATTTA+GGG | 0.308043 | 1_4:+2830159 | Msa0143770:CDS |
| TTTCCAAGTGGTAGTGGATA+TGG | 0.311953 | 1_4:+2828375 | Msa0143770:CDS |
| ACTTCGGTCCTTCTCTTCAT+TGG | 0.319322 | 1_4:+2831026 | Msa0143770:CDS |
| AATTGTATCCATCAGGAATA+AGG | 0.321064 | 1_4:+2829799 | Msa0143770:intron |
| CTTCACGTTGCGGTAGTTGC+TGG | 0.322177 | 1_4:+2827815 | Msa0143770:CDS |
| CTAAGACTGAATATGAGATT+TGG | 0.338368 | 1_4:+2826667 | Msa0143770:CDS |
| AGGGTAATCCTGACCTCTTA+TGG | 0.352153 | 1_4:+2829991 | Msa0143770:CDS |
| CGAGGAAATTGTGAAGAAAT+TGG | 0.372095 | 1_4:+2827841 | Msa0143770:CDS |
| ATGCAAACTCGTTTATTAAG+AGG | 0.378242 | 1_4:+2827747 | Msa0143770:CDS |
| AACAGGGATTTCACCATCAT+TGG | 0.379563 | 1_4:-2828023 | None:intergenic |
| TGTTCTTCTTGCTGCTGCTA+AGG | 0.379583 | 1_4:+2828042 | Msa0143770:CDS |
| TGGTGAAAGCTGGGGAGAAA+TGG | 0.379583 | 1_4:+2830823 | Msa0143770:CDS |
| GATAAGTAATAAGTTTCAAT+TGG | 0.388393 | 1_4:-2831302 | None:intergenic |
| AGTTGCACCCAATTTATTCC+AGG | 0.399506 | 1_4:-2826784 | None:intergenic |
| CACAAGGAGCTGGTGAAAGC+TGG | 0.403742 | 1_4:+2830813 | Msa0143770:intron |
| GCTGCAGCTTTCACTGTCCC+TGG | 0.408383 | 1_4:+2830906 | Msa0143770:CDS |
| TTAGCAGCAGCAAGAAGAAC+AGG | 0.410668 | 1_4:-2828040 | None:intergenic |
| TAGAAACCACAGAGAAGAAA+AGG | 0.416389 | 1_4:-2831124 | None:intergenic |
| TTCCAAGTGGTAGTGGATAT+GGG | 0.416844 | 1_4:+2828376 | Msa0143770:CDS |
| AAATGCCGTGTAGACGCATT+TGG | 0.419337 | 1_4:+2830125 | Msa0143770:CDS |
| AATTCCATGTTGCACTTGGC+AGG | 0.419647 | 1_4:+2830149 | Msa0143770:CDS |
| ATCAGAACTTAGAGAGGCTT+CGG | 0.421195 | 1_4:+2829905 | Msa0143770:CDS |
| GGGTAATCCTGACCTCTTAT+GGG | 0.423361 | 1_4:+2829992 | Msa0143770:CDS |
| CTAATATGAGTAAGATTCTC+TGG | 0.424630 | 1_4:-2826738 | None:intergenic |
| TCACTTGCTATGCTCTTAAA+GGG | 0.427681 | 1_4:+2831167 | Msa0143770:CDS |
| CATTGGTCTTCATAGATAAC+AGG | 0.427879 | 1_4:-2828006 | None:intergenic |
| ACCTTAGTGGCAATGACTTA+AGG | 0.429666 | 1_4:-2831082 | None:intergenic |
| AGATGCAAAGAGAAATTCTA+TGG | 0.430747 | 1_4:+2830222 | Msa0143770:CDS |
| TTCACGTTGCGGTAGTTGCT+GGG | 0.432176 | 1_4:+2827816 | Msa0143770:CDS |
| TCTCTTTGCATCTGCATAGC+AGG | 0.438079 | 1_4:-2830212 | None:intergenic |
| GAGATTTGGAACAGGAAGAA+TGG | 0.441267 | 1_4:+2826681 | Msa0143770:CDS |
| CCACAAATCACACTTTGAAT+CGG | 0.443086 | 1_4:+2828308 | Msa0143770:CDS |
| TCTGTGTTTCCAAGTGGTAG+TGG | 0.443413 | 1_4:+2828369 | Msa0143770:CDS |
| CTGAATATGAGATTTGGAAC+AGG | 0.444534 | 1_4:+2826673 | Msa0143770:CDS |
| GTTCTTCTTGCTGCTGCTAA+GGG | 0.445513 | 1_4:+2828043 | Msa0143770:CDS |
| GACGGAACTAGAACGATAAC+AGG | 0.453839 | 1_4:-2831233 | None:intergenic |
| CGATTCAAAGTGTGATTTGT+GGG | 0.456154 | 1_4:-2828307 | None:intergenic |
| TATAGCGAAGTGTATGACTA+TGG | 0.458675 | 1_4:+2827955 | Msa0143770:CDS |
| TCCTTAAGTCATTGCCACTA+AGG | 0.460081 | 1_4:+2831081 | Msa0143770:CDS |
| TCTTGTGGGACATGGTCTGT+GGG | 0.464135 | 1_4:+2826608 | Msa0143770:CDS |
| TCAATGGCCCATAAGAGGTC+AGG | 0.465739 | 1_4:-2829999 | None:intergenic |
| TTTCAGCGTAACGAGCCGTT+AGG | 0.467061 | 1_4:-2831052 | None:intergenic |
| GTTTATAGATGCAATGAGAA+AGG | 0.467103 | 1_4:+2829971 | Msa0143770:CDS |
| TTGTGGGCAAGAGGCATTTG+AGG | 0.467341 | 1_4:-2828291 | None:intergenic |
| CTTGTTAGAAACTATCTTGT+GGG | 0.467922 | 1_4:+2826594 | None:intergenic |
| ATGCGTGCCAATGCGTATAA+TGG | 0.471182 | 1_4:-2828342 | None:intergenic |
| TGTGCAGCGATTTATATTGA+AGG | 0.474499 | 1_4:-2827697 | None:intergenic |
| TTCATATTGCTAAAGAAGCC+TGG | 0.477292 | 1_4:+2826766 | Msa0143770:CDS |
| AAAGAAGCCTGGAATAAATT+GGG | 0.481257 | 1_4:+2826777 | Msa0143770:CDS |
| ACAAGGAGCTGGTGAAAGCT+GGG | 0.481894 | 1_4:+2830814 | Msa0143770:intron |
| GGTGAAAGCTGGGGAGAAAT+GGG | 0.482292 | 1_4:+2830824 | Msa0143770:CDS |
| AGCTGGTTCATTTACTCTTG+TGG | 0.482801 | 1_4:+2830857 | Msa0143770:CDS |
| AGATTTGGAACAGGAAGAAT+GGG | 0.485550 | 1_4:+2826682 | Msa0143770:CDS |
| TCAGCTCAGCAACAAGAGCT+AGG | 0.486371 | 1_4:-2827919 | None:intergenic |
| CATAGCAAGTGAAGCACAGA+AGG | 0.486804 | 1_4:-2831156 | None:intergenic |
| ATCTTGTGGGACATGGTCTG+TGG | 0.486835 | 1_4:+2826607 | Msa0143770:CDS |
| GTGAAGAAATTGGTGAAGGA+AGG | 0.488215 | 1_4:+2827851 | Msa0143770:CDS |
| TTGCATCTGCATAGCAGGAC+CGG | 0.495069 | 1_4:-2830207 | None:intergenic |
| ATATATTCCACATCCTCTAT+GGG | 0.496055 | 1_4:+2827782 | Msa0143770:CDS |
| TTGTCTTGATTGTTTCCACC+AGG | 0.496117 | 1_4:-2830924 | None:intergenic |
| TTGTACACCGTTGGAAGACC+TGG | 0.502955 | 1_4:+2828096 | Msa0143770:CDS |
| TTTATAGATGCAATGAGAAA+GGG | 0.503030 | 1_4:+2829972 | Msa0143770:CDS |
| ATCATGTATGAGTTCGAAAA+CGG | 0.503307 | 1_4:-2830072 | None:intergenic |
| TGCGATAATTATCATCGGCC+AGG | 0.509460 | 1_4:-2828114 | None:intergenic |
| TGGCAATTCCATGTTGCACT+TGG | 0.511014 | 1_4:+2830145 | Msa0143770:CDS |
| TCTTTACCGTTGTACACCGT+TGG | 0.515694 | 1_4:+2828087 | Msa0143770:CDS |
