Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044195.t1 | XP_003601390.1 | 98.9 | 525 | 6 | 0 | 1 | 525 | 1 | 525 | 0.00E+00 | 1088.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044195.t1 | O48766 | 73.0 | 514 | 128 | 2 | 22 | 525 | 11 | 523 | 3.3e-233 | 808.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044195.t1 | G7J6Q9 | 98.9 | 525 | 6 | 0 | 1 | 525 | 1 | 525 | 0.0e+00 | 1088.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044195.t1 | MTR_3g080190 | 98.857 | 525 | 6 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1092 |
| MS.gene044195.t1 | MTR_5g085730 | 82.016 | 506 | 89 | 2 | 21 | 525 | 12 | 516 | 0.0 | 885 |
| MS.gene044195.t1 | MTR_5g093590 | 71.753 | 485 | 136 | 1 | 22 | 505 | 16 | 500 | 0.0 | 747 |
| MS.gene044195.t1 | MTR_8g099410 | 61.803 | 466 | 176 | 1 | 40 | 505 | 28 | 491 | 0.0 | 629 |
| MS.gene044195.t1 | MTR_8g099410 | 61.803 | 466 | 176 | 1 | 40 | 505 | 28 | 491 | 0.0 | 627 |
| MS.gene044195.t1 | MTR_4g074960 | 60.897 | 468 | 180 | 3 | 39 | 505 | 27 | 492 | 0.0 | 598 |
| MS.gene044195.t1 | MTR_1g037340 | 50.620 | 484 | 227 | 6 | 23 | 503 | 5 | 479 | 1.57e-168 | 486 |
| MS.gene044195.t1 | MTR_5g009970 | 48.408 | 471 | 224 | 6 | 39 | 506 | 40 | 494 | 6.19e-154 | 449 |
| MS.gene044195.t1 | MTR_5g010000 | 48.536 | 478 | 227 | 6 | 36 | 510 | 36 | 497 | 1.14e-153 | 449 |
| MS.gene044195.t1 | MTR_3g080810 | 48.936 | 470 | 229 | 7 | 38 | 505 | 33 | 493 | 1.89e-152 | 445 |
| MS.gene044195.t1 | MTR_8g104820 | 49.362 | 470 | 225 | 8 | 40 | 505 | 30 | 490 | 1.97e-152 | 445 |
| MS.gene044195.t1 | MTR_3g117500 | 48.511 | 470 | 231 | 6 | 40 | 506 | 24 | 485 | 3.17e-151 | 442 |
| MS.gene044195.t1 | MTR_3g105230 | 46.436 | 463 | 232 | 5 | 31 | 493 | 21 | 467 | 1.24e-146 | 430 |
| MS.gene044195.t1 | MTR_4g035930 | 44.491 | 481 | 252 | 6 | 26 | 505 | 1 | 467 | 4.50e-145 | 425 |
| MS.gene044195.t1 | MTR_4g035955 | 45.322 | 481 | 247 | 7 | 26 | 505 | 1 | 466 | 1.52e-144 | 424 |
| MS.gene044195.t1 | MTR_3g023740 | 45.657 | 495 | 245 | 6 | 23 | 509 | 5 | 483 | 1.05e-142 | 420 |
| MS.gene044195.t1 | MTR_3g010330 | 47.122 | 469 | 232 | 7 | 40 | 505 | 25 | 480 | 9.46e-140 | 412 |
| MS.gene044195.t1 | MTR_4g035975 | 45.875 | 497 | 239 | 10 | 25 | 505 | 7 | 489 | 2.73e-138 | 409 |
| MS.gene044195.t1 | MTR_1g088190 | 46.341 | 492 | 220 | 10 | 15 | 503 | 26 | 476 | 1.08e-137 | 407 |
| MS.gene044195.t1 | MTR_5g009970 | 47.430 | 428 | 206 | 6 | 82 | 506 | 9 | 420 | 1.70e-133 | 394 |
| MS.gene044195.t1 | MTR_3g113720 | 43.312 | 471 | 253 | 9 | 41 | 506 | 58 | 519 | 7.43e-125 | 375 |
| MS.gene044195.t1 | MTR_5g009970 | 45.721 | 409 | 203 | 6 | 101 | 506 | 1 | 393 | 3.75e-121 | 362 |
| MS.gene044195.t1 | MTR_8g075990 | 43.220 | 472 | 252 | 10 | 41 | 506 | 64 | 525 | 1.16e-119 | 362 |
| MS.gene044195.t1 | MTR_2g028480 | 42.074 | 511 | 253 | 16 | 40 | 523 | 111 | 605 | 1.50e-103 | 324 |
| MS.gene044195.t1 | MTR_3g082440 | 39.095 | 486 | 260 | 15 | 40 | 502 | 116 | 588 | 1.55e-93 | 298 |
| MS.gene044195.t1 | MTR_3g090540 | 36.111 | 540 | 278 | 18 | 19 | 510 | 68 | 588 | 1.04e-92 | 295 |
| MS.gene044195.t1 | MTR_5g009970 | 45.161 | 341 | 168 | 6 | 169 | 506 | 1 | 325 | 3.42e-88 | 275 |
| MS.gene044195.t1 | MTR_1g088190 | 44.776 | 335 | 144 | 8 | 15 | 347 | 26 | 321 | 7.54e-76 | 243 |
| MS.gene044195.t1 | MTR_1g037320 | 54.658 | 161 | 72 | 1 | 101 | 261 | 1 | 160 | 1.83e-46 | 164 |
| MS.gene044195.t1 | MTR_1g037320 | 47.541 | 122 | 63 | 1 | 382 | 503 | 169 | 289 | 4.93e-33 | 127 |
| MS.gene044195.t1 | MTR_7g108925 | 47.742 | 155 | 80 | 1 | 349 | 503 | 43 | 196 | 1.08e-45 | 160 |
| MS.gene044195.t1 | MTR_0393s0050 | 45.714 | 140 | 76 | 0 | 349 | 488 | 20 | 159 | 2.42e-37 | 136 |
| MS.gene044195.t1 | MTR_4g128810 | 27.500 | 320 | 155 | 10 | 216 | 502 | 55 | 330 | 9.00e-28 | 114 |
| MS.gene044195.t1 | MTR_4g047570 | 32.174 | 115 | 55 | 3 | 289 | 402 | 2 | 94 | 5.52e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044195.t1 | AT2G32990 | 75.051 | 493 | 113 | 1 | 22 | 504 | 11 | 503 | 0.0 | 786 |
| MS.gene044195.t1 | AT1G64390 | 62.446 | 466 | 173 | 1 | 40 | 505 | 25 | 488 | 0.0 | 623 |
| MS.gene044195.t1 | AT4G11050 | 61.242 | 467 | 179 | 1 | 40 | 506 | 26 | 490 | 0.0 | 612 |
| MS.gene044195.t1 | AT4G11050 | 61.242 | 467 | 179 | 1 | 40 | 506 | 26 | 490 | 0.0 | 612 |
| MS.gene044195.t1 | AT4G11050 | 61.242 | 467 | 179 | 1 | 40 | 506 | 26 | 490 | 0.0 | 609 |
| MS.gene044195.t1 | AT1G48930 | 58.584 | 466 | 191 | 2 | 39 | 504 | 29 | 492 | 0.0 | 550 |
| MS.gene044195.t1 | AT2G44550 | 51.566 | 479 | 223 | 4 | 25 | 503 | 18 | 487 | 1.96e-168 | 486 |
| MS.gene044195.t1 | AT2G44540 | 50.830 | 482 | 227 | 5 | 22 | 503 | 17 | 488 | 8.49e-164 | 474 |
| MS.gene044195.t1 | AT2G44560 | 51.458 | 480 | 224 | 5 | 24 | 503 | 18 | 488 | 7.51e-162 | 469 |
| MS.gene044195.t1 | AT2G44570 | 48.447 | 483 | 240 | 5 | 24 | 505 | 17 | 491 | 2.24e-160 | 465 |
| MS.gene044195.t1 | AT1G02800 | 50.968 | 465 | 216 | 6 | 40 | 503 | 43 | 496 | 7.39e-152 | 444 |
| MS.gene044195.t1 | AT4G02290 | 50.000 | 468 | 222 | 7 | 40 | 505 | 52 | 509 | 1.01e-151 | 444 |
| MS.gene044195.t1 | AT1G70710 | 47.619 | 483 | 243 | 6 | 24 | 505 | 12 | 485 | 1.17e-151 | 443 |
| MS.gene044195.t1 | AT4G39010 | 47.234 | 470 | 236 | 7 | 40 | 505 | 29 | 490 | 8.67e-148 | 433 |
