Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070248.t1 | XP_003610112.1 | 100 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 2.80E-43 | 184.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070248.t1 | Q9SUM2 | 87.5 | 88 | 11 | 0 | 1 | 88 | 1 | 88 | 9.4e-40 | 163.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070248.t1 | G7JVF0 | 100.0 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 2.0e-43 | 184.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070248.t1 | MTR_4g128050 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 5.02e-61 | 180 |
MS.gene070248.t1 | MTR_4g080300 | 45.455 | 66 | 36 | 0 | 8 | 73 | 15 | 80 | 1.64e-17 | 70.5 |
MS.gene070248.t1 | MTR_7g114670 | 68.750 | 48 | 15 | 0 | 2 | 49 | 3 | 50 | 5.34e-17 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070248.t1 | AT4G30220 | 87.500 | 88 | 11 | 0 | 1 | 88 | 1 | 88 | 2.32e-53 | 161 |
MS.gene070248.t1 | AT4G30220 | 85.227 | 88 | 13 | 0 | 1 | 88 | 9 | 96 | 4.60e-52 | 158 |
MS.gene070248.t1 | AT2G14285 | 83.607 | 61 | 10 | 0 | 28 | 88 | 1 | 61 | 1.27e-32 | 108 |
MS.gene070248.t1 | AT3G59810 | 44.928 | 69 | 38 | 0 | 8 | 76 | 15 | 83 | 1.32e-17 | 70.9 |
MS.gene070248.t1 | AT3G59810 | 44.928 | 69 | 38 | 0 | 8 | 76 | 15 | 83 | 1.32e-17 | 70.9 |
MS.gene070248.t1 | AT3G59810 | 44.928 | 69 | 38 | 0 | 8 | 76 | 15 | 83 | 1.32e-17 | 70.9 |
MS.gene070248.t1 | AT2G43810 | 45.455 | 66 | 36 | 0 | 8 | 73 | 15 | 80 | 1.39e-17 | 70.9 |
MS.gene070248.t1 | AT2G43810 | 45.455 | 66 | 36 | 0 | 8 | 73 | 15 | 80 | 1.39e-17 | 70.9 |
MS.gene070248.t1 | AT2G43810 | 45.455 | 66 | 36 | 0 | 8 | 73 | 15 | 80 | 1.39e-17 | 70.9 |
Find 15 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTTGAGTTTCACAATAAC+AGG | 0.298303 | 8.2:+6084401 | None:intergenic |
CTGTTATTGTGAAACTCAAA+TGG | 0.394430 | 8.2:-6084400 | MS.gene070248:CDS |
TGATTCCTACATGAACTTGC+AGG | 0.426591 | 8.2:-6084195 | MS.gene070248:intron |
TCTTCGATTTCTTCATCCTC+TGG | 0.426615 | 8.2:+6082392 | None:intergenic |
TGTTATTGTGAAACTCAAAT+GGG | 0.470165 | 8.2:-6084399 | MS.gene070248:CDS |
CTCAATGTACTCTTCAGTGT+TGG | 0.496731 | 8.2:+6084065 | None:intergenic |
TGTGAAACTCAAATGGGGAA+TGG | 0.534967 | 8.2:-6084393 | MS.gene070248:CDS |
AACACTGAAGAGTACATTGA+GGG | 0.587864 | 8.2:-6084063 | MS.gene070248:CDS |
CTACATGCGCGGAGTACCAG+AGG | 0.623589 | 8.2:-6082408 | MS.gene070248:CDS |
TTGTACCTGCAAGTTCATGT+AGG | 0.632824 | 8.2:+6084190 | None:intergenic |
