Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016750.t1 | XP_003616918.1 | 97.5 | 517 | 13 | 0 | 1 | 517 | 1 | 517 | 1.5e-309 | 1071.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016750.t1 | O48766 | 73.7 | 520 | 127 | 3 | 4 | 517 | 9 | 524 | 2.0e-238 | 826.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016750.t1 | G7K7J2 | 97.5 | 517 | 13 | 0 | 1 | 517 | 1 | 517 | 1.1e-309 | 1071.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016750.t1 | MTR_5g085730 | 97.485 | 517 | 13 | 0 | 1 | 517 | 1 | 517 | 0.0 | 1066 |
MS.gene016750.t1 | MTR_3g080190 | 82.772 | 505 | 87 | 0 | 12 | 516 | 21 | 525 | 0.0 | 883 |
MS.gene016750.t1 | MTR_5g093590 | 71.888 | 498 | 139 | 1 | 4 | 500 | 7 | 504 | 0.0 | 749 |
MS.gene016750.t1 | MTR_8g099410 | 60.300 | 466 | 183 | 1 | 31 | 496 | 28 | 491 | 0.0 | 616 |
MS.gene016750.t1 | MTR_8g099410 | 60.300 | 466 | 183 | 1 | 31 | 496 | 28 | 491 | 0.0 | 614 |
MS.gene016750.t1 | MTR_4g074960 | 59.488 | 469 | 187 | 3 | 29 | 496 | 26 | 492 | 0.0 | 584 |
MS.gene016750.t1 | MTR_1g037340 | 50.725 | 483 | 224 | 6 | 17 | 494 | 6 | 479 | 6.83e-166 | 478 |
MS.gene016750.t1 | MTR_5g010000 | 49.375 | 480 | 223 | 7 | 22 | 497 | 30 | 493 | 1.08e-153 | 448 |
MS.gene016750.t1 | MTR_5g009970 | 47.983 | 471 | 226 | 6 | 30 | 497 | 40 | 494 | 6.36e-153 | 446 |
MS.gene016750.t1 | MTR_3g105230 | 45.661 | 484 | 246 | 6 | 1 | 484 | 1 | 467 | 5.55e-147 | 430 |
MS.gene016750.t1 | MTR_8g104820 | 47.234 | 470 | 235 | 8 | 31 | 496 | 30 | 490 | 1.40e-144 | 425 |
MS.gene016750.t1 | MTR_3g023740 | 45.491 | 499 | 255 | 6 | 1 | 499 | 1 | 482 | 1.40e-143 | 422 |
MS.gene016750.t1 | MTR_3g080810 | 46.908 | 469 | 236 | 8 | 31 | 496 | 35 | 493 | 1.26e-142 | 420 |
MS.gene016750.t1 | MTR_3g117500 | 44.211 | 475 | 254 | 6 | 26 | 497 | 19 | 485 | 1.38e-141 | 417 |
MS.gene016750.t1 | MTR_4g035955 | 45.203 | 469 | 242 | 6 | 29 | 496 | 12 | 466 | 5.81e-141 | 414 |
MS.gene016750.t1 | MTR_4g035930 | 42.531 | 482 | 260 | 7 | 17 | 496 | 1 | 467 | 1.12e-136 | 404 |
MS.gene016750.t1 | MTR_3g010330 | 45.223 | 471 | 238 | 8 | 31 | 496 | 25 | 480 | 5.30e-133 | 395 |
MS.gene016750.t1 | MTR_5g009970 | 46.963 | 428 | 208 | 6 | 73 | 497 | 9 | 420 | 1.22e-132 | 392 |
MS.gene016750.t1 | MTR_1g088190 | 45.648 | 471 | 224 | 9 | 31 | 498 | 39 | 480 | 1.23e-132 | 394 |
MS.gene016750.t1 | MTR_4g035975 | 44.792 | 480 | 234 | 10 | 31 | 496 | 27 | 489 | 3.79e-132 | 393 |
MS.gene016750.t1 | MTR_3g113720 | 44.798 | 471 | 246 | 9 | 32 | 497 | 58 | 519 | 6.80e-131 | 391 |
MS.gene016750.t1 | MTR_8g075990 | 45.435 | 471 | 243 | 10 | 32 | 497 | 64 | 525 | 3.98e-126 | 379 |
MS.gene016750.t1 | MTR_5g009970 | 45.232 | 409 | 205 | 6 | 92 | 497 | 1 | 393 | 2.11e-120 | 359 |
MS.gene016750.t1 | MTR_2g028480 | 39.046 | 566 | 276 | 18 | 2 | 514 | 56 | 605 | 1.70e-101 | 318 |
MS.gene016750.t1 | MTR_5g009970 | 44.575 | 341 | 170 | 6 | 160 | 497 | 1 | 325 | 9.41e-89 | 276 |
MS.gene016750.t1 | MTR_3g082440 | 39.104 | 491 | 257 | 17 | 27 | 491 | 112 | 586 | 1.05e-88 | 285 |
MS.gene016750.t1 | MTR_3g090540 | 36.078 | 510 | 282 | 19 | 29 | 511 | 105 | 597 | 7.17e-85 | 274 |
MS.gene016750.t1 | MTR_1g088190 | 44.695 | 311 | 141 | 8 | 31 | 338 | 39 | 321 | 4.22e-71 | 230 |
MS.gene016750.t1 | MTR_1g037320 | 54.658 | 161 | 72 | 1 | 92 | 252 | 1 | 160 | 3.81e-46 | 163 |
MS.gene016750.t1 | MTR_1g037320 | 49.180 | 122 | 61 | 1 | 373 | 494 | 169 | 289 | 4.63e-34 | 130 |
MS.gene016750.t1 | MTR_7g108925 | 44.654 | 159 | 87 | 1 | 340 | 498 | 43 | 200 | 3.37e-44 | 155 |