| MS.gene044195.t1 | AT1G23210 | 47.752 | 467 | 234 | 6 | 40 | 505 | 28 | 485 | 7.18e-147 | 431 |
| MS.gene044195.t1 | AT4G23560 | 47.737 | 486 | 234 | 8 | 24 | 506 | 7 | 475 | 1.05e-146 | 430 |
| MS.gene044195.t1 | AT4G09740 | 47.844 | 487 | 232 | 8 | 24 | 506 | 7 | 475 | 1.46e-146 | 429 |
| MS.gene044195.t1 | AT3G43860 | 45.530 | 481 | 245 | 6 | 26 | 505 | 19 | 483 | 3.80e-142 | 419 |
| MS.gene044195.t1 | AT3G43860 | 45.530 | 481 | 245 | 6 | 26 | 505 | 19 | 483 | 3.80e-142 | 419 |
| MS.gene044195.t1 | AT1G22880 | 46.901 | 484 | 242 | 8 | 24 | 505 | 8 | 478 | 4.86e-141 | 416 |
| MS.gene044195.t1 | AT1G71380 | 46.201 | 487 | 244 | 10 | 24 | 505 | 5 | 478 | 5.87e-139 | 410 |
| MS.gene044195.t1 | AT1G19940 | 47.619 | 462 | 232 | 7 | 40 | 500 | 48 | 500 | 3.19e-138 | 409 |
| MS.gene044195.t1 | AT1G19940 | 47.619 | 462 | 232 | 7 | 40 | 500 | 48 | 500 | 3.19e-138 | 409 |
| MS.gene044195.t1 | AT4G39000 | 45.895 | 475 | 245 | 7 | 40 | 510 | 25 | 491 | 1.53e-136 | 404 |
| MS.gene044195.t1 | AT1G75680 | 47.702 | 457 | 229 | 7 | 41 | 496 | 58 | 505 | 1.76e-133 | 398 |
| MS.gene044195.t1 | AT4G38990 | 43.673 | 490 | 259 | 9 | 25 | 505 | 8 | 489 | 1.74e-127 | 381 |
| MS.gene044195.t1 | AT4G02290 | 47.420 | 407 | 202 | 7 | 101 | 505 | 1 | 397 | 1.84e-118 | 355 |
| MS.gene044195.t1 | AT2G44570 | 45.823 | 395 | 205 | 5 | 24 | 417 | 17 | 403 | 3.87e-115 | 347 |
| MS.gene044195.t1 | AT1G22880 | 45.209 | 407 | 208 | 8 | 101 | 505 | 1 | 394 | 6.38e-113 | 340 |
| MS.gene044195.t1 | AT4G39010 | 46.448 | 366 | 185 | 6 | 40 | 401 | 29 | 387 | 4.82e-110 | 333 |
| MS.gene044195.t1 | AT1G19940 | 45.879 | 364 | 192 | 5 | 40 | 402 | 48 | 407 | 1.24e-99 | 307 |
| MS.gene044195.t1 | AT5G49720 | 42.245 | 490 | 242 | 16 | 40 | 502 | 108 | 583 | 1.08e-96 | 306 |
| MS.gene044195.t1 | AT4G24260 | 41.104 | 489 | 251 | 15 | 40 | 503 | 108 | 584 | 3.12e-87 | 281 |
| MS.gene044195.t1 | AT1G65610 | 35.887 | 496 | 283 | 15 | 40 | 513 | 116 | 598 | 4.14e-87 | 281 |
| MS.gene044195.t1 | AT4G38990 | 43.017 | 358 | 174 | 6 | 25 | 381 | 8 | 336 | 1.58e-83 | 263 |
| MS.gene044195.t1 | AT1G22880 | 48.476 | 328 | 155 | 7 | 24 | 349 | 8 | 323 | 4.73e-83 | 261 |
| MS.gene044195.t1 | AT4G24260 | 39.433 | 388 | 203 | 13 | 40 | 402 | 108 | 488 | 2.45e-55 | 193 |
| MS.gene044195.t1 | AT4G24260 | 41.390 | 331 | 162 | 11 | 40 | 342 | 108 | 434 | 1.12e-53 | 188 |
Find 116 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACAAGTTGATTACATTT+TGG | 0.156175 | 3.4:-76628899 | MS.gene044195:CDS |
| AGAACCAAATCCTAATATTT+TGG | 0.167708 | 3.4:-76628725 | MS.gene044195:CDS |
| CATACAACCAACGTGTTAAT+TGG | 0.167826 | 3.4:-76632357 | MS.gene044195:CDS |
| AAATATTAGGATTTGGTTCT+TGG | 0.200576 | 3.4:+76628728 | None:intergenic |
| ATGTAATGGAAGCAATTAAA+TGG | 0.203237 | 3.4:-76632051 | MS.gene044195:CDS |
| AACTCATGTTAAGTGGATTT+TGG | 0.205279 | 3.4:+76628875 | None:intergenic |
| ACCTCTATGATGCACCCTTT+TGG | 0.242199 | 3.4:+76628825 | None:intergenic |
| ATGAGTTACTTAGTGGGATA+TGG | 0.273448 | 3.4:-76628859 | MS.gene044195:CDS |
| GCAGGTGATCATGTGAAATT+TGG | 0.274678 | 3.4:-76632160 | MS.gene044195:CDS |
| TACTTTGAAGCACAACGTTC+TGG | 0.276345 | 3.4:-76632388 | MS.gene044195:CDS |
| ATTGTGCAGTTATTTGAGTT+TGG | 0.280930 | 3.4:-76630782 | MS.gene044195:intron |
| TTGTGCAGTTATTTGAGTTT+GGG | 0.294397 | 3.4:-76630781 | MS.gene044195:intron |
| ACCTCTGCCCACAACACATT+TGG | 0.300565 | 3.4:+76631995 | None:intergenic |
| CCAACCAAAATATTAGGATT+TGG | 0.302553 | 3.4:+76628721 | None:intergenic |
| ATATATAGAGAGTATTTAAA+AGG | 0.306750 | 3.4:+76628525 | None:intergenic |
| GTTAATTGGCGTCATCATTC+TGG | 0.309546 | 3.4:-76632343 | MS.gene044195:CDS |
| AAAGCTCCAACCAAAATATT+AGG | 0.310755 | 3.4:+76628715 | None:intergenic |
| CAGCTGCTTCCATTGTGTTT+AGG | 0.320538 | 3.4:-76631515 | MS.gene044195:CDS |
| TCAAAATTGTCTAGATTATC+AGG | 0.328331 | 3.4:+76628682 | None:intergenic |
| AGAGAGAATAAAGGGTTCAT+AGG | 0.328810 | 3.4:-76628784 | MS.gene044195:CDS |
| ATTTCTAATGCTCATACATT+TGG | 0.331259 | 3.4:-76630614 | MS.gene044195:CDS |
| GCACACAAGGGTATGATAAT+TGG | 0.347724 | 3.4:-76628759 | MS.gene044195:CDS |
| CAATTAACACGTTGGTTGTA+TGG | 0.354636 | 3.4:+76632358 | None:intergenic |
| CATGGAGTGCTATTGAGTTT+AGG | 0.363527 | 3.4:-76632105 | MS.gene044195:CDS |
| GTGACAATGATGTTTAAATC+TGG | 0.367337 | 3.4:+76632492 | None:intergenic |
| GCTCATACATTTGGTGGTAT+TGG | 0.372035 | 3.4:-76630605 | MS.gene044195:CDS |
| TTTCAGGTGGATTTGGTTGG+AGG | 0.401221 | 3.4:-76632193 | MS.gene044195:intron |
| TGTAATGGAAGCAATTAAAT+GGG | 0.406228 | 3.4:-76632050 | MS.gene044195:CDS |
| CCTCTGCCCACAACACATTT+GGG | 0.407042 | 3.4:+76631996 | None:intergenic |
| CAAAAGATCAATTGCCAAGA+TGG | 0.412945 | 3.4:-76628958 | MS.gene044195:CDS |
| GTATCATATAGAGAGAATAA+AGG | 0.414088 | 3.4:-76628793 | MS.gene044195:CDS |
| CTGGACGTTGCCAACAATAA+TGG | 0.415828 | 3.4:+76631625 | None:intergenic |
| CTTGAGGTTGTCATGTCCTC+TGG | 0.417866 | 3.4:+76631606 | None:intergenic |
| GTCAAAATATTCTTGTTTGT+CGG | 0.429086 | 3.4:+76630643 | None:intergenic |
| AAGATAGATGAGAAGAATCC+AGG | 0.433832 | 3.4:-76631573 | MS.gene044195:CDS |
| TTCAGGTGGATTTGGTTGGA+GGG | 0.437613 | 3.4:-76632192 | MS.gene044195:intron |