AACAATGTTCTCTACATGCG+CGG | 0.654078 | 8.2:-6082419 | MS.gene070248:CDS |
TGTAGGAATCAACTGAAACA+AGG | 0.659877 | 8.2:+6084207 | None:intergenic |
GTTATTGTGAAACTCAAATG+GGG | 0.661938 | 8.2:-6084398 | MS.gene070248:CDS |
AAATGGGGAATGGAGTACAA+AGG | 0.669721 | 8.2:-6084383 | MS.gene070248:intron |
CAACACTGAAGAGTACATTG+AGG | 0.691161 | 8.2:-6084064 | MS.gene070248:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATAATATTTTTTATTAAA+AGG | - | chr8.2:6084358-6084377 | MS.gene070248:intron | 0.0% |
!! | AATTAGTAACATAATAATAA+AGG | + | chr8.2:6082636-6082655 | None:intergenic | 10.0% |
!! | ATTAGTAACATAATAATAAA+GGG | + | chr8.2:6082635-6082654 | None:intergenic | 10.0% |
!! | AGAAATAACACTATTAAAAG+AGG | + | chr8.2:6084502-6084521 | None:intergenic | 20.0% |
!! | ATTAAAAGGTCTGAATATAT+TGG | - | chr8.2:6084372-6084391 | MS.gene070248:intron | 20.0% |
!! | CATTCAATTAATTATGAATG+TGG | - | chr8.2:6083373-6083392 | MS.gene070248:intron | 20.0% |
!!! | AATCTTAATATTTTTAGTGC+AGG | - | chr8.2:6084285-6084304 | MS.gene070248:intron | 20.0% |
!!! | AATTTGCTTATAATTGACAA+CGG | - | chr8.2:6083447-6083466 | MS.gene070248:intron | 20.0% |
!!! | AGTTTTGTTTATCTATCATT+TGG | - | chr8.2:6083106-6083125 | MS.gene070248:intron | 20.0% |
!!! | ATATCTTTTAGTGATTATGT+GGG | + | chr8.2:6083711-6083730 | None:intergenic | 20.0% |
!!! | TAAGCAAATTTTGACTTTTT+AGG | - | chr8.2:6083348-6083367 | MS.gene070248:intron | 20.0% |
!!! | TTTTATCTTCATGAAAAGTT+TGG | - | chr8.2:6084462-6084481 | MS.gene070248:intron | 20.0% |
! | AAAGTATAGAAGATTCTGAT+CGG | + | chr8.2:6082403-6082422 | None:intergenic | 25.0% |
! | AAATTGTTCAAAAAAGGCTT+GGG | + | chr8.2:6082557-6082576 | None:intergenic | 25.0% |
! | AATCTTCTATACTTTCGATT+AGG | - | chr8.2:6082408-6082427 | MS.gene070248:CDS | 25.0% |
! | ACACAAATCATAGAGAAAAT+TGG | + | chr8.2:6082460-6082479 | None:intergenic | 25.0% |
! | ATCATATAGCATATATCTTC+TGG | + | chr8.2:6083164-6083183 | None:intergenic | 25.0% |
! | ATTCAATTGTCTGTATTTGT+AGG | - | chr8.2:6084543-6084562 | MS.gene070248:intron | 25.0% |
! | CCAGTTAAATTGTTCAAAAA+AGG | + | chr8.2:6082563-6082582 | None:intergenic | 25.0% |
! | GCTAATATAAGCAAAAGAAT+TGG | + | chr8.2:6083269-6083288 | None:intergenic | 25.0% |
! | TAAATTGTTCAAAAAAGGCT+TGG | + | chr8.2:6082558-6082577 | None:intergenic | 25.0% |
! | TAAGGTTTGTAAGATTGTTT+GGG | + | chr8.2:6084027-6084046 | None:intergenic | 25.0% |
! | TCAAATAAGTCAATCCAAAT+AGG | - | chr8.2:6084062-6084081 | MS.gene070248:CDS | 25.0% |