| TCTGATCTTGATCGTAGATC+CGG | 0.515841 | 1_4:+2830188 | Msa0143770:CDS |
| CGCACCAATTTCAGGAATAG+AGG | 0.521001 | 1_4:-2826640 | None:intergenic |
| GCTCTTGTTGCTGAGCTGAC+CGG | 0.526277 | 1_4:+2827923 | Msa0143770:CDS |
| CCGATTCAAAGTGTGATTTG+TGG | 0.526820 | 1_4:-2828308 | None:intergenic |
| TGCAAACTCGTTTATTAAGA+GGG | 0.527286 | 1_4:+2827748 | Msa0143770:CDS |
| TGTGATGTCGTGCAAGAACA+AGG | 0.535047 | 1_4:-2830955 | None:intergenic |
| GAGGCATTTGAGGAAATCGT+TGG | 0.537554 | 1_4:-2828281 | None:intergenic |
| GGTCCTCCCCATAGAGGATG+TGG | 0.539677 | 1_4:-2827789 | None:intergenic |
| AAGAGAAATTCTATGGTTCA+AGG | 0.541072 | 1_4:+2830229 | Msa0143770:CDS |
| TGTGCAACCATTATACGCAT+TGG | 0.543058 | 1_4:+2828335 | Msa0143770:CDS |
| AGTGCGAAAAGTAACCTTAG+TGG | 0.548121 | 1_4:-2831095 | None:intergenic |
| ATGTTGCAAGCAGCAAAGCA+TGG | 0.548691 | 1_4:+2829939 | Msa0143770:CDS |
| AACCCATATCCACTACCACT+TGG | 0.557493 | 1_4:-2828378 | None:intergenic |
| AAGTGTGATTTGTGGGCAAG+AGG | 0.558162 | 1_4:-2828300 | None:intergenic |
| TCTTGTTAGAAACTATCTTG+TGG | 0.559427 | 1_4:+2826593 | None:intergenic |
| AGAAACTATCTTGTGGGACA+TGG | 0.562860 | 1_4:+2826600 | None:intergenic |
| AGAAACCACAGAGAAGAAAA+GGG | 0.563826 | 1_4:-2831123 | None:intergenic |
| TGTTGCAAGCAGCAAAGCAT+GGG | 0.564523 | 1_4:+2829940 | Msa0143770:CDS |
| GCTTTAATTTGCAGGTGTGG+TGG | 0.564757 | 1_4:+2827664 | Msa0143770:intron |
| ACTTGAAAATCTCAAGGAAG+AGG | 0.567742 | 1_4:-2831265 | None:intergenic |
| TAAGGAATCAGAACTTAGAG+AGG | 0.568613 | 1_4:+2829899 | Msa0143770:CDS |
| GCCGATGATAATTATCGCAA+TGG | 0.574637 | 1_4:+2828118 | Msa0143770:CDS |
| TGAAGAAATTGGTGAAGGAA+GGG | 0.574748 | 1_4:+2827852 | Msa0143770:CDS |
| CAGCTCAGCAACAAGAGCTA+GGG | 0.580236 | 1_4:-2827918 | None:intergenic |
| AAATGGGCAAAAGATACAGC+TGG | 0.580445 | 1_4:+2830840 | Msa0143770:CDS |
| TTATCTATGAAGACCAATGA+TGG | 0.582929 | 1_4:+2828010 | Msa0143770:CDS |
| ACCTTGCTCAATATCTGGAT+CGG | 0.583770 | 1_4:-2826826 | None:intergenic |
| TAAGAAAATATCACGGTCAG+AGG | 0.584733 | 1_4:+2827982 | Msa0143770:CDS |
| TGCGGTAGTTGCTGGGCACG+AGG | 0.589759 | 1_4:+2827823 | Msa0143770:CDS |
| TCTCTTCATTGGAATCCTAA+CGG | 0.591072 | 1_4:+2831037 | Msa0143770:CDS |
| CTGTAGACTTGAAAATCTCA+AGG | 0.594097 | 1_4:-2831271 | None:intergenic |
| GCAGCTTTCACTGTCCCTGG+TGG | 0.601445 | 1_4:+2830909 | Msa0143770:CDS |
| AGGAAGAGGCGCAATTGTGA+CGG | 0.607133 | 1_4:-2831251 | None:intergenic |
| AGTATATTGAGAGCGGTGAG+TGG | 0.609550 | 1_4:+2827720 | Msa0143770:CDS |
| ACCATTGCGATAATTATCAT+CGG | 0.609954 | 1_4:-2828119 | None:intergenic |
| TAGAACGATAACAGGAACAC+TGG | 0.611619 | 1_4:-2831225 | None:intergenic |
| AACTACCGCAACGTGAAGAA+CGG | 0.612033 | 1_4:-2827810 | None:intergenic |
| AATTGCCAAATGCGTCTACA+CGG | 0.612652 | 1_4:-2830130 | None:intergenic |
| TTAGGATTCCAATGAAGAGA+AGG | 0.614556 | 1_4:-2831034 | None:intergenic |
| ATGCCTTCTGTGTTTCCAAG+TGG | 0.615562 | 1_4:+2828363 | Msa0143770:CDS |
| TGCAACTGTAAATGGACGGA+AGG | 0.618113 | 1_4:+2830094 | Msa0143770:CDS |
| CTTGTGGGACATGGTCTGTG+GGG | 0.619674 | 1_4:+2826609 | Msa0143770:CDS |
| CTACCACTTGGAAACACAGA+AGG | 0.622603 | 1_4:-2828366 | None:intergenic |
| AAGAACGGTCCTCCCCATAG+AGG | 0.622685 | 1_4:-2827795 | None:intergenic |
| GCCGATCCAGATATTGAGCA+AGG | 0.624425 | 1_4:+2826825 | Msa0143770:CDS |
| AATTGTGAAGAAATTGGTGA+AGG | 0.625256 | 1_4:+2827847 | Msa0143770:CDS |
| ATATCCTGCCAAGTGCAACA+TGG | 0.627952 | 1_4:-2830153 | None:intergenic |
| GGTGGAAACAATCAAGACAA+TGG | 0.629811 | 1_4:+2830927 | Msa0143770:CDS |
| ATGATGCAACTGTAAATGGA+CGG | 0.638038 | 1_4:+2830090 | Msa0143770:CDS |
| CATATCATTCAACTAACATG+TGG | 0.643061 | 1_4:+2826714 | Msa0143770:CDS |
| CAAGGAGCTGGTGAAAGCTG+GGG | 0.651622 | 1_4:+2830815 | Msa0143770:intron |
| TGTCTTGATTGTTTCCACCA+GGG | 0.652150 | 1_4:-2830923 | None:intergenic |
| GAGGACCGTTCTTCACGTTG+CGG | 0.655029 | 1_4:+2827805 | Msa0143770:CDS |
| GTGATGTCGTGCAAGAACAA+GGG | 0.659099 | 1_4:-2830954 | None:intergenic |
| ATTCCACATCCTCTATGGGG+AGG | 0.660094 | 1_4:+2827786 | Msa0143770:CDS |
| TAGCAGCAGCAAGAAGAACA+GGG | 0.665135 | 1_4:-2828039 | None:intergenic |
| TTGGAACAGGAAGAATGGGA+AGG | 0.668429 | 1_4:+2826686 | Msa0143770:CDS |
| TATTTCAAGAGCTACACGGT+AGG | 0.669157 | 1_4:-2829844 | None:intergenic |
| GTGAAAATGAAAGACAATCG+AGG | 0.669964 | 1_4:+2827887 | Msa0143770:CDS |
| TCATCGGCCAGGTCTTCCAA+CGG | 0.671668 | 1_4:-2828103 | None:intergenic |
| TGGTATATAAGAAAATATCA+CGG | 0.677081 | 1_4:+2827975 | Msa0143770:CDS |
| CTACGATCAAGATCAGAGGA+AGG | 0.678354 | 1_4:-2830182 | None:intergenic |
| CTGCACAAGTATATTGAGAG+CGG | 0.680709 | 1_4:+2827713 | Msa0143770:CDS |
| GGATCTACGATCAAGATCAG+AGG | 0.680818 | 1_4:-2830186 | None:intergenic |
| TCAATATTTCAAGAGCTACA+CGG | 0.684421 | 1_4:-2829848 | None:intergenic |
| GGTCTTCCAACGGTGTACAA+CGG | 0.687225 | 1_4:-2828093 | None:intergenic |
