Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02701.t1 | QCE16349.1 | 64.2 | 762 | 175 | 7 | 136 | 800 | 85 | 845 | 9.60E-268 | 932.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02701.t1 | Q8VYG3 | 65.4 | 462 | 138 | 3 | 360 | 799 | 24 | 485 | 9.4e-179 | 628.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02701.t1 | A0A4D6NUZ0 | 64.2 | 762 | 175 | 7 | 136 | 800 | 85 | 845 | 6.9e-268 | 932.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02701.t1 | MTR_3g105230 | 92.754 | 483 | 14 | 2 | 340 | 801 | 1 | 483 | 0.0 | 937 |
MS.gene02701.t1 | MTR_3g023740 | 84.886 | 483 | 52 | 2 | 340 | 801 | 1 | 483 | 0.0 | 847 |
MS.gene02701.t1 | MTR_5g009970 | 46.256 | 454 | 220 | 6 | 368 | 797 | 40 | 493 | 4.28e-137 | 416 |
MS.gene02701.t1 | MTR_5g010000 | 46.272 | 456 | 221 | 5 | 366 | 797 | 37 | 492 | 8.43e-133 | 404 |
MS.gene02701.t1 | MTR_5g085730 | 42.339 | 496 | 248 | 8 | 340 | 797 | 1 | 496 | 1.70e-124 | 384 |
MS.gene02701.t1 | MTR_3g080190 | 43.215 | 479 | 235 | 6 | 360 | 801 | 31 | 509 | 1.71e-123 | 381 |
MS.gene02701.t1 | MTR_8g099410 | 44.136 | 469 | 225 | 7 | 366 | 798 | 25 | 492 | 3.08e-123 | 380 |
MS.gene02701.t1 | MTR_3g080810 | 44.035 | 461 | 220 | 9 | 369 | 795 | 35 | 491 | 7.03e-123 | 379 |
MS.gene02701.t1 | MTR_5g093590 | 41.988 | 493 | 247 | 6 | 347 | 800 | 11 | 503 | 2.09e-121 | 375 |
MS.gene02701.t1 | MTR_8g099410 | 44.136 | 469 | 225 | 7 | 366 | 798 | 25 | 492 | 3.32e-121 | 379 |
MS.gene02701.t1 | MTR_8g104820 | 42.424 | 462 | 228 | 9 | 369 | 795 | 30 | 488 | 2.70e-119 | 369 |
MS.gene02701.t1 | MTR_3g117500 | 42.151 | 465 | 233 | 9 | 369 | 799 | 24 | 486 | 2.42e-117 | 364 |
MS.gene02701.t1 | MTR_5g009970 | 44.686 | 414 | 205 | 6 | 408 | 797 | 6 | 419 | 1.50e-115 | 357 |
MS.gene02701.t1 | MTR_3g010330 | 41.631 | 466 | 237 | 6 | 364 | 798 | 20 | 481 | 5.08e-114 | 355 |
MS.gene02701.t1 | MTR_4g035975 | 43.100 | 471 | 222 | 12 | 369 | 799 | 27 | 491 | 8.07e-113 | 352 |
MS.gene02701.t1 | MTR_4g035955 | 41.794 | 457 | 232 | 7 | 368 | 795 | 13 | 464 | 4.13e-112 | 350 |
MS.gene02701.t1 | MTR_4g035930 | 40.830 | 458 | 235 | 7 | 368 | 795 | 14 | 465 | 5.26e-110 | 344 |
MS.gene02701.t1 | MTR_4g074960 | 41.578 | 469 | 236 | 8 | 368 | 799 | 27 | 494 | 5.33e-110 | 349 |
MS.gene02701.t1 | MTR_1g037340 | 42.174 | 460 | 234 | 6 | 369 | 798 | 25 | 482 | 2.00e-106 | 335 |
MS.gene02701.t1 | MTR_1g088190 | 42.549 | 463 | 211 | 9 | 369 | 798 | 39 | 479 | 4.14e-106 | 334 |
MS.gene02701.t1 | MTR_5g009970 | 43.112 | 392 | 199 | 6 | 430 | 797 | 1 | 392 | 2.11e-103 | 324 |
MS.gene02701.t1 | MTR_3g113720 | 39.019 | 469 | 241 | 9 | 370 | 799 | 58 | 520 | 4.13e-102 | 325 |
MS.gene02701.t1 | MTR_8g075990 | 37.393 | 468 | 250 | 9 | 370 | 799 | 64 | 526 | 1.61e-87 | 287 |
MS.gene02701.t1 | MTR_5g009970 | 44.444 | 324 | 167 | 4 | 487 | 797 | 1 | 324 | 2.56e-84 | 272 |
MS.gene02701.t1 | MTR_1g015750 | 77.976 | 168 | 37 | 0 | 172 | 339 | 190 | 357 | 5.69e-83 | 270 |
MS.gene02701.t1 | MTR_1g015750 | 77.976 | 168 | 37 | 0 | 172 | 339 | 198 | 365 | 7.16e-83 | 270 |
MS.gene02701.t1 | MTR_2g028480 | 35.583 | 489 | 247 | 12 | 369 | 798 | 111 | 590 | 1.71e-78 | 265 |
MS.gene02701.t1 | MTR_3g090540 | 31.648 | 534 | 287 | 14 | 333 | 797 | 59 | 583 | 6.93e-73 | 249 |
MS.gene02701.t1 | MTR_3g082440 | 35.163 | 492 | 244 | 17 | 369 | 799 | 116 | 593 | 1.09e-70 | 244 |
MS.gene02701.t1 | MTR_1g088190 | 41.914 | 303 | 125 | 6 | 369 | 640 | 39 | 321 | 4.42e-58 | 202 |