MS.gene016750.t1 | MTR_0393s0050 | 43.571 | 140 | 79 | 0 | 340 | 479 | 20 | 159 | 9.44e-37 | 134 |
MS.gene016750.t1 | MTR_4g128810 | 41.781 | 146 | 80 | 3 | 347 | 491 | 187 | 328 | 3.86e-26 | 110 |
MS.gene016750.t1 | MTR_4g047570 | 33.333 | 114 | 55 | 3 | 280 | 393 | 2 | 94 | 1.19e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016750.t1 | AT2G32990 | 75.502 | 498 | 113 | 2 | 4 | 495 | 9 | 503 | 0.0 | 800 |
MS.gene016750.t1 | AT1G64390 | 60.944 | 466 | 180 | 1 | 31 | 496 | 25 | 488 | 0.0 | 615 |
MS.gene016750.t1 | AT4G11050 | 60.297 | 471 | 185 | 1 | 27 | 497 | 22 | 490 | 0.0 | 611 |
MS.gene016750.t1 | AT4G11050 | 60.297 | 471 | 185 | 1 | 27 | 497 | 22 | 490 | 0.0 | 611 |
MS.gene016750.t1 | AT4G11050 | 60.297 | 471 | 185 | 1 | 27 | 497 | 22 | 490 | 0.0 | 608 |
MS.gene016750.t1 | AT1G48930 | 57.725 | 466 | 195 | 2 | 30 | 495 | 29 | 492 | 0.0 | 543 |
MS.gene016750.t1 | AT2G44550 | 48.971 | 486 | 238 | 5 | 9 | 494 | 12 | 487 | 8.32e-161 | 466 |
MS.gene016750.t1 | AT2G44560 | 48.971 | 486 | 239 | 5 | 9 | 494 | 12 | 488 | 1.66e-158 | 460 |
MS.gene016750.t1 | AT2G44540 | 48.560 | 486 | 241 | 5 | 9 | 494 | 12 | 488 | 2.16e-158 | 460 |
MS.gene016750.t1 | AT2G44570 | 47.737 | 486 | 245 | 6 | 10 | 494 | 12 | 489 | 8.28e-156 | 453 |
MS.gene016750.t1 | AT1G70710 | 45.875 | 497 | 256 | 7 | 1 | 496 | 1 | 485 | 4.21e-148 | 434 |
MS.gene016750.t1 | AT4G02290 | 47.974 | 469 | 234 | 6 | 31 | 498 | 52 | 511 | 2.37e-146 | 430 |
MS.gene016750.t1 | AT1G23210 | 45.603 | 489 | 256 | 6 | 9 | 496 | 6 | 485 | 4.90e-146 | 428 |
MS.gene016750.t1 | AT1G02800 | 48.498 | 466 | 226 | 7 | 31 | 494 | 43 | 496 | 1.47e-144 | 425 |
MS.gene016750.t1 | AT4G23560 | 48.739 | 476 | 222 | 8 | 26 | 497 | 18 | 475 | 3.88e-144 | 423 |
MS.gene016750.t1 | AT3G43860 | 44.378 | 498 | 254 | 8 | 3 | 496 | 5 | 483 | 3.88e-142 | 418 |
MS.gene016750.t1 | AT3G43860 | 44.378 | 498 | 254 | 8 | 3 | 496 | 5 | 483 | 3.88e-142 | 418 |
MS.gene016750.t1 | AT4G09740 | 47.899 | 476 | 226 | 8 | 26 | 497 | 18 | 475 | 5.53e-141 | 415 |
MS.gene016750.t1 | AT4G39010 | 44.894 | 470 | 247 | 7 | 31 | 496 | 29 | 490 | 1.24e-139 | 412 |
MS.gene016750.t1 | AT1G19940 | 47.186 | 462 | 234 | 7 | 31 | 491 | 48 | 500 | 4.05e-136 | 404 |
MS.gene016750.t1 | AT1G19940 | 47.186 | 462 | 234 | 7 | 31 | 491 | 48 | 500 | 4.05e-136 | 404 |
MS.gene016750.t1 | AT1G75680 | 47.265 | 457 | 231 | 7 | 32 | 487 | 58 | 505 | 5.87e-136 | 404 |
MS.gene016750.t1 | AT4G39000 | 45.532 | 470 | 244 | 7 | 31 | 496 | 25 | 486 | 9.35e-134 | 397 |
MS.gene016750.t1 | AT1G22880 | 43.121 | 487 | 258 | 10 | 16 | 496 | 5 | 478 | 3.18e-132 | 393 |
MS.gene016750.t1 | AT1G71380 | 43.443 | 488 | 257 | 11 | 15 | 496 | 4 | 478 | 4.37e-131 | 390 |
MS.gene016750.t1 | AT4G38990 | 43.232 | 495 | 260 | 10 | 13 | 496 | 5 | 489 | 1.46e-124 | 374 |
MS.gene016750.t1 | AT4G02290 | 45.343 | 408 | 213 | 6 | 92 | 498 | 1 | 399 | 1.83e-114 | 344 |
MS.gene016750.t1 | AT2G44570 | 44.750 | 400 | 212 | 6 | 10 | 408 | 12 | 403 | 1.64e-111 | 337 |
MS.gene016750.t1 | AT1G22880 | 41.523 | 407 | 223 | 9 | 92 | 496 | 1 | 394 | 1.81e-104 | 318 |
MS.gene016750.t1 | AT4G39010 | 43.443 | 366 | 196 | 6 | 31 | 392 | 29 | 387 | 1.07e-102 | 314 |
MS.gene016750.t1 | AT1G19940 | 45.330 | 364 | 194 | 5 | 31 | 393 | 48 | 407 | 4.00e-98 | 303 |
MS.gene016750.t1 | AT5G49720 | 40.936 | 513 | 258 | 17 | 31 | 514 | 108 | 604 | 2.32e-94 | 300 |
MS.gene016750.t1 | AT1G65610 | 37.320 | 485 | 265 | 17 | 31 | 491 | 116 | 585 | 7.29e-85 | 275 |