| TATATTCCACATCCTCTATG+GGG | 0.688060 | 1_4:+2827783 | Msa0143770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAAATACTTATAATATT+AGG | + | chr1_4:2827578-2827597 | Msa0143770:intron | 10.0% |
| !! | CTTAAATACTTATAATATTA+GGG | + | chr1_4:2827579-2827598 | Msa0143770:intron | 10.0% |
| !! | ACTTTATAAAAGAAATTTAA+AGG | + | chr1_4:2828628-2828647 | Msa0143770:intron | 10.0% |
| !! | TTATTAAACAGTAAAAGTTT+AGG | + | chr1_4:2827422-2827441 | Msa0143770:intron | 15.0% |
| !!! | ATTCAAATGTACTTATTTTT+GGG | - | chr1_4:2827515-2827534 | None:intergenic | 15.0% |
| !!! | TATTCAAATGTACTTATTTT+TGG | - | chr1_4:2827516-2827535 | None:intergenic | 15.0% |
| !! | ATTTAAAGGTGATTTATAAA+AGG | + | chr1_4:2828642-2828661 | Msa0143770:intron | 15.0% |
| !! | TTTAAAGGTGATTTATAAAA+GGG | + | chr1_4:2828643-2828662 | Msa0143770:intron | 15.0% |
| !!! | CAAAAGTTTGTATTTTATAA+AGG | - | chr1_4:2828685-2828704 | None:intergenic | 15.0% |
| !! | TACTTCCAATAATATATTAA+AGG | + | chr1_4:2828761-2828780 | Msa0143770:intron | 15.0% |
| !! | AAACTCCTTTAATATATTAT+TGG | - | chr1_4:2828769-2828788 | None:intergenic | 15.0% |
| !! | TAATTAATTAATCACAAAGA+GGG | - | chr1_4:2829760-2829779 | None:intergenic | 15.0% |
| !! | TTAATTAATTAATCACAAAG+AGG | - | chr1_4:2829761-2829780 | None:intergenic | 15.0% |
| !!! | AAAAACTAAATTTGAAATTC+TGG | + | chr1_4:2830518-2830537 | Msa0143770:intron | 15.0% |
| !! | TACACATTAATCTATTCTTT+GGG | + | chr1_4:2826866-2826885 | Msa0143770:intron | 20.0% |
| !! | AACTATGTCTAATATGTATA+GGG | - | chr1_4:2826908-2826927 | None:intergenic | 20.0% |
| !! | AAACTATGTCTAATATGTAT+AGG | - | chr1_4:2826909-2826928 | None:intergenic | 20.0% |
| !!! | AATTCATATGTTTGATTTCA+TGG | + | chr1_4:2827093-2827112 | Msa0143770:intron | 20.0% |
| !!! | ATTCATATGTTTGATTTCAT+GGG | + | chr1_4:2827094-2827113 | Msa0143770:intron | 20.0% |
| !!! | ACACTTTATTTATTATGAAG+TGG | - | chr1_4:2827164-2827183 | None:intergenic | 20.0% |
| !!! | TTTGAATATTGTGATTTTAG+TGG | + | chr1_4:2827528-2827547 | Msa0143770:intron | 20.0% |
| !!! | TTGAATATTGTGATTTTAGT+GGG | + | chr1_4:2827529-2827548 | Msa0143770:intron | 20.0% |
| !!! | CATTTATTTTCCTTACTAAT+TGG | - | chr1_4:2827606-2827625 | None:intergenic | 20.0% |
| !! | CAATTAGTAAGGAAAATAAA+TGG | + | chr1_4:2827604-2827623 | Msa0143770:intron | 20.0% |
| !! | TGGTATATAAGAAAATATCA+CGG | + | chr1_4:2827975-2827994 | Msa0143770:CDS | 20.0% |
| !!! | TTGTTAATCCTTGTTTAAAT+CGG | + | chr1_4:2829682-2829701 | Msa0143770:intron | 20.0% |
| !! | AATTAATTAATCACAAAGAG+GGG | - | chr1_4:2829759-2829778 | None:intergenic | 20.0% |
| !!! | TCAAATTTAGTTTTTGAAGT+TGG | - | chr1_4:2830513-2830532 | None:intergenic | 20.0% |
| !! | ATACATGACATTTAAATAAG+TGG | + | chr1_4:2830581-2830600 | Msa0143770:intron | 20.0% |
| !! | ATGAATAAGATAATAATGTG+TGG | - | chr1_4:2830639-2830658 | None:intergenic | 20.0% |
| !! | GATAAGTAATAAGTTTCAAT+TGG | - | chr1_4:2831305-2831324 | None:intergenic | 20.0% |
| ! | GTACACATTAATCTATTCTT+TGG | + | chr1_4:2826865-2826884 | Msa0143770:intron | 25.0% |
| ! | TAGTTTCTAAATGTAGTGAA+AGG | + | chr1_4:2826923-2826942 | Msa0143770:intron | 25.0% |
| !! | CAATGAGGAAAGATTTTTAA+AGG | + | chr1_4:2827317-2827336 | Msa0143770:intron | 25.0% |
| ! | AGCTAATGTTTATTAGCAAT+AGG | + | chr1_4:2827344-2827363 | Msa0143770:intron | 25.0% |
| ! | ATGTTTATTAGCAATAGGTA+AGG | + | chr1_4:2827349-2827368 | Msa0143770:intron | 25.0% |
| ! | TGTTTATTAGCAATAGGTAA+GGG | + | chr1_4:2827350-2827369 | Msa0143770:intron | 25.0% |
| ! | TCGATTCAATATTGTATCTT+AGG | + | chr1_4:2828240-2828259 | Msa0143770:intron | 25.0% |
| ! | AATTTGAAAAGTAAGCGAAA+TGG | - | chr1_4:2828460-2828479 | None:intergenic | 25.0% |
| !!! | ATTTCGCTTACTTTTCAAAT+TGG | + | chr1_4:2828459-2828478 | Msa0143770:intron | 25.0% |
| !!! | TTTCGCTTACTTTTCAAATT+GGG | + | chr1_4:2828460-2828479 | Msa0143770:intron | 25.0% |
| ! | TGCAAACTTATAATGTTACA+CGG | + | chr1_4:2828518-2828537 | Msa0143770:intron | 25.0% |
| !! | TTGTATTTTATAAAGGACAC+TGG | - | chr1_4:2828678-2828697 | None:intergenic | 25.0% |
| ! | AATGAATACTATATGTGTAG+TGG | - | chr1_4:2828731-2828750 | None:intergenic | 25.0% |
| ! | GAGTAAATAATGAATGAGAT+TGG | + | chr1_4:2828993-2829012 | Msa0143770:intron | 25.0% |
| ! | ATGAACACACATATATAACA+GGG | - | chr1_4:2829561-2829580 | None:intergenic | 25.0% |
| ! | TATGAACACACATATATAAC+AGG | - | chr1_4:2829562-2829581 | None:intergenic | 25.0% |
| !!! | CTTTTACGCATATTTTTTTC+AGG | + | chr1_4:2829592-2829611 | Msa0143770:intron | 25.0% |
| !!! | CTAATATACCGATTTAAACA+AGG | - | chr1_4:2829693-2829712 | None:intergenic | 25.0% |
| ! | GAATGATTGTACTTACAATA+AGG | - | chr1_4:2829734-2829753 | None:intergenic | 25.0% |
| !! | TATATTTTCCTTATTCCTGA+TGG | - | chr1_4:2829810-2829829 | None:intergenic | 25.0% |