MS.gene02701.t1 | MTR_1g015750 | 84.444 | 90 | 14 | 0 | 172 | 261 | 190 | 279 | 1.03e-47 | 171 |
MS.gene02701.t1 | MTR_1g111340 | 47.879 | 165 | 42 | 3 | 575 | 729 | 1 | 131 | 1.19e-37 | 137 |
MS.gene02701.t1 | MTR_7g108925 | 43.709 | 151 | 83 | 2 | 649 | 798 | 50 | 199 | 2.19e-35 | 134 |
MS.gene02701.t1 | MTR_3g105240 | 81.159 | 69 | 13 | 0 | 183 | 251 | 149 | 217 | 1.15e-31 | 124 |
MS.gene02701.t1 | MTR_0393s0050 | 41.791 | 134 | 77 | 1 | 648 | 780 | 26 | 159 | 8.34e-28 | 111 |
MS.gene02701.t1 | MTR_4g128810 | 26.291 | 426 | 202 | 16 | 382 | 799 | 14 | 335 | 6.90e-27 | 113 |
MS.gene02701.t1 | MTR_1g037320 | 39.267 | 191 | 102 | 2 | 430 | 606 | 1 | 191 | 1.64e-26 | 110 |
MS.gene02701.t1 | MTR_1g037320 | 41.803 | 122 | 69 | 2 | 675 | 795 | 169 | 289 | 6.75e-23 | 100 |
MS.gene02701.t1 | MTR_5g027970 | 33.333 | 153 | 84 | 5 | 177 | 318 | 632 | 777 | 9.64e-18 | 88.6 |
MS.gene02701.t1 | MTR_6g071360 | 36.054 | 147 | 73 | 6 | 211 | 338 | 703 | 847 | 2.28e-17 | 87.4 |
MS.gene02701.t1 | MTR_5g018510 | 40.698 | 86 | 48 | 2 | 197 | 279 | 713 | 798 | 5.73e-13 | 73.2 |
MS.gene02701.t1 | MTR_5g018510 | 40.698 | 86 | 48 | 2 | 197 | 279 | 712 | 797 | 6.03e-13 | 73.2 |
MS.gene02701.t1 | MTR_8g079010 | 35.294 | 119 | 60 | 5 | 176 | 279 | 558 | 674 | 3.46e-12 | 70.5 |
MS.gene02701.t1 | MTR_1g034300 | 27.381 | 168 | 96 | 4 | 197 | 338 | 677 | 844 | 4.19e-11 | 67.4 |
MS.gene02701.t1 | MTR_1g034300 | 27.381 | 168 | 96 | 4 | 197 | 338 | 676 | 843 | 4.44e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02701.t1 | AT3G43860 | 65.368 | 462 | 138 | 3 | 360 | 799 | 24 | 485 | 0.0 | 627 |
MS.gene02701.t1 | AT3G43860 | 65.368 | 462 | 138 | 3 | 360 | 799 | 24 | 485 | 0.0 | 627 |
MS.gene02701.t1 | AT4G11050 | 45.396 | 467 | 218 | 7 | 369 | 799 | 26 | 491 | 1.04e-127 | 393 |
MS.gene02701.t1 | AT4G11050 | 45.396 | 467 | 218 | 7 | 369 | 799 | 26 | 491 | 9.22e-127 | 393 |
MS.gene02701.t1 | AT4G11050 | 45.396 | 467 | 218 | 7 | 369 | 799 | 26 | 491 | 1.04e-126 | 393 |
MS.gene02701.t1 | AT4G23560 | 46.916 | 454 | 216 | 6 | 370 | 799 | 24 | 476 | 2.45e-126 | 387 |
MS.gene02701.t1 | AT4G09740 | 46.491 | 456 | 219 | 6 | 368 | 799 | 22 | 476 | 1.18e-125 | 385 |
MS.gene02701.t1 | AT4G02290 | 45.022 | 462 | 219 | 7 | 369 | 798 | 52 | 510 | 1.82e-124 | 383 |
MS.gene02701.t1 | AT1G64390 | 44.540 | 467 | 222 | 7 | 369 | 799 | 25 | 490 | 2.35e-123 | 384 |
MS.gene02701.t1 | AT1G02800 | 45.455 | 462 | 215 | 8 | 369 | 798 | 43 | 499 | 7.46e-122 | 376 |
MS.gene02701.t1 | AT1G70710 | 42.191 | 493 | 246 | 10 | 340 | 799 | 1 | 487 | 1.40e-121 | 375 |
MS.gene02701.t1 | AT2G32990 | 42.449 | 490 | 240 | 7 | 349 | 796 | 14 | 503 | 3.85e-120 | 372 |
MS.gene02701.t1 | AT1G23210 | 42.062 | 485 | 241 | 10 | 348 | 799 | 10 | 487 | 1.10e-117 | 365 |
MS.gene02701.t1 | AT1G71380 | 41.423 | 478 | 246 | 10 | 353 | 799 | 6 | 480 | 1.09e-113 | 354 |
MS.gene02701.t1 | AT1G22880 | 42.174 | 460 | 234 | 9 | 369 | 799 | 24 | 480 | 3.34e-112 | 350 |
MS.gene02701.t1 | AT2G44550 | 40.909 | 484 | 252 | 8 | 342 | 795 | 8 | 487 | 1.78e-110 | 346 |
MS.gene02701.t1 | AT4G39010 | 40.042 | 472 | 246 | 9 | 363 | 799 | 23 | 492 | 6.18e-109 | 342 |
MS.gene02701.t1 | AT2G44540 | 40.204 | 490 | 252 | 9 | 342 | 797 | 8 | 490 | 1.43e-107 | 338 |
MS.gene02701.t1 | AT1G19940 | 41.469 | 463 | 222 | 9 | 369 | 792 | 48 | 500 | 2.26e-106 | 336 |
MS.gene02701.t1 | AT1G19940 | 41.469 | 463 | 222 | 9 | 369 | 792 | 48 | 500 | 2.26e-106 | 336 |
MS.gene02701.t1 | AT2G44560 | 40.574 | 488 | 255 | 8 | 342 | 798 | 8 | 491 | 4.41e-105 | 332 |
MS.gene02701.t1 | AT2G44570 | 40.664 | 482 | 247 | 10 | 350 | 798 | 17 | 492 | 2.39e-102 | 325 |
MS.gene02701.t1 | AT1G48930 | 40.860 | 465 | 238 | 7 | 368 | 796 | 29 | 492 | 1.16e-101 | 327 |
MS.gene02701.t1 | AT1G75680 | 41.189 | 454 | 226 | 10 | 370 | 788 | 58 | 505 | 4.61e-99 | 317 |
MS.gene02701.t1 | AT4G39000 | 37.554 | 466 | 254 | 7 | 369 | 799 | 25 | 488 | 1.62e-97 | 312 |
MS.gene02701.t1 | AT4G38990 | 37.298 | 496 | 258 | 12 | 343 | 795 | 2 | 487 | 8.45e-95 | 305 |
MS.gene02701.t1 | AT4G02290 | 41.895 | 401 | 198 | 7 | 430 | 798 | 1 | 398 | 2.54e-92 | 295 |
MS.gene02701.t1 | AT1G22880 | 39.599 | 399 | 209 | 9 | 430 | 799 | 1 | 396 | 6.22e-86 | 278 |
MS.gene02701.t1 | AT2G26300 | 69.608 | 204 | 44 | 4 | 155 | 345 | 163 | 361 | 7.27e-86 | 278 |
MS.gene02701.t1 | AT2G26300 | 69.608 | 204 | 44 | 4 | 155 | 345 | 163 | 361 | 7.27e-86 | 278 |
MS.gene02701.t1 | AT4G39010 | 37.772 | 368 | 194 | 7 | 363 | 696 | 23 | 389 | 3.33e-81 | 266 |
MS.gene02701.t1 | AT5G49720 | 36.196 | 489 | 244 | 14 | 369 | 798 | 108 | 587 | 2.28e-78 | 265 |
MS.gene02701.t1 | AT1G19940 | 39.617 | 366 | 176 | 7 | 369 | 695 | 48 | 407 | 8.14e-74 | 247 |
MS.gene02701.t1 | AT4G24260 | 34.015 | 538 | 273 | 16 | 333 | 798 | 60 | 587 | 8.85e-71 | 244 |
MS.gene02701.t1 | AT2G44570 | 39.418 | 378 | 191 | 9 | 350 | 695 | 17 | 388 | 3.38e-70 | 237 |
MS.gene02701.t1 | AT1G65610 | 34.420 | 491 | 252 | 16 | 369 | 801 | 116 | 594 | 1.31e-67 | 236 |
MS.gene02701.t1 | AT1G22880 | 44.330 | 291 | 132 | 7 | 369 | 631 | 24 | 312 | 2.05e-65 | 221 |
MS.gene02701.t1 | AT4G38990 | 36.607 | 336 | 161 | 7 | 369 | 674 | 23 | 336 | 1.84e-55 | 195 |
MS.gene02701.t1 | AT4G24260 | 31.034 | 435 | 222 | 14 | 333 | 695 | 60 | 488 | 1.36e-41 | 159 |
MS.gene02701.t1 | AT4G24260 | 34.516 | 310 | 155 | 9 | 333 | 598 | 60 | 365 | 7.52e-39 | 150 |
MS.gene02701.t1 | AT1G31930 | 35.882 | 170 | 87 | 6 | 197 | 344 | 652 | 821 | 8.05e-19 | 92.0 |
MS.gene02701.t1 | AT1G31930 | 35.882 | 170 | 87 | 6 | 197 | 344 | 652 | 821 | 8.05e-19 | 92.0 |
MS.gene02701.t1 | AT1G31930 | 35.882 | 170 | 87 | 6 | 197 | 344 | 652 | 821 | 8.05e-19 | 92.0 |
MS.gene02701.t1 | AT1G31930 | 35.882 | 170 | 87 | 6 | 197 | 344 | 652 | 821 | 8.05e-19 | 92.0 |
MS.gene02701.t1 | AT1G31930 | 35.882 | 170 | 87 | 6 | 197 | 344 | 652 | 821 | 8.05e-19 | 92.0 |
MS.gene02701.t1 | AT1G31930 | 35.882 | 170 | 87 | 6 | 197 | 344 | 652 | 821 | 8.05e-19 | 92.0 |
MS.gene02701.t1 | AT2G23460 | 42.857 | 84 | 45 | 2 | 197 | 279 | 702 | 783 | 1.89e-13 | 74.7 |
Find 199 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAGCAAAGCTTGCTTCTT+TGG | 0.183970 | 3.3:-86464845 | MS.gene02701:CDS |
CTCCAAGGAACCCTGTTATT+TGG | 0.186545 | 3.3:+86466966 | None:intergenic |
ACCATGTATGATCTTCCTTC+TGG | 0.191808 | 3.3:+86465117 | None:intergenic |
CCTTTCTACTGCTCCTATTC+AGG | 0.255280 | 3.3:-86466132 | MS.gene02701:CDS |
TAACAGATGGATTACATATT+GGG | 0.264521 | 3.3:-86465147 | MS.gene02701:intron |
TACCAGGAGACAAATGTATT+TGG | 0.265919 | 3.3:+86465739 | None:intergenic |
AGCAGAAGATTGATGGTAAA+TGG | 0.278811 | 3.3:-86471830 | MS.gene02701:CDS |
TGGATTCTAAAAGAGTATAT+TGG | 0.281538 | 3.3:-86467118 | MS.gene02701:CDS |
CTAGCAAAGCTTGCTTCTTT+GGG | 0.282416 | 3.3:-86464844 | MS.gene02701:CDS |
GCAGGAGATAATGTGAAATA+TGG | 0.286093 | 3.3:-86466650 | MS.gene02701:CDS |
AGATCATACATGGTAGGATT+TGG | 0.292392 | 3.3:-86465108 | MS.gene02701:CDS |
ATGCTCAATCTCTTGTTTCC+CGG | 0.299876 | 3.3:+86468232 | None:intergenic |
AGATAAATGAGAGGAGAAAA+TGG | 0.312293 | 3.3:-86469449 | MS.gene02701:CDS |
TTAACAGATGGATTACATAT+TGG | 0.314396 | 3.3:-86465148 | MS.gene02701:intron |
CCAGTTAGTTCATGTGGATT+TGG | 0.315377 | 3.3:+86464973 | None:intergenic |
AAAATCCCTTATATTCTTAG+AGG | 0.322178 | 3.3:-86467012 | MS.gene02701:CDS |
CCATGTATGATCTTCCTTCT+GGG | 0.323883 | 3.3:+86465118 | None:intergenic |
TCTCCTCAACAAAGCAAAAT+TGG | 0.327119 | 3.3:-86466285 | MS.gene02701:intron |
AGGGTGGTGGTGAGTGACAG+TGG | 0.336091 | 3.3:-86472260 | MS.gene02701:CDS |
GAAAACTCCCTCCAAATAAC+AGG | 0.336359 | 3.3:-86466977 | MS.gene02701:CDS |
TTTGTGCCTCTAAGAATATA+AGG | 0.344488 | 3.3:+86467006 | None:intergenic |
CTAAGCATGTTGACCTGAAC+TGG | 0.352552 | 3.3:+86469723 | None:intergenic |
GTCGATGACTCTTGCCTTCG+AGG | 0.356668 | 3.3:+86468384 | None:intergenic |
ATTTGAAGCAACAAAGGAAA+TGG | 0.364952 | 3.3:-86466567 | MS.gene02701:CDS |
TCTTGTTTCCCGGTTGAAAC+TGG | 0.372145 | 3.3:+86468242 | None:intergenic |
GAATGGTGGTGAGGGGAGGG+TGG | 0.379697 | 3.3:-86472276 | MS.gene02701:CDS |
GTGAGTGACAGTGGTGGTGA+GGG | 0.379708 | 3.3:-86472251 | MS.gene02701:CDS |
TCGAAATGGCTGCAAAGAAA+TGG | 0.380962 | 3.3:-86464997 | MS.gene02701:CDS |
TGAATGTAGGTCGACCTATC+TGG | 0.385511 | 3.3:-86466686 | MS.gene02701:intron |
GATTTGGCAAAATCACATAA+AGG | 0.392643 | 3.3:-86466174 | MS.gene02701:CDS |
TGGTGGTGAGGGGAGGGTGG+TGG | 0.393894 | 3.3:-86472273 | MS.gene02701:CDS |
CAACAATGATGATCATCAAC+TGG | 0.395874 | 3.3:+86466455 | None:intergenic |
GGATTCTAAAAGAGTATATT+GGG | 0.397703 | 3.3:-86467117 | MS.gene02701:CDS |
ATTTGGTGGTAAGGACTATC+AGG | 0.398032 | 3.3:+86465756 | None:intergenic |
CACGGTCAGGAGCAGAGCTC+TGG | 0.398034 | 3.3:+86468056 | None:intergenic |
CCAAATCCACATGAACTAAC+TGG | 0.398410 | 3.3:-86464973 | MS.gene02701:CDS |
GATCATACATGGTAGGATTT+GGG | 0.403815 | 3.3:-86465107 | MS.gene02701:CDS |
GGGAAGGAGCAGAAGATTGA+TGG | 0.407263 | 3.3:-86471837 | MS.gene02701:CDS |
GTGAGTGATGGTGGTGGTGA+GGG | 0.410115 | 3.3:-86471858 | MS.gene02701:CDS |
ACTTATCAACCAGTTTCAAC+CGG | 0.416719 | 3.3:-86468251 | MS.gene02701:CDS |
TCGAATTTGTCATTTATGTC+AGG | 0.420508 | 3.3:+86464934 | None:intergenic |
TATTCAAGATGCAATCAAAT+GGG | 0.427350 | 3.3:-86466540 | MS.gene02701:CDS |
TATGTGCAAGGTTCAGTCTT+AGG | 0.428923 | 3.3:+86464892 | None:intergenic |
GGTGAGTGACAGTGGTGGTG+AGG | 0.431892 | 3.3:-86472252 | MS.gene02701:CDS |
GATGGGAGGGAGCATGTGAT+TGG | 0.433038 | 3.3:-86472038 | MS.gene02701:CDS |
CTCCAAATAACAGGGTTCCT+TGG | 0.434846 | 3.3:-86466968 | MS.gene02701:CDS |
GGTGAGTGATGGTGGTGGTG+AGG | 0.439482 | 3.3:-86471859 | MS.gene02701:CDS |
GGGATGGAGCATGTGGTTGA+TGG | 0.440414 | 3.3:-86472317 | MS.gene02701:CDS |
GGAGAATGGTGGTGAGGGGA+GGG | 0.440823 | 3.3:-86472105 | MS.gene02701:CDS |
GGAGAATGGTGGTGAGGGGA+GGG | 0.440823 | 3.3:-86472192 | MS.gene02701:CDS |
TATGCAAGAGTTCGTACAAC+TGG | 0.442846 | 3.3:-86469758 | MS.gene02701:intron |
GACAAATGTATTTGGTGGTA+AGG | 0.445589 | 3.3:+86465747 | None:intergenic |
TTGTGCCTCTAAGAATATAA+GGG | 0.447754 | 3.3:+86467007 | None:intergenic |
GTCTCGTGGATATCCAGTTC+AGG | 0.449713 | 3.3:-86469736 | MS.gene02701:intron |
GAGCAGGAGAATGGTGGTGA+GGG | 0.450309 | 3.3:-86472110 | MS.gene02701:CDS |
GAGCAGGAGAATGGTGGTGA+GGG | 0.450309 | 3.3:-86472197 | MS.gene02701:CDS |
GGACAATTGATATCTTCGTT+TGG | 0.451331 | 3.3:+86465030 | None:intergenic |
TTCTGAAACGGCTGCTGCTA+TGG | 0.452071 | 3.3:-86466357 | MS.gene02701:CDS |
ACATACGTTATAGCCTGAAT+AGG | 0.452957 | 3.3:+86466119 | None:intergenic |
TGATGGTGGTGGTGAGGGGA+AGG | 0.453175 | 3.3:-86471853 | MS.gene02701:CDS |
GAACTAACTGGAGCCATTGT+AGG | 0.453420 | 3.3:-86464961 | MS.gene02701:CDS |
CAGGTGATGGTGAGTGATGG+TGG | 0.454129 | 3.3:-86471867 | MS.gene02701:CDS |
AGAATGAGCAGGAGAATGAT+GGG | 0.459403 | 3.3:-86472007 | MS.gene02701:CDS |
AGGAAGCATGATACTTGTCC+AGG | 0.461040 | 3.3:-86467063 | MS.gene02701:CDS |
TCTTCGTTTGGTGACAACTT+TGG | 0.462848 | 3.3:+86465042 | None:intergenic |
AGCTCATCATAGAGGTGCTT+CGG | 0.465062 | 3.3:-86465067 | MS.gene02701:CDS |
AGGAGAATGGTGGTGAGGGG+AGG | 0.465935 | 3.3:-86472106 | MS.gene02701:CDS |
AGGAGAATGGTGGTGAGGGG+AGG | 0.465935 | 3.3:-86472193 | MS.gene02701:CDS |
CTGAATAGGAGCAGTAGAAA+GGG | 0.466637 | 3.3:+86466133 | None:intergenic |
TGGCAGTGGTGGTGATGGGA+GGG | 0.467369 | 3.3:-86472051 | MS.gene02701:CDS |
GGAGAATGGTGGTGAGGGGA+GGG | 0.467528 | 3.3:-86472279 | MS.gene02701:CDS |
TCACATAAAGGAACATATGA+TGG | 0.468381 | 3.3:-86466162 | MS.gene02701:CDS |
TTCTTAGAGGCACAAAGATC+AGG | 0.468999 | 3.3:-86466999 | MS.gene02701:CDS |
ATATTCAAGATGCAATCAAA+TGG | 0.469316 | 3.3:-86466541 | MS.gene02701:CDS |
AGTTGATGATCATCATTGTT+GGG | 0.470055 | 3.3:-86466453 | MS.gene02701:CDS |
AAATGGATCCATCTCTTTGA+AGG | 0.470215 | 3.3:-86469432 | MS.gene02701:CDS |
AGGGTGATGGTGAGTGACAG+TGG | 0.470293 | 3.3:-86472086 | MS.gene02701:CDS |
AGGGTGATGGTGAGTGACAG+TGG | 0.470293 | 3.3:-86472173 | MS.gene02701:CDS |
GAGAATGAGCAGGAGAATGA+TGG | 0.476231 | 3.3:-86472008 | MS.gene02701:CDS |
CGGAGAATGGTGGTGAGGGG+AGG | 0.478007 | 3.3:-86472280 | MS.gene02701:CDS |
GGACAAGTATCATGCTTCCT+TGG | 0.482582 | 3.3:+86467066 | None:intergenic |
TCACTGTGACTACATTATCA+TGG | 0.484072 | 3.3:-86466613 | MS.gene02701:CDS |
TTTGAAGCAACAAAGGAAAT+GGG | 0.485003 | 3.3:-86466566 | MS.gene02701:CDS |
GAGTCGGAGAATGGTGGTGA+GGG | 0.485236 | 3.3:-86472284 | MS.gene02701:CDS |
CCTGAATAGGAGCAGTAGAA+AGG | 0.488990 | 3.3:+86466132 | None:intergenic |
TTCAGAAGCAATCTCACTAC+CGG | 0.492191 | 3.3:+86466373 | None:intergenic |
GTCTATAGACTCTTTGATGT+TGG | 0.500114 | 3.3:-86469477 | MS.gene02701:CDS |
CAGTTGATGATCATCATTGT+TGG | 0.500741 | 3.3:-86466454 | MS.gene02701:CDS |
TATGTTAATTCTCTTGCAGC+TGG | 0.501079 | 3.3:-86464871 | MS.gene02701:CDS |
CACCAAATACATTTGTCTCC+TGG | 0.502545 | 3.3:-86465741 | MS.gene02701:intron |
CAGGAGATAATGTGAAATAT+GGG | 0.502944 | 3.3:-86466649 | MS.gene02701:CDS |
CAAGGAACCCTGTTATTTGG+AGG | 0.510003 | 3.3:+86466969 | None:intergenic |
GTGATGGCAGTGGTGGTGAT+GGG | 0.515449 | 3.3:-86472055 | MS.gene02701:CDS |
GGGTCAATTTAATTATAAAG+AGG | 0.516477 | 3.3:-86467042 | MS.gene02701:CDS |
ATGGCAGTGGTGGTGATGGG+AGG | 0.516487 | 3.3:-86472052 | MS.gene02701:CDS |
CATCATAATATCCTCCAGAT+AGG | 0.517630 | 3.3:+86466672 | None:intergenic |
CTTTATAATTAAATTGACCC+TGG | 0.518556 | 3.3:+86467045 | None:intergenic |
TGGTGGTGAGGGGAGGGTGA+TGG | 0.519531 | 3.3:-86472099 | MS.gene02701:CDS |
TGGTGGTGAGGGGAGGGTGA+TGG | 0.519531 | 3.3:-86472186 | MS.gene02701:CDS |
CAGCCATTTCGAAAAGCTCG+TGG | 0.520074 | 3.3:+86465008 | None:intergenic |
CTATGATGAGCTTGTGTGGG+TGG | 0.520571 | 3.3:+86465078 | None:intergenic |
TCTGGAGGATATTATGATGC+AGG | 0.520913 | 3.3:-86466668 | MS.gene02701:CDS |
ACCTCTATGATGAGCTTGTG+TGG | 0.521792 | 3.3:+86465074 | None:intergenic |
TATAGACTCTTTGATGTTGG+CGG | 0.523127 | 3.3:-86469474 | MS.gene02701:CDS |
GAAGATTGATGGTAAATGGA+AGG | 0.524121 | 3.3:-86471826 | MS.gene02701:CDS |
GAGGAGAATGAGCAGGAGAA+TGG | 0.525424 | 3.3:-86472119 | MS.gene02701:CDS |
TGATGGTGAAGAGAATGAGC+AGG | 0.526015 | 3.3:-86472213 | MS.gene02701:CDS |
TAGTGAGATTGCTTCTGAAA+CGG | 0.528733 | 3.3:-86466369 | MS.gene02701:CDS |
AAGACACGATCTACACGGTC+AGG | 0.530903 | 3.3:+86468043 | None:intergenic |
GGGATGAAGCATGTGATTGA+TGG | 0.532712 | 3.3:-86472230 | MS.gene02701:CDS |
CTGTAACTCCTTCAAAGAGA+TGG | 0.533746 | 3.3:+86469424 | None:intergenic |
CATGTAGGATGAATTGTTGT+GGG | 0.533902 | 3.3:-86465985 | MS.gene02701:intron |
CCCAGAAGGAAGATCATACA+TGG | 0.534406 | 3.3:-86465118 | MS.gene02701:CDS |
TGACAGCAAGAACAGAATGA+TGG | 0.535189 | 3.3:-86468949 | MS.gene02701:CDS |
CAGGAGACAAATGTATTTGG+TGG | 0.535513 | 3.3:+86465742 | None:intergenic |
GGATTTATTCATATGAGAGA+TGG | 0.536941 | 3.3:-86465632 | MS.gene02701:CDS |
TGAGTGATGGTGGTGGTGAG+GGG | 0.538596 | 3.3:-86471857 | MS.gene02701:CDS |
CACTGTGACTACATTATCAT+GGG | 0.541514 | 3.3:-86466612 | MS.gene02701:CDS |
AATTGTTGTGGGCAGCAACT+TGG | 0.542150 | 3.3:-86465974 | MS.gene02701:CDS |
AGTGATGGCAGTGGTGGTGA+TGG | 0.543004 | 3.3:-86472056 | MS.gene02701:CDS |
CTTGAAACATTTAAAGCACA+TGG | 0.547835 | 3.3:-86465804 | MS.gene02701:CDS |
AGCAGGAGAATGGTGGTGAG+GGG | 0.548557 | 3.3:-86472109 | MS.gene02701:CDS |
AGCAGGAGAATGGTGGTGAG+GGG | 0.548557 | 3.3:-86472196 | MS.gene02701:CDS |
ATGGCTCCAGTTAGTTCATG+TGG | 0.549625 | 3.3:+86464967 | None:intergenic |
TGAGCAGGAGAATGGTGGTG+AGG | 0.550200 | 3.3:-86472111 | MS.gene02701:CDS |
TGAGCAGGAGAATGGTGGTG+AGG | 0.550200 | 3.3:-86472198 | MS.gene02701:CDS |
GAAGAGAATGAGCAGGAGAA+TGG | 0.551775 | 3.3:-86472206 | MS.gene02701:CDS |
GCATGGCTTACTTTGTTCCA+AGG | 0.555429 | 3.3:-86467083 | MS.gene02701:CDS |
GAGGAGAATGAGTCGGAGAA+TGG | 0.555928 | 3.3:-86472293 | MS.gene02701:CDS |
GCATGATGGAGCAAAGGAGT+TGG | 0.556929 | 3.3:-86470129 | MS.gene02701:CDS |
TGACAGTGGTGGCGAGAGGA+TGG | 0.559981 | 3.3:-86472159 | MS.gene02701:CDS |
GGCAGCAACTTGGTTATACA+TGG | 0.560142 | 3.3:-86465964 | MS.gene02701:CDS |
GGAGACTCGGCTGTCGATGA+CGG | 0.560332 | 3.3:-86466942 | MS.gene02701:CDS |
GCCGGTAGCATATTGTGTAT+TGG | 0.563729 | 3.3:+86465607 | None:intergenic |
TGGTGGCGAGGAGAATGAGC+AGG | 0.564076 | 3.3:-86472018 | MS.gene02701:CDS |
CCTCTATGATGAGCTTGTGT+GGG | 0.566191 | 3.3:+86465075 | None:intergenic |
AACAGAATTTGAAGCAACAA+AGG | 0.567677 | 3.3:-86466573 | MS.gene02701:CDS |
TGAGTGACAGTGGTGGTGAG+GGG | 0.568222 | 3.3:-86472250 | MS.gene02701:CDS |
GCCAATACACAATATGCTAC+CGG | 0.569100 | 3.3:-86465608 | MS.gene02701:CDS |
TTGTTATTTGACAGCCCTGT+TGG | 0.572334 | 3.3:-86469522 | MS.gene02701:intron |
AGTTCGTACAACTGGTCTCG+TGG | 0.575077 | 3.3:-86469750 | MS.gene02701:CDS |
TGAGTCGGAGAATGGTGGTG+AGG | 0.576572 | 3.3:-86472285 | MS.gene02701:CDS |
AGTCGGAGAATGGTGGTGAG+GGG | 0.576959 | 3.3:-86472283 | MS.gene02701:CDS |
GAGCAGGTGATGGTGAGTGA+TGG | 0.578806 | 3.3:-86471870 | MS.gene02701:intron |
AAGGAACCCTGTTATTTGGA+GGG | 0.579113 | 3.3:+86466970 | None:intergenic |
CCCACACAAGCTCATCATAG+AGG | 0.580704 | 3.3:-86465075 | MS.gene02701:CDS |
GTTGGAGAAAATAAGAGAAG+AGG | 0.582712 | 3.3:-86469504 | MS.gene02701:CDS |
GTAGTCACAGTGAATGCCAT+TGG | 0.585430 | 3.3:+86466623 | None:intergenic |
GGGAGGGAGCATGTGATTGG+TGG | 0.586588 | 3.3:-86472035 | MS.gene02701:CDS |
AACAGATGGATTACATATTG+GGG | 0.589442 | 3.3:-86465146 | MS.gene02701:intron |
GGAGCATGTGATTGGTGGCG+AGG | 0.596886 | 3.3:-86472030 | MS.gene02701:CDS |
ATCGTGTCTTCAAGATCGAT+CGG | 0.598747 | 3.3:-86468030 | MS.gene02701:CDS |
TGAGCAGGAGAATGATGGGA+AGG | 0.598755 | 3.3:-86472003 | MS.gene02701:CDS |
ATTGGGCAATCATTGTAGCA+TGG | 0.598810 | 3.3:-86467100 | MS.gene02701:CDS |
GGCGAGAGTGATGGCAGTGG+TGG | 0.601204 | 3.3:-86472062 | MS.gene02701:CDS |
GGAGCATGTGGTTGATGGTG+AGG | 0.603438 | 3.3:-86472312 | MS.gene02701:CDS |
CTTATCAACCAGTTTCAACC+GGG | 0.606530 | 3.3:-86468250 | MS.gene02701:CDS |
TGATGGTGAGGAGAATGAGC+AGG | 0.607495 | 3.3:-86472126 | MS.gene02701:CDS |
GAAGGAAGATCATACATGGT+AGG | 0.609021 | 3.3:-86465114 | MS.gene02701:CDS |
TTTAAACAGGTACTGCATGA+TGG | 0.611891 | 3.3:-86470143 | MS.gene02701:intron |
CTAACTGGAGCCATTGTAGG+TGG | 0.611930 | 3.3:-86464958 | MS.gene02701:CDS |
GAGAATGAGCAGGAGAATGG+TGG | 0.615117 | 3.3:-86472116 | MS.gene02701:CDS |
GAGAATGAGCAGGAGAATGG+TGG | 0.615117 | 3.3:-86472203 | MS.gene02701:CDS |
AGTGAACAAGAAAGATGTGC+CGG | 0.615391 | 3.3:+86465589 | None:intergenic |
TATGTCAGGTCCACCTACAA+TGG | 0.616354 | 3.3:+86464948 | None:intergenic |
GGTTCCTTGGAGAGGAGACT+CGG | 0.618882 | 3.3:-86466955 | MS.gene02701:CDS |
GACAGTGGTGGCGAGAGTGA+TGG | 0.620165 | 3.3:-86472071 | MS.gene02701:CDS |
GGTACTGCATGATGGAGCAA+AGG | 0.624025 | 3.3:-86470135 | MS.gene02701:CDS |
GTGATGGTGAGTGATGGTGG+TGG | 0.626115 | 3.3:-86471864 | MS.gene02701:CDS |
TGTGAAATATGGGTTACCAA+TGG | 0.626157 | 3.3:-86466639 | MS.gene02701:CDS |
TCTTGAAGACACGATCTACA+CGG | 0.626721 | 3.3:+86468038 | None:intergenic |
TCATGTAGGATGAATTGTTG+TGG | 0.627857 | 3.3:-86465986 | MS.gene02701:intron |
AGAGAATTAACATATGTGCA+AGG | 0.635433 | 3.3:+86464880 | None:intergenic |
ACAGCCGAGTCTCCTCTCCA+AGG | 0.637628 | 3.3:+86466951 | None:intergenic |
TGATTAGGGGATGGAGCATG+TGG | 0.638170 | 3.3:-86472324 | None:intergenic |
TCAGAAGCAATCTCACTACC+GGG | 0.644101 | 3.3:+86466374 | None:intergenic |
GAGAATGAGTCGGAGAATGG+TGG | 0.645621 | 3.3:-86472290 | MS.gene02701:CDS |
GTGGTGGTGAGTGACAGTGG+TGG | 0.649030 | 3.3:-86472257 | MS.gene02701:CDS |
GAACAGAATGATGGAAACCA+AGG | 0.651848 | 3.3:-86468940 | MS.gene02701:CDS |
AATAACAGGGTTCCTTGGAG+AGG | 0.653619 | 3.3:-86466963 | MS.gene02701:CDS |
TAAATGGAAGGAGAAGATGA+TGG | 0.655671 | 3.3:-86471814 | MS.gene02701:intron |
TGATGGTGAGGAGAATGAGT+CGG | 0.655717 | 3.3:-86472300 | MS.gene02701:CDS |
AGGATGGAGCATGTGACTGA+TGG | 0.655910 | 3.3:-86472143 | MS.gene02701:CDS |
AGCCATTTCGAAAAGCTCGT+GGG | 0.656326 | 3.3:+86465009 | None:intergenic |
ATTCAAGATGCAATCAAATG+GGG | 0.657597 | 3.3:-86466539 | MS.gene02701:CDS |
AACAATGATGATCATCAACT+GGG | 0.657794 | 3.3:+86466456 | None:intergenic |
GGAAGCATGATACTTGTCCA+GGG | 0.658370 | 3.3:-86467062 | MS.gene02701:CDS |
TGATGGGAAGGAGCATGCGA+TGG | 0.664658 | 3.3:-86471991 | MS.gene02701:intron |
TTGGCGGCCAGATAAATGAG+AGG | 0.667059 | 3.3:-86469458 | MS.gene02701:CDS |
GGTGGCGAGAGTGATGGCAG+TGG | 0.667128 | 3.3:-86472065 | MS.gene02701:CDS |
GGTGGTAAGGACTATCAGGA+AGG | 0.672514 | 3.3:+86465760 | None:intergenic |
GTACATGAAACCTCAAAACA+TGG | 0.675416 | 3.3:+86468891 | None:intergenic |
GGAGCATGTGACTGATGGTG+AGG | 0.694254 | 3.3:-86472138 | MS.gene02701:CDS |
ATGTAGGTCGACCTATCTGG+AGG | 0.697352 | 3.3:-86466683 | MS.gene02701:intron |
AAAACTCCCTCCAAATAACA+GGG | 0.697948 | 3.3:-86466976 | MS.gene02701:CDS |
GTAATTGATAGTAACACACC+CGG | 0.711099 | 3.3:-86466392 | MS.gene02701:CDS |
TGAGTGACAGTGGTGGCGAG+AGG | 0.726504 | 3.3:-86472163 | MS.gene02701:CDS |
GTGATGGTGAGTGACAGTGG+TGG | 0.785967 | 3.3:-86472083 | MS.gene02701:CDS |
GTGATGGTGAGTGACAGTGG+TGG | 0.785967 | 3.3:-86472170 | MS.gene02701:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 86464840 | 86472336 | 86464840 | ID=MS.gene02701 |
chr3.3 | mRNA | 86464840 | 86472336 | 86464840 | ID=MS.gene02701.t1;Parent=MS.gene02701 |
chr3.3 | exon | 86471992 | 86472336 | 86471992 | ID=MS.gene02701.t1.exon1;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86471992 | 86472336 | 86471992 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86471815 | 86471886 | 86471815 | ID=MS.gene02701.t1.exon2;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86471815 | 86471886 | 86471815 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86470056 | 86470156 | 86470056 | ID=MS.gene02701.t1.exon3;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86470056 | 86470156 | 86470056 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86469737 | 86469772 | 86469737 | ID=MS.gene02701.t1.exon4;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86469737 | 86469772 | 86469737 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86469396 | 86469530 | 86469396 | ID=MS.gene02701.t1.exon5;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86469396 | 86469530 | 86469396 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86468902 | 86468995 | 86468902 | ID=MS.gene02701.t1.exon6;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86468902 | 86468995 | 86468902 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86468376 | 86468459 | 86468376 | ID=MS.gene02701.t1.exon7;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86468376 | 86468459 | 86468376 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86468224 | 86468279 | 86468224 | ID=MS.gene02701.t1.exon8;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86468224 | 86468279 | 86468224 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86468028 | 86468111 | 86468028 | ID=MS.gene02701.t1.exon9;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86468028 | 86468111 | 86468028 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86466929 | 86467151 | 86466929 | ID=MS.gene02701.t1.exon10;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86466929 | 86467151 | 86466929 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86466516 | 86466699 | 86466516 | ID=MS.gene02701.t1.exon11;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86466516 | 86466699 | 86466516 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86466286 | 86466482 | 86466286 | ID=MS.gene02701.t1.exon12;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86466286 | 86466482 | 86466286 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86466125 | 86466202 | 86466125 | ID=MS.gene02701.t1.exon13;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86466125 | 86466202 | 86466125 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86465895 | 86466000 | 86465895 | ID=MS.gene02701.t1.exon14;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86465895 | 86466000 | 86465895 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86465742 | 86465864 | 86465742 | ID=MS.gene02701.t1.exon15;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86465742 | 86465864 | 86465742 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86465493 | 86465656 | 86465493 | ID=MS.gene02701.t1.exon16;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86465493 | 86465656 | 86465493 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
chr3.3 | exon | 86464840 | 86465163 | 86464840 | ID=MS.gene02701.t1.exon17;Parent=MS.gene02701.t1 |
chr3.3 | CDS | 86464840 | 86465163 | 86464840 | ID=cds.MS.gene02701.t1;Parent=MS.gene02701.t1 |
Gene Sequence |
Protein sequence |