Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051630.t1 | XP_003589038.1 | 99.6 | 267 | 1 | 0 | 1 | 267 | 1 | 267 | 3.10E-146 | 527.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051630.t1 | Q9SGW3 | 83.5 | 267 | 44 | 0 | 1 | 267 | 1 | 267 | 1.7e-124 | 446.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051630.t1 | B7FL82 | 99.6 | 267 | 1 | 0 | 1 | 267 | 1 | 267 | 2.2e-146 | 527.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051630 | MS.gene056063 | 0.806665 | 7.37E-50 | -1.69E-46 |
| MS.gene051630 | MS.gene24542 | 0.953059 | 6.30E-111 | -1.69E-46 |
| MS.gene051630 | MS.gene40879 | 0.824476 | 7.91E-54 | -1.69E-46 |
| MS.gene051630 | MS.gene57218 | 0.953252 | 4.12E-111 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051630.t1 | MTR_1g016750 | 99.625 | 267 | 1 | 0 | 1 | 267 | 1 | 267 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051630.t1 | AT1G64520 | 83.521 | 267 | 44 | 0 | 1 | 267 | 1 | 267 | 4.09e-159 | 443 |
| MS.gene051630.t1 | AT5G42040 | 62.921 | 267 | 65 | 2 | 1 | 267 | 1 | 233 | 6.89e-113 | 324 |
Find 67 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAAACTTCTGTGAATT+TGG | 0.038934 | 1.3:+5710896 | None:intergenic |
| CCGTTCTTGATTTCCCATTC+AGG | 0.264023 | 1.3:+5707091 | None:intergenic |
| CACTTGCAGGTGTTACTAAC+AGG | 0.267676 | 1.3:-5709682 | MS.gene051630:intron |
| GGAGTTGGAGCAATCCTTTA+TGG | 0.271340 | 1.3:-5707843 | MS.gene051630:CDS |
| TTCCAAGAGTTCCTGGTCTT+TGG | 0.281998 | 1.3:+5707310 | None:intergenic |
| TGTGTATTTCATGGATCTTT+TGG | 0.284808 | 1.3:-5707765 | MS.gene051630:CDS |
| AAATCTCCTTTCCCAGCTTA+AGG | 0.331927 | 1.3:-5710820 | MS.gene051630:intron |
| GTTAGCTCTTGAACTGCATT+AGG | 0.332972 | 1.3:+5709625 | None:intergenic |
| GGAACTCTTGGAATATATTA+AGG | 0.340067 | 1.3:-5707300 | MS.gene051630:CDS |
| TGCTGAATTCCATACTGAAT+TGG | 0.350776 | 1.3:-5707915 | MS.gene051630:CDS |
| TGAGAAACTTCTGTGAATTT+GGG | 0.351752 | 1.3:+5710897 | None:intergenic |
| CCCTAGCATAACTAAGTGTT+TGG | 0.361635 | 1.3:+5706999 | None:intergenic |
| TAATATATTCCAAGAGTTCC+TGG | 0.370117 | 1.3:+5707303 | None:intergenic |
| TGGGTACTCCTGAGGAGATT+GGG | 0.370608 | 1.3:+5707982 | None:intergenic |
| GTGTTTGGTTGATGAGTTGC+AGG | 0.382114 | 1.3:+5707014 | None:intergenic |
| TGAGACTTCTTGTGCAGAAT+AGG | 0.396052 | 1.3:-5707940 | MS.gene051630:CDS |
| CGTTCTTGATTTCCCATTCA+GGG | 0.400779 | 1.3:+5707092 | None:intergenic |
| CGCCAAAGACCAGGAACTCT+TGG | 0.403956 | 1.3:-5707312 | MS.gene051630:CDS |
| TGAAACATATGTGTATTTCA+TGG | 0.407221 | 1.3:-5707774 | MS.gene051630:CDS |
| AAAGCAATTCCAATTCAGTA+TGG | 0.408550 | 1.3:+5707906 | None:intergenic |
| TTGGGTACTCCTGAGGAGAT+TGG | 0.426130 | 1.3:+5707981 | None:intergenic |
| TACCGTGCATCAGTGTAGTA+AGG | 0.430307 | 1.3:+5708261 | None:intergenic |
| ATTGCTTTCATCCACTGCTC+TGG | 0.436359 | 1.3:-5707891 | MS.gene051630:CDS |
| GTTGTATGCCCCTTCCATAA+AGG | 0.451259 | 1.3:+5707829 | None:intergenic |
| CCTCAGGAGTACCCAATACT+TGG | 0.457349 | 1.3:-5707974 | MS.gene051630:CDS |
| ACAGGTTGAGACCAAGTATT+GGG | 0.478577 | 1.3:+5707963 | None:intergenic |
| GGTTAGAGTGTACCTTAAGC+TGG | 0.480510 | 1.3:+5710808 | None:intergenic |
| TCTGCACAAGAAGTCTCAAC+AGG | 0.487747 | 1.3:+5707945 | None:intergenic |
| ACTTAGTTATGCTAGGGAGT+TGG | 0.495838 | 1.3:-5706993 | MS.gene051630:CDS |
| TATTAAGCATGCCGTGGAGT+TGG | 0.497949 | 1.3:-5707858 | MS.gene051630:CDS |
| GATTTCAGGAGCACCCTGAA+TGG | 0.499374 | 1.3:-5707105 | MS.gene051630:intron |
| ATTTCAGGAGCACCCTGAAT+GGG | 0.504260 | 1.3:-5707104 | MS.gene051630:intron |
| TCGTCTTCCCCAATCTCCTC+AGG | 0.513848 | 1.3:-5707990 | MS.gene051630:CDS |
| AGGGAGGGTATTTCTTTGCA+AGG | 0.516901 | 1.3:+5707034 | None:intergenic |