| ! | TTTATAGATGCAATGAGAAA+GGG | + | chr1_4:2829972-2829991 | Msa0143770:CDS | 25.0% |
| ! | GCCATTGATAAAAATAAAAG+AGG | + | chr1_4:2830014-2830033 | Msa0143770:CDS | 25.0% |
| !!! | GCCTCTTTTATTTTTATCAA+TGG | - | chr1_4:2830018-2830037 | None:intergenic | 25.0% |
| ! | AATGTCATGTATCTCAAAAT+TGG | - | chr1_4:2830573-2830592 | None:intergenic | 25.0% |
| !! | CATATTGTGAAATTTTGTGA+AGG | + | chr1_4:2830707-2830726 | Msa0143770:intron | 25.0% |
| CTAAGACTGAATATGAGATT+TGG | + | chr1_4:2826667-2826686 | Msa0143770:CDS | 30.0% | |
| CATATCATTCAACTAACATG+TGG | + | chr1_4:2826714-2826733 | Msa0143770:CDS | 30.0% | |
| CTAATATGAGTAAGATTCTC+TGG | - | chr1_4:2826741-2826760 | None:intergenic | 30.0% | |
| TAAAGAAGCCTGGAATAAAT+TGG | + | chr1_4:2826776-2826795 | Msa0143770:CDS | 30.0% | |
| AAAGAAGCCTGGAATAAATT+GGG | + | chr1_4:2826777-2826796 | Msa0143770:CDS | 30.0% | |
| ATAAATAAAGTGTGTGAGTG+AGG | + | chr1_4:2827171-2827190 | Msa0143770:intron | 30.0% | |
| GTTGTATGAGATGTTACAAA+TGG | + | chr1_4:2827252-2827271 | Msa0143770:intron | 30.0% | |
| ! | TGAGATGTTACAAATGGTTT+TGG | + | chr1_4:2827258-2827277 | Msa0143770:intron | 30.0% |
| !! | TGAGGAAAGATTTTTAAAGG+AGG | + | chr1_4:2827320-2827339 | Msa0143770:intron | 30.0% |
| TAGTTACAACGCTTAAGATT+GGG | - | chr1_4:2827450-2827469 | None:intergenic | 30.0% | |
| TTAGTTACAACGCTTAAGAT+TGG | - | chr1_4:2827451-2827470 | None:intergenic | 30.0% | |
| TTGTAACTAAGAACAACCAA+CGG | + | chr1_4:2827461-2827480 | Msa0143770:intron | 30.0% | |
| ATATTAGGGTCCAATTAGTA+AGG | + | chr1_4:2827593-2827612 | Msa0143770:intron | 30.0% | |
| !! | ACATACATGCTTTAATTTGC+AGG | + | chr1_4:2827656-2827675 | Msa0143770:intron | 30.0% |
| ATGCAAACTCGTTTATTAAG+AGG | + | chr1_4:2827747-2827766 | Msa0143770:CDS | 30.0% | |
| TGCAAACTCGTTTATTAAGA+GGG | + | chr1_4:2827748-2827767 | Msa0143770:CDS | 30.0% | |
| AATATATTCCACATCCTCTA+TGG | + | chr1_4:2827781-2827800 | Msa0143770:CDS | 30.0% | |
| ATATATTCCACATCCTCTAT+GGG | + | chr1_4:2827782-2827801 | Msa0143770:CDS | 30.0% | |
| AATTGTGAAGAAATTGGTGA+AGG | + | chr1_4:2827847-2827866 | Msa0143770:CDS | 30.0% | |
| TTATCTATGAAGACCAATGA+TGG | + | chr1_4:2828010-2828029 | Msa0143770:CDS | 30.0% | |
| ACCATTGCGATAATTATCAT+CGG | - | chr1_4:2828122-2828141 | None:intergenic | 30.0% | |
| TGTATCACTGCAGAAATATT+TGG | + | chr1_4:2828160-2828179 | Msa0143770:intron | 30.0% | |
| ATCGACATCAAACACTAATA+TGG | - | chr1_4:2828225-2828244 | None:intergenic | 30.0% | |
| TCAATATTGTATCTTAGGTG+TGG | + | chr1_4:2828245-2828264 | Msa0143770:intron | 30.0% | |
| TTGGGTCATCTTAAAATTCT+CGG | + | chr1_4:2828478-2828497 | Msa0143770:intron | 30.0% | |
| GGAGATGTTAAATTAAGTGT+TGG | - | chr1_4:2828710-2828729 | None:intergenic | 30.0% | |
| ! | AGAGTTTTACATGATCTGTT+TGG | + | chr1_4:2828802-2828821 | Msa0143770:intron | 30.0% |
| TACATGATCTGTTTGGAAAT+TGG | + | chr1_4:2828809-2828828 | Msa0143770:intron | 30.0% | |
| ! | AGTGAAGTTTGATGAGTTTT+TGG | - | chr1_4:2828882-2828901 | None:intergenic | 30.0% |
| AGACCAACTTTACAAAATTG+AGG | + | chr1_4:2828925-2828944 | Msa0143770:intron | 30.0% | |
| ! | ACTCCTCAATTTTGTAAAGT+TGG | - | chr1_4:2828931-2828950 | None:intergenic | 30.0% |
| !! | GAGTATCGTTCCAATTTTAT+CGG | + | chr1_4:2828947-2828966 | Msa0143770:intron | 30.0% |
| GGTAATCTCAAAACTAAAAG+CGG | - | chr1_4:2829102-2829121 | None:intergenic | 30.0% | |
| !! | AGAGAAGTGCATGAATTTTA+CGG | + | chr1_4:2829126-2829145 | Msa0143770:intron | 30.0% |
| !!! | TTTGTGTTGTTTTTCCTCTT+TGG | - | chr1_4:2829178-2829197 | None:intergenic | 30.0% |
| !! | AAGCTCTAGAAAGAAGAATT+AGG | - | chr1_4:2829231-2829250 | None:intergenic | 30.0% |
| ! | GTTTTTCTACAATATGCGAA+TGG | + | chr1_4:2829270-2829289 | Msa0143770:intron | 30.0% |
| CTGAGGATTATTAATCTTCT+CGG | + | chr1_4:2829298-2829317 | Msa0143770:intron | 30.0% | |
| ! | TCACATGTCATTTCAGAATT+CGG | + | chr1_4:2829633-2829652 | Msa0143770:intron | 30.0% |
| ! | TTATTCCTGATGGATACAAT+TGG | - | chr1_4:2829800-2829819 | None:intergenic | 30.0% |
| AATTGTATCCATCAGGAATA+AGG | + | chr1_4:2829799-2829818 | Msa0143770:intron | 30.0% | |
| TCAATATTTCAAGAGCTACA+CGG | - | chr1_4:2829851-2829870 | None:intergenic | 30.0% | |
| CCTTAAACTCTTGAATTCTT+TGG | - | chr1_4:2829884-2829903 | None:intergenic | 30.0% | |
| CCAAAGAATTCAAGAGTTTA+AGG | + | chr1_4:2829881-2829900 | Msa0143770:CDS | 30.0% | |
| GTTTATAGATGCAATGAGAA+AGG | + | chr1_4:2829971-2829990 | Msa0143770:CDS | 30.0% | |
| ATCATGTATGAGTTCGAAAA+CGG | - | chr1_4:2830075-2830094 | None:intergenic | 30.0% | |
| ATACATGATGCAACTGTAAA+TGG | + | chr1_4:2830086-2830105 | Msa0143770:CDS | 30.0% | |
| AGATGCAAAGAGAAATTCTA+TGG | + | chr1_4:2830222-2830241 | Msa0143770:CDS | 30.0% | |
| AAGAGAAATTCTATGGTTCA+AGG | + | chr1_4:2830229-2830248 | Msa0143770:CDS | 30.0% | |