| TCATGCAAAGAGGGAATAGA+AGG | 0.439518 | 3.4:-76628582 | MS.gene044195:CDS |
| ATCCCAGCTGAATTCTGTTA+TGG | 0.440268 | 3.4:+76630577 | None:intergenic |
| ACTTTGAAGCACAACGTTCT+GGG | 0.441438 | 3.4:-76632387 | MS.gene044195:CDS |
| GGGAAATATGATGGAAGTGT+TGG | 0.451425 | 3.4:-76630746 | MS.gene044195:CDS |
| TATCATATAGAGAGAATAAA+GGG | 0.456692 | 3.4:-76628792 | MS.gene044195:CDS |
| TCTAATGCTCATACATTTGG+TGG | 0.457457 | 3.4:-76630611 | MS.gene044195:CDS |
| AGCTGGGATGTTAAGTATGC+TGG | 0.465855 | 3.4:-76630563 | MS.gene044195:CDS |
| ATGGGCCTAAGTACCCCAAA+AGG | 0.469761 | 3.4:-76628840 | MS.gene044195:CDS |
| ATACATTTGGTGGTATTGGT+TGG | 0.472675 | 3.4:-76630601 | MS.gene044195:CDS |
| TACTAGCCCAAATGTGTTGT+GGG | 0.473525 | 3.4:-76632002 | MS.gene044195:CDS |
| AGGCAAGAAATTGTTGAAGC+TGG | 0.479140 | 3.4:-76632085 | MS.gene044195:CDS |
| CCCAAATGTGTTGTGGGCAG+AGG | 0.481112 | 3.4:-76631996 | MS.gene044195:intron |
| ACTAAGTAACTCATGTTAAG+TGG | 0.486492 | 3.4:+76628868 | None:intergenic |
| GGTCCATAACAGAATTCAGC+TGG | 0.486609 | 3.4:-76630580 | MS.gene044195:CDS |
| CAAAATTGAGAATTTCATCA+TGG | 0.490347 | 3.4:+76628926 | None:intergenic |
| ACTTAACATGAGTTACTTAG+TGG | 0.491572 | 3.4:-76628866 | MS.gene044195:CDS |
| TGAGTTACTTAGTGGGATAT+GGG | 0.492298 | 3.4:-76628858 | MS.gene044195:CDS |
| TTGGTTGGAGCTTTGGTAGG+AGG | 0.493848 | 3.4:-76628706 | MS.gene044195:CDS |
| TGGAGAAACTGCTGCAGCTA+TGG | 0.496286 | 3.4:-76631538 | MS.gene044195:CDS |
| CATCATTCTGGTCTTACAGA+TGG | 0.500607 | 3.4:-76632331 | MS.gene044195:CDS |
| GAAGAATCCAGGTTCAGATC+TGG | 0.506230 | 3.4:-76631562 | MS.gene044195:CDS |
| ATTGTTGAAGCTGGTGAACT+TGG | 0.513050 | 3.4:-76632076 | MS.gene044195:CDS |
| TTACCTTTGATGCTAAAACT+TGG | 0.515672 | 3.4:+76630537 | None:intergenic |
| CTTACAGATGGTTTAGAACA+AGG | 0.516101 | 3.4:-76632319 | MS.gene044195:CDS |
| ATAATCAAAAGATTGTGTTA+TGG | 0.516983 | 3.4:+76632438 | None:intergenic |
| CATGGCCCACAATCCCATCT+TGG | 0.517673 | 3.4:+76628944 | None:intergenic |
| AGCTACTATGCGTCGGTGAG+TGG | 0.518978 | 3.4:-76630713 | MS.gene044195:CDS |
| GAGAGAATAAAGGGTTCATA+GGG | 0.518983 | 3.4:-76628783 | MS.gene044195:CDS |
| TTGCAAAATTCATGCAAAGA+GGG | 0.519154 | 3.4:-76628591 | MS.gene044195:CDS |
| AAAAGATCAATTGCCAAGAT+GGG | 0.520703 | 3.4:-76628957 | MS.gene044195:CDS |
| AATTGCCAAGATGGGATTGT+GGG | 0.521792 | 3.4:-76628949 | MS.gene044195:CDS |
| ATATAATACTGCACCATTAG+TGG | 0.523912 | 3.4:-76628620 | MS.gene044195:CDS |
| AAATACAGAGGGAAATATGA+TGG | 0.525154 | 3.4:-76630755 | MS.gene044195:CDS |
| GAGACACAGACCATTATTGT+TGG | 0.526224 | 3.4:-76631635 | MS.gene044195:CDS |
| CAAGGGTATGATAATTGGTA+TGG | 0.527762 | 3.4:-76628754 | MS.gene044195:CDS |
| TGTGCAGTTATTTGAGTTTG+GGG | 0.529149 | 3.4:-76630780 | MS.gene044195:intron |
| TGTGAAATTTGGTTTACCAA+TGG | 0.529922 | 3.4:-76632149 | MS.gene044195:CDS |
| AAAATATTCTTGTTTGTCGG+TGG | 0.547238 | 3.4:+76630646 | None:intergenic |
| TTTGCAAAATTCATGCAAAG+AGG | 0.550554 | 3.4:-76628592 | MS.gene044195:CDS |
| GATACATGGATGAGTTATTG+TGG | 0.552659 | 3.4:-76630691 | MS.gene044195:CDS |
| TATAATACTGCACCATTAGT+GGG | 0.560164 | 3.4:-76628619 | MS.gene044195:CDS |
| GTTGGAGGGTACTATGATGC+AGG | 0.563279 | 3.4:-76632178 | MS.gene044195:CDS |
| TGACAATGATGTTTAAATCT+GGG | 0.565379 | 3.4:+76632493 | None:intergenic |
| TGCGTCGGTGAGTGGATACA+TGG | 0.568122 | 3.4:-76630705 | MS.gene044195:CDS |
| AATGTAATCAACTTGTGACT+TGG | 0.573884 | 3.4:+76628903 | None:intergenic |
| GGGTTCATAGGGTGCACACA+AGG | 0.574402 | 3.4:-76628772 | MS.gene044195:CDS |
| ATACTAGCCCAAATGTGTTG+TGG | 0.577675 | 3.4:-76632003 | MS.gene044195:CDS |
| TCTCCAGCCAGATCTGAACC+TGG | 0.578429 | 3.4:+76631555 | None:intergenic |
| ATACATGGATGAGTTATTGT+GGG | 0.579757 | 3.4:-76630690 | MS.gene044195:CDS |
| TTACTGTCACAATGTTGTCA+TGG | 0.583673 | 3.4:-76632123 | MS.gene044195:CDS |
| TACAGATGGTTTAGAACAAG+GGG | 0.583836 | 3.4:-76632317 | MS.gene044195:intron |
| GCAAAGAGGGAATAGAAGGT+TGG | 0.590189 | 3.4:-76628578 | MS.gene044195:CDS |
| TATCTTAAAAGCTTGTCTTG+AGG | 0.590517 | 3.4:+76631590 | None:intergenic |
| AGTTATTGTGGGGAGCTATG+TGG | 0.591433 | 3.4:-76630679 | MS.gene044195:CDS |
| AATCCAGGTTCAGATCTGGC+TGG | 0.593866 | 3.4:-76631558 | MS.gene044195:CDS |
| CTTAACATGAGTTACTTAGT+GGG | 0.597597 | 3.4:-76628865 | MS.gene044195:CDS |
| ATTCTCTCTATATGATACAA+TGG | 0.597953 | 3.4:+76628798 | None:intergenic |
| CAATTGCCAAGATGGGATTG+TGG | 0.600603 | 3.4:-76628950 | MS.gene044195:CDS |
| ATTGTGACAGTAAATGCCAT+TGG | 0.602158 | 3.4:+76632133 | None:intergenic |
| TGGTGAACTTGGTCATGTAA+TGG | 0.602665 | 3.4:-76632065 | MS.gene044195:CDS |
| TGGGCCTAAGTACCCCAAAA+GGG | 0.608177 | 3.4:-76628839 | MS.gene044195:CDS |
| CTTACATAGAGTAATCCAGC+TGG | 0.611840 | 3.4:+76629060 | None:intergenic |
| TTACAGATGGTTTAGAACAA+GGG | 0.612255 | 3.4:-76632318 | MS.gene044195:CDS |
| AATGTGGAAAGAACACCAGC+TGG | 0.616199 | 3.4:-76629075 | MS.gene044195:CDS |
| CCCAAAAGGGTGCATCATAG+AGG | 0.625621 | 3.4:-76628826 | MS.gene044195:CDS |
| AGTTTGGGGACAAATACAGA+GGG | 0.630720 | 3.4:-76630766 | MS.gene044195:CDS |
| TTACTACTACCTGCTGAGCA+TGG | 0.641231 | 3.4:+76631457 | None:intergenic |
| GTCCATAACAGAATTCAGCT+GGG | 0.643895 | 3.4:-76630579 | MS.gene044195:CDS |
| GATGACGCCAATTAACACGT+TGG | 0.651812 | 3.4:+76632350 | None:intergenic |