| TTGAAAGAAATCTCTTTCAA+AGG | 0.524033 | 1.3:+5708290 | None:intergenic |
| TGGTTGATGAGTTGCAGGGA+GGG | 0.525378 | 1.3:+5707019 | None:intergenic |
| GGAGCAATCCTTTATGGAAG+GGG | 0.535947 | 1.3:-5707837 | MS.gene051630:CDS |
| TTGGAGCAATCCTTTATGGA+AGG | 0.551519 | 1.3:-5707839 | MS.gene051630:CDS |
| ATTAGGTGTATCTGCAAACA+AGG | 0.554484 | 1.3:+5709642 | None:intergenic |
| AACAGGTTGAGACCAAGTAT+TGG | 0.562540 | 1.3:+5707962 | None:intergenic |
| GTTAGAGTGTACCTTAAGCT+GGG | 0.574520 | 1.3:+5710809 | None:intergenic |
| TGGAGCAATCCTTTATGGAA+GGG | 0.575444 | 1.3:-5707838 | MS.gene051630:CDS |
| ACGTTCAGAGATGAGATAGC+AGG | 0.577525 | 1.3:-5707395 | MS.gene051630:intron |
| GTTGCTGTTCGCCAAAGACC+AGG | 0.580067 | 1.3:-5707321 | MS.gene051630:CDS |
| GATAGCAGGATGCAGTGAGA+AGG | 0.587670 | 1.3:-5707381 | MS.gene051630:CDS |
| CCAAACACTTAGTTATGCTA+GGG | 0.588753 | 1.3:-5706999 | MS.gene051630:CDS |
| TATCTGCAAACAAGGGTGGA+AGG | 0.590332 | 1.3:+5709650 | None:intergenic |
| GGGTACTCCTGAGGAGATTG+GGG | 0.592535 | 1.3:+5707983 | None:intergenic |
| ACCAAACACTTAGTTATGCT+AGG | 0.593116 | 1.3:-5707000 | MS.gene051630:CDS |
| TCCACGGCATGCTTAATACA+AGG | 0.594862 | 1.3:+5707863 | None:intergenic |
| TTGGTTGATGAGTTGCAGGG+AGG | 0.604694 | 1.3:+5707018 | None:intergenic |
| AGTGTACCTTAAGCTGGGAA+AGG | 0.604789 | 1.3:+5710814 | None:intergenic |
| TGTTTGGTTGATGAGTTGCA+GGG | 0.615391 | 1.3:+5707015 | None:intergenic |
| GGTGTATCTGCAAACAAGGG+TGG | 0.618117 | 1.3:+5709646 | None:intergenic |
| ACAAGGATTCTCCAGAGCAG+TGG | 0.619513 | 1.3:+5707880 | None:intergenic |
| AAAGGATTGCTCCAACTCCA+CGG | 0.630188 | 1.3:+5707847 | None:intergenic |
| GTTATGCTAGGGAGTTGGAG+AGG | 0.631284 | 1.3:-5706988 | MS.gene051630:CDS |
| ACTTGCAGGTGTTACTAACA+GGG | 0.633305 | 1.3:-5709681 | MS.gene051630:intron |
| AACCTTACTACACTGATGCA+CGG | 0.640807 | 1.3:-5708263 | MS.gene051630:intron |
| TCTGTCGAGCACTCAAGACA+CGG | 0.643446 | 1.3:+5707807 | None:intergenic |
| TCCTTGTATTAAGCATGCCG+TGG | 0.644930 | 1.3:-5707864 | MS.gene051630:CDS |
| CCAAGTATTGGGTACTCCTG+AGG | 0.648239 | 1.3:+5707974 | None:intergenic |
| AAATACACATATGTTTCATG+TGG | 0.652663 | 1.3:+5707779 | None:intergenic |
| ACTCTTGGAATATATTAAGG+AGG | 0.657443 | 1.3:-5707297 | MS.gene051630:intron |
| CCTGAATGGGAAATCAAGAA+CGG | 0.657945 | 1.3:-5707091 | MS.gene051630:CDS |
| CTGGGAAAGGAGATTTGAAG+CGG | 0.672348 | 1.3:+5710827 | None:intergenic |
| TTAGGTGTATCTGCAAACAA+GGG | 0.724231 | 1.3:+5709643 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAAAAAAATAAATAGA+TGG | + | chr1.3:5710227-5710246 | None:intergenic | 10.0% |
| !! | ATTTGTATAAAAAAATTAAG+AGG | - | chr1.3:5707232-5707251 | MS.gene051630:intron | 10.0% |
| !! | TATATGTATATTACTAAAAT+AGG | + | chr1.3:5708927-5708946 | None:intergenic | 10.0% |
| !! | TTTGTATAAAAAAATTAAGA+GGG | - | chr1.3:5707233-5707252 | MS.gene051630:intron | 10.0% |
| !!! | AAATTAATTATGTCAATTTT+GGG | - | chr1.3:5707169-5707188 | MS.gene051630:intron | 10.0% |
| !!! | ATAGTTTTTATTTCTAAAAT+TGG | - | chr1.3:5708702-5708721 | MS.gene051630:intron | 10.0% |
| !!! | TAAATTAATTATGTCAATTT+TGG | - | chr1.3:5707168-5707187 | MS.gene051630:intron | 10.0% |
| !!! | TTTATTTTGTATAATTGATA+TGG | + | chr1.3:5709376-5709395 | None:intergenic | 10.0% |
| !! | AATCTTAAATTAAATTAGGT+TGG | - | chr1.3:5709140-5709159 | MS.gene051630:intron | 15.0% |
| !! | AATTATTTCATAATCAATTC+TGG | - | chr1.3:5709072-5709091 | MS.gene051630:intron | 15.0% |
| !! | AGTGAATCTTAAATTAAATT+AGG | - | chr1.3:5709136-5709155 | MS.gene051630:intron | 15.0% |
| !! | ATTACTAATAACACAAAATA+CGG | + | chr1.3:5708859-5708878 | None:intergenic | 15.0% |
| !! | TTGTATAAAAAAATTAAGAG+GGG | - | chr1.3:5707234-5707253 | MS.gene051630:intron | 15.0% |
| !!! | AAGAGTTTTTATACTAAAAT+TGG | - | chr1.3:5709301-5709320 | MS.gene051630:intron | 15.0% |
| !!! | CACTAAAATCTTTTATTTTT+AGG | + | chr1.3:5707697-5707716 | None:intergenic | 15.0% |
| !!! | CTAAAAATAAAAGATTTTAG+TGG | - | chr1.3:5707695-5707714 | MS.gene051630:intron | 15.0% |
| !!! | CTAAAATATGTTTCTTTTAT+AGG | + | chr1.3:5707460-5707479 | None:intergenic | 15.0% |
| !!! | TATTGTAAATGACATTTTAA+TGG | - | chr1.3:5708486-5708505 | MS.gene051630:intron | 15.0% |
| !! | AAATTCTCGACAAATAATTA+TGG | + | chr1.3:5708085-5708104 | None:intergenic | 20.0% |
| !! | AGATATACTAATTATAGAAC+CGG | + | chr1.3:5710754-5710773 | None:intergenic | 20.0% |
| !! | ATATGAGTGAATCTTAAATT+AGG | - | chr1.3:5708460-5708479 | MS.gene051630:intron | 20.0% |
| !! | GAAAGAAAAAGTAAAAATAC+AGG | + | chr1.3:5708369-5708388 | None:intergenic | 20.0% |
| !! | TAATAAACTCAGTTATTGTA+GGG | - | chr1.3:5708040-5708059 | MS.gene051630:intron | 20.0% |
| !! | TGTATAATTGATATGGAAAA+TGG | + | chr1.3:5709369-5709388 | None:intergenic | 20.0% |
| !! | TGTGTTAATTTATGATGTTT+GGG | + | chr1.3:5708972-5708991 | None:intergenic | 20.0% |
| !! | TTAATAAACTCAGTTATTGT+AGG | - | chr1.3:5708039-5708058 | MS.gene051630:intron | 20.0% |
| !! | TTATGGAAAACTAAATGATA+AGG | + | chr1.3:5708068-5708087 | None:intergenic | 20.0% |
| !! | TTGTGTTAATTTATGATGTT+TGG | + | chr1.3:5708973-5708992 | None:intergenic | 20.0% |
| !!! | AAAAGAAACATATTTTAGAG+AGG | - | chr1.3:5707462-5707481 | MS.gene051630:intron | 20.0% |
| !!! | ATTTTTTTTACTTCTGAAGT+TGG | - | chr1.3:5710234-5710253 | MS.gene051630:intron | 20.0% |
| !!! | GATAGATAAATTTTTCTATC+TGG | - | chr1.3:5709205-5709224 | MS.gene051630:intron | 20.0% |
| ! | AAATACACATATGTTTCATG+TGG | + | chr1.3:5710106-5710125 | None:intergenic | 25.0% |
| ! | AACACACAACATTGAAATTA+GGG | + | chr1.3:5707125-5707144 | None:intergenic | 25.0% |
| ! | AATTAATATGATCGAGTCAT+GGG | + | chr1.3:5709415-5709434 | None:intergenic | 25.0% |
| ! | ATAACCTAATGACCTAAATA+AGG | - | chr1.3:5707346-5707365 | MS.gene051630:CDS | 25.0% |
| ! | ATTGAACTCAACTGTTAAAT+TGG | - | chr1.3:5710197-5710216 | MS.gene051630:intron | 25.0% |
| ! | CACTCATATGATATTTGATA+AGG | + | chr1.3:5708449-5708468 | None:intergenic | 25.0% |
| ! | CTACAAGGTAATATACTATA+AGG | + | chr1.3:5709753-5709772 | None:intergenic | 25.0% |
| ! | GATATTCTTGTGAAGTAAAA+TGG | - | chr1.3:5707505-5707524 | MS.gene051630:intron | 25.0% |
| ! | TAATTAATATGATCGAGTCA+TGG | + | chr1.3:5709416-5709435 | None:intergenic | 25.0% |
| ! | TCATATGATATTTGATAAGG+TGG | + | chr1.3:5708446-5708465 | None:intergenic | 25.0% |
| ! | TGAAACATATGTGTATTTCA+TGG | - | chr1.3:5710108-5710127 | MS.gene051630:intron | 25.0% |
| ! | TGTTGAGCTATTGTAATTTA+TGG | - | chr1.3:5709846-5709865 | MS.gene051630:intron | 25.0% |
| ! | TTAAAATAGTACCTAATTGC+TGG | - | chr1.3:5708126-5708145 | MS.gene051630:intron | 25.0% |
| ! | TTATAATAATGGTTGTGCTT+CGG | + | chr1.3:5710382-5710401 | None:intergenic | 25.0% |
| ! | TTGAAAGAAATCTCTTTCAA+AGG | + | chr1.3:5709595-5709614 | None:intergenic | 25.0% |
| !! | AATTTTTACACTAAGGACAA+CGG | + | chr1.3:5709559-5709578 | None:intergenic | 25.0% |
| !! | ATTGTGTACTTGTTAACAAA+GGG | + | chr1.3:5709659-5709678 | None:intergenic | 25.0% |
| !! | CTTCTTGTTGAAAATTTTCA+GGG | - | chr1.3:5709517-5709536 | MS.gene051630:intron | 25.0% |
| !! | CTTGATACTTGTTAGTTATT+GGG | - | chr1.3:5707803-5707822 | MS.gene051630:CDS | 25.0% |
| !! | TATTGTGTACTTGTTAACAA+AGG | + | chr1.3:5709660-5709679 | None:intergenic | 25.0% |
| !! | TCTTCTTGTTGAAAATTTTC+AGG | - | chr1.3:5709516-5709535 | MS.gene051630:intron | 25.0% |
| !! | TCTTGATACTTGTTAGTTAT+TGG | - | chr1.3:5707802-5707821 | MS.gene051630:CDS | 25.0% |
| !! | TGAATATAATTGCGCATTTT+GGG | - | chr1.3:5707554-5707573 | MS.gene051630:intron | 25.0% |
| !! | TTCTTGTTGAAAATTTTCAG+GGG | - | chr1.3:5709518-5709537 | MS.gene051630:intron | 25.0% |
| !!! | AAATAAAAGATTTTAGTGGC+AGG | - | chr1.3:5707699-5707718 | MS.gene051630:intron | 25.0% |
| !!! | AAATTAAATTAGGTTGGAAG+AGG | - | chr1.3:5709146-5709165 | MS.gene051630:intron | 25.0% |
| !!! | TGACAAATACTGTATTTTAG+AGG | - | chr1.3:5709266-5709285 | MS.gene051630:intron | 25.0% |
| !!! | TTAGTATATCTACTGATTTC+AGG | - | chr1.3:5710763-5710782 | MS.gene051630:intron | 25.0% |
| AAAACACCATAGAAACTGAA+TGG | + | chr1.3:5708306-5708325 | None:intergenic | 30.0% | |
| AAACTTTGTCTAACCGTTTA+AGG | + | chr1.3:5707965-5707984 | None:intergenic | 30.0% | |
| AAAGAAACTAGGGTTTAGTA+GGG | + | chr1.3:5707098-5707117 | None:intergenic | 30.0% | |
| AAAGCAATTCCAATTCAGTA+TGG | + | chr1.3:5709979-5709998 | None:intergenic | 30.0% | |
| AACTAGTTAGCAAATTGACA+TGG | + | chr1.3:5710456-5710475 | None:intergenic | 30.0% | |
| ACATAAGTGTTTGTGAGAAA+CGG | - | chr1.3:5707600-5707619 | MS.gene051630:intron | 30.0% | |
| ACTCTTGGAATATATTAAGG+AGG | - | chr1.3:5710585-5710604 | MS.gene051630:intron | 30.0% | |
| AGATAGATAACTGTTCTATC+TGG | - | chr1.3:5708730-5708749 | MS.gene051630:intron | 30.0% | |
| AGCAATAGTTTCCTTTCTAT+TGG | + | chr1.3:5707768-5707787 | None:intergenic | 30.0% | |
| ATCTATCTTTCTTACTACCA+TGG | + | chr1.3:5709192-5709211 | None:intergenic | 30.0% | |
| CAACACACAACATTGAAATT+AGG | + | chr1.3:5707126-5707145 | None:intergenic | 30.0% | |
| CAAGAAAGCAAATAATGAGT+TGG | + | chr1.3:5709828-5709847 | None:intergenic | 30.0% | |
| CTAATGACCTAAATAAGGAA+CGG | - | chr1.3:5707351-5707370 | MS.gene051630:CDS | 30.0% | |
| GAGCTTCAAGGTTATAATAA+TGG | + | chr1.3:5710393-5710412 | None:intergenic | 30.0% | |
| GATAATACTTTCACGTTTCT+TGG | + | chr1.3:5709782-5709801 | None:intergenic | 30.0% | |
| GCAATAGTTTCCTTTCTATT+GGG | + | chr1.3:5707767-5707786 | None:intergenic | 30.0% | |
| GGAAAAACAATATACAACAG+AGG | + | chr1.3:5710421-5710440 | None:intergenic | 30.0% | |
| GGAACTCTTGGAATATATTA+AGG | - | chr1.3:5710582-5710601 | MS.gene051630:intron | 30.0% | |
| GTTTCTTGGTATATACTACA+AGG | + | chr1.3:5709768-5709787 | None:intergenic | 30.0% | |
| TAAGATAATAACTGCTTGTC+AGG | - | chr1.3:5709443-5709462 | MS.gene051630:intron | 30.0% | |
| TAATATATTCCAAGAGTTCC+TGG | + | chr1.3:5710582-5710601 | None:intergenic | 30.0% | |
| TAGTTCCTGCAATGAAAATT+TGG | - | chr1.3:5710356-5710375 | MS.gene051630:intron | 30.0% | |
| TGACAACAATTATTACCTGA+TGG | + | chr1.3:5710149-5710168 | None:intergenic | 30.0% | |
| TGAGAAACTTCTGTGAATTT+GGG | + | chr1.3:5706988-5707007 | None:intergenic | 30.0% | |
| TGTCCTTAGTGTAAAAATTG+AGG | - | chr1.3:5709560-5709579 | MS.gene051630:intron | 30.0% | |
| TTCATTCCATTCAGTTTCTA+TGG | - | chr1.3:5708297-5708316 | MS.gene051630:CDS | 30.0% | |
| TTCCTTTCTATTGGGTATTA+GGG | + | chr1.3:5707759-5707778 | None:intergenic | 30.0% | |
| TTGTGAAGTAAAATGGTTGT+GGG | - | chr1.3:5707512-5707531 | MS.gene051630:intron | 30.0% | |
| TTGTTAGTTATTGGGCTTAT+AGG | - | chr1.3:5707811-5707830 | MS.gene051630:CDS | 30.0% | |
| TTTAAAGACTATAGCCAGTT+TGG | + | chr1.3:5708111-5708130 | None:intergenic | 30.0% | |
| TTTCCTTTCTATTGGGTATT+AGG | + | chr1.3:5707760-5707779 | None:intergenic | 30.0% | |
| TTTCTCACAAACACTTATGT+GGG | + | chr1.3:5707600-5707619 | None:intergenic | 30.0% | |
| ! | AACTGTGTTTTACTCTTGAT+TGG | - | chr1.3:5707265-5707284 | MS.gene051630:intron | 30.0% |
| ! | GATCCTCAATTTTTACACTA+AGG | + | chr1.3:5709566-5709585 | None:intergenic | 30.0% |
| ! | GTGAATATAATTGCGCATTT+TGG | - | chr1.3:5707553-5707572 | MS.gene051630:intron | 30.0% |
| ! | TGTCTATTTTCAAAAGGCAA+AGG | - | chr1.3:5710817-5710836 | MS.gene051630:intron | 30.0% |
| ! | TGTGTATTTCATGGATCTTT+TGG | - | chr1.3:5710117-5710136 | MS.gene051630:intron | 30.0% |
| ! | TGTTAGAGAAATTAGTTTCG+AGG | + | chr1.3:5710287-5710306 | None:intergenic | 30.0% |
| ! | TTCTCAATGTGACTTTTTAG+TGG | - | chr1.3:5708170-5708189 | MS.gene051630:intron | 30.0% |
| ! | TTGTGTACTTGTTAACAAAG+GGG | + | chr1.3:5709658-5709677 | None:intergenic | 30.0% |
| !! | AAGATGGTTTTTCAGAAACT+GGG | - | chr1.3:5707382-5707401 | MS.gene051630:CDS | 30.0% |
| !! | CATTTTTCCGTTCCTTATTT+AGG | + | chr1.3:5707361-5707380 | None:intergenic | 30.0% |
| !! | TAAGATGGTTTTTCAGAAAC+TGG | - | chr1.3:5707381-5707400 | MS.gene051630:CDS | 30.0% |
| !!! | CATGTCTATTGTTTTAGATC+CGG | + | chr1.3:5709710-5709729 | None:intergenic | 30.0% |
| !!! | GACATTTTAATGGATTATCC+TGG | - | chr1.3:5708496-5708515 | MS.gene051630:intron | 30.0% |
| !!! | TTGTGTGTTGCTTTAGTTTT+AGG | - | chr1.3:5707136-5707155 | MS.gene051630:intron | 30.0% |
| AAACTGGGTTTACTCTTGAT+TGG | - | chr1.3:5707397-5707416 | MS.gene051630:intron | 35.0% | |
| AACAGTTGAGTTCAATCATC+AGG | + | chr1.3:5710193-5710212 | None:intergenic | 35.0% | |
| AACCCTAATACCCAATAGAA+AGG | - | chr1.3:5707754-5707773 | MS.gene051630:CDS | 35.0% | |
| AAGGCAATAGTTAAGTGATC+AGG | + | chr1.3:5709734-5709753 | None:intergenic | 35.0% | |
| ACCAAACACTTAGTTATGCT+AGG | - | chr1.3:5710882-5710901 | MS.gene051630:CDS | 35.0% | |
| AGAAAGAATCACCAGCAATT+AGG | + | chr1.3:5708140-5708159 | None:intergenic | 35.0% | |
| AGGAACGGAAAAATGTAAGA+TGG | - | chr1.3:5707366-5707385 | MS.gene051630:CDS | 35.0% | |
| AGGAGAATGAACAAAGAGAA+AGG | + | chr1.3:5708821-5708840 | None:intergenic | 35.0% | |
| ATAAGTGTTTGTGAGAAACG+GGG | - | chr1.3:5707602-5707621 | MS.gene051630:intron | 35.0% | |
| ATTAGGGTAGGAAAGAAACT+AGG | + | chr1.3:5707109-5707128 | None:intergenic | 35.0% | |
| ATTAGGTGTATCTGCAAACA+AGG | + | chr1.3:5708243-5708262 | None:intergenic | 35.0% | |
| CACAACATTGAAATTAGGGT+AGG | + | chr1.3:5707121-5707140 | None:intergenic | 35.0% | |
| CATAAGTGTTTGTGAGAAAC+GGG | - | chr1.3:5707601-5707620 | MS.gene051630:intron | 35.0% | |
| CCAAACACTTAGTTATGCTA+GGG | - | chr1.3:5710883-5710902 | MS.gene051630:CDS | 35.0% | |
| CTAGAAGCTAAATCCTAACT+GGG | + | chr1.3:5707880-5707899 | None:intergenic | 35.0% | |
| CTGAGAAACTTCTGTGAATT+TGG | + | chr1.3:5706989-5707008 | None:intergenic | 35.0% | |
| CTTGTGAAGTAAAATGGTTG+TGG | - | chr1.3:5707511-5707530 | MS.gene051630:intron | 35.0% | |
| GAAAGAAACTAGGGTTTAGT+AGG | + | chr1.3:5707099-5707118 | None:intergenic | 35.0% | |
| GGAGAATGAACAAAGAGAAA+GGG | + | chr1.3:5708820-5708839 | None:intergenic | 35.0% | |
| GGCTTATCAAGTAAAAGCAA+AGG | + | chr1.3:5710700-5710719 | None:intergenic | 35.0% | |
| GTTTCTCACAAACACTTATG+TGG | + | chr1.3:5707601-5707620 | None:intergenic | 35.0% | |
| TAATCTCAGACTGTTGAATC+CGG | - | chr1.3:5709688-5709707 | MS.gene051630:intron | 35.0% | |
| TGATTCTTTGCCTATGAGAA+AGG | - | chr1.3:5707939-5707958 | MS.gene051630:CDS | 35.0% | |
| TGCTGAATTCCATACTGAAT+TGG | - | chr1.3:5709967-5709986 | MS.gene051630:intron | 35.0% | |
| TTAGGGTAGGAAAGAAACTA+GGG | + | chr1.3:5707108-5707127 | None:intergenic | 35.0% | |
| TTAGGTGTATCTGCAAACAA+GGG | + | chr1.3:5708242-5708261 | None:intergenic | 35.0% | |
| TTGACATGGATGTGCAAATA+TGG | + | chr1.3:5710442-5710461 | None:intergenic | 35.0% | |
| TTTCTTACTACCATGGTTTG+AGG | + | chr1.3:5709185-5709204 | None:intergenic | 35.0% | |
| ! | CGGTTCTGTCTATTTTCAAA+AGG | - | chr1.3:5710811-5710830 | MS.gene051630:intron | 35.0% |
| ! | CGTTCCTTATTTAGGTCATT+AGG | + | chr1.3:5707353-5707372 | None:intergenic | 35.0% |
| ! | TAACCTTTCTGTCTGGTTTA+AGG | - | chr1.3:5708622-5708641 | MS.gene051630:intron | 35.0% |
| ! | TGGGTAGTTTGCATCAAAAT+TGG | + | chr1.3:5708953-5708972 | None:intergenic | 35.0% |
| !! | AGGATTTAGCTTCTAGCTTA+TGG | - | chr1.3:5707884-5707903 | MS.gene051630:CDS | 35.0% |
| !! | CATGCTTTGAAGAACAAAAC+AGG | + | chr1.3:5708589-5708608 | None:intergenic | 35.0% |
| !! | CTGTTTTGTTCTTCAAAGCA+TGG | - | chr1.3:5708587-5708606 | MS.gene051630:intron | 35.0% |
| !! | GGATTTAGCTTCTAGCTTAT+GGG | - | chr1.3:5707885-5707904 | MS.gene051630:CDS | 35.0% |
| !! | TACGGATTAGAAAACAATGC+AGG | + | chr1.3:5708841-5708860 | None:intergenic | 35.0% |
| !! | TTGTTTTGTTCCTCAAACCA+TGG | - | chr1.3:5709172-5709191 | MS.gene051630:intron | 35.0% |
| !! | TTTACTTCTGAAGTTGGACT+TGG | - | chr1.3:5710240-5710259 | MS.gene051630:intron | 35.0% |
| AAAAGACCAGAGCAACTGAT+TGG | + | chr1.3:5708796-5708815 | None:intergenic | 40.0% | |
| AAATCTCCTTTCCCAGCTTA+AGG | - | chr1.3:5707062-5707081 | MS.gene051630:CDS | 40.0% | |
| AACCTTACTACACTGATGCA+CGG | - | chr1.3:5709619-5709638 | MS.gene051630:CDS | 40.0% | |
| AATGTCGTGCAAAGAGATTC+AGG | + | chr1.3:5710721-5710740 | None:intergenic | 40.0% | |
| ACTTAGTTATGCTAGGGAGT+TGG | - | chr1.3:5710889-5710908 | MS.gene051630:CDS | 40.0% | |
| AGTTCAATCATCAGGTAGGT+AGG | + | chr1.3:5710185-5710204 | None:intergenic | 40.0% | |
| CCCTAGCATAACTAAGTGTT+TGG | + | chr1.3:5710886-5710905 | None:intergenic | 40.0% | |
| CCTATGAGAAAGGCCTTAAA+CGG | - | chr1.3:5707949-5707968 | MS.gene051630:CDS | 40.0% | |
| CCTGAATGGGAAATCAAGAA+CGG | - | chr1.3:5710791-5710810 | MS.gene051630:intron | 40.0% | |
| CGTTCTTGATTTCCCATTCA+GGG | + | chr1.3:5710793-5710812 | None:intergenic | 40.0% | |
| GCTAGAAGCTAAATCCTAAC+TGG | + | chr1.3:5707881-5707900 | None:intergenic | 40.0% | |
| GGATAGATAACCTTTCTGTC+TGG | - | chr1.3:5708615-5708634 | MS.gene051630:intron | 40.0% | |
| GTTAGAGTGTACCTTAAGCT+GGG | + | chr1.3:5707076-5707095 | None:intergenic | 40.0% | |
| GTTGAGTTCAATCATCAGGT+AGG | + | chr1.3:5710189-5710208 | None:intergenic | 40.0% | |
| TAACTGCTTGTCAGGTGAAT+AGG | - | chr1.3:5709451-5709470 | MS.gene051630:intron | 40.0% | |
| TAAGTGTTTGTGAGAAACGG+GGG | - | chr1.3:5707603-5707622 | MS.gene051630:intron | 40.0% | |
| TACAGGTAAGAAAACAACGC+AGG | + | chr1.3:5708352-5708371 | None:intergenic | 40.0% | |
| TACGGGTAAGAAAACAATGC+AGG | + | chr1.3:5708400-5708419 | None:intergenic | 40.0% | |
| TGAGACTTCTTGTGCAGAAT+AGG | - | chr1.3:5709942-5709961 | MS.gene051630:intron | 40.0% | |
| TGGAGCAATCCTTTATGGAA+GGG | - | chr1.3:5710044-5710063 | MS.gene051630:intron | 40.0% | |
| TGGTTTATACTGACCCAGTT+AGG | - | chr1.3:5707864-5707883 | MS.gene051630:CDS | 40.0% | |
| TTCATTCCAATCAGTTGCTC+TGG | - | chr1.3:5708787-5708806 | MS.gene051630:intron | 40.0% | |
| TTGGAGCAATCCTTTATGGA+AGG | - | chr1.3:5710043-5710062 | MS.gene051630:intron | 40.0% | |
| TTTGTCATGCAGCAAGACAA+AGG | + | chr1.3:5709253-5709272 | None:intergenic | 40.0% | |
| ! | AACAGGTTGAGACCAAGTAT+TGG | + | chr1.3:5709923-5709942 | None:intergenic | 40.0% |
| ! | ACAGGTTGAGACCAAGTATT+GGG | + | chr1.3:5709922-5709941 | None:intergenic | 40.0% |
| ! | ATCTTTTGGCAAAGACCATC+AGG | - | chr1.3:5710131-5710150 | MS.gene051630:intron | 40.0% |
| ! | GTCGAGAATTTTGTCCAAAC+TGG | - | chr1.3:5708094-5708113 | MS.gene051630:intron | 40.0% |
| ! | GTTAGCTCTTGAACTGCATT+AGG | + | chr1.3:5708260-5708279 | None:intergenic | 40.0% |
| ! | TAGTGGCATTTTTCACTTGC+AGG | - | chr1.3:5708187-5708206 | MS.gene051630:intron | 40.0% |
| ! | TTCGGCCAAATTTTCATTGC+AGG | + | chr1.3:5710364-5710383 | None:intergenic | 40.0% |
| !! | ACTTGCAGGTGTTACTAACA+GGG | - | chr1.3:5708201-5708220 | MS.gene051630:intron | 40.0% |
| !! | AGATTTTAGTGGCAGGTTGT+TGG | - | chr1.3:5707706-5707725 | MS.gene051630:intron | 40.0% |
| !! | CACGACATTGTTTTGTTCTC+CGG | - | chr1.3:5710732-5710751 | MS.gene051630:intron | 40.0% |
| !! | CTCTTGATTGGTTGTTTCTG+TGG | - | chr1.3:5707409-5707428 | MS.gene051630:intron | 40.0% |
| !! | GAAGTGTGTGTTTAGTTCTG+CGG | + | chr1.3:5709101-5709120 | None:intergenic | 40.0% |
| !! | GATTTTAGTGGCAGGTTGTT+GGG | - | chr1.3:5707707-5707726 | MS.gene051630:intron | 40.0% |
| !! | TGTTTGGTTGATGAGTTGCA+GGG | + | chr1.3:5710870-5710889 | None:intergenic | 40.0% |
| AAAGGATTGCTCCAACTCCA+CGG | + | chr1.3:5710038-5710057 | None:intergenic | 45.0% | |
| AACGGGGGTTTACTCTTGAT+TGG | - | chr1.3:5707618-5707637 | MS.gene051630:intron | 45.0% | |
| ACGTTCAGAGATGAGATAGC+AGG | - | chr1.3:5710487-5710506 | MS.gene051630:intron | 45.0% | |
| ACTGTTCTATCTGGTTGTGC+TGG | - | chr1.3:5708739-5708758 | MS.gene051630:intron | 45.0% | |
| AGGTTGTTGGGTGGCAATTT+GGG | - | chr1.3:5707719-5707738 | MS.gene051630:intron | 45.0% | |
| AGTGTACCTTAAGCTGGGAA+AGG | + | chr1.3:5707071-5707090 | None:intergenic | 45.0% | |
| ATCACAAAGAGCTCATAGCC+AGG | + | chr1.3:5708517-5708536 | None:intergenic | 45.0% | |
| ATTGCTTTCATCCACTGCTC+TGG | - | chr1.3:5709991-5710010 | MS.gene051630:intron | 45.0% | |
| CCACCTTAAACCAGACAGAA+AGG | + | chr1.3:5708628-5708647 | None:intergenic | 45.0% | |
| CCGTTCTTGATTTCCCATTC+AGG | + | chr1.3:5710794-5710813 | None:intergenic | 45.0% | |
| CTGGGAAAGGAGATTTGAAG+CGG | + | chr1.3:5707058-5707077 | None:intergenic | 45.0% | |
| GATCCACTTCCAACTATGAC+AGG | + | chr1.3:5708567-5708586 | None:intergenic | 45.0% | |
| GCAGCTTGAATTCATAGCTC+TGG | - | chr1.3:5707844-5707863 | MS.gene051630:CDS | 45.0% | |
| GGAGCAATCCTTTATGGAAG+GGG | - | chr1.3:5710045-5710064 | MS.gene051630:intron | 45.0% | |
| GGAGTTGGAGCAATCCTTTA+TGG | - | chr1.3:5710039-5710058 | MS.gene051630:intron | 45.0% | |
| GGTTAGAGTGTACCTTAAGC+TGG | + | chr1.3:5707077-5707096 | None:intergenic | 45.0% | |
| GTTCTTCAAAGCATGGCAGT+AGG | - | chr1.3:5708594-5708613 | MS.gene051630:intron | 45.0% | |
| GTTGTATGCCCCTTCCATAA+AGG | + | chr1.3:5710056-5710075 | None:intergenic | 45.0% | |
| TACCGTGCATCAGTGTAGTA+AGG | + | chr1.3:5709624-5709643 | None:intergenic | 45.0% | |
| TATCTGCAAACAAGGGTGGA+AGG | + | chr1.3:5708235-5708254 | None:intergenic | 45.0% | |
| TATTAAGCATGCCGTGGAGT+TGG | - | chr1.3:5710024-5710043 | MS.gene051630:intron | 45.0% | |
| TCCAACTATGACAGGAGGTA+TGG | + | chr1.3:5708559-5708578 | None:intergenic | 45.0% | |
| TCCACGGCATGCTTAATACA+AGG | + | chr1.3:5710022-5710041 | None:intergenic | 45.0% | |
| TCCATACCTCCTGTCATAGT+TGG | - | chr1.3:5708555-5708574 | MS.gene051630:intron | 45.0% | |
| TCCTTGTATTAAGCATGCCG+TGG | - | chr1.3:5710018-5710037 | MS.gene051630:intron | 45.0% | |
| TCTGCACAAGAAGTCTCAAC+AGG | + | chr1.3:5709940-5709959 | None:intergenic | 45.0% | |
| ! | CCGTTTAAGGCCTTTCTCAT+AGG | + | chr1.3:5707952-5707971 | None:intergenic | 45.0% |
| ! | CCTTTCTGTCTGGTTTAAGG+TGG | - | chr1.3:5708625-5708644 | MS.gene051630:intron | 45.0% |
| ! | TTCCAAGAGTTCCTGGTCTT+TGG | + | chr1.3:5710575-5710594 | None:intergenic | 45.0% |
| !! | AGGGAGGGTATTTCTTTGCA+AGG | + | chr1.3:5710851-5710870 | None:intergenic | 45.0% |
| !! | ATTTCAGGAGCACCCTGAAT+GGG | - | chr1.3:5710778-5710797 | MS.gene051630:intron | 45.0% |