| TTTCACAATATGTTATAGCG+CGG | - | chr1_4:2830699-2830718 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCTTCCTTACACTT+GGG | - | chr1_4:2830753-2830772 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCTTCCTTACACT+TGG | - | chr1_4:2830754-2830773 | None:intergenic | 30.0% |
| ! | TCTTTTCACTTCTTCAACTT+CGG | + | chr1_4:2831010-2831029 | Msa0143770:CDS | 30.0% |
| ! | CTGAATATGAGATTTGGAAC+AGG | + | chr1_4:2826673-2826692 | Msa0143770:CDS | 35.0% |
| ! | AGATTTGGAACAGGAAGAAT+GGG | + | chr1_4:2826682-2826701 | Msa0143770:CDS | 35.0% |
| TTCATATTGCTAAAGAAGCC+TGG | + | chr1_4:2826766-2826785 | Msa0143770:CDS | 35.0% | |
| TACATACCTTGCTCAATATC+TGG | - | chr1_4:2826834-2826853 | None:intergenic | 35.0% | |
| ! | TAAGTGTCTTTTGTGAGTCA+TGG | + | chr1_4:2826959-2826978 | Msa0143770:intron | 35.0% |
| ATTAAGTCCTGTCTCATAGT+CGG | - | chr1_4:2826991-2827010 | None:intergenic | 35.0% | |
| !! | AAAAGAATTGTGTTGACTCG+TGG | + | chr1_4:2827207-2827226 | Msa0143770:intron | 35.0% |
| !! | AAAGAATTGTGTTGACTCGT+GGG | + | chr1_4:2827208-2827227 | Msa0143770:intron | 35.0% |
| AGTTACAACGCTTAAGATTG+GGG | - | chr1_4:2827449-2827468 | None:intergenic | 35.0% | |
| TGTGCAGCGATTTATATTGA+AGG | - | chr1_4:2827700-2827719 | None:intergenic | 35.0% | |
| TATATTCCACATCCTCTATG+GGG | + | chr1_4:2827783-2827802 | Msa0143770:CDS | 35.0% | |
| CGAGGAAATTGTGAAGAAAT+TGG | + | chr1_4:2827841-2827860 | Msa0143770:CDS | 35.0% | |
| TGAAGAAATTGGTGAAGGAA+GGG | + | chr1_4:2827852-2827871 | Msa0143770:CDS | 35.0% | |
| GTGAAAATGAAAGACAATCG+AGG | + | chr1_4:2827887-2827906 | Msa0143770:CDS | 35.0% | |
| TATAGCGAAGTGTATGACTA+TGG | + | chr1_4:2827955-2827974 | Msa0143770:CDS | 35.0% | |
| TAAGAAAATATCACGGTCAG+AGG | + | chr1_4:2827982-2828001 | Msa0143770:CDS | 35.0% | |
| !! | CATTGGTCTTCATAGATAAC+AGG | - | chr1_4:2828009-2828028 | None:intergenic | 35.0% |
| ! | CGATTCAAAGTGTGATTTGT+GGG | - | chr1_4:2828310-2828329 | None:intergenic | 35.0% |
| CCACAAATCACACTTTGAAT+CGG | + | chr1_4:2828308-2828327 | Msa0143770:CDS | 35.0% | |
| AATTCATGCACTTCTCTTTC+AGG | - | chr1_4:2829123-2829142 | None:intergenic | 35.0% | |
| !! | GAGAAGTGCATGAATTTTAC+GGG | + | chr1_4:2829127-2829146 | Msa0143770:intron | 35.0% |
| TCTTGCAAATATTGCCAAAG+AGG | + | chr1_4:2829161-2829180 | Msa0143770:intron | 35.0% | |
| !! | ATCTTCTCGGTTGTTTCTTT+AGG | + | chr1_4:2829311-2829330 | Msa0143770:intron | 35.0% |
| ! | GTTTCTTTAGGAAGGTTATG+TGG | + | chr1_4:2829323-2829342 | Msa0143770:intron | 35.0% |
| AAGATCACAGATCACAACAA+GGG | - | chr1_4:2829463-2829482 | None:intergenic | 35.0% | |
| AAAGATCACAGATCACAACA+AGG | - | chr1_4:2829464-2829483 | None:intergenic | 35.0% | |
| TCGGTACTATTAAAGTTCTC+TGG | + | chr1_4:2829652-2829671 | Msa0143770:intron | 35.0% | |
| TAATTAATCACAAAGAGGGG+AGG | - | chr1_4:2829756-2829775 | None:intergenic | 35.0% | |
| TAAGGAATCAGAACTTAGAG+AGG | + | chr1_4:2829899-2829918 | Msa0143770:CDS | 35.0% | |
| ! | TTTTATCAATGGCCCATAAG+AGG | - | chr1_4:2830007-2830026 | None:intergenic | 35.0% |
| ATGATGCAACTGTAAATGGA+CGG | + | chr1_4:2830090-2830109 | Msa0143770:CDS | 35.0% | |
| GCTTATATGTTGGAACAAAG+AGG | + | chr1_4:2830308-2830327 | Msa0143770:intron | 35.0% | |
| GAGAAGAGATTAGAGAGTTT+AGG | + | chr1_4:2830369-2830388 | Msa0143770:intron | 35.0% | |
| GTTGGTTGTGAAGTTGTTAT+AGG | - | chr1_4:2830495-2830514 | None:intergenic | 35.0% | |
| TATAGCGCGGTTAAAATTCA+TGG | - | chr1_4:2830686-2830705 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCCTTACACTTG+GGG | - | chr1_4:2830752-2830771 | None:intergenic | 35.0% |
| TTAGGATTCCAATGAAGAGA+AGG | - | chr1_4:2831037-2831056 | None:intergenic | 35.0% | |
| TCTCTTCATTGGAATCCTAA+CGG | + | chr1_4:2831037-2831056 | Msa0143770:CDS | 35.0% | |
| AGAAACCACAGAGAAGAAAA+GGG | - | chr1_4:2831126-2831145 | None:intergenic | 35.0% | |
| TAGAAACCACAGAGAAGAAA+AGG | - | chr1_4:2831127-2831146 | None:intergenic | 35.0% | |
| !! | TTCACTTGCTATGCTCTTAA+AGG | + | chr1_4:2831166-2831185 | Msa0143770:CDS | 35.0% |
| !! | TCACTTGCTATGCTCTTAAA+GGG | + | chr1_4:2831167-2831186 | Msa0143770:CDS | 35.0% |
| ACTTGAAAATCTCAAGGAAG+AGG | - | chr1_4:2831268-2831287 | None:intergenic | 35.0% | |
| CTGTAGACTTGAAAATCTCA+AGG | - | chr1_4:2831274-2831293 | None:intergenic | 35.0% | |
| GTGACCTCTATTCCTGAAAT+TGG | + | chr1_4:2826636-2826655 | Msa0143770:CDS | 40.0% | |
| ! | GAGATTTGGAACAGGAAGAA+TGG | + | chr1_4:2826681-2826700 | Msa0143770:CDS | 40.0% |
| AGTTGCACCCAATTTATTCC+AGG | - | chr1_4:2826787-2826806 | None:intergenic | 40.0% | |
| ACCTTGCTCAATATCTGGAT+CGG | - | chr1_4:2826829-2826848 | None:intergenic | 40.0% | |
| !! | AAGAATTGTGTTGACTCGTG+GGG | + | chr1_4:2827209-2827228 | Msa0143770:intron | 40.0% |
| TAGGTAAGGGAGAAGCAATA+AGG | + | chr1_4:2827363-2827382 | Msa0143770:intron | 40.0% | |
| AAGAACAACCAACGGCATTT+AGG | + | chr1_4:2827469-2827488 | Msa0143770:intron | 40.0% | |