! | TGTTATTGTGAAACTCAAAT+GGG | - | chr8.2:6082589-6082608 | MS.gene070248:intron | 25.0% |
! | TTTAAATTGATGTCGAAACT+GGG | - | chr8.2:6083078-6083097 | MS.gene070248:intron | 25.0% |
!! | CATATCTTTTAGTGATTATG+TGG | + | chr8.2:6083712-6083731 | None:intergenic | 25.0% |
!! | TTAGCTCTTCTAATATGATA+AGG | - | chr8.2:6083634-6083653 | MS.gene070248:intron | 25.0% |
!! | TTTTAAATTGATGTCGAAAC+TGG | - | chr8.2:6083077-6083096 | MS.gene070248:intron | 25.0% |
!!! | CCTTTTTTGAACAATTTAAC+TGG | - | chr8.2:6082560-6082579 | MS.gene070248:intron | 25.0% |
!!! | TCATCTATTTTATTTGCTAC+TGG | - | chr8.2:6082996-6083015 | MS.gene070248:intron | 25.0% |
!!! | TTGTGTTGTTTTTATTTTGC+AGG | - | chr8.2:6082755-6082774 | MS.gene070248:intron | 25.0% |
!!! | TTTTCTCTATGATTTGTGTA+TGG | - | chr8.2:6082461-6082480 | MS.gene070248:intron | 25.0% |
AACAAAGACATAACTAGAAG+TGG | + | chr8.2:6084153-6084172 | None:intergenic | 30.0% | |
ACAAAGACATAACTAGAAGT+GGG | + | chr8.2:6084152-6084171 | None:intergenic | 30.0% | |
ACAATTCTAGATACACTAGT+TGG | - | chr8.2:6082817-6082836 | MS.gene070248:intron | 30.0% | |
ATGCTAATGGTATCATTAAC+GGG | + | chr8.2:6083746-6083765 | None:intergenic | 30.0% | |
ATTATAAACCAACTAGATCG+AGG | + | chr8.2:6083227-6083246 | None:intergenic | 30.0% | |
CAAAGAAGTAGCAAAAAGAA+TGG | + | chr8.2:6082855-6082874 | None:intergenic | 30.0% | |
CTGTTATTGTGAAACTCAAA+TGG | - | chr8.2:6082588-6082607 | MS.gene070248:intron | 30.0% | |
GATGCTAATGGTATCATTAA+CGG | + | chr8.2:6083747-6083766 | None:intergenic | 30.0% | |
GTAAGGTTTGTAAGATTGTT+TGG | + | chr8.2:6084028-6084047 | None:intergenic | 30.0% | |
GTTATTGTGAAACTCAAATG+GGG | - | chr8.2:6082590-6082609 | MS.gene070248:intron | 30.0% | |
TAACAATGTAGCACATTTGT+TGG | + | chr8.2:6083617-6083636 | None:intergenic | 30.0% | |
TACAACACACCATAAATACA+AGG | + | chr8.2:6084339-6084358 | None:intergenic | 30.0% | |
TAGTTATGTCTTTGTTAGCT+TGG | - | chr8.2:6084157-6084176 | MS.gene070248:intron | 30.0% | |
TCAAATCAACAACAAACAAC+AGG | + | chr8.2:6083195-6083214 | None:intergenic | 30.0% | |
TGCTTATAATTGACAACAGA+GGG | + | chr8.2:6083334-6083353 | None:intergenic | 30.0% | |
TTATCCTTGCCTTGTATTTA+TGG | - | chr8.2:6084327-6084346 | MS.gene070248:intron | 30.0% | |
TTGCTTATAATTGACAACAG+AGG | + | chr8.2:6083335-6083354 | None:intergenic | 30.0% | |
! | ACATTGAGGGAAATTTTACT+GGG | - | chr8.2:6082938-6082957 | MS.gene070248:intron | 30.0% |
! | CATTTGAGTTTCACAATAAC+AGG | + | chr8.2:6082590-6082609 | None:intergenic | 30.0% |