| !! | CACTTGCAGGTGTTACTAAC+AGG | - | chr1.3:5708200-5708219 | MS.gene051630:intron | 45.0% |
| !! | GTGTTTGGTTGATGAGTTGC+AGG | + | chr1.3:5710871-5710890 | None:intergenic | 45.0% |
| !!! | CTTTTATTAAAAAAAAAATA+CGG | + | chr1.3:5708418-5708437 | None:intergenic | 5.0% |
| !!! | TTTTATTAAAAAAAAAATAC+GGG | + | chr1.3:5708417-5708436 | None:intergenic | 5.0% |
| ACAAGGATTCTCCAGAGCAG+TGG | + | chr1.3:5710005-5710024 | None:intergenic | 50.0% | |
| CAGGTTGTTGGGTGGCAATT+TGG | - | chr1.3:5707718-5707737 | MS.gene051630:intron | 50.0% | |
| CCACTTCCAACTATGACAGG+AGG | + | chr1.3:5708564-5708583 | None:intergenic | 50.0% | |
| CCTCCTGTCATAGTTGGAAG+TGG | - | chr1.3:5708561-5708580 | MS.gene051630:intron | 50.0% | |
| GATAGCAGGATGCAGTGAGA+AGG | - | chr1.3:5710501-5710520 | MS.gene051630:intron | 50.0% | |
| GGTGTATCTGCAAACAAGGG+TGG | + | chr1.3:5708239-5708258 | None:intergenic | 50.0% | |
| GTTATGCTAGGGAGTTGGAG+AGG | - | chr1.3:5710894-5710913 | MS.gene051630:CDS | 50.0% | |
| TCTGTCGAGCACTCAAGACA+CGG | + | chr1.3:5710078-5710097 | None:intergenic | 50.0% | |
| TGGGTACTCCTGAGGAGATT+GGG | + | chr1.3:5709903-5709922 | None:intergenic | 50.0% | |
| TTGGGTACTCCTGAGGAGAT+TGG | + | chr1.3:5709904-5709923 | None:intergenic | 50.0% | |
| TTTAGTGGCAGGTTGTTGGG+TGG | - | chr1.3:5707710-5707729 | MS.gene051630:intron | 50.0% | |
| !! | CCAAGTATTGGGTACTCCTG+AGG | + | chr1.3:5709911-5709930 | None:intergenic | 50.0% |
| !! | CCTCAGGAGTACCCAATACT+TGG | - | chr1.3:5709908-5709927 | MS.gene051630:intron | 50.0% |
| !! | GATTTCAGGAGCACCCTGAA+TGG | - | chr1.3:5710777-5710796 | MS.gene051630:intron | 50.0% |
| !! | TGGTTGATGAGTTGCAGGGA+GGG | + | chr1.3:5710866-5710885 | None:intergenic | 50.0% |
| !! | TTGGTTGATGAGTTGCAGGG+AGG | + | chr1.3:5710867-5710886 | None:intergenic | 50.0% |
| CGCCAAAGACCAGGAACTCT+TGG | - | chr1.3:5710570-5710589 | MS.gene051630:intron | 55.0% | |
| GGGTACTCCTGAGGAGATTG+GGG | + | chr1.3:5709902-5709921 | None:intergenic | 55.0% | |
| TCGTCTTCCCCAATCTCCTC+AGG | - | chr1.3:5709892-5709911 | MS.gene051630:intron | 55.0% | |
| ! | ACAGAGGTGTGCGAGCTTCA+AGG | + | chr1.3:5710405-5710424 | None:intergenic | 55.0% |
| ! | GTTGCTGTTCGCCAAAGACC+AGG | - | chr1.3:5710561-5710580 | MS.gene051630:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 5706979 | 5710925 | 5706979 | ID=MS.gene051630 |
| chr1.3 | mRNA | 5706979 | 5710925 | 5706979 | ID=MS.gene051630.t1;Parent=MS.gene051630 |
| chr1.3 | exon | 5710821 | 5710925 | 5710821 | ID=MS.gene051630.t1.exon1;Parent=MS.gene051630.t1 |
| chr1.3 | CDS | 5710821 | 5710925 | 5710821 | ID=cds.MS.gene051630.t1;Parent=MS.gene051630.t1 |
| chr1.3 | exon | 5709617 | 5709695 | 5709617 | ID=MS.gene051630.t1.exon2;Parent=MS.gene051630.t1 |
| chr1.3 | CDS | 5709617 | 5709695 | 5709617 | ID=cds.MS.gene051630.t1;Parent=MS.gene051630.t1 |
| chr1.3 | exon | 5708264 | 5708366 | 5708264 | ID=MS.gene051630.t1.exon3;Parent=MS.gene051630.t1 |
| chr1.3 | CDS | 5708264 | 5708366 | 5708264 | ID=cds.MS.gene051630.t1;Parent=MS.gene051630.t1 |
| chr1.3 | exon | 5707752 | 5708015 | 5707752 | ID=MS.gene051630.t1.exon4;Parent=MS.gene051630.t1 |
| chr1.3 | CDS | 5707752 | 5708015 | 5707752 | ID=cds.MS.gene051630.t1;Parent=MS.gene051630.t1 |
| chr1.3 | exon | 5707298 | 5707409 | 5707298 | ID=MS.gene051630.t1.exon5;Parent=MS.gene051630.t1 |
| chr1.3 | CDS | 5707298 | 5707409 | 5707298 | ID=cds.MS.gene051630.t1;Parent=MS.gene051630.t1 |
| chr1.3 | exon | 5706979 | 5707119 | 5706979 | ID=MS.gene051630.t1.exon6;Parent=MS.gene051630.t1 |
| chr1.3 | CDS | 5706979 | 5707119 | 5706979 | ID=cds.MS.gene051630.t1;Parent=MS.gene051630.t1 |
| Gene Sequence |
| Protein sequence |