| !! | CATGCTTTAATTTGCAGGTG+TGG | + | chr1_4:2827661-2827680 | Msa0143770:intron | 40.0% |
| CTGCACAAGTATATTGAGAG+CGG | + | chr1_4:2827713-2827732 | Msa0143770:CDS | 40.0% | |
| GTGAAGAAATTGGTGAAGGA+AGG | + | chr1_4:2827851-2827870 | Msa0143770:CDS | 40.0% | |
| CTTCGCTATATTCGTGTTTC+CGG | - | chr1_4:2827945-2827964 | None:intergenic | 40.0% | |
| AACAGGGATTTCACCATCAT+TGG | - | chr1_4:2828026-2828045 | None:intergenic | 40.0% | |
| GCCGATGATAATTATCGCAA+TGG | + | chr1_4:2828118-2828137 | Msa0143770:CDS | 40.0% | |
| ! | CTGCAGAAATATTTGGTTCG+TGG | + | chr1_4:2828167-2828186 | Msa0143770:intron | 40.0% |
| CCGATTCAAAGTGTGATTTG+TGG | - | chr1_4:2828311-2828330 | None:intergenic | 40.0% | |
| TGTGCAACCATTATACGCAT+TGG | + | chr1_4:2828335-2828354 | Msa0143770:CDS | 40.0% | |
| !! | TTTCCAAGTGGTAGTGGATA+TGG | + | chr1_4:2828375-2828394 | Msa0143770:CDS | 40.0% |
| !! | TTCCAAGTGGTAGTGGATAT+GGG | + | chr1_4:2828376-2828395 | Msa0143770:CDS | 40.0% |
| TTACTCCTCAATTGTCCCTT+CGG | - | chr1_4:2828979-2828998 | None:intergenic | 40.0% | |
| !! | AAGCGGAAGTAGATTAGTCT+TGG | - | chr1_4:2829085-2829104 | None:intergenic | 40.0% |
| CAACACAAAGCTTCTTTCGT+AGG | + | chr1_4:2829189-2829208 | Msa0143770:intron | 40.0% | |
| CAAAGCTTCTTTCGTAGGTA+TGG | + | chr1_4:2829194-2829213 | Msa0143770:intron | 40.0% | |
| !! | TCTCGGTTGTTTCTTTAGGA+AGG | + | chr1_4:2829315-2829334 | Msa0143770:intron | 40.0% |
| ! | CTTTAGGAAGGTTATGTGGA+CGG | + | chr1_4:2829327-2829346 | Msa0143770:intron | 40.0% |
| TTTATCGCCAGTAAAGCAGT+TGG | + | chr1_4:2829358-2829377 | Msa0143770:intron | 40.0% | |
| TTATCGCCAGTAAAGCAGTT+GGG | + | chr1_4:2829359-2829378 | Msa0143770:intron | 40.0% | |
| AACTTACCCAACTGCTTTAC+TGG | - | chr1_4:2829368-2829387 | None:intergenic | 40.0% | |
| TCTGGATTACAAGACGTATC+CGG | - | chr1_4:2829511-2829530 | None:intergenic | 40.0% | |
| TCTTGTAATCCAGACCCTAA+GGG | + | chr1_4:2829517-2829536 | Msa0143770:intron | 40.0% | |
| GCTTTGTATTCACACCCTTA+GGG | - | chr1_4:2829534-2829553 | None:intergenic | 40.0% | |
| CACACATATATAACAGGGAC+TGG | - | chr1_4:2829556-2829575 | None:intergenic | 40.0% | |
| ! | TCCTGATGGATACAATTGGA+GGG | - | chr1_4:2829796-2829815 | None:intergenic | 40.0% |
| ! | TTCCTGATGGATACAATTGG+AGG | - | chr1_4:2829797-2829816 | None:intergenic | 40.0% |
| TATTTCAAGAGCTACACGGT+AGG | - | chr1_4:2829847-2829866 | None:intergenic | 40.0% | |
| ATCAGAACTTAGAGAGGCTT+CGG | + | chr1_4:2829905-2829924 | Msa0143770:CDS | 40.0% | |
| ! | GTTCGAAAACGGCTTTTCTA+CGG | - | chr1_4:2830064-2830083 | None:intergenic | 40.0% |
| AATTGCCAAATGCGTCTACA+CGG | - | chr1_4:2830133-2830152 | None:intergenic | 40.0% | |
| TTGCACTTGGCAGGATATTT+AGG | + | chr1_4:2830158-2830177 | Msa0143770:CDS | 40.0% | |
| TGCACTTGGCAGGATATTTA+GGG | + | chr1_4:2830159-2830178 | Msa0143770:CDS | 40.0% | |
| TCTGATCTTGATCGTAGATC+CGG | + | chr1_4:2830188-2830207 | Msa0143770:CDS | 40.0% | |
| ! | GTGAAATTTTGTGAAGGCAG+TGG | + | chr1_4:2830713-2830732 | Msa0143770:intron | 40.0% |
| ! | AAATTTTGTGAAGGCAGTGG+AGG | + | chr1_4:2830716-2830735 | Msa0143770:intron | 40.0% |
| CTTTCTGTAAATAGCTCACG+AGG | - | chr1_4:2830792-2830811 | None:intergenic | 40.0% | |
| GCTATTTACAGAAAGCCACA+AGG | + | chr1_4:2830797-2830816 | Msa0143770:intron | 40.0% | |
| AAATGGGCAAAAGATACAGC+TGG | + | chr1_4:2830840-2830859 | Msa0143770:CDS | 40.0% | |
| ! | AGCTGGTTCATTTACTCTTG+TGG | + | chr1_4:2830857-2830876 | Msa0143770:CDS | 40.0% |
| TGTCTTGATTGTTTCCACCA+GGG | - | chr1_4:2830926-2830945 | None:intergenic | 40.0% | |
| TTGTCTTGATTGTTTCCACC+AGG | - | chr1_4:2830927-2830946 | None:intergenic | 40.0% | |
| GGTGGAAACAATCAAGACAA+TGG | + | chr1_4:2830927-2830946 | Msa0143770:CDS | 40.0% | |
| TCCTTAAGTCATTGCCACTA+AGG | + | chr1_4:2831081-2831100 | Msa0143770:CDS | 40.0% | |
| ACCTTAGTGGCAATGACTTA+AGG | - | chr1_4:2831085-2831104 | None:intergenic | 40.0% | |
| AGTGCGAAAAGTAACCTTAG+TGG | - | chr1_4:2831098-2831117 | None:intergenic | 40.0% | |
| TAGAACGATAACAGGAACAC+TGG | - | chr1_4:2831228-2831247 | None:intergenic | 40.0% | |
| CGCACCAATTTCAGGAATAG+AGG | - | chr1_4:2826643-2826662 | None:intergenic | 45.0% | |
| TTAGAACGCGCACCAATTTC+AGG | - | chr1_4:2826651-2826670 | None:intergenic | 45.0% | |
| TTGGAACAGGAAGAATGGGA+AGG | + | chr1_4:2826686-2826705 | Msa0143770:CDS | 45.0% | |
| GACTAAACCGACTATGAGAC+AGG | + | chr1_4:2826981-2827000 | Msa0143770:intron | 45.0% | |
| !! | AGAATTGTGTTGACTCGTGG+GGG | + | chr1_4:2827210-2827229 | Msa0143770:intron | 45.0% |
| AACCAACGGCATTTAGGCTT+TGG | + | chr1_4:2827475-2827494 | Msa0143770:intron | 45.0% | |
| ACCAACGGCATTTAGGCTTT+GGG | + | chr1_4:2827476-2827495 | Msa0143770:intron | 45.0% | |
| !! | GCTTTAATTTGCAGGTGTGG+TGG | + | chr1_4:2827664-2827683 | Msa0143770:intron | 45.0% |
| AGTATATTGAGAGCGGTGAG+TGG | + | chr1_4:2827720-2827739 | Msa0143770:CDS | 45.0% | |