| TTATTGTTGGCAACGTCCAG+AGG | 0.652974 | 3.4:-76631622 | MS.gene044195:CDS |
| AGTGAAGAGCTACTATGCGT+CGG | 0.655502 | 3.4:-76630720 | MS.gene044195:CDS |
| AAAAGTAGCTGAGAATAATG+TGG | 0.661774 | 3.4:+76631483 | None:intergenic |
| GAGTTTGGGGACAAATACAG+AGG | 0.667296 | 3.4:-76630767 | MS.gene044195:CDS |
| GAACAATTATGTGCAAACTG+AGG | 0.668349 | 3.4:-76628650 | MS.gene044195:CDS |
| GTAATGGAAGCAATTAAATG+GGG | 0.669304 | 3.4:-76632049 | MS.gene044195:CDS |
| AAACAATGGCAGCAGCAATG+TGG | 0.670730 | 3.4:-76629091 | MS.gene044195:CDS |
| GGTTCATAGGGTGCACACAA+GGG | 0.675227 | 3.4:-76628771 | MS.gene044195:CDS |
| TTGAAGCACAACGTTCTGGG+AGG | 0.691689 | 3.4:-76632384 | MS.gene044195:CDS |
| GATTACTCTATGTAAGACAG+TGG | 0.704386 | 3.4:-76629053 | MS.gene044195:CDS |
| TACATGGATGAGTTATTGTG+GGG | 0.766782 | 3.4:-76630689 | MS.gene044195:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAATAATTTATTATGTT+TGG | - | chr3.4:76629708-76629727 | MS.gene044195:intron | 10.0% |
| !!! | TACTAATATTTTTACTTAAT+TGG | + | chr3.4:76630210-76630229 | None:intergenic | 10.0% |
| !! | AAAATACAAACAAAACAAAA+GGG | - | chr3.4:76630562-76630581 | MS.gene044195:CDS | 15.0% |
| !! | TAAAATACAAACAAAACAAA+AGG | - | chr3.4:76630561-76630580 | MS.gene044195:CDS | 15.0% |
| !! | TATTAAAGTATGTAAAACAA+GGG | - | chr3.4:76629786-76629805 | MS.gene044195:intron | 15.0% |
| !!! | AAAGTTGAGATTTTTATTTT+TGG | - | chr3.4:76628852-76628871 | MS.gene044195:CDS | 15.0% |
| !!! | AAGTTGAGATTTTTATTTTT+GGG | - | chr3.4:76628853-76628872 | MS.gene044195:CDS | 15.0% |
| !!! | TTTTGATTGTGTTTTTTTTT+TGG | - | chr3.4:76629891-76629910 | MS.gene044195:intron | 15.0% |
| !! | AAAAGAACAACAAATATTTC+TGG | - | chr3.4:76631724-76631743 | MS.gene044195:intron | 20.0% |
| !! | ATAATCAAAAGATTGTGTTA+TGG | + | chr3.4:76628643-76628662 | None:intergenic | 20.0% |
| !! | GAAGTCAAAAATAAAATGAT+GGG | - | chr3.4:76630793-76630812 | MS.gene044195:intron | 20.0% |
| !! | GTATTAAAGTATGTAAAACA+AGG | - | chr3.4:76629785-76629804 | MS.gene044195:intron | 20.0% |
| !! | TAGACTATAGCTAATATAAA+TGG | - | chr3.4:76631065-76631084 | MS.gene044195:intron | 20.0% |
| !! | TATCATATAGAGAGAATAAA+GGG | - | chr3.4:76632286-76632305 | MS.gene044195:intron | 20.0% |
| !! | TGAAGTCAAAAATAAAATGA+TGG | - | chr3.4:76630792-76630811 | MS.gene044195:intron | 20.0% |
| !! | TTTAGAAGAAGAAAATTTCA+GGG | - | chr3.4:76631501-76631520 | MS.gene044195:CDS | 20.0% |
| !!! | AAGATTGTAAATAGCTATTT+TGG | - | chr3.4:76629810-76629829 | MS.gene044195:intron | 20.0% |
| !!! | ACTACAGTAAATAGTTATTT+TGG | + | chr3.4:76630067-76630086 | None:intergenic | 20.0% |
| !!! | ACTTTTGAAACTAAAGTAAA+AGG | + | chr3.4:76630842-76630861 | None:intergenic | 20.0% |
| !!! | GAAACAAAATTCTGAAATTA+AGG | - | chr3.4:76629398-76629417 | MS.gene044195:intron | 20.0% |
| !!! | GAAATTAAGGTTTTTTACTT+AGG | - | chr3.4:76629411-76629430 | MS.gene044195:intron | 20.0% |
| !!! | TACTACACTATCAATTTTAA+AGG | - | chr3.4:76630140-76630159 | MS.gene044195:intron | 20.0% |
| !!! | TACTAGTAAACTTTTACATA+AGG | + | chr3.4:76631824-76631843 | None:intergenic | 20.0% |
| !!! | TATCATTTGATTTGATTTGA+TGG | - | chr3.4:76630866-76630885 | MS.gene044195:intron | 20.0% |
| !!! | TTCAAACATGTCAATTTTAT+AGG | - | chr3.4:76630639-76630658 | MS.gene044195:CDS | 20.0% |
| !!! | TTCTAGTATTTTATTTGTGT+TGG | - | chr3.4:76630710-76630729 | MS.gene044195:CDS | 20.0% |
| !!! | TTTCATTTTCTTGATTTTGA+TGG | - | chr3.4:76628805-76628824 | MS.gene044195:CDS | 20.0% |
| ! | AAAAAATAACAAGTGGATCA+AGG | + | chr3.4:76631610-76631629 | None:intergenic | 25.0% |
| ! | AAAAATAACAAGTGGATCAA+GGG | + | chr3.4:76631609-76631628 | None:intergenic | 25.0% |
| ! | ACTATCCAAAAAATAACAAG+TGG | + | chr3.4:76631617-76631636 | None:intergenic | 25.0% |
| ! | AGACAAAAAAGAGTGATTAA+AGG | + | chr3.4:76630591-76630610 | None:intergenic | 25.0% |
| ! | ATCTAAGGGATATTGTTAAT+AGG | - | chr3.4:76630895-76630914 | MS.gene044195:intron | 25.0% |
| ! | ATTCTCTCTATATGATACAA+TGG | + | chr3.4:76632283-76632302 | None:intergenic | 25.0% |
| ! | ATTTCTAATGCTCATACATT+TGG | - | chr3.4:76630464-76630483 | MS.gene044195:intron | 25.0% |
| ! | CAAAATTGAGAATTTCATCA+TGG | + | chr3.4:76632155-76632174 | None:intergenic | 25.0% |
| ! | GTATCATATAGAGAGAATAA+AGG | - | chr3.4:76632285-76632304 | MS.gene044195:intron | 25.0% |
| ! | GTTTAGAAGAAGAAAATTTC+AGG | - | chr3.4:76631500-76631519 | MS.gene044195:CDS | 25.0% |
| ! | TACTTGTCTCTTAAAGTTAA+AGG | + | chr3.4:76629768-76629787 | None:intergenic | 25.0% |
| ! | TCAAAATTGTCTAGATTATC+AGG | + | chr3.4:76632399-76632418 | None:intergenic | 25.0% |
| ! | TGACAATGATGTTTAAATCT+GGG | + | chr3.4:76628588-76628607 | None:intergenic | 25.0% |
| ! | TGACTAACAAAACATATAAC+AGG | + | chr3.4:76629945-76629964 | None:intergenic | 25.0% |
| ! | TGCATATATAGAATAGTCAT+TGG | + | chr3.4:76631479-76631498 | None:intergenic | 25.0% |
| ! | TTTCTTAAAGCCCAAAATAA+AGG | + | chr3.4:76631643-76631662 | None:intergenic | 25.0% |
| !! | AGAACCAAATCCTAATATTT+TGG | - | chr3.4:76632353-76632372 | MS.gene044195:CDS | 25.0% |
| !! | AGAATAGTCATTGGTTAATA+AGG | + | chr3.4:76631470-76631489 | None:intergenic | 25.0% |
| !! | ATGTAATGGAAGCAATTAAA+TGG | - | chr3.4:76629027-76629046 | MS.gene044195:CDS | 25.0% |
| !! | ATGTACATTTGAAGTGATAT+TGG | - | chr3.4:76631781-76631800 | MS.gene044195:intron | 25.0% |
| !! | GTCAAAATATTCTTGTTTGT+CGG | + | chr3.4:76630438-76630457 | None:intergenic | 25.0% |
| !! | TGATAATCTAGACAATTTTG+AGG | - | chr3.4:76632398-76632417 | MS.gene044195:CDS | 25.0% |
| !! | TGTAATGGAAGCAATTAAAT+GGG | - | chr3.4:76629028-76629047 | MS.gene044195:CDS | 25.0% |
| !! | TGTACATTTGAAGTGATATT+GGG | - | chr3.4:76631782-76631801 | MS.gene044195:intron | 25.0% |
| !! | TTAGCTATAGTCTATTCTTT+TGG | + | chr3.4:76631059-76631078 | None:intergenic | 25.0% |
| !!! | AAATATTAGGATTTGGTTCT+TGG | + | chr3.4:76632353-76632372 | None:intergenic | 25.0% |
| !!! | AATTTTAAAGGCAAATAGTG+GGG | - | chr3.4:76630152-76630171 | MS.gene044195:intron | 25.0% |
| !!! | ACACTTTTTATGTTTTCTTC+AGG | - | chr3.4:76631370-76631389 | MS.gene044195:intron | 25.0% |
| !!! | ACTTGTTATTTTTTGGATAG+TGG | - | chr3.4:76631616-76631635 | MS.gene044195:CDS | 25.0% |
| !!! | ATTAAGGTTTTTTACTTAGG+TGG | - | chr3.4:76629414-76629433 | MS.gene044195:intron | 25.0% |
| !!! | ATTTGTTTTCCTAAACACAA+TGG | + | chr3.4:76629575-76629594 | None:intergenic | 25.0% |
| !!! | CAATTTTAAAGGCAAATAGT+GGG | - | chr3.4:76630151-76630170 | MS.gene044195:intron | 25.0% |
| !!! | CACTTTTTATGTTTTCTTCA+GGG | - | chr3.4:76631371-76631390 | MS.gene044195:intron | 25.0% |
| !!! | CTTGTTATTTTTTGGATAGT+GGG | - | chr3.4:76631617-76631636 | MS.gene044195:CDS | 25.0% |
| !!! | TCAATTTTAAAGGCAAATAG+TGG | - | chr3.4:76630150-76630169 | MS.gene044195:intron | 25.0% |
| !!! | TCACAAGTTGATTACATTTT+GGG | - | chr3.4:76632180-76632199 | MS.gene044195:CDS | 25.0% |
| !!! | TGTTGTTCTTTTAGAAATGT+GGG | + | chr3.4:76631716-76631735 | None:intergenic | 25.0% |
| !!! | TTAAGGTTTTTTACTTAGGT+GGG | - | chr3.4:76629415-76629434 | MS.gene044195:intron | 25.0% |
| !!! | TTGATCCACTTGTTATTTTT+TGG | - | chr3.4:76631609-76631628 | MS.gene044195:CDS | 25.0% |
| !!! | TTGGAATTTTGACATATTCA+TGG | - | chr3.4:76630009-76630028 | MS.gene044195:intron | 25.0% |
| !!! | TTGTTGTTCTTTTAGAAATG+TGG | + | chr3.4:76631717-76631736 | None:intergenic | 25.0% |
| AAAAGATCAATTGCCAAGAT+GGG | - | chr3.4:76632121-76632140 | MS.gene044195:CDS | 30.0% | |
| AAAAGTAGCTGAGAATAATG+TGG | + | chr3.4:76629598-76629617 | None:intergenic | 30.0% | |
| AAAGCTCCAACCAAAATATT+AGG | + | chr3.4:76632366-76632385 | None:intergenic | 30.0% | |
| AAATACAGAGGGAAATATGA+TGG | - | chr3.4:76630323-76630342 | MS.gene044195:intron | 30.0% | |
| AATGTAATCAACTTGTGACT+TGG | + | chr3.4:76632178-76632197 | None:intergenic | 30.0% | |
| ACCATTGAAACTTCAACATT+TGG | + | chr3.4:76631023-76631042 | None:intergenic | 30.0% | |
| ACTAAGTAACTCATGTTAAG+TGG | + | chr3.4:76632213-76632232 | None:intergenic | 30.0% | |
| ACTTAACATGAGTTACTTAG+TGG | - | chr3.4:76632212-76632231 | MS.gene044195:intron | 30.0% | |
| AGGGATATTGTTAATAGGAT+AGG | - | chr3.4:76630900-76630919 | MS.gene044195:intron | 30.0% | |
| ATACATGGATGAGTTATTGT+GGG | - | chr3.4:76630388-76630407 | MS.gene044195:intron | 30.0% | |
| ATATAATACTGCACCATTAG+TGG | - | chr3.4:76632458-76632477 | MS.gene044195:CDS | 30.0% | |
| ATTATGCATTCACACTTATC+AGG | + | chr3.4:76630104-76630123 | None:intergenic | 30.0% | |
| ATTTGATGGAGCAATATCTA+AGG | - | chr3.4:76630880-76630899 | MS.gene044195:intron | 30.0% | |
| CCAACCAAAATATTAGGATT+TGG | + | chr3.4:76632360-76632379 | None:intergenic | 30.0% | |
| CTATCACAGTTCAATTAAAG+TGG | - | chr3.4:76630979-76630998 | MS.gene044195:intron | 30.0% | |
| CTCTTTGATTAGTAATCTCA+TGG | + | chr3.4:76629975-76629994 | None:intergenic | 30.0% | |
| CTTAACATGAGTTACTTAGT+GGG | - | chr3.4:76632213-76632232 | MS.gene044195:intron | 30.0% | |
| GAGAAATAAGCCATTGAAAA+AGG | + | chr3.4:76630740-76630759 | None:intergenic | 30.0% | |
| GTGAATATAGCACAATTTAG+AGG | + | chr3.4:76629647-76629666 | None:intergenic | 30.0% | |
| GTGACAATGATGTTTAAATC+TGG | + | chr3.4:76628589-76628608 | None:intergenic | 30.0% | |
| TAATGCACAATGATTGATAG+TGG | - | chr3.4:76631544-76631563 | MS.gene044195:CDS | 30.0% | |
| TATAATACTGCACCATTAGT+GGG | - | chr3.4:76632459-76632478 | MS.gene044195:CDS | 30.0% | |
| TATCTTAAAAGCTTGTCTTG+AGG | + | chr3.4:76629491-76629510 | None:intergenic | 30.0% | |
| TCATGTCTCAACAAAAACAA+TGG | - | chr3.4:76631973-76631992 | MS.gene044195:intron | 30.0% | |
| TCTCAAATTATTAGCAGTGT+GGG | + | chr3.4:76629172-76629191 | None:intergenic | 30.0% | |
| TTACCTTTGATGCTAAAACT+TGG | + | chr3.4:76630544-76630563 | None:intergenic | 30.0% | |
| TTCTCAAATTATTAGCAGTG+TGG | + | chr3.4:76629173-76629192 | None:intergenic | 30.0% | |
| TTGCAAAATTCATGCAAAGA+GGG | - | chr3.4:76632487-76632506 | MS.gene044195:CDS | 30.0% | |
| TTGTGCTATATTCACTATAG+TGG | - | chr3.4:76629652-76629671 | MS.gene044195:intron | 30.0% | |
| TTTGATGGAGCAATATCTAA+GGG | - | chr3.4:76630881-76630900 | MS.gene044195:intron | 30.0% | |
| TTTGCAAAATTCATGCAAAG+AGG | - | chr3.4:76632486-76632505 | MS.gene044195:CDS | 30.0% | |
| ! | AAAATATTCTTGTTTGTCGG+TGG | + | chr3.4:76630435-76630454 | None:intergenic | 30.0% |
| ! | AAGGTGCTTAAAAATGAAGT+GGG | + | chr3.4:76629749-76629768 | None:intergenic | 30.0% |
| ! | ATGTTAGTAAAGCATTATGC+AGG | + | chr3.4:76630773-76630792 | None:intergenic | 30.0% |
| ! | ATTGTGCAGTTATTTGAGTT+TGG | - | chr3.4:76630296-76630315 | MS.gene044195:intron | 30.0% |
| ! | GATGGGTTTAAGACTTAATT+TGG | - | chr3.4:76630810-76630829 | MS.gene044195:intron | 30.0% |
| ! | GTAACTTTTGCAGTTTTTGA+TGG | - | chr3.4:76631882-76631901 | MS.gene044195:intron | 30.0% |
| ! | GTAATGGAAGCAATTAAATG+GGG | - | chr3.4:76629029-76629048 | MS.gene044195:CDS | 30.0% |
| ! | TGTGAAATTTGGTTTACCAA+TGG | - | chr3.4:76628929-76628948 | MS.gene044195:CDS | 30.0% |
| ! | TTACAGATGGTTTAGAACAA+GGG | - | chr3.4:76628760-76628779 | MS.gene044195:CDS | 30.0% |
| ! | TTGTGCAGTTATTTGAGTTT+GGG | - | chr3.4:76630297-76630316 | MS.gene044195:intron | 30.0% |
| ! | TTTCCAATTTTTGAACTTCC+TGG | - | chr3.4:76629350-76629369 | MS.gene044195:intron | 30.0% |
| !! | AAAGGTGCTTAAAAATGAAG+TGG | + | chr3.4:76629750-76629769 | None:intergenic | 30.0% |
| !! | AACTCATGTTAAGTGGATTT+TGG | + | chr3.4:76632206-76632225 | None:intergenic | 30.0% |
| !! | TAGACAATTTTGAGGATCAA+AGG | - | chr3.4:76632406-76632425 | MS.gene044195:CDS | 30.0% |
| !! | TATTTCTGGAAATGTACTTC+TGG | - | chr3.4:76631738-76631757 | MS.gene044195:intron | 30.0% |
| !! | TGATCTTTTGATTCTCACTT+TGG | + | chr3.4:76632110-76632129 | None:intergenic | 30.0% |
| !!! | CCAAATCCTAATATTTTGGT+TGG | - | chr3.4:76632357-76632376 | MS.gene044195:CDS | 30.0% |
| !!! | GTCACAAGTTGATTACATTT+TGG | - | chr3.4:76632179-76632198 | MS.gene044195:CDS | 30.0% |
| !!! | TAATATTTTGGTTGGAGCTT+TGG | - | chr3.4:76632365-76632384 | MS.gene044195:CDS | 30.0% |
| !!! | TGTTGGTTTTCCTTTTTCAA+TGG | - | chr3.4:76630727-76630746 | MS.gene044195:CDS | 30.0% |
| !!! | TTTTGGGTTTGTGTTTTTTC+AGG | - | chr3.4:76628869-76628888 | MS.gene044195:CDS | 30.0% |
| AAGATAGATGAGAAGAATCC+AGG | - | chr3.4:76629505-76629524 | MS.gene044195:intron | 35.0% | |
| AAGTGTGTATTCCATGAATG+TGG | + | chr3.4:76631356-76631375 | None:intergenic | 35.0% | |
| ACAGTTCAATTAAAGTGGTC+TGG | - | chr3.4:76630984-76631003 | MS.gene044195:intron | 35.0% | |
| ACTATAGTGGCAATAGTGTT+TGG | - | chr3.4:76629665-76629684 | MS.gene044195:intron | 35.0% | |
| AGAGAGAATAAAGGGTTCAT+AGG | - | chr3.4:76632294-76632313 | MS.gene044195:intron | 35.0% | |
| AGGGTTTGCAATAAATCAGT+TGG | - | chr3.4:76631390-76631409 | MS.gene044195:intron | 35.0% | |
| AGTAAAAGCAAAAAGCAGCA+TGG | + | chr3.4:76630666-76630685 | None:intergenic | 35.0% | |
| AGTGTGTATTCCATGAATGT+GGG | + | chr3.4:76631355-76631374 | None:intergenic | 35.0% | |
| ATGAGTTACTTAGTGGGATA+TGG | - | chr3.4:76632219-76632238 | MS.gene044195:intron | 35.0% | |
| ATTAAAGTGGTCTGGCTATA+TGG | - | chr3.4:76630992-76631011 | MS.gene044195:intron | 35.0% | |
| ATTGTGACAGTAAATGCCAT+TGG | + | chr3.4:76628948-76628967 | None:intergenic | 35.0% | |
| CAAAAGATCAATTGCCAAGA+TGG | - | chr3.4:76632120-76632139 | MS.gene044195:CDS | 35.0% | |
| CAACCAGGAAGTTCAAAAAT+TGG | + | chr3.4:76629356-76629375 | None:intergenic | 35.0% | |
| CACTTATCAGGAACATTACT+TGG | + | chr3.4:76630092-76630111 | None:intergenic | 35.0% | |
| CATACAACCAACGTGTTAAT+TGG | - | chr3.4:76628721-76628740 | MS.gene044195:CDS | 35.0% | |
| CATTAATCATCACATCAACC+AGG | + | chr3.4:76629371-76629390 | None:intergenic | 35.0% | |
| GAACAATTATGTGCAAACTG+AGG | - | chr3.4:76632428-76632447 | MS.gene044195:CDS | 35.0% | |
| GAGAGAATAAAGGGTTCATA+GGG | - | chr3.4:76632295-76632314 | MS.gene044195:intron | 35.0% | |
| GATACATGGATGAGTTATTG+TGG | - | chr3.4:76630387-76630406 | MS.gene044195:intron | 35.0% | |
| GATTACTCTATGTAAGACAG+TGG | - | chr3.4:76632025-76632044 | MS.gene044195:CDS | 35.0% | |
| GCCAAATGTTGAAGTTTCAA+TGG | - | chr3.4:76631019-76631038 | MS.gene044195:intron | 35.0% | |
| TACATGGATGAGTTATTGTG+GGG | - | chr3.4:76630389-76630408 | MS.gene044195:intron | 35.0% | |
| TCAATCAGATAAGCAATCAG+TGG | + | chr3.4:76631269-76631288 | None:intergenic | 35.0% | |
| TCTAATGCTCATACATTTGG+TGG | - | chr3.4:76630467-76630486 | MS.gene044195:intron | 35.0% | |
| TGAGTTACTTAGTGGGATAT+GGG | - | chr3.4:76632220-76632239 | MS.gene044195:intron | 35.0% | |
| TTACTGTCACAATGTTGTCA+TGG | - | chr3.4:76628955-76628974 | MS.gene044195:CDS | 35.0% | |
| TTTGAATTAAGCCAACCTAG+AGG | + | chr3.4:76630625-76630644 | None:intergenic | 35.0% | |
| TTTGCAAAAACTCCCACTAA+TGG | + | chr3.4:76632474-76632493 | None:intergenic | 35.0% | |
| ! | AAAACTGCTAGAGCACATTT+TGG | - | chr3.4:76631422-76631441 | MS.gene044195:intron | 35.0% |
| ! | AAGAGACTCGTGAATGTTTT+TGG | - | chr3.4:76629990-76630009 | MS.gene044195:intron | 35.0% |
| ! | CAAGGGTATGATAATTGGTA+TGG | - | chr3.4:76632324-76632343 | MS.gene044195:CDS | 35.0% |
| ! | CAATTAACACGTTGGTTGTA+TGG | + | chr3.4:76628723-76628742 | None:intergenic | 35.0% |
| ! | CTGGTTGATGTGATGATTAA+TGG | - | chr3.4:76629369-76629388 | MS.gene044195:intron | 35.0% |
| ! | CTTACAGATGGTTTAGAACA+AGG | - | chr3.4:76628759-76628778 | MS.gene044195:CDS | 35.0% |
| ! | GACATATTCATGGACTATAG+TGG | - | chr3.4:76630019-76630038 | MS.gene044195:intron | 35.0% |
| ! | GCTATAGTCTATTCTTTTGG+AGG | + | chr3.4:76631056-76631075 | None:intergenic | 35.0% |
| ! | TACAGATGGTTTAGAACAAG+GGG | - | chr3.4:76628761-76628780 | MS.gene044195:CDS | 35.0% |
| ! | TGTGCAGTTATTTGAGTTTG+GGG | - | chr3.4:76630298-76630317 | MS.gene044195:intron | 35.0% |
| !! | ACATGCATTGACTGTCAAAA+TGG | - | chr3.4:76631231-76631250 | MS.gene044195:intron | 35.0% |
| !! | ATACATTTGGTGGTATTGGT+TGG | - | chr3.4:76630477-76630496 | MS.gene044195:intron | 35.0% |
| !! | ATAGCTTGTGAGACATTTTG+AGG | - | chr3.4:76629275-76629294 | MS.gene044195:intron | 35.0% |
| !! | TCTCCAAGTTTTAGCATCAA+AGG | - | chr3.4:76630538-76630557 | MS.gene044195:intron | 35.0% |
| !!! | TAGAGCACATTTTGGTTACT+TGG | - | chr3.4:76631430-76631449 | MS.gene044195:intron | 35.0% |
| !!! | TGCTGCTTTTTGCTTTTACT+TGG | - | chr3.4:76630666-76630685 | MS.gene044195:CDS | 35.0% |
| !!! | TGTGTTTTTTCAGGTGGATT+TGG | - | chr3.4:76628878-76628897 | MS.gene044195:CDS | 35.0% |
| !!! | TTTTTTACTTAGGTGGGTGA+TGG | - | chr3.4:76629421-76629440 | MS.gene044195:intron | 35.0% |
| !!! | TTTTTTCAGGTGGATTTGGT+TGG | - | chr3.4:76628882-76628901 | MS.gene044195:CDS | 35.0% |
| AATTGCCAAGATGGGATTGT+GGG | - | chr3.4:76632129-76632148 | MS.gene044195:CDS | 40.0% | |
| AGGCAAGAAATTGTTGAAGC+TGG | - | chr3.4:76628993-76629012 | MS.gene044195:CDS | 40.0% | |
| AGTGGCAATAGTGTTTGGTT+TGG | - | chr3.4:76629670-76629689 | MS.gene044195:intron | 40.0% | |
| AGTTTGGGGACAAATACAGA+GGG | - | chr3.4:76630312-76630331 | MS.gene044195:intron | 40.0% | |
| ATACTAGCCCAAATGTGTTG+TGG | - | chr3.4:76629075-76629094 | MS.gene044195:CDS | 40.0% | |
| ATCCCAGCTGAATTCTGTTA+TGG | + | chr3.4:76630504-76630523 | None:intergenic | 40.0% | |
| ATTGTTGAAGCTGGTGAACT+TGG | - | chr3.4:76629002-76629021 | MS.gene044195:CDS | 40.0% | |
| CATGAGGCAAGCTATTACTA+TGG | - | chr3.4:76631322-76631341 | MS.gene044195:intron | 40.0% | |
| CTTACATAGAGTAATCCAGC+TGG | + | chr3.4:76632021-76632040 | None:intergenic | 40.0% | |
| GAGACACAGACCATTATTGT+TGG | - | chr3.4:76629443-76629462 | MS.gene044195:intron | 40.0% | |
| GATTAGACATGTCACAGTGT+CGG | + | chr3.4:76629236-76629255 | None:intergenic | 40.0% | |
| GCAGGTGATCATGTGAAATT+TGG | - | chr3.4:76628918-76628937 | MS.gene044195:CDS | 40.0% | |
| GGCATTGTCTCGCATATTTA+AGG | - | chr3.4:76630040-76630059 | MS.gene044195:intron | 40.0% | |
| GTCCATAACAGAATTCAGCT+GGG | - | chr3.4:76630499-76630518 | MS.gene044195:intron | 40.0% | |
| GTGTGTATTCCATGAATGTG+GGG | + | chr3.4:76631354-76631373 | None:intergenic | 40.0% | |
| GTTAATTGGCGTCATCATTC+TGG | - | chr3.4:76628735-76628754 | MS.gene044195:CDS | 40.0% | |
| TACTAGCCCAAATGTGTTGT+GGG | - | chr3.4:76629076-76629095 | MS.gene044195:CDS | 40.0% | |
| TAGACTGCATCAATTGCACA+TGG | + | chr3.4:76630962-76630981 | None:intergenic | 40.0% | |
| TCATGCAAAGAGGGAATAGA+AGG | - | chr3.4:76632496-76632515 | MS.gene044195:CDS | 40.0% | |
| TGGTGAACTTGGTCATGTAA+TGG | - | chr3.4:76629013-76629032 | MS.gene044195:CDS | 40.0% | |
| ! | CATGGAGTGCTATTGAGTTT+AGG | - | chr3.4:76628973-76628992 | MS.gene044195:CDS | 40.0% |
| ! | GAAAGTTGATCCCTTTGCAT+AGG | + | chr3.4:76631687-76631706 | None:intergenic | 40.0% |
| ! | GCACACAAGGGTATGATAAT+TGG | - | chr3.4:76632319-76632338 | MS.gene044195:CDS | 40.0% |
| ! | GCTCATACATTTGGTGGTAT+TGG | - | chr3.4:76630473-76630492 | MS.gene044195:intron | 40.0% |
| ! | GGGAAATATGATGGAAGTGT+TGG | - | chr3.4:76630332-76630351 | MS.gene044195:intron | 40.0% |
| ! | GTGCTCTAGCAGTTTTACAA+TGG | + | chr3.4:76631418-76631437 | None:intergenic | 40.0% |
| ! | TTCAATGGCTTATTTCTCGC+TGG | - | chr3.4:76630742-76630761 | MS.gene044195:CDS | 40.0% |
| ! | TTGCCTCATGATGAGTTGAA+GGG | + | chr3.4:76631312-76631331 | None:intergenic | 40.0% |
| !! | ACTTTGAAGCACAACGTTCT+GGG | - | chr3.4:76628691-76628710 | MS.gene044195:CDS | 40.0% |
| !! | CATCATTCTGGTCTTACAGA+TGG | - | chr3.4:76628747-76628766 | MS.gene044195:CDS | 40.0% |
| !! | CTTTTAGAAATGTGGGAGTG+TGG | + | chr3.4:76631709-76631728 | None:intergenic | 40.0% |
| !! | GCACAATGATTGATAGTGGA+TGG | - | chr3.4:76631548-76631567 | MS.gene044195:CDS | 40.0% |
| !! | TACTTTGAAGCACAACGTTC+TGG | - | chr3.4:76628690-76628709 | MS.gene044195:CDS | 40.0% |
| !!! | ATTTTGGTTGGAGCTTTGGT+AGG | - | chr3.4:76632369-76632388 | MS.gene044195:CDS | 40.0% |
| !!! | GGATAGTGGGCCTTTATTTT+GGG | - | chr3.4:76631630-76631649 | MS.gene044195:CDS | 40.0% |
| !!! | TGGATAGTGGGCCTTTATTT+TGG | - | chr3.4:76631629-76631648 | MS.gene044195:CDS | 40.0% |
| !!! | TGGGTTTGTGTTTTTTCAGG+TGG | - | chr3.4:76628872-76628891 | MS.gene044195:CDS | 40.0% |
| AAACAATGGCAGCAGCAATG+TGG | - | chr3.4:76631987-76632006 | MS.gene044195:intron | 45.0% | |
| AATGTGGAAAGAACACCAGC+TGG | - | chr3.4:76632003-76632022 | MS.gene044195:CDS | 45.0% | |
| ACTGTGACATGTCTAATCCG+AGG | - | chr3.4:76629238-76629257 | MS.gene044195:intron | 45.0% | |
| AGCTGGGATGTTAAGTATGC+TGG | - | chr3.4:76630515-76630534 | MS.gene044195:intron | 45.0% | |
| AGTGAAGAGCTACTATGCGT+CGG | - | chr3.4:76630358-76630377 | MS.gene044195:intron | 45.0% | |
| AGTTATTGTGGGGAGCTATG+TGG | - | chr3.4:76630399-76630418 | MS.gene044195:intron | 45.0% | |
| CAACCCTTCAACTCATCATG+AGG | - | chr3.4:76631306-76631325 | MS.gene044195:intron | 45.0% | |
| CAATTGCCAAGATGGGATTG+TGG | - | chr3.4:76632128-76632147 | MS.gene044195:CDS | 45.0% | |
| CAGCTGCTTCCATTGTGTTT+AGG | - | chr3.4:76629563-76629582 | MS.gene044195:intron | 45.0% | |
| CATTTCACGTTCCTCTAGGT+TGG | - | chr3.4:76630611-76630630 | MS.gene044195:CDS | 45.0% | |
| CTGGACGTTGCCAACAATAA+TGG | + | chr3.4:76629456-76629475 | None:intergenic | 45.0% | |