MS.gene016750.t1 | AT4G24260 | 41.104 | 489 | 245 | 17 | 31 | 491 | 108 | 581 | 2.44e-84 | 273 |
MS.gene016750.t1 | AT4G38990 | 40.997 | 361 | 183 | 6 | 13 | 372 | 5 | 336 | 1.03e-79 | 253 |
MS.gene016750.t1 | AT1G22880 | 46.032 | 315 | 153 | 8 | 16 | 324 | 5 | 308 | 1.67e-78 | 249 |
MS.gene016750.t1 | AT4G24260 | 38.718 | 390 | 203 | 14 | 31 | 393 | 108 | 488 | 1.38e-52 | 186 |
MS.gene016750.t1 | AT4G24260 | 39.773 | 352 | 184 | 11 | 31 | 358 | 108 | 455 | 2.07e-52 | 184 |
Find 98 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCACAAGTTGATTACATTT+TGG | 0.114624 | 5.2:+72947751 | MS.gene016750:CDS |
ACACAATGGAAGCAATTAAA+TGG | 0.182204 | 5.2:+72945233 | MS.gene016750:CDS |
CTATATATTTATTTATTTAA+AGG | 0.200188 | 5.2:-72948125 | None:intergenic |
AAGGAGAATAAAGGGTTTAT+TGG | 0.201878 | 5.2:+72947866 | MS.gene016750:CDS |
ATGGGCCTAGTTACCCTAAA+AGG | 0.228031 | 5.2:+72947810 | MS.gene016750:CDS |
GCAGGTGATCATGTAAAATT+TGG | 0.275934 | 5.2:+72945124 | MS.gene016750:CDS |
TCAAAATTGTCTTGCCAATC+AGG | 0.280992 | 5.2:-72947968 | None:intergenic |
TTTGTGTAGTTGTTTGAGTT+TGG | 0.313132 | 5.2:+72945968 | MS.gene016750:intron |
AGATCCTAACCCTAATGTTT+TGG | 0.327088 | 5.2:+72947925 | MS.gene016750:CDS |
GCATATTGAAGACAATAAAA+TGG | 0.327204 | 5.2:+72948072 | MS.gene016750:CDS |
AACAATGTTGCATGAGAAAA+TGG | 0.330935 | 5.2:-72944806 | None:intergenic |
ATGTCATATAAGGAGAATAA+AGG | 0.332352 | 5.2:+72947857 | MS.gene016750:CDS |
GTACTCAAGGGTATGATAAT+TGG | 0.334494 | 5.2:+72947891 | MS.gene016750:CDS |
ACTAAGTAGCTCATGTTCAT+AGG | 0.336832 | 5.2:-72947782 | None:intergenic |
CAAAACTTAGAATTTCTTCA+TGG | 0.342767 | 5.2:-72947724 | None:intergenic |
GATCATTCTGCCCTCATTGA+TGG | 0.345421 | 5.2:+72944969 | MS.gene016750:CDS |
AAAGCTCCAACCAAAACATT+AGG | 0.350493 | 5.2:-72947935 | None:intergenic |
ACATGATTGTAATTCACTTT+TGG | 0.357266 | 5.2:+72948096 | MS.gene016750:CDS |
CTTTGGTTGGTGGTCCTGAT+TGG | 0.363936 | 5.2:+72947954 | MS.gene016750:CDS |
ACCTCTGCCCACAAAACATT+TGG | 0.367502 | 5.2:-72945289 | None:intergenic |
AGCATCAATTATGTCATATA+AGG | 0.370317 | 5.2:+72947847 | MS.gene016750:CDS |
TTACTGTGACAATGCTTTCA+TGG | 0.375820 | 5.2:+72945161 | MS.gene016750:CDS |
AACGCTGTGCTTCAAAATAA+AGG | 0.388474 | 5.2:-72944908 | None:intergenic |
TGTCATATAAGGAGAATAAA+GGG | 0.398718 | 5.2:+72947858 | MS.gene016750:CDS |
CACAATGGAAGCAATTAAAT+GGG | 0.416525 | 5.2:+72945234 | MS.gene016750:CDS |
CTTGATGTTGTCATGTCCTC+TGG | 0.421252 | 5.2:-72945448 | None:intergenic |
ATTAACAATGCTAATAACTT+TGG | 0.421348 | 5.2:+72946136 | MS.gene016750:CDS |
ATCCCAGCTGAACTCTGTTA+TGG | 0.429035 | 5.2:-72946173 | None:intergenic |
TCTCCAACTCATTGCTTCTC+AGG | 0.431384 | 5.2:+72946210 | MS.gene016750:CDS |
GATACATGGATGAGTTGTTA+TGG | 0.433641 | 5.2:+72946059 | MS.gene016750:CDS |
GCTAATAACTTTGGTGGCAT+TGG | 0.440288 | 5.2:+72946145 | MS.gene016750:CDS |
CAAGCGACGCGTTGATTGTA+AGG | 0.449742 | 5.2:-72944942 | None:intergenic |
AATCCTGGTTCAGATCTTGC+TGG | 0.454479 | 5.2:+72945496 | MS.gene016750:CDS |
TGTAGGTGGATTTGGTAGGA+GGG | 0.457992 | 5.2:+72945092 | MS.gene016750:intron |
TAAGAATGGTGAAGATGAAA+AGG | 0.458583 | 5.2:-72944836 | None:intergenic |
GTGATATACTCGACCAATAT+AGG | 0.459519 | 5.2:+72947498 | MS.gene016750:CDS |
ATGAGCTACTTAGTGGGCTA+TGG | 0.459703 | 5.2:+72947791 | MS.gene016750:CDS |
ATCTAAATACTCTTCTTTGT+CGG | 0.460194 | 5.2:-72946107 | None:intergenic |
GAGTTTGGAGACAAGTATAG+AGG | 0.461932 | 5.2:+72945983 | MS.gene016750:CDS |
GTGTAGGTGGATTTGGTAGG+AGG | 0.462897 | 5.2:+72945091 | MS.gene016750:intron |
GGTCCATAACAGAGTTCAGC+TGG | 0.465205 | 5.2:+72946170 | MS.gene016750:CDS |