! | TACATTGAGGGAAATTTTAC+TGG | - | chr8.2:6082937-6082956 | MS.gene070248:intron | 30.0% |
!! | ACTTAGGAGAGATTTTAATC+AGG | - | chr8.2:6082962-6082981 | MS.gene070248:intron | 30.0% |
!! | CATTCTTTTTGCTACTTCTT+TGG | - | chr8.2:6082853-6082872 | MS.gene070248:intron | 30.0% |
AAAAAAGGCTTGGGATTAAC+GGG | + | chr8.2:6082548-6082567 | None:intergenic | 35.0% | |
AAAATGTCTGACTTTGGCAT+TGG | - | chr8.2:6084417-6084436 | MS.gene070248:CDS | 35.0% | |
AAACCAAGTCGACAATACAA+AGG | - | chr8.2:6083537-6083556 | MS.gene070248:intron | 35.0% | |
AACTCCCCAAATAAACATCA+AGG | - | chr8.2:6084208-6084227 | MS.gene070248:CDS | 35.0% | |
AATGATGCATCAGATGCTAA+TGG | + | chr8.2:6083759-6083778 | None:intergenic | 35.0% | |
ACACCCTTGATGTTTATTTG+GGG | + | chr8.2:6084215-6084234 | None:intergenic | 35.0% | |
ACTCCCCAAATAAACATCAA+GGG | - | chr8.2:6084209-6084228 | MS.gene070248:CDS | 35.0% | |
ATGGACAAAATGTCTGACTT+TGG | - | chr8.2:6084411-6084430 | MS.gene070248:CDS | 35.0% | |
ATGTTGAGAAATCATGTGCT+AGG | + | chr8.2:6083036-6083055 | None:intergenic | 35.0% | |
ATTAAAAGAGGTCACACAGT+CGG | + | chr8.2:6084490-6084509 | None:intergenic | 35.0% | |
CAAAAAAGGCTTGGGATTAA+CGG | + | chr8.2:6082549-6082568 | None:intergenic | 35.0% | |
CAAAGACATAACTAGAAGTG+GGG | + | chr8.2:6084151-6084170 | None:intergenic | 35.0% | |
CACACCCTTGATGTTTATTT+GGG | + | chr8.2:6084216-6084235 | None:intergenic | 35.0% | |
CAGCTGCTAAAACAATACAA+AGG | - | chr8.2:6083497-6083516 | MS.gene070248:intron | 35.0% | |
CGGAAGGAAAAAGATACTTA+CGG | + | chr8.2:6082383-6082402 | None:intergenic | 35.0% | |
GAGAAAATTGGATCGCATTA+AGG | + | chr8.2:6082448-6082467 | None:intergenic | 35.0% | |
GCAAAAAGAATGGTCAAAAC+CGG | + | chr8.2:6082845-6082864 | None:intergenic | 35.0% | |
GGTATCATTAACGGGATATT+GGG | + | chr8.2:6083738-6083757 | None:intergenic | 35.0% | |
TAGCACATGATTTCTCAACA+TGG | - | chr8.2:6083035-6083054 | MS.gene070248:intron | 35.0% | |
TATAGAAGATTCTGATCGGA+AGG | + | chr8.2:6082399-6082418 | None:intergenic | 35.0% | |
TCACACCCTTGATGTTTATT+TGG | + | chr8.2:6084217-6084236 | None:intergenic | 35.0% | |
TCACCGTTAAAGCAATTGAA+GGG | - | chr8.2:6084115-6084134 | MS.gene070248:intron | 35.0% | |
TGAGCTTATCTACTAACGTA+AGG | + | chr8.2:6084045-6084064 | None:intergenic | 35.0% | |
TGCTTATAATTGACAACGGA+GGG | - | chr8.2:6083451-6083470 | MS.gene070248:intron | 35.0% | |
TGGTATCATTAACGGGATAT+TGG | + | chr8.2:6083739-6083758 | None:intergenic | 35.0% | |