| AACTACCGCAACGTGAAGAA+CGG | - | chr1_4:2827813-2827832 | None:intergenic | 45.0% | |
| TAGCAGCAGCAAGAAGAACA+GGG | - | chr1_4:2828042-2828061 | None:intergenic | 45.0% | |
| TTAGCAGCAGCAAGAAGAAC+AGG | - | chr1_4:2828043-2828062 | None:intergenic | 45.0% | |
| TGTTCTTCTTGCTGCTGCTA+AGG | + | chr1_4:2828042-2828061 | Msa0143770:CDS | 45.0% | |
| GTTCTTCTTGCTGCTGCTAA+GGG | + | chr1_4:2828043-2828062 | Msa0143770:CDS | 45.0% | |
| TCTTTACCGTTGTACACCGT+TGG | + | chr1_4:2828087-2828106 | Msa0143770:CDS | 45.0% | |
| TGCGATAATTATCATCGGCC+AGG | - | chr1_4:2828117-2828136 | None:intergenic | 45.0% | |
| ! | GAGGCATTTGAGGAAATCGT+TGG | - | chr1_4:2828284-2828303 | None:intergenic | 45.0% |
| ! | AAGTGTGATTTGTGGGCAAG+AGG | - | chr1_4:2828303-2828322 | None:intergenic | 45.0% |
| ATGCGTGCCAATGCGTATAA+TGG | - | chr1_4:2828345-2828364 | None:intergenic | 45.0% | |
| ATGCCTTCTGTGTTTCCAAG+TGG | + | chr1_4:2828363-2828382 | Msa0143770:CDS | 45.0% | |
| CTACCACTTGGAAACACAGA+AGG | - | chr1_4:2828369-2828388 | None:intergenic | 45.0% | |
| TCTGTGTTTCCAAGTGGTAG+TGG | + | chr1_4:2828369-2828388 | Msa0143770:CDS | 45.0% | |
| AACCCATATCCACTACCACT+TGG | - | chr1_4:2828381-2828400 | None:intergenic | 45.0% | |
| TCGGGGACATCCGATAAAAT+TGG | - | chr1_4:2828960-2828979 | None:intergenic | 45.0% | |
| ! | ATTTTATCGGATGTCCCCGA+AGG | + | chr1_4:2828960-2828979 | Msa0143770:intron | 45.0% |
| ! | TTTTATCGGATGTCCCCGAA+GGG | + | chr1_4:2828961-2828980 | Msa0143770:intron | 45.0% |
| TACTCCTCAATTGTCCCTTC+GGG | - | chr1_4:2828978-2828997 | None:intergenic | 45.0% | |
| ATATGCGAATGGCGATTCTG+AGG | + | chr1_4:2829281-2829300 | Msa0143770:intron | 45.0% | |
| GTCTTGTAATCCAGACCCTA+AGG | + | chr1_4:2829516-2829535 | Msa0143770:intron | 45.0% | |
| ! | GGCTTTGTATTCACACCCTT+AGG | - | chr1_4:2829535-2829554 | None:intergenic | 45.0% |
| TCCCTCCAATTGTATCCATC+AGG | + | chr1_4:2829792-2829811 | Msa0143770:intron | 45.0% | |
| ATGTTGCAAGCAGCAAAGCA+TGG | + | chr1_4:2829939-2829958 | Msa0143770:CDS | 45.0% | |
| TGTTGCAAGCAGCAAAGCAT+GGG | + | chr1_4:2829940-2829959 | Msa0143770:CDS | 45.0% | |
| AGGGTAATCCTGACCTCTTA+TGG | + | chr1_4:2829991-2830010 | Msa0143770:CDS | 45.0% | |
| GGGTAATCCTGACCTCTTAT+GGG | + | chr1_4:2829992-2830011 | Msa0143770:CDS | 45.0% | |
| TGCAACTGTAAATGGACGGA+AGG | + | chr1_4:2830094-2830113 | Msa0143770:CDS | 45.0% | |
| AAATGCCGTGTAGACGCATT+TGG | + | chr1_4:2830125-2830144 | Msa0143770:CDS | 45.0% | |
| TGGCAATTCCATGTTGCACT+TGG | + | chr1_4:2830145-2830164 | Msa0143770:CDS | 45.0% | |
| AATTCCATGTTGCACTTGGC+AGG | + | chr1_4:2830149-2830168 | Msa0143770:CDS | 45.0% | |
| ATATCCTGCCAAGTGCAACA+TGG | - | chr1_4:2830156-2830175 | None:intergenic | 45.0% | |
| CTACGATCAAGATCAGAGGA+AGG | - | chr1_4:2830185-2830204 | None:intergenic | 45.0% | |
| GGATCTACGATCAAGATCAG+AGG | - | chr1_4:2830189-2830208 | None:intergenic | 45.0% | |
| TCTCTTTGCATCTGCATAGC+AGG | - | chr1_4:2830215-2830234 | None:intergenic | 45.0% | |
| CATGTATGTATGCGAGTGAG+AGG | - | chr1_4:2830282-2830301 | None:intergenic | 45.0% | |
| CATGCGTGCAGCTTATATGT+TGG | + | chr1_4:2830298-2830317 | Msa0143770:intron | 45.0% | |
| AATTGTGCACCCCAAGTGTA+AGG | + | chr1_4:2830740-2830759 | Msa0143770:intron | 45.0% | |
| GTGATGTCGTGCAAGAACAA+GGG | - | chr1_4:2830957-2830976 | None:intergenic | 45.0% | |
| TGTGATGTCGTGCAAGAACA+AGG | - | chr1_4:2830958-2830977 | None:intergenic | 45.0% | |
| ACTTCGGTCCTTCTCTTCAT+TGG | + | chr1_4:2831026-2831045 | Msa0143770:CDS | 45.0% | |
| ! | CATTGCCCTTTTCTTCTCTG+TGG | + | chr1_4:2831118-2831137 | Msa0143770:CDS | 45.0% |
| CATAGCAAGTGAAGCACAGA+AGG | - | chr1_4:2831159-2831178 | None:intergenic | 45.0% | |
| GACGGAACTAGAACGATAAC+AGG | - | chr1_4:2831236-2831255 | None:intergenic | 45.0% | |
| ATCTTGTGGGACATGGTCTG+TGG | + | chr1_4:2826607-2826626 | Msa0143770:CDS | 50.0% | |
| TCTTGTGGGACATGGTCTGT+GGG | + | chr1_4:2826608-2826627 | Msa0143770:CDS | 50.0% | |
| GCCGATCCAGATATTGAGCA+AGG | + | chr1_4:2826825-2826844 | Msa0143770:CDS | 50.0% | |
| AAACCTCTCCCAAGACGATC+TGG | + | chr1_4:2827281-2827300 | Msa0143770:intron | 50.0% | |
| AAACCAGATCGTCTTGGGAG+AGG | - | chr1_4:2827287-2827306 | None:intergenic | 50.0% | |
| TCTCCCAAGACGATCTGGTT+TGG | + | chr1_4:2827286-2827305 | Msa0143770:intron | 50.0% | |
| ! | CTCCCAAGACGATCTGGTTT+GGG | + | chr1_4:2827287-2827306 | Msa0143770:intron | 50.0% |
| ! | TCCCAAGACGATCTGGTTTG+GGG | + | chr1_4:2827288-2827307 | Msa0143770:intron | 50.0% |
| TCCCCAAACCAGATCGTCTT+GGG | - | chr1_4:2827292-2827311 | None:intergenic | 50.0% | |
| ACCCAAAGCCTAAATGCCGT+TGG | - | chr1_4:2827480-2827499 | None:intergenic | 50.0% | |
| !! | AACGGCATTTAGGCTTTGGG+TGG | + | chr1_4:2827479-2827498 | Msa0143770:intron | 50.0% |
| ATTCCACATCCTCTATGGGG+AGG | + | chr1_4:2827786-2827805 | Msa0143770:CDS | 50.0% | |