| GAAGAATCCAGGTTCAGATC+TGG | - | chr3.4:76629516-76629535 | MS.gene044195:intron | 45.0% | |
| GAGTTTGGGGACAAATACAG+AGG | - | chr3.4:76630311-76630330 | MS.gene044195:intron | 45.0% | |
| GATCCCTTTGCATAGGTAGA+AGG | + | chr3.4:76631680-76631699 | None:intergenic | 45.0% | |
| GATGACGCCAATTAACACGT+TGG | + | chr3.4:76628731-76628750 | None:intergenic | 45.0% | |
| GCAAAGAGGGAATAGAAGGT+TGG | - | chr3.4:76632500-76632519 | MS.gene044195:CDS | 45.0% | |
| GGTCCATAACAGAATTCAGC+TGG | - | chr3.4:76630498-76630517 | MS.gene044195:intron | 45.0% | |
| GTCTCACAAGCTATGAAGCA+CGG | + | chr3.4:76629269-76629288 | None:intergenic | 45.0% | |
| GTCTCATTTCACGTTCCTCT+AGG | - | chr3.4:76630607-76630626 | MS.gene044195:CDS | 45.0% | |
| GTGCCTTCTACCTATGCAAA+GGG | - | chr3.4:76631674-76631693 | MS.gene044195:intron | 45.0% | |
| GTGGGGTATGAAGTATGAAC+TGG | - | chr3.4:76630169-76630188 | MS.gene044195:intron | 45.0% | |
| TAACAAGTGGATCAAGGGCA+AGG | + | chr3.4:76631604-76631623 | None:intergenic | 45.0% | |
| TGTGCCTTCTACCTATGCAA+AGG | - | chr3.4:76631673-76631692 | MS.gene044195:intron | 45.0% | |
| TTACTACTACCTGCTGAGCA+TGG | + | chr3.4:76629624-76629643 | None:intergenic | 45.0% | |
| TTATTGTTGGCAACGTCCAG+AGG | - | chr3.4:76629456-76629475 | MS.gene044195:intron | 45.0% | |
| ! | ACCTCTATGATGCACCCTTT+TGG | + | chr3.4:76632256-76632275 | None:intergenic | 45.0% |
| ! | CCTCTATGATGCACCCTTTT+GGG | + | chr3.4:76632255-76632274 | None:intergenic | 45.0% |
| ! | CTCTATGATGCACCCTTTTG+GGG | + | chr3.4:76632254-76632273 | None:intergenic | 45.0% |
| ! | CTTGCCTCATGATGAGTTGA+AGG | + | chr3.4:76631313-76631332 | None:intergenic | 45.0% |
| ! | TTCAGGTGGATTTGGTTGGA+GGG | - | chr3.4:76628886-76628905 | MS.gene044195:CDS | 45.0% |
| ! | TTTCAGGTGGATTTGGTTGG+AGG | - | chr3.4:76628885-76628904 | MS.gene044195:CDS | 45.0% |
| !! | GGCAATAGTGTTTGGTTTGG+TGG | - | chr3.4:76629673-76629692 | MS.gene044195:intron | 45.0% |
| AATCCAGGTTCAGATCTGGC+TGG | - | chr3.4:76629520-76629539 | MS.gene044195:intron | 50.0% | |
| ACCTCTGCCCACAACACATT+TGG | + | chr3.4:76629086-76629105 | None:intergenic | 50.0% | |
| ATGGGCCTAAGTACCCCAAA+AGG | - | chr3.4:76632238-76632257 | MS.gene044195:intron | 50.0% | |
| CCTCTGCCCACAACACATTT+GGG | + | chr3.4:76629085-76629104 | None:intergenic | 50.0% | |
| CTTGAGGTTGTCATGTCCTC+TGG | + | chr3.4:76629475-76629494 | None:intergenic | 50.0% | |
| GGTTCATAGGGTGCACACAA+GGG | - | chr3.4:76632307-76632326 | MS.gene044195:intron | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | + | chr3.4:76629258-76629277 | None:intergenic | 50.0% | |
| TGGAGAAACTGCTGCAGCTA+TGG | - | chr3.4:76629540-76629559 | MS.gene044195:intron | 50.0% | |
| TGGGCCTAAGTACCCCAAAA+GGG | - | chr3.4:76632239-76632258 | MS.gene044195:intron | 50.0% | |
| ! | ACTTTTGCACCATGCTCAGC+AGG | - | chr3.4:76629612-76629631 | MS.gene044195:intron | 50.0% |
| ! | CCCAAAAGGGTGCATCATAG+AGG | - | chr3.4:76632252-76632271 | MS.gene044195:intron | 50.0% |
| ! | TTGAAGCACAACGTTCTGGG+AGG | - | chr3.4:76628694-76628713 | MS.gene044195:CDS | 50.0% |
| ! | TTGGTTGGAGCTTTGGTAGG+AGG | - | chr3.4:76632372-76632391 | MS.gene044195:CDS | 50.0% |
| !! | GTTGGAGGGTACTATGATGC+AGG | - | chr3.4:76628900-76628919 | MS.gene044195:CDS | 50.0% |
| !!! | TGCACCCTTTTGGGGTACTT+AGG | + | chr3.4:76632246-76632265 | None:intergenic | 50.0% |
| CATGGCCCACAATCCCATCT+TGG | + | chr3.4:76632137-76632156 | None:intergenic | 55.0% | |
| CCCAAATGTGTTGTGGGCAG+AGG | - | chr3.4:76629082-76629101 | MS.gene044195:CDS | 55.0% | |
| GGGTTCATAGGGTGCACACA+AGG | - | chr3.4:76632306-76632325 | MS.gene044195:intron | 55.0% | |
| TCTCCAGCCAGATCTGAACC+TGG | + | chr3.4:76629526-76629545 | None:intergenic | 55.0% | |
| TGGTGTGTGCCCCACATTCA+TGG | - | chr3.4:76631342-76631361 | MS.gene044195:intron | 55.0% | |
| ! | AGCTACTATGCGTCGGTGAG+TGG | - | chr3.4:76630365-76630384 | MS.gene044195:intron | 55.0% |
| ! | TGCGTCGGTGAGTGGATACA+TGG | - | chr3.4:76630373-76630392 | MS.gene044195:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 76628540 | 76632560 | 76628540 | ID=MS.gene044195 |
| chr3.4 | mRNA | 76628540 | 76632560 | 76628540 | ID=MS.gene044195.t1;Parent=MS.gene044195 |
| chr3.4 | exon | 76632318 | 76632560 | 76632318 | ID=MS.gene044195.t1.exon1;Parent=MS.gene044195.t1 |
| chr3.4 | CDS | 76632318 | 76632560 | 76632318 | ID=cds.MS.gene044195.t1;Parent=MS.gene044195.t1 |
| chr3.4 | exon | 76631997 | 76632209 | 76631997 | ID=MS.gene044195.t1.exon2;Parent=MS.gene044195.t1 |
| chr3.4 | CDS | 76631997 | 76632209 | 76631997 | ID=cds.MS.gene044195.t1;Parent=MS.gene044195.t1 |
| chr3.4 | exon | 76631467 | 76631667 | 76631467 | ID=MS.gene044195.t1.exon3;Parent=MS.gene044195.t1 |
| chr3.4 | CDS | 76631467 | 76631667 | 76631467 | ID=cds.MS.gene044195.t1;Parent=MS.gene044195.t1 |
| chr3.4 | exon | 76630541 | 76630795 | 76630541 | ID=MS.gene044195.t1.exon4;Parent=MS.gene044195.t1 |
| chr3.4 | CDS | 76630541 | 76630795 | 76630541 | ID=cds.MS.gene044195.t1;Parent=MS.gene044195.t1 |
| chr3.4 | exon | 76628540 | 76629205 | 76628540 | ID=MS.gene044195.t1.exon5;Parent=MS.gene044195.t1 |
| chr3.4 | CDS | 76628540 | 76629205 | 76628540 | ID=cds.MS.gene044195.t1;Parent=MS.gene044195.t1 |
| Gene Sequence |
| Protein sequence |