CTCATTGATGGTCTTGAACA+AGG | 0.471313 | 5.2:+72944981 | MS.gene016750:CDS |
GGAAAATATGATGCAAGTGT+TGG | 0.472006 | 5.2:+72946004 | MS.gene016750:CDS |
GGGTTTATTGGTTGTACTCA+AGG | 0.473441 | 5.2:+72947878 | MS.gene016750:CDS |
AAGCTCCAACCAAAACATTA+GGG | 0.475626 | 5.2:-72947934 | None:intergenic |
GTAGGAGGGTATTATGATGC+AGG | 0.476688 | 5.2:+72945106 | MS.gene016750:CDS |
AACAATGCTAATAACTTTGG+TGG | 0.477129 | 5.2:+72946139 | MS.gene016750:CDS |
TGGAGAGACAGCAGCAGCTA+TGG | 0.477469 | 5.2:+72945516 | MS.gene016750:CDS |
CCAACCAAAACATTAGGGTT+AGG | 0.487034 | 5.2:-72947929 | None:intergenic |
CTAAGTAGCTCATGTTCATA+GGG | 0.491701 | 5.2:-72947781 | None:intergenic |
TTGGTTGGAGCTTTGGTTGG+TGG | 0.496064 | 5.2:+72947944 | MS.gene016750:CDS |
TGTAAAATTTGGTTTACCAA+TGG | 0.496239 | 5.2:+72945135 | MS.gene016750:CDS |
ATACATGGATGAGTTGTTAT+GGG | 0.499908 | 5.2:+72946060 | MS.gene016750:CDS |
TACTGTGACAATGCTTTCAT+GGG | 0.500919 | 5.2:+72945162 | MS.gene016750:CDS |
AGCTGGGATGTCAAATATGC+AGG | 0.502495 | 5.2:+72946187 | MS.gene016750:CDS |
TATGAACATGAGCTACTTAG+TGG | 0.502664 | 5.2:+72947784 | MS.gene016750:CDS |
ATAACTTTGGTGGCATTGGT+TGG | 0.503155 | 5.2:+72946149 | MS.gene016750:CDS |
TAATTGATGCTCCTCTATGA+TGG | 0.503574 | 5.2:-72947835 | None:intergenic |
AGCTGGAGTTCTTTCCACAT+TGG | 0.508311 | 5.2:-72947573 | None:intergenic |
CTTACAATCAACGCGTCGCT+TGG | 0.511017 | 5.2:+72944943 | MS.gene016750:CDS |
AAGATAGATGAAAACAATCC+TGG | 0.513053 | 5.2:+72945481 | MS.gene016750:CDS |
GTGACACTGATCATTATTGT+TGG | 0.516338 | 5.2:+72945419 | MS.gene016750:CDS |
ATAGAAGAAATTGAAGGTGC+TGG | 0.518789 | 5.2:+72945199 | MS.gene016750:CDS |
TTGAATGTTAGTCGTAAGAA+TGG | 0.521671 | 5.2:-72944850 | None:intergenic |
TCATTGATGGTCTTGAACAA+GGG | 0.524596 | 5.2:+72944982 | MS.gene016750:CDS |
TGGGCCTAGTTACCCTAAAA+GGG | 0.526238 | 5.2:+72947811 | MS.gene016750:CDS |
AGTTACTATGCGTCGGTGAG+TGG | 0.530726 | 5.2:+72946037 | MS.gene016750:CDS |
GAATATATAGAAGAAATTGA+AGG | 0.537965 | 5.2:+72945193 | MS.gene016750:CDS |
GTATGATAATTGGTACAGTA+AGG | 0.548590 | 5.2:+72947901 | MS.gene016750:CDS |
GGTTTATTGGTTGTACTCAA+GGG | 0.549775 | 5.2:+72947879 | MS.gene016750:CDS |
TAAATACTCTTCTTTGTCGG+TGG | 0.550160 | 5.2:-72946104 | None:intergenic |
CTGACATATAGTAATCCAGC+TGG | 0.552001 | 5.2:-72947590 | None:intergenic |
TTTGTGTAGGTGGATTTGGT+AGG | 0.556338 | 5.2:+72945088 | MS.gene016750:intron |
TTACCTGAGAAGCAATGAGT+TGG | 0.557016 | 5.2:-72946213 | None:intergenic |
TGAGCTACTTAGTGGGCTAT+GGG | 0.561139 | 5.2:+72947792 | MS.gene016750:CDS |
AATGTGGAAAGAACTCCAGC+TGG | 0.567462 | 5.2:+72947575 | MS.gene016750:CDS |
CCTAAAAGGGTCCATCATAG+AGG | 0.567742 | 5.2:+72947824 | MS.gene016750:CDS |
TGCGTCGGTGAGTGGATACA+TGG | 0.568122 | 5.2:+72946045 | MS.gene016750:CDS |
CATTGATGGTCTTGAACAAG+GGG | 0.580301 | 5.2:+72944983 | MS.gene016750:CDS |
ATTGTCACAGTAAATGCCAT+TGG | 0.581317 | 5.2:-72945151 | None:intergenic |
AAAAGTAAATGAGAGTAATG+TGG | 0.585609 | 5.2:-72945571 | None:intergenic |
GAATTGTCTTAGGTTGGTGA+TGG | 0.590307 | 5.2:+72945397 | MS.gene016750:intron |
GATTTAGTACCTGTTGAGCA+TGG | 0.594061 | 5.2:-72945597 | None:intergenic |
GATTACTATATGTCAGACAA+TGG | 0.612919 | 5.2:+72947597 | MS.gene016750:CDS |
TTGTTCAAGACCATCAATGA+GGG | 0.619710 | 5.2:-72944979 | None:intergenic |
AGTGAAAAGTTACTATGCGT+CGG | 0.625933 | 5.2:+72946030 | MS.gene016750:CDS |
TCTCCAGCAAGATCTGAACC+AGG | 0.626113 | 5.2:-72945499 | None:intergenic |
ATGAACATGAGCTACTTAGT+GGG | 0.635629 | 5.2:+72947785 | MS.gene016750:CDS |
GTCCATAACAGAGTTCAGCT+GGG | 0.646191 | 5.2:+72946171 | MS.gene016750:CDS |
TTATTGTTGGCAAAGACCAG+AGG | 0.655563 | 5.2:+72945432 | MS.gene016750:CDS |
CTTGTTCAAGACCATCAATG+AGG | 0.657147 | 5.2:-72944980 | None:intergenic |
AAACATCAATGGAACCAATG+TGG | 0.661851 | 5.2:+72947559 | MS.gene016750:CDS |
GCTGTGCTTCAAAATAAAGG+AGG | 0.685635 | 5.2:-72944905 | None:intergenic |
AGTTGTTATGGGCTGCCACG+TGG | 0.694285 | 5.2:+72946071 | MS.gene016750:CDS |
ACTGTGACAATGCTTTCATG+GGG | 0.697045 | 5.2:+72945163 | MS.gene016750:CDS |
ACAATGGAAGCAATTAAATG+GGG | 0.705575 | 5.2:+72945235 | MS.gene016750:CDS |
TGGTGAATTACAACACACAA+TGG | 0.711977 | 5.2:+72945219 | MS.gene016750:CDS |
GGTGGCTTTATAAAGCCACG+TGG | 0.802325 | 5.2:-72946086 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAATATTATATTAAAA+AGG | + | chr5.2:72946485-72946504 | MS.gene016750:intron | 0.0% |
!! | AAAACAAAACATATATTAAT+TGG | - | chr5.2:72945944-72945963 | None:intergenic | 10.0% |
!! | TTCTTTGATTATCTTATTAT+TGG | - | chr5.2:72947308-72947327 | None:intergenic | 15.0% |
!!! | AAACCATTTTTTAAAAACTT+CGG | - | chr5.2:72946266-72946285 | None:intergenic | 15.0% |
!!! | GAATGACATTTTAAAAATAA+TGG | - | chr5.2:72946748-72946767 | None:intergenic | 15.0% |
!!! | TATTTTTAAAATGTCATTCA+TGG | + | chr5.2:72946749-72946768 | MS.gene016750:intron | 15.0% |
!!! | TCTATTTTCTTAAATTACTA+CGG | - | chr5.2:72945654-72945673 | None:intergenic | 15.0% |
!! | ATGCATGAATTAAAGTATAT+AGG | + | chr5.2:72946775-72946794 | MS.gene016750:intron | 20.0% |
!! | ATGTAACAAAATTAAAGAAG+TGG | - | chr5.2:72945344-72945363 | None:intergenic | 20.0% |
!! | ATTAACAATGCTAATAACTT+TGG | + | chr5.2:72946136-72946155 | MS.gene016750:CDS | 20.0% |
!! | GAATATATAGAAGAAATTGA+AGG | + | chr5.2:72945193-72945212 | MS.gene016750:CDS | 20.0% |
!! | GCTCAAATAAATATATCTAA+TGG | + | chr5.2:72945009-72945028 | MS.gene016750:intron | 20.0% |
!! | TATATAGGTGTATTATCTTT+AGG | + | chr5.2:72946790-72946809 | MS.gene016750:intron | 20.0% |
!! | TATTCAACTTTATCTAGATT+TGG | + | chr5.2:72946686-72946705 | MS.gene016750:intron | 20.0% |
!! | TTTAAAAACTTCGGATAAAA+TGG | - | chr5.2:72946257-72946276 | None:intergenic | 20.0% |
!! | TTTACTAATTTGAAAACGAT+AGG | + | chr5.2:72946710-72946729 | MS.gene016750:intron | 20.0% |
!!! | AAGACAATTTTGAAGATAAA+AGG | + | chr5.2:72947978-72947997 | MS.gene016750:CDS | 20.0% |
!!! | ATGCAACTATAATATTGATT+TGG | + | chr5.2:72946316-72946335 | MS.gene016750:intron | 20.0% |
!!! | ATTTGTTTTCTTAAACACAA+TGG | - | chr5.2:72945551-72945570 | None:intergenic | 20.0% |
!!! | GAATTTAATTTGATTTGACT+AGG | + | chr5.2:72945815-72945834 | MS.gene016750:intron | 20.0% |
!!! | GATTTTAATTGAATTGTCTT+AGG | + | chr5.2:72945387-72945406 | MS.gene016750:intron | 20.0% |
!!! | GCTTAATATTTTCAAACAAA+AGG | - | chr5.2:72945867-72945886 | None:intergenic | 20.0% |
!!! | TATCCGAAGTTTTTAAAAAA+TGG | + | chr5.2:72946260-72946279 | MS.gene016750:intron | 20.0% |
!!! | TGACATCAAAGATTTTAATA+TGG | - | chr5.2:72946293-72946312 | None:intergenic | 20.0% |
!!! | TTTTTCCTCAAAATTTTCTT+TGG | + | chr5.2:72946641-72946660 | MS.gene016750:intron | 20.0% |
! | AAAAGTAAATGAGAGTAATG+TGG | - | chr5.2:72945574-72945593 | None:intergenic | 25.0% |
! | AAGAAGTGGAATTGTTTAAT+TGG | - | chr5.2:72945330-72945349 | None:intergenic | 25.0% |
! | AATATTCTTTAGATCTGTGA+AGG | + | chr5.2:72946562-72946581 | MS.gene016750:intron | 25.0% |
! | AGCATCAATTATGTCATATA+AGG | + | chr5.2:72947847-72947866 | MS.gene016750:CDS | 25.0% |
! | ATCTAAATACTCTTCTTTGT+CGG | - | chr5.2:72946110-72946129 | None:intergenic | 25.0% |
! | ATGTCATATAAGGAGAATAA+AGG | + | chr5.2:72947857-72947876 | MS.gene016750:CDS | 25.0% |
! | CAAAACTTAGAATTTCTTCA+TGG | - | chr5.2:72947727-72947746 | None:intergenic | 25.0% |
! | GCATATTGAAGACAATAAAA+TGG | + | chr5.2:72948072-72948091 | MS.gene016750:CDS | 25.0% |
! | GGTTTAAAAACTGCAAAAAA+TGG | - | chr5.2:72947457-72947476 | None:intergenic | 25.0% |
! | TGTCATATAAGGAGAATAAA+GGG | + | chr5.2:72947858-72947877 | MS.gene016750:CDS | 25.0% |
! | TTAATTGAATTGTCTTAGGT+TGG | + | chr5.2:72945391-72945410 | MS.gene016750:intron | 25.0% |
!! | AATTAAAGTGATGTTGCTTA+TGG | + | chr5.2:72946901-72946920 | MS.gene016750:intron | 25.0% |
!! | ACATGATTGTAATTCACTTT+TGG | + | chr5.2:72948096-72948115 | MS.gene016750:CDS | 25.0% |
!! | TGTAAAATTTGGTTTACCAA+TGG | + | chr5.2:72945135-72945154 | MS.gene016750:CDS | 25.0% |
!!! | AACATTCAAGCTTTTGATTA+TGG | + | chr5.2:72944864-72944883 | MS.gene016750:CDS | 25.0% |
!!! | ATACTGTCATTTCAATTTTG+AGG | - | chr5.2:72945766-72945785 | None:intergenic | 25.0% |
!!! | ATATGTACATGTTTTTGTGT+AGG | + | chr5.2:72945075-72945094 | MS.gene016750:intron | 25.0% |
!!! | ATCACAAGTTGATTACATTT+TGG | + | chr5.2:72947751-72947770 | MS.gene016750:CDS | 25.0% |
!!! | TCACAAGTTGATTACATTTT+GGG | + | chr5.2:72947752-72947771 | MS.gene016750:CDS | 25.0% |
AACAATGCTAATAACTTTGG+TGG | + | chr5.2:72946139-72946158 | MS.gene016750:CDS | 30.0% | |
AACAATGTTGCATGAGAAAA+TGG | - | chr5.2:72944809-72944828 | None:intergenic | 30.0% | |
AAGATAGATGAAAACAATCC+TGG | + | chr5.2:72945481-72945500 | MS.gene016750:CDS | 30.0% | |
AAGGAGAATAAAGGGTTTAT+TGG | + | chr5.2:72947866-72947885 | MS.gene016750:CDS | 30.0% | |
AATCAAAAACTCACATGTCA+TGG | + | chr5.2:72947689-72947708 | MS.gene016750:CDS | 30.0% | |
ACAATGGAAGCAATTAAATG+GGG | + | chr5.2:72945235-72945254 | MS.gene016750:CDS | 30.0% | |
ACACAATGGAAGCAATTAAA+TGG | + | chr5.2:72945233-72945252 | MS.gene016750:CDS | 30.0% | |
ACTCTTATCTGTTAAGTTCT+TGG | + | chr5.2:72946599-72946618 | MS.gene016750:intron | 30.0% | |
ATACATGGATGAGTTGTTAT+GGG | + | chr5.2:72946060-72946079 | MS.gene016750:CDS | 30.0% | |
CACAATGGAAGCAATTAAAT+GGG | + | chr5.2:72945234-72945253 | MS.gene016750:CDS | 30.0% | |
GAACTTAACAGATAAGAGTA+TGG | - | chr5.2:72946598-72946617 | None:intergenic | 30.0% | |
GAGACATCATTAAAAGTGAT+CGG | + | chr5.2:72947230-72947249 | MS.gene016750:intron | 30.0% | |
GATTACTATATGTCAGACAA+TGG | + | chr5.2:72947597-72947616 | MS.gene016750:CDS | 30.0% | |
GTATGATAATTGGTACAGTA+AGG | + | chr5.2:72947901-72947920 | MS.gene016750:CDS | 30.0% | |
TAAGAATGGTGAAGATGAAA+AGG | - | chr5.2:72944839-72944858 | None:intergenic | 30.0% | |
TATATCATTCCATATCCTCT+TGG | - | chr5.2:72946947-72946966 | None:intergenic | 30.0% | |
TGTCAAACACAAAAACATGT+TGG | + | chr5.2:72945711-72945730 | MS.gene016750:intron | 30.0% | |
TGTCTCAACAAAAACATCAA+TGG | + | chr5.2:72947548-72947567 | MS.gene016750:CDS | 30.0% | |
TTGAATGTTAGTCGTAAGAA+TGG | - | chr5.2:72944853-72944872 | None:intergenic | 30.0% | |
TTGCAAAAAGAGCTACTAAA+GGG | - | chr5.2:72948045-72948064 | None:intergenic | 30.0% | |
TTTGCAAAAAGAGCTACTAA+AGG | - | chr5.2:72948046-72948065 | None:intergenic | 30.0% | |
! | AAAATTTTCTTTGGTCCATG+TGG | + | chr5.2:72946650-72946669 | MS.gene016750:intron | 30.0% |
! | ATACTAGTCCAAATGTTTTG+TGG | + | chr5.2:72945281-72945300 | MS.gene016750:CDS | 30.0% |
! | ATGACATGTGAGTTTTTGAT+TGG | - | chr5.2:72947690-72947709 | None:intergenic | 30.0% |
! | ATGGACCAAAGAAAATTTTG+AGG | - | chr5.2:72946649-72946668 | None:intergenic | 30.0% |
! | GAACAATTTTATGCAAACTG+AGG | + | chr5.2:72948000-72948019 | MS.gene016750:CDS | 30.0% |
! | TACTAGTCCAAATGTTTTGT+GGG | + | chr5.2:72945282-72945301 | MS.gene016750:CDS | 30.0% |
! | TATGTTTCTTGTGTTTTGCT+TGG | - | chr5.2:72947478-72947497 | None:intergenic | 30.0% |
! | TTTGTGTAGTTGTTTGAGTT+TGG | + | chr5.2:72945968-72945987 | MS.gene016750:intron | 30.0% |
!! | ACTGCTCTTTTAAAAATGGT+TGG | + | chr5.2:72947202-72947221 | MS.gene016750:intron | 30.0% |
!! | CTCTTTTAAAAATGGTTGGA+AGG | + | chr5.2:72947206-72947225 | MS.gene016750:intron | 30.0% |
!! | TAGCACTGCTCTTTTAAAAA+TGG | + | chr5.2:72947198-72947217 | MS.gene016750:intron | 30.0% |
AAACATCAATGGAACCAATG+TGG | + | chr5.2:72947559-72947578 | MS.gene016750:CDS | 35.0% | |
AAAGCTCCAACCAAAACATT+AGG | - | chr5.2:72947938-72947957 | None:intergenic | 35.0% | |
AACGCTGTGCTTCAAAATAA+AGG | - | chr5.2:72944911-72944930 | None:intergenic | 35.0% | |
AAGCTCCAACCAAAACATTA+GGG | - | chr5.2:72947937-72947956 | None:intergenic | 35.0% | |
ACTAAGTAGCTCATGTTCAT+AGG | - | chr5.2:72947785-72947804 | None:intergenic | 35.0% | |
AGTGAAAAGTTACTATGCGT+CGG | + | chr5.2:72946030-72946049 | MS.gene016750:CDS | 35.0% | |
ATGAACATGAGCTACTTAGT+GGG | + | chr5.2:72947785-72947804 | MS.gene016750:CDS | 35.0% | |
ATTGTCACAGTAAATGCCAT+TGG | - | chr5.2:72945154-72945173 | None:intergenic | 35.0% | |
CTAAGTAGCTCATGTTCATA+GGG | - | chr5.2:72947784-72947803 | None:intergenic | 35.0% | |
GATACATGGATGAGTTGTTA+TGG | + | chr5.2:72946059-72946078 | MS.gene016750:CDS | 35.0% | |
GCAGGTGATCATGTAAAATT+TGG | + | chr5.2:72945124-72945143 | MS.gene016750:CDS | 35.0% | |
GGAAAATATGATGCAAGTGT+TGG | + | chr5.2:72946004-72946023 | MS.gene016750:CDS | 35.0% | |
GTGACACTGATCATTATTGT+TGG | + | chr5.2:72945419-72945438 | MS.gene016750:CDS | 35.0% | |
GTGATATACTCGACCAATAT+AGG | + | chr5.2:72947498-72947517 | MS.gene016750:CDS | 35.0% | |
TAAATACTCTTCTTTGTCGG+TGG | - | chr5.2:72946107-72946126 | None:intergenic | 35.0% | |
TAATTGATGCTCCTCTATGA+TGG | - | chr5.2:72947838-72947857 | None:intergenic | 35.0% | |
TACTGTGACAATGCTTTCAT+GGG | + | chr5.2:72945162-72945181 | MS.gene016750:CDS | 35.0% | |
TATGAACATGAGCTACTTAG+TGG | + | chr5.2:72947784-72947803 | MS.gene016750:CDS | 35.0% | |
TCAAAATTGTCTTGCCAATC+AGG | - | chr5.2:72947971-72947990 | None:intergenic | 35.0% | |
TGCAAAAAGAGCTACTAAAG+GGG | - | chr5.2:72948044-72948063 | None:intergenic | 35.0% | |
TGGTGAATTACAACACACAA+TGG | + | chr5.2:72945219-72945238 | MS.gene016750:CDS | 35.0% | |
TTACTGTGACAATGCTTTCA+TGG | + | chr5.2:72945161-72945180 | MS.gene016750:CDS | 35.0% | |
TTAGTCATTGACAAAGCTAG+TGG | + | chr5.2:72947272-72947291 | MS.gene016750:intron | 35.0% | |
TTGTTCAAGACCATCAATGA+GGG | - | chr5.2:72944982-72945001 | None:intergenic | 35.0% | |
! | AGATCCTAACCCTAATGTTT+TGG | + | chr5.2:72947925-72947944 | MS.gene016750:CDS | 35.0% |
! | ATAGAAGAAATTGAAGGTGC+TGG | + | chr5.2:72945199-72945218 | MS.gene016750:CDS | 35.0% |
! | GCTTGATGTCACTTCAATTA+CGG | - | chr5.2:72946366-72946385 | None:intergenic | 35.0% |
! | GGTTTATTGGTTGTACTCAA+GGG | + | chr5.2:72947879-72947898 | MS.gene016750:CDS | 35.0% |
! | GTACTCAAGGGTATGATAAT+TGG | + | chr5.2:72947891-72947910 | MS.gene016750:CDS | 35.0% |
! | TCATTGATGGTCTTGAACAA+GGG | + | chr5.2:72944982-72945001 | MS.gene016750:CDS | 35.0% |
! | TGTCACTTCAATTACGGTTA+TGG | - | chr5.2:72946360-72946379 | None:intergenic | 35.0% |
!! | AATAAAGGAGGCTTTTTGAG+AGG | - | chr5.2:72944896-72944915 | None:intergenic | 35.0% |
!! | ACTCTGCTTTTGACCTATAT+TGG | - | chr5.2:72947514-72947533 | None:intergenic | 35.0% |
!! | ATAAAGGAGGCTTTTTGAGA+GGG | - | chr5.2:72944895-72944914 | None:intergenic | 35.0% |
!! | TGTACATGTTTTTGTGTAGG+TGG | + | chr5.2:72945078-72945097 | MS.gene016750:intron | 35.0% |
!! | TGTTTTTGTGTAGGTGGATT+TGG | + | chr5.2:72945084-72945103 | MS.gene016750:intron | 35.0% |
!!! | TAATGTTTTGGTTGGAGCTT+TGG | + | chr5.2:72947937-72947956 | MS.gene016750:CDS | 35.0% |
ACTGTGACAATGCTTTCATG+GGG | + | chr5.2:72945163-72945182 | MS.gene016750:CDS | 40.0% | |
CAAAAACTCACATGTCATGG+AGG | + | chr5.2:72947692-72947711 | MS.gene016750:CDS | 40.0% | |
CCAACCAAAACATTAGGGTT+AGG | - | chr5.2:72947932-72947951 | None:intergenic | 40.0% | |
CGGAGATGTGACTGAAAAAT+AGG | - | chr5.2:72947100-72947119 | None:intergenic | 40.0% | |
CTGACATATAGTAATCCAGC+TGG | - | chr5.2:72947593-72947612 | None:intergenic | 40.0% | |
CTTATGGTTGAGCCTAATGT+TGG | + | chr5.2:72946917-72946936 | MS.gene016750:intron | 40.0% | |
CTTGTTCAAGACCATCAATG+AGG | - | chr5.2:72944983-72945002 | None:intergenic | 40.0% | |
GAGTTTGGAGACAAGTATAG+AGG | + | chr5.2:72945983-72946002 | MS.gene016750:CDS | 40.0% | |
GATTTAGTACCTGTTGAGCA+TGG | - | chr5.2:72945600-72945619 | None:intergenic | 40.0% | |
GCACTATTTGCCACAATACA+CGG | - | chr5.2:72947120-72947139 | None:intergenic | 40.0% | |
GCTGTGCTTCAAAATAAAGG+AGG | - | chr5.2:72944908-72944927 | None:intergenic | 40.0% | |
GTTTGACACCAACAAGATGT+TGG | - | chr5.2:72945699-72945718 | None:intergenic | 40.0% | |
TAGAAATATGCCACTCCACA+TGG | - | chr5.2:72946668-72946687 | None:intergenic | 40.0% | |
TATACGTGCCAACATCTTGT+TGG | + | chr5.2:72945688-72945707 | MS.gene016750:intron | 40.0% | |
TCATCACTTAGTGTGTGTGA+TGG | - | chr5.2:72946388-72946407 | None:intergenic | 40.0% | |
TTACCTGAGAAGCAATGAGT+TGG | - | chr5.2:72946216-72946235 | None:intergenic | 40.0% | |
TTATTGTTGGCAAAGACCAG+AGG | + | chr5.2:72945432-72945451 | MS.gene016750:CDS | 40.0% | |
! | ACTTTTACACCATGCTCAAC+AGG | + | chr5.2:72945588-72945607 | MS.gene016750:CDS | 40.0% |
! | CATTGATGGTCTTGAACAAG+GGG | + | chr5.2:72944983-72945002 | MS.gene016750:CDS | 40.0% |
! | CTCATTGATGGTCTTGAACA+AGG | + | chr5.2:72944981-72945000 | MS.gene016750:CDS | 40.0% |
! | GCTAATAACTTTGGTGGCAT+TGG | + | chr5.2:72946145-72946164 | MS.gene016750:CDS | 40.0% |
! | GGGTTTATTGGTTGTACTCA+AGG | + | chr5.2:72947878-72947897 | MS.gene016750:CDS | 40.0% |
! | TTTGTGTAGGTGGATTTGGT+AGG | + | chr5.2:72945088-72945107 | MS.gene016750:intron | 40.0% |
!! | ATAACTTTGGTGGCATTGGT+TGG | + | chr5.2:72946149-72946168 | MS.gene016750:CDS | 40.0% |
!! | GAATTGTCTTAGGTTGGTGA+TGG | + | chr5.2:72945397-72945416 | MS.gene016750:intron | 40.0% |
!! | TGCTATTTCTAGCGAGAGAT+AGG | + | chr5.2:72947014-72947033 | MS.gene016750:intron | 40.0% |
!!! | ATTTTGAAGCACAGCGTTCA+GGG | + | chr5.2:72944913-72944932 | MS.gene016750:CDS | 40.0% |
!!! | CCTAACCCTAATGTTTTGGT+TGG | + | chr5.2:72947929-72947948 | MS.gene016750:CDS | 40.0% |
!!! | CTCTATGATGGACCCTTTTA+GGG | - | chr5.2:72947826-72947845 | None:intergenic | 40.0% |
!!! | TATTTTGAAGCACAGCGTTC+AGG | + | chr5.2:72944912-72944931 | MS.gene016750:CDS | 40.0% |
AATCCTGGTTCAGATCTTGC+TGG | + | chr5.2:72945496-72945515 | MS.gene016750:CDS | 45.0% | |
AATGTGGAAAGAACTCCAGC+TGG | + | chr5.2:72947575-72947594 | MS.gene016750:CDS | 45.0% | |
ACCTCTGCCCACAAAACATT+TGG | - | chr5.2:72945292-72945311 | None:intergenic | 45.0% | |
AGCTGGAGTTCTTTCCACAT+TGG | - | chr5.2:72947576-72947595 | None:intergenic | 45.0% | |
AGCTGGGATGTCