Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009506.t1 | XP_003598326.1 | 94.5 | 381 | 6 | 1 | 1 | 366 | 104 | 484 | 2.50E-210 | 741.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009506.t1 | Q9C9H5 | 71.7 | 378 | 91 | 2 | 1 | 363 | 103 | 479 | 4.9e-159 | 562.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009506.t1 | G7IVD9 | 94.5 | 381 | 6 | 1 | 1 | 366 | 104 | 484 | 1.8e-210 | 741.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009506.t1 | MTR_3g010330 | 94.488 | 381 | 6 | 1 | 1 | 366 | 104 | 484 | 0.0 | 745 |
| MS.gene009506.t1 | MTR_3g080810 | 54.308 | 383 | 155 | 3 | 1 | 364 | 114 | 495 | 1.90e-137 | 400 |
| MS.gene009506.t1 | MTR_1g088190 | 53.665 | 382 | 156 | 4 | 1 | 363 | 100 | 479 | 2.31e-130 | 382 |
| MS.gene009506.t1 | MTR_3g117500 | 51.175 | 383 | 164 | 5 | 4 | 365 | 107 | 487 | 2.56e-127 | 374 |
| MS.gene009506.t1 | MTR_8g104820 | 49.741 | 386 | 172 | 5 | 1 | 365 | 109 | 493 | 1.75e-122 | 362 |
| MS.gene009506.t1 | MTR_4g035955 | 49.337 | 377 | 173 | 4 | 1 | 362 | 93 | 466 | 5.33e-116 | 345 |
| MS.gene009506.t1 | MTR_4g035930 | 48.541 | 377 | 176 | 4 | 1 | 362 | 94 | 467 | 2.31e-115 | 343 |
| MS.gene009506.t1 | MTR_4g035975 | 48.294 | 381 | 174 | 7 | 1 | 362 | 113 | 489 | 1.24e-111 | 335 |
| MS.gene009506.t1 | MTR_5g009970 | 43.386 | 378 | 190 | 6 | 4 | 364 | 24 | 394 | 5.03e-100 | 302 |
| MS.gene009506.t1 | MTR_5g010000 | 45.000 | 380 | 185 | 6 | 4 | 366 | 124 | 496 | 8.63e-100 | 305 |
| MS.gene009506.t1 | MTR_5g009970 | 43.386 | 378 | 190 | 6 | 4 | 364 | 51 | 421 | 2.73e-99 | 301 |
| MS.gene009506.t1 | MTR_5g009970 | 43.386 | 378 | 190 | 6 | 4 | 364 | 125 | 495 | 1.39e-98 | 301 |
| MS.gene009506.t1 | MTR_8g099410 | 41.710 | 386 | 196 | 8 | 4 | 364 | 112 | 493 | 5.26e-89 | 277 |
| MS.gene009506.t1 | MTR_8g099410 | 41.710 | 386 | 196 | 8 | 4 | 364 | 112 | 493 | 6.00e-88 | 278 |
| MS.gene009506.t1 | MTR_5g085730 | 38.918 | 388 | 202 | 8 | 4 | 362 | 115 | 496 | 1.07e-87 | 274 |
| MS.gene009506.t1 | MTR_3g080190 | 40.625 | 384 | 201 | 6 | 4 | 362 | 124 | 505 | 1.70e-87 | 273 |
| MS.gene009506.t1 | MTR_3g105230 | 39.286 | 364 | 198 | 5 | 4 | 352 | 114 | 469 | 5.18e-85 | 266 |
| MS.gene009506.t1 | MTR_5g009970 | 42.470 | 332 | 168 | 5 | 50 | 364 | 1 | 326 | 1.06e-82 | 255 |
| MS.gene009506.t1 | MTR_0393s0050 | 87.143 | 140 | 3 | 1 | 221 | 345 | 20 | 159 | 5.45e-82 | 248 |
| MS.gene009506.t1 | MTR_5g093590 | 40.369 | 379 | 198 | 7 | 8 | 360 | 122 | 498 | 2.45e-81 | 257 |
| MS.gene009506.t1 | MTR_3g023740 | 40.800 | 375 | 199 | 5 | 4 | 363 | 114 | 480 | 3.52e-81 | 256 |
| MS.gene009506.t1 | MTR_4g074960 | 41.775 | 383 | 192 | 9 | 4 | 360 | 113 | 490 | 8.28e-79 | 253 |
| MS.gene009506.t1 | MTR_1g037340 | 40.897 | 379 | 200 | 7 | 4 | 363 | 109 | 482 | 9.72e-79 | 249 |
| MS.gene009506.t1 | MTR_3g113720 | 37.922 | 385 | 203 | 9 | 4 | 360 | 140 | 516 | 2.37e-69 | 226 |
| MS.gene009506.t1 | MTR_8g075990 | 39.481 | 385 | 197 | 11 | 4 | 360 | 146 | 522 | 7.56e-66 | 218 |
| MS.gene009506.t1 | MTR_1g088190 | 53.333 | 225 | 100 | 2 | 1 | 221 | 100 | 323 | 1.59e-65 | 211 |
| MS.gene009506.t1 | MTR_7g108925 | 51.899 | 158 | 60 | 2 | 221 | 363 | 43 | 199 | 1.24e-50 | 169 |
| MS.gene009506.t1 | MTR_2g028480 | 37.101 | 407 | 197 | 17 | 4 | 365 | 200 | 592 | 3.49e-47 | 169 |
| MS.gene009506.t1 | MTR_3g082440 | 35.000 | 400 | 203 | 18 | 4 | 359 | 202 | 588 | 1.07e-44 | 162 |
| MS.gene009506.t1 | MTR_3g090540 | 32.338 | 402 | 214 | 16 | 4 | 359 | 191 | 580 | 2.50e-42 | 155 |
| MS.gene009506.t1 | MTR_1g037320 | 47.857 | 140 | 70 | 2 | 4 | 143 | 24 | 160 | 1.23e-23 | 99.4 |
| MS.gene009506.t1 | MTR_1g037320 | 35.772 | 123 | 63 | 2 | 253 | 360 | 168 | 289 | 3.91e-15 | 75.5 |
| MS.gene009506.t1 | MTR_4g128810 | 27.686 | 242 | 130 | 7 | 135 | 359 | 117 | 330 | 1.23e-15 | 77.8 |
| MS.gene009506.t1 | MTR_7g108920 | 50.847 | 59 | 25 | 1 | 131 | 185 | 86 | 144 | 6.11e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009506.t1 | AT1G71380 | 71.504 | 379 | 92 | 2 | 1 | 364 | 103 | 480 | 0.0 | 547 |
| MS.gene009506.t1 | AT1G22880 | 70.000 | 380 | 98 | 2 | 1 | 365 | 103 | 481 | 0.0 | 535 |
| MS.gene009506.t1 | AT1G22880 | 70.000 | 380 | 98 | 2 | 1 | 365 | 19 | 397 | 0.0 | 535 |
| MS.gene009506.t1 | AT4G02290 | 56.283 | 382 | 146 | 4 | 1 | 363 | 19 | 398 | 1.37e-143 | 413 |
| MS.gene009506.t1 | AT4G02290 | 56.283 | 382 | 146 | 4 | 1 | 363 | 131 | 510 | 7.53e-142 | 412 |
| MS.gene009506.t1 | AT1G02800 | 56.021 | 382 | 145 | 5 | 1 | 363 | 122 | 499 | 2.14e-138 | 403 |
| MS.gene009506.t1 | AT1G70710 | 51.169 | 385 | 167 | 4 | 1 | 366 | 107 | 489 | 4.33e-130 | 382 |
| MS.gene009506.t1 | AT1G23210 | 49.479 | 384 | 173 | 4 | 1 | 365 | 107 | 488 | 1.68e-123 | 365 |
| MS.gene009506.t1 | AT4G39010 | 47.520 | 383 | 179 | 4 | 4 | 365 | 112 | 493 | 6.61e-120 | 356 |
| MS.gene009506.t1 | AT1G22880 | 76.471 | 221 | 52 | 0 | 1 | 221 | 103 | 323 | 1.84e-116 | 342 |
| MS.gene009506.t1 | AT4G39000 | 44.297 | 377 | 188 | 4 | 10 | 365 | 114 | 489 | 1.36e-100 | 306 |
| MS.gene009506.t1 | AT4G23560 | 45.989 | 374 | 177 | 7 | 4 | 360 | 107 | 472 | 3.35e-95 | 292 |
| MS.gene009506.t1 | AT4G09740 | 45.333 | 375 | 178 | 8 | 4 | 360 | 107 | 472 | 3.72e-92 | 284 |
| MS.gene009506.t1 | AT4G38990 | 40.816 | 392 | 204 | 6 | 1 | 365 | 102 | 492 | 2.01e-89 | 278 |
| MS.gene009506.t1 | AT2G32990 | 41.406 | 384 | 194 | 8 | 4 | 360 | 123 | 502 | 2.59e-89 | 278 |
| MS.gene009506.t1 | AT4G39010 | 47.101 | 276 | 140 | 2 | 4 | 273 | 112 | 387 | 4.83e-89 | 273 |
| MS.gene009506.t1 | AT4G11050 | 41.361 | 382 | 195 | 9 | 4 | 360 | 110 | 487 | 4.62e-87 | 273 |
| MS.gene009506.t1 | AT4G11050 | 41.361 | 382 | 195 | 9 | 4 | 360 | 110 | 487 | 2.08e-86 | 273 |
| MS.gene009506.t1 | AT4G11050 | 41.361 | 382 | 195 | 9 | 4 | 360 | 110 | 487 | 2.23e-86 | 273 |
| MS.gene009506.t1 | AT1G64390 | 42.400 | 375 | 187 | 8 | 11 | 360 | 116 | 486 | 3.13e-86 | 273 |
| MS.gene009506.t1 | AT3G43860 | 41.489 | 376 | 197 | 5 | 4 | 364 | 118 | 485 | 2.39e-85 | 267 |
| MS.gene009506.t1 | AT3G43860 | 41.489 | 376 | 197 | 5 | 4 | 364 | 118 | 485 | 2.39e-85 | 267 |
| MS.gene009506.t1 | AT2G44540 | 40.108 | 369 | 198 | 7 | 11 | 360 | 124 | 488 | 2.97e-76 | 243 |
| MS.gene009506.t1 | AT2G44550 | 39.623 | 371 | 202 | 6 | 8 | 360 | 121 | 487 | 7.67e-76 | 243 |
| MS.gene009506.t1 | AT1G75680 | 41.979 | 374 | 185 | 9 | 4 | 353 | 140 | 505 | 1.62e-75 | 243 |
| MS.gene009506.t1 | AT2G44570 | 40.107 | 374 | 200 | 8 | 10 | 363 | 123 | 492 | 1.88e-75 | 241 |
| MS.gene009506.t1 | AT2G44560 | 40.369 | 379 | 203 | 7 | 4 | 363 | 117 | 491 | 6.25e-75 | 240 |
| MS.gene009506.t1 | AT1G48930 | 41.623 | 382 | 194 | 7 | 4 | 360 | 114 | 491 | 1.41e-74 | 243 |
| MS.gene009506.t1 | AT1G19940 | 38.727 | 377 | 199 | 9 | 5 | 357 | 132 | 500 | 4.46e-73 | 236 |
| MS.gene009506.t1 | AT1G19940 | 38.727 | 377 | 199 | 9 | 5 | 357 | 132 | 500 | 4.46e-73 | 236 |
| MS.gene009506.t1 | AT1G19940 | 39.427 | 279 | 157 | 6 | 5 | 274 | 132 | 407 | 1.23e-52 | 180 |
| MS.gene009506.t1 | AT2G44570 | 39.576 | 283 | 161 | 8 | 10 | 286 | 123 | 401 | 3.41e-47 | 165 |
| MS.gene009506.t1 | AT4G38990 | 38.132 | 257 | 131 | 3 | 1 | 252 | 102 | 335 | 5.45e-47 | 163 |
| MS.gene009506.t1 | AT4G24260 | 35.644 | 404 | 205 | 15 | 4 | 364 | 197 | 588 | 5.76e-46 | 166 |
| MS.gene009506.t1 | AT5G49720 | 36.543 | 405 | 201 | 15 | 4 | 364 | 196 | 588 | 4.70e-45 | 164 |