TGTAGGAATCAACTGAAACA+AGG | + | chr8.2:6082784-6082803 | None:intergenic | 35.0% | |
TGTTTATCCAAACATGCACT+AGG | + | chr8.2:6083812-6083831 | None:intergenic | 35.0% | |
TTCAATTGCTTTAACGGTGA+AGG | + | chr8.2:6084115-6084134 | None:intergenic | 35.0% | |
TTCACCGTTAAAGCAATTGA+AGG | - | chr8.2:6084114-6084133 | MS.gene070248:intron | 35.0% | |
TTGCTTATAATTGACAACGG+AGG | - | chr8.2:6083450-6083469 | MS.gene070248:intron | 35.0% | |
! | AACACTGAAGAGTACATTGA+GGG | - | chr8.2:6082925-6082944 | MS.gene070248:intron | 35.0% |
! | AATAAACATCAAGGGTGTGA+TGG | - | chr8.2:6084217-6084236 | MS.gene070248:intron | 35.0% |
! | GGAAATTTTACTGGGAACTT+AGG | - | chr8.2:6082946-6082965 | MS.gene070248:intron | 35.0% |
! | TTTCCTTTGTATTGTCGACT+TGG | + | chr8.2:6083543-6083562 | None:intergenic | 35.0% |
AAATGGGGAATGGAGTACAA+AGG | - | chr8.2:6082605-6082624 | MS.gene070248:intron | 40.0% | |
AACAATGTTCTCTACATGCG+CGG | - | chr8.2:6084569-6084588 | MS.gene070248:intron | 40.0% | |
ATAGCGCAGTCTCAATTTAC+AGG | + | chr8.2:6083788-6083807 | None:intergenic | 40.0% | |
CACACCATAAATACAAGGCA+AGG | + | chr8.2:6084334-6084353 | None:intergenic | 40.0% | |
CTCAATGTACTCTTCAGTGT+TGG | + | chr8.2:6082926-6082945 | None:intergenic | 40.0% | |
TCTTCGATTTCTTCATCCTC+TGG | + | chr8.2:6084599-6084618 | None:intergenic | 40.0% | |
TGATTCCTACATGAACTTGC+AGG | - | chr8.2:6082793-6082812 | MS.gene070248:intron | 40.0% | |
TGGCCCTTCAATTGCTTTAA+CGG | + | chr8.2:6084121-6084140 | None:intergenic | 40.0% | |
TGTGAAACTCAAATGGGGAA+TGG | - | chr8.2:6082595-6082614 | MS.gene070248:intron | 40.0% | |
TTGTACCTGCAAGTTCATGT+AGG | + | chr8.2:6082801-6082820 | None:intergenic | 40.0% | |
! | CAACACTGAAGAGTACATTG+AGG | - | chr8.2:6082924-6082943 | MS.gene070248:intron | 40.0% |
!! | AGGAAATGCTTCTGAAGCAA+TGG | - | chr8.2:6083654-6083673 | MS.gene070248:intron | 40.0% |
!! | GGAAATGCTTCTGAAGCAAT+GGG | - | chr8.2:6083655-6083674 | MS.gene070248:intron | 40.0% |
!! | TGGTGTTGTATTTCTGAGCA+TGG | - | chr8.2:6084392-6084411 | MS.gene070248:CDS | 40.0% |
!!! | ACTAGAAGTGGGGTTTTGTT+TGG | + | chr8.2:6084141-6084160 | None:intergenic | 40.0% |
!!! | TGGGATCTTTTAGTTCCATC+TGG | + | chr8.2:6083692-6083711 | None:intergenic | 40.0% |
AAGGAGAAAGCTCTCCTAGA+AGG | + | chr8.2:6084096-6084115 | None:intergenic | 45.0% | |
AGGAGAAAGCTCTCCTAGAA+GGG | + | chr8.2:6084095-6084114 | None:intergenic | 45.0% | |
CGCTATACCTAGTGCATGTT+TGG | - | chr8.2:6083802-6083821 | MS.gene070248:intron | 45.0% | |