| TTCACGTTGCGGTAGTTGCT+GGG | + | chr1_4:2827816-2827835 | Msa0143770:CDS | 50.0% | |
| CAGCTCAGCAACAAGAGCTA+GGG | - | chr1_4:2827921-2827940 | None:intergenic | 50.0% | |
| TCAGCTCAGCAACAAGAGCT+AGG | - | chr1_4:2827922-2827941 | None:intergenic | 50.0% | |
| GGTCTTCCAACGGTGTACAA+CGG | - | chr1_4:2828096-2828115 | None:intergenic | 50.0% | |
| TTGTACACCGTTGGAAGACC+TGG | + | chr1_4:2828096-2828115 | Msa0143770:CDS | 50.0% | |
| !! | TTGTGGGCAAGAGGCATTTG+AGG | - | chr1_4:2828294-2828313 | None:intergenic | 50.0% |
| ACTCCTCAATTGTCCCTTCG+GGG | - | chr1_4:2828977-2828996 | None:intergenic | 50.0% | |
| TCACAACAAGGGTTCGCACA+AGG | - | chr1_4:2829452-2829471 | None:intergenic | 50.0% | |
| TCCGTTTGTGTGCTTTGCAC+CGG | + | chr1_4:2829489-2829508 | Msa0143770:intron | 50.0% | |
| TCCGGTGCAAAGCACACAAA+CGG | - | chr1_4:2829493-2829512 | None:intergenic | 50.0% | |
| GTATTCACACCCTTAGGGTC+TGG | - | chr1_4:2829529-2829548 | None:intergenic | 50.0% | |
| TCAATGGCCCATAAGAGGTC+AGG | - | chr1_4:2830002-2830021 | None:intergenic | 50.0% | |
| TTGCATCTGCATAGCAGGAC+CGG | - | chr1_4:2830210-2830229 | None:intergenic | 50.0% | |
| TACAGAAAGCCACAAGGAGC+TGG | + | chr1_4:2830803-2830822 | Msa0143770:intron | 50.0% | |
| ACAAGGAGCTGGTGAAAGCT+GGG | + | chr1_4:2830814-2830833 | Msa0143770:intron | 50.0% | |
| TGGTGAAAGCTGGGGAGAAA+TGG | + | chr1_4:2830823-2830842 | Msa0143770:CDS | 50.0% | |
| GGTGAAAGCTGGGGAGAAAT+GGG | + | chr1_4:2830824-2830843 | Msa0143770:CDS | 50.0% | |
| TTTCAGCGTAACGAGCCGTT+AGG | - | chr1_4:2831055-2831074 | None:intergenic | 50.0% | |
| ! | AGGAAGAGGCGCAATTGTGA+CGG | - | chr1_4:2831254-2831273 | None:intergenic | 50.0% |
| CTTGTGGGACATGGTCTGTG+GGG | + | chr1_4:2826609-2826628 | Msa0143770:CDS | 55.0% | |
| GTCCCCAAACCAGATCGTCT+TGG | - | chr1_4:2827293-2827312 | None:intergenic | 55.0% | |
| GGTTTGGGGACGAAGCAATG+AGG | + | chr1_4:2827302-2827321 | Msa0143770:intron | 55.0% | |
| AAGAACGGTCCTCCCCATAG+AGG | - | chr1_4:2827798-2827817 | None:intergenic | 55.0% | |
| GAGGACCGTTCTTCACGTTG+CGG | + | chr1_4:2827805-2827824 | Msa0143770:CDS | 55.0% | |
| CTTCACGTTGCGGTAGTTGC+TGG | + | chr1_4:2827815-2827834 | Msa0143770:CDS | 55.0% | |
| GCTCTTGTTGCTGAGCTGAC+CGG | + | chr1_4:2827923-2827942 | Msa0143770:CDS | 55.0% | |
| TCATCGGCCAGGTCTTCCAA+CGG | - | chr1_4:2828106-2828125 | None:intergenic | 55.0% | |
| TGTCCCCGAAGGGACAATTG+AGG | + | chr1_4:2828971-2828990 | Msa0143770:intron | 55.0% | |
| CAGCTTTCACCAGCTCCTTG+TGG | - | chr1_4:2830815-2830834 | None:intergenic | 55.0% | |
| CACAAGGAGCTGGTGAAAGC+TGG | + | chr1_4:2830813-2830832 | Msa0143770:intron | 55.0% | |
| CAAGGAGCTGGTGAAAGCTG+GGG | + | chr1_4:2830815-2830834 | Msa0143770:intron | 55.0% | |
| GGTCCTCCCCATAGAGGATG+TGG | - | chr1_4:2827792-2827811 | None:intergenic | 60.0% | |
| GCTGCAGCTTTCACTGTCCC+TGG | + | chr1_4:2830906-2830925 | Msa0143770:CDS | 60.0% | |
| GCAGCTTTCACTGTCCCTGG+TGG | + | chr1_4:2830909-2830928 | Msa0143770:CDS | 60.0% | |
| TGCGGTAGTTGCTGGGCACG+AGG | + | chr1_4:2827823-2827842 | Msa0143770:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2826603 | 2831361 | 2826603 | ID=Msa0143770;Name=Msa0143770 |
| chr1_4 | mRNA | 2826603 | 2831361 | 2826603 | ID=Msa0143770-mRNA-1;Parent=Msa0143770;Name=Msa0143770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.16|0.14|7|0|610 |
| chr1_4 | exon | 2826603 | 2826846 | 2826603 | ID=Msa0143770-mRNA-1:exon:1257;Parent=Msa0143770-mRNA-1 |
| chr1_4 | exon | 2827678 | 2827908 | 2827678 | ID=Msa0143770-mRNA-1:exon:1258;Parent=Msa0143770-mRNA-1 |
| chr1_4 | exon | 2827918 | 2828139 | 2827918 | ID=Msa0143770-mRNA-1:exon:1259;Parent=Msa0143770-mRNA-1 |
| chr1_4 | exon | 2828262 | 2828423 | 2828262 | ID=Msa0143770-mRNA-1:exon:1260;Parent=Msa0143770-mRNA-1 |
| chr1_4 | exon | 2829814 | 2830062 | 2829814 | ID=Msa0143770-mRNA-1:exon:1261;Parent=Msa0143770-mRNA-1 |
| chr1_4 | exon | 2830072 | 2830250 | 2830072 | ID=Msa0143770-mRNA-1:exon:1262;Parent=Msa0143770-mRNA-1 |
| chr1_4 | exon | 2830819 | 2831361 | 2830819 | ID=Msa0143770-mRNA-1:exon:1263;Parent=Msa0143770-mRNA-1 |
| chr1_4 | CDS | 2826603 | 2826846 | 2826603 | ID=Msa0143770-mRNA-1:cds;Parent=Msa0143770-mRNA-1 |
| chr1_4 | CDS | 2827678 | 2827908 | 2827678 | ID=Msa0143770-mRNA-1:cds;Parent=Msa0143770-mRNA-1 |
| chr1_4 | CDS | 2827918 | 2828139 | 2827918 | ID=Msa0143770-mRNA-1:cds;Parent=Msa0143770-mRNA-1 |
| chr1_4 | CDS | 2828262 | 2828423 | 2828262 | ID=Msa0143770-mRNA-1:cds;Parent=Msa0143770-mRNA-1 |
| chr1_4 | CDS | 2829814 | 2830062 | 2829814 | ID=Msa0143770-mRNA-1:cds;Parent=Msa0143770-mRNA-1 |
| chr1_4 | CDS | 2830072 | 2830250 | 2830072 | ID=Msa0143770-mRNA-1:cds;Parent=Msa0143770-mRNA-1 |
| chr1_4 | CDS | 2830819 | 2831361 | 2830819 | ID=Msa0143770-mRNA-1:cds;Parent=Msa0143770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