| MS.gene009506.t1 | AT1G65610 | 33.165 | 395 | 209 | 18 | 9 | 360 | 206 | 588 | 4.45e-39 | 147 |
| MS.gene009506.t1 | AT4G24260 | 36.333 | 300 | 154 | 13 | 4 | 274 | 197 | 488 | 4.63e-26 | 109 |
| MS.gene009506.t1 | AT4G24260 | 37.991 | 229 | 112 | 9 | 4 | 207 | 197 | 420 | 1.33e-23 | 102 |
Find 0 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAAATTTCAAATCAATA+TGG | - | 21496:68471-68490 | MS.gene009506:intron | 15.0% |
| !! | ACTATAAATATAATAGTTGA+TGG | + | 21496:68401-68420 | None:intergenic | 15.0% |
| !!! | AAAATTTGTTGTAAAATTTC+AGG | - | 21496:68773-68792 | MS.gene009506:CDS | 15.0% |
| !!! | ATAAAATCAATTTTAAACAG+AGG | - | 21496:67854-67873 | MS.gene009506:intron | 15.0% |
| !!! | TAAAATCAATTTTAAACAGA+GGG | - | 21496:67855-67874 | MS.gene009506:intron | 15.0% |
| !!! | TATAGTTAAATATCTAGTTT+TGG | - | 21496:67719-67738 | MS.gene009506:CDS | 15.0% |
| !! | AAAGTTTAGACAAAACAAAT+TGG | + | 21496:68176-68195 | None:intergenic | 20.0% |
| !!! | AACAAAAGTTTAGAATAAGT+TGG | + | 21496:67523-67542 | None:intergenic | 20.0% |
| !!! | AACAAATTTTATCAACAAAG+AGG | + | 21496:68763-68782 | None:intergenic | 20.0% |
| ! | AATAGGCATTATTTATCTTC+AGG | - | 21496:67969-67988 | MS.gene009506:intron | 25.0% |
| ! | ATAAGAACTTTGATCAGTAT+AGG | - | 21496:68260-68279 | MS.gene009506:CDS | 25.0% |
| ! | ATGAAATCATTCTCTATTCT+TGG | + | 21496:68437-68456 | None:intergenic | 25.0% |
| ! | TCTCTCTAATAGTAAGAAAT+AGG | + | 21496:67921-67940 | None:intergenic | 25.0% |
| ! | TGATTCATTGAATGGAAAAA+CGG | + | 21496:68948-68967 | None:intergenic | 25.0% |
| ! | TGCTGTTAAATACTACAATT+TGG | - | 21496:68035-68054 | MS.gene009506:CDS | 25.0% |
| !! | CTTATTCTAAACTTTTGTTG+AGG | - | 21496:67524-67543 | MS.gene009506:intron | 25.0% |
| !! | GGCTTATAGAGTATTATAAA+GGG | - | 21496:68492-68511 | MS.gene009506:intron | 25.0% |
| !! | TGGCTTATAGAGTATTATAA+AGG | - | 21496:68491-68510 | MS.gene009506:intron | 25.0% |
| !! | TTTCAGGTAGACTATATATT+AGG | - | 21496:68789-68808 | MS.gene009506:CDS | 25.0% |
| !!! | TTTTGGTAGTATCACTATTA+GGG | - | 21496:67736-67755 | MS.gene009506:CDS | 25.0% |
| AAATGTTGATCACAAGTGTT+GGG | - | 21496:67369-67388 | MS.gene009506:CDS | 30.0% | |
| ATTGCTTGAATTAATGTGCA+GGG | - | 21496:68528-68547 | MS.gene009506:intron | 30.0% | |
| CCAGAATATGAGCAATAAAA+TGG | + | 21496:67625-67644 | None:intergenic | 30.0% | |
| GAATCAGAACCCTAATATAT+TGG | - | 21496:68962-68981 | MS.gene009506:CDS | 30.0% | |
| TACAACCTATTCCAAGTATA+TGG | - | 21496:68613-68632 | MS.gene009506:intron | 30.0% | |
| TATGTATCTTCAAACAATCC+CGG | - | 21496:67430-67449 | MS.gene009506:CDS | 30.0% | |
| TATTGCTTGAATTAATGTGC+AGG | - | 21496:68527-68546 | MS.gene009506:intron | 30.0% | |
| TCTACTTGTATCGTTCTAAT+AGG | - | 21496:67952-67971 | MS.gene009506:intron | 30.0% | |
| ! | CCATTTTATTGCTCATATTC+TGG | - | 21496:67622-67641 | MS.gene009506:intron | 30.0% |
| ! | TTGGTTGTTAAGTTTGAGAT+CGG | - | 21496:67811-67830 | MS.gene009506:CDS | 30.0% |
| ! | TTTGGTAGTATCACTATTAG+GGG | - | 21496:67737-67756 | MS.gene009506:CDS | 30.0% |
| !! | GTTTTGGTAGTATCACTATT+AGG | - | 21496:67735-67754 | MS.gene009506:CDS | 30.0% |
| ACAAAGCACACATTTAACTG+TGG | - | 21496:68641-68660 | MS.gene009506:intron | 35.0% | |
| ACCATATAGGACATTCTAAG+TGG | + | 21496:68822-68841 | None:intergenic | 35.0% | |
| ATCTTCAGGATGAACTATTG+TGG | - | 21496:67983-68002 | MS.gene009506:intron | 35.0% | |
| ATGGCTCCAACCAATATATT+AGG | + | 21496:68975-68994 | None:intergenic | 35.0% | |
| ATGTCCTATATGGTAGGTTA+TGG | - | 21496:68828-68847 | MS.gene009506:CDS | 35.0% | |
| CAAATGTTGATCACAAGTGT+TGG | - | 21496:67368-67387 | MS.gene009506:CDS | 35.0% | |
| CAACACTTGTGATCAACATT+TGG | + | 21496:67370-67389 | None:intergenic | 35.0% | |
| CAGAACCCTAATATATTGGT+TGG | - | 21496:68966-68985 | MS.gene009506:CDS | 35.0% | |
| CTTAGAATGTCCTATATGGT+AGG | - | 21496:68822-68841 | MS.gene009506:CDS | 35.0% | |
| GTATACTGTGTAGTTGAAGA+GGG | + | 21496:68328-68347 | None:intergenic | 35.0% | |
| TACAATTTGGCCAAGTCTTT+GGG | - | 21496:68048-68067 | MS.gene009506:CDS | 35.0% | |
| TCAACTACACAGTATACACA+AGG | - | 21496:68331-68350 | MS.gene009506:CDS | 35.0% | |
| TCCACTTAGAATGTCCTATA+TGG | - | 21496:68818-68837 | MS.gene009506:CDS | 35.0% | |
| TCTTCAGGATGAACTATTGT+GGG | - | 21496:67984-68003 | MS.gene009506:intron | 35.0% | |
| TGAATCCTCTTGGGAAAATA+TGG | + | 21496:68855-68874 | None:intergenic | 35.0% | |
| TGGCTCCAACCAATATATTA+GGG | + | 21496:68974-68993 | None:intergenic | 35.0% | |
| TGTATACTGTGTAGTTGAAG+AGG | + | 21496:68329-68348 | None:intergenic | 35.0% | |
| TTGCTCATATTCTGGATTCA+AGG | - | 21496:67630-67649 | MS.gene009506:intron | 35.0% | |
| TTGCTTGAATTAATGTGCAG+GGG | - | 21496:68529-68548 | MS.gene009506:intron | 35.0% | |
| ! | TAGGGTTCTGATTCATTGAA+TGG | + | 21496:68956-68975 | None:intergenic | 35.0% |
| AAATGTGCAACATCAACACC+TGG | - | 21496:67319-67338 | MS.gene009506:CDS | 40.0% | |
| AAGCACACATTTAACTGTGG+TGG | - | 21496:68644-68663 | MS.gene009506:intron | 40.0% | |
| ACATACTGAAGATTGCTTGC+AGG | + | 21496:68572-68591 | None:intergenic | 40.0% | |
| ACATTTGAGGAGATAGTCTG+TGG | + | 21496:67305-67324 | None:intergenic | 40.0% | |
| AGCTGCCATATACTTGGAAT+AGG | + | 21496:68621-68640 | None:intergenic | 40.0% | |
| AGCTGGGATAACAAATATGC+TGG | - | 21496:68096-68115 | MS.gene009506:CDS | 40.0% | |
| ATCAACCTGATATCTTCAGC+TGG | - | 21496:68079-68098 | MS.gene009506:CDS | 40.0% | |
| CAGCAACTTACATCAATGGT+GGG | - | 21496:69060-69079 | MS.gene009506:CDS | 40.0% | |
| CCAATACTCGGATTCTTACT+CGG | - | 21496:67692-67711 | MS.gene009506:CDS | 40.0% | |
| CTAACAGTGTCCATATCTTC+TGG | + | 21496:67400-67419 | None:intergenic | 40.0% | |
| CTACAATTTGGCCAAGTCTT+TGG | - | 21496:68047-68066 | MS.gene009506:CDS | 40.0% | |
| CTTCAGGATGAACTATTGTG+GGG | - | 21496:67985-68004 | MS.gene009506:intron | 40.0% | |
| CTTTGTAGCTGCCATATACT+TGG | + | 21496:68627-68646 | None:intergenic | 40.0% | |
| GAACCAGCAACTTACATCAA+TGG | - | 21496:69056-69075 | MS.gene009506:CDS | 40.0% | |
| GCTCTTGCTTCTTTCATTTG+TGG | + | 21496:67268-67287 | None:intergenic | 40.0% | |
| GGGTCTGGATTATCTAATGT+AGG | - | 21496:67757-67776 | MS.gene009506:CDS | 40.0% | |
| GTAGTTGAAGAGGGTGAATT+GGG | + | 21496:68319-68338 | None:intergenic | 40.0% | |
| TAGTATCACTATTAGGGGTC+TGG | - | 21496:67742-67761 | MS.gene009506:CDS | 40.0% | |
| TCAACCTGATATCTTCAGCT+GGG | - | 21496:68080-68099 | MS.gene009506:CDS | 40.0% | |
| TCAGTTCATCCACAGACAAT+AGG | - | 21496:68903-68922 | MS.gene009506:CDS | 40.0% | |
| TGCTTGAATTAATGTGCAGG+GGG | - | 21496:68530-68549 | MS.gene009506:intron | 40.0% | |
| TGGACCATAACCTACCATAT+AGG | + | 21496:68835-68854 | None:intergenic | 40.0% | |
| TGTAGTTGAAGAGGGTGAAT+TGG | + | 21496:68320-68339 | None:intergenic | 40.0% | |
| TTATCCCAGCTGAAGATATC+AGG | + | 21496:68087-68106 | None:intergenic | 40.0% | |
| TTCAACTTACCCTTGAGAGA+AGG | + | 21496:68131-68150 | None:intergenic | 40.0% | |
| TTGGGAAAGACCAGAAGATA+TGG | - | 21496:67387-67406 | MS.gene009506:CDS | 40.0% | |
| TTTGTTGAGGACTGCACAAA+AGG | - | 21496:67537-67556 | MS.gene009506:intron | 40.0% | |
| ! | ATATTGGTTGGAGCCATAGT+TGG | - | 21496:68978-68997 | MS.gene009506:CDS | 40.0% |
| ! | ATGGTCCATATTTTCCCAAG+AGG | - | 21496:68847-68866 | MS.gene009506:CDS | 40.0% |
| ! | CAGTTTGCTTTGCAGTATCA+AGG | - | 21496:67565-67584 | MS.gene009506:intron | 40.0% |
| ! | CTGTGTGATACAGTTTTTCG+AGG | - | 21496:67892-67911 | MS.gene009506:intron | 40.0% |
| ! | GCAACAGTTCTCAAGGTATT+TGG | + | 21496:68683-68702 | None:intergenic | 40.0% |
| ! | GTGTTGATGTTGCACATTTG+AGG | + | 21496:67318-67337 | None:intergenic | 40.0% |
| ! | TACATCAATGGTGGGATTGT+TGG | - | 21496:69068-69087 | MS.gene009506:CDS | 40.0% |
| ! | TCTTTTCGCAACAGTTCTCA+AGG | + | 21496:68690-68709 | None:intergenic | 40.0% |
| ! | TGTGGATGAACTGATAGTGA+AGG | + | 21496:68897-68916 | None:intergenic | 40.0% |
| ! | TTACACGTAGCAGACAGTTT+TGG | - | 21496:67792-67811 | MS.gene009506:CDS | 40.0% |
| AAGGCAATGAAGATCCTCTG+TGG | + | 21496:68878-68897 | None:intergenic | 45.0% | |
| ACACCAACATAGAGTCTTCC+AGG | + | 21496:67340-67359 | None:intergenic | 45.0% | |
| ACACCTGGAAGACTCTATGT+TGG | - | 21496:67334-67353 | MS.gene009506:CDS | 45.0% | |
| ATCATCAGCTCCCAAAGACT+TGG | + | 21496:68061-68080 | None:intergenic | 45.0% | |
| CAGACAATAGGATGTGATGG+AGG | - | 21496:68915-68934 | MS.gene009506:CDS | 45.0% | |
| CCACAGACAATAGGATGTGA+TGG | - | 21496:68912-68931 | MS.gene009506:CDS | 45.0% | |
| CCACCATTGATGTAAGTTGC+TGG | + | 21496:69062-69081 | None:intergenic | 45.0% | |
| CCAGCAACTTACATCAATGG+TGG | - | 21496:69059-69078 | MS.gene009506:CDS | 45.0% | |
| CCATCACATCCTATTGTCTG+TGG | + | 21496:68915-68934 | None:intergenic | 45.0% | |
| CCGAGTAAGAATCCGAGTAT+TGG | + | 21496:67695-67714 | None:intergenic | 45.0% | |
| GAGAACTGTTGCGAAAAGAC+AGG | - | 21496:68691-68710 | MS.gene009506:intron | 45.0% | |
| GGAAGACTCTATGTTGGTGT+TGG | - | 21496:67340-67359 | MS.gene009506:CDS | 45.0% | |
| GGCTCATACAGTGATTCACT+TGG | - | 21496:67586-67605 | MS.gene009506:intron | 45.0% | |
| TGCACATGTCCTTCTCTCAA+GGG | - | 21496:68119-68138 | MS.gene009506:CDS | 45.0% | |
| TTACCGGCAAAGTACGCTAA+AGG | + | 21496:69095-69114 | None:intergenic | 45.0% | |
| ! | CCTAGAGCATCTCCAATACT+CGG | - | 21496:67680-67699 | MS.gene009506:CDS | 45.0% |
| !! | CTACAGAGAGCATTGCTGAA+TGG | - | 21496:68235-68254 | MS.gene009506:intron | 45.0% |
| AACTATTGTGGGGAGCTGCA+TGG | - | 21496:67995-68014 | MS.gene009506:intron | 50.0% | |
| AGCAAGTGCAGCAGCAGTTT+CGG | + | 21496:67470-67489 | None:intergenic | 50.0% | |
| CATCAGGAAATCCGTCGTTC+TGG | + | 21496:69013-69032 | None:intergenic | 50.0% | |
| CCTCTGTGGTGAATCCTCTT+GGG | + | 21496:68864-68883 | None:intergenic | 50.0% | |
| CTATAGTCACCGCGATCATC+AGG | + | 21496:69029-69048 | None:intergenic | 50.0% | |
| GGACCTTTAGCGTACTTTGC+CGG | - | 21496:69089-69108 | MS.gene009506:CDS | 50.0% | |
| GTGCACATGTCCTTCTCTCA+AGG | - | 21496:68118-68137 | MS.gene009506:CDS | 50.0% | |
| TCCTCTGTGGTGAATCCTCT+TGG | + | 21496:68865-68884 | None:intergenic | 50.0% | |
| TTCGGCAGCAACATCAGAAC+CGG | + | 21496:67452-67471 | None:intergenic | 50.0% | |
| TTGGTTGGAGCCATAGTTGG+AGG | - | 21496:68981-69000 | MS.gene009506:CDS | 50.0% | |
| ! | GACGGATTTCCTGATGATCG+CGG | - | 21496:69017-69036 | MS.gene009506:CDS | 50.0% |
| ! | GGAAATCCGTCGTTCTGGTT+TGG | + | 21496:69008-69027 | None:intergenic | 50.0% |
| ! | GGGAGCTGCATGGCTTTTTA+GGG | - | 21496:68005-68024 | MS.gene009506:intron | 50.0% |
| !! | CCGAGTATTGGAGATGCTCT+AGG | + | 21496:67683-67702 | None:intergenic | 50.0% |
| !! | CTGGTTTGGACCTCCAACTA+TGG | + | 21496:68994-69013 | None:intergenic | 50.0% |
| CCCAAGAGGATTCACCACAG+AGG | - | 21496:68861-68880 | MS.gene009506:CDS | 55.0% | |
| GGAGGTCCAAACCAGAACGA+CGG | - | 21496:68999-69018 | MS.gene009506:CDS | 55.0% | |
| TCGGCAGCAACATCAGAACC+GGG | + | 21496:67451-67470 | None:intergenic | 55.0% | |
| TGAGGAGATAGTCTGTGGCG+TGG | + | 21496:67300-67319 | None:intergenic | 55.0% | |
| ! | AACTGCTGCTGCACTTGCTG+CGG | - | 21496:67471-67490 | MS.gene009506:CDS | 55.0% |
| ! | GGGGAGCTGCATGGCTTTTT+AGG | - | 21496:68004-68023 | MS.gene009506:intron | 55.0% |
| GTCTGTGGCGTGGCGAATTG+CGG | + | 21496:67290-67309 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 21496 | gene | 67259 | 69121 | 67259 | ID=MS.gene009506 |
| 21496 | mRNA | 67259 | 69121 | 67259 | ID=MS.gene009506.t1;Parent=MS.gene009506 |
| 21496 | exon | 68729 | 69121 | 68729 | ID=MS.gene009506.t1.exon1;Parent=MS.gene009506.t1 |
| 21496 | CDS | 68729 | 69121 | 68729 | ID=cds.MS.gene009506.t1;Parent=MS.gene009506.t1 |
| 21496 | exon | 68240 | 68389 | 68240 | ID=MS.gene009506.t1.exon2;Parent=MS.gene009506.t1 |
| 21496 | CDS | 68240 | 68389 | 68240 | ID=cds.MS.gene009506.t1;Parent=MS.gene009506.t1 |
| 21496 | exon | 68028 | 68139 | 68028 | ID=MS.gene009506.t1.exon3;Parent=MS.gene009506.t1 |
| 21496 | CDS | 68028 | 68139 | 68028 | ID=cds.MS.gene009506.t1;Parent=MS.gene009506.t1 |
| 21496 | exon | 67664 | 67831 | 67664 | ID=MS.gene009506.t1.exon4;Parent=MS.gene009506.t1 |
| 21496 | CDS | 67664 | 67831 | 67664 | ID=cds.MS.gene009506.t1;Parent=MS.gene009506.t1 |
| 21496 | exon | 67259 | 67536 | 67259 | ID=MS.gene009506.t1.exon5;Parent=MS.gene009506.t1 |
| 21496 | CDS | 67259 | 67536 | 67259 | ID=cds.MS.gene009506.t1;Parent=MS.gene009506.t1 |
| Gene Sequence |
| Protein sequence |