CTTGTTGGGGTAATACGACT+TGG | + | chr8.2:6083583-6083602 | None:intergenic | 45.0% | |
TAAAGCGACCTCGATCTAGT+TGG | - | chr8.2:6083216-6083235 | MS.gene070248:intron | 45.0% | |
TCTGTGAACTTCTCTGTAGC+TGG | - | chr8.2:6082900-6082919 | MS.gene070248:intron | 45.0% | |
TGGCTAAGCATGCTCTTGTT+GGG | + | chr8.2:6083597-6083616 | None:intergenic | 45.0% | |
TTGGCTAAGCATGCTCTTGT+TGG | + | chr8.2:6083598-6083617 | None:intergenic | 45.0% | |
! | AGTTCCATCTGGTTTGAGCA+AGG | + | chr8.2:6083681-6083700 | None:intergenic | 45.0% |
! | CTAGATACACTAGTTGGTGC+CGG | - | chr8.2:6082823-6082842 | MS.gene070248:intron | 45.0% |
GGAGAAAGCTCTCCTAGAAG+GGG | + | chr8.2:6084094-6084113 | None:intergenic | 50.0% | |
GGCTAAGCATGCTCTTGTTG+GGG | + | chr8.2:6083596-6083615 | None:intergenic | 50.0% | |
TGGGCCTTGCTCAAACCAGA+TGG | - | chr8.2:6083674-6083693 | MS.gene070248:intron | 55.0% | |
AATAGGCCGCTGCCCCTTCT+AGG | - | chr8.2:6084079-6084098 | MS.gene070248:intron | 60.0% | |
AGAAGGGGCAGCGGCCTATT+TGG | + | chr8.2:6084079-6084098 | None:intergenic | 60.0% | |
AGCTCTCCTAGAAGGGGCAG+CGG | + | chr8.2:6084088-6084107 | None:intergenic | 60.0% | |
! | CTACATGCGCGGAGTACCAG+AGG | - | chr8.2:6084580-6084599 | MS.gene070248:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 6082376 | 6084634 | 6082376 | ID=MS.gene070248 |
chr8.2 | mRNA | 6082376 | 6084634 | 6082376 | ID=MS.gene070248.t1;Parent=MS.gene070248 |
chr8.2 | exon | 6084629 | 6084634 | 6084629 | ID=MS.gene070248.t1.exon1;Parent=MS.gene070248.t1 |
chr8.2 | CDS | 6084629 | 6084634 | 6084629 | ID=cds.MS.gene070248.t1;Parent=MS.gene070248.t1 |
chr8.2 | exon | 6084384 | 6084471 | 6084384 | ID=MS.gene070248.t1.exon2;Parent=MS.gene070248.t1 |
chr8.2 | CDS | 6084384 | 6084471 | 6084384 | ID=cds.MS.gene070248.t1;Parent=MS.gene070248.t1 |
chr8.2 | exon | 6084196 | 6084233 | 6084196 | ID=MS.gene070248.t1.exon3;Parent=MS.gene070248.t1 |
chr8.2 | CDS | 6084196 | 6084233 | 6084196 | ID=cds.MS.gene070248.t1;Parent=MS.gene070248.t1 |
chr8.2 | exon | 6084027 | 6084091 | 6084027 | ID=MS.gene070248.t1.exon4;Parent=MS.gene070248.t1 |
chr8.2 | CDS | 6084027 | 6084091 | 6084027 | ID=cds.MS.gene070248.t1;Parent=MS.gene070248.t1 |
chr8.2 | exon | 6082376 | 6082445 | 6082376 | ID=MS.gene070248.t1.exon5;Parent=MS.gene070248.t1 |
chr8.2 | CDS | 6082376 | 6082445 | 6082376 | ID=cds.MS.gene070248.t1;Parent=MS.gene070248.t1 |
Gene Sequence |
Protein sequence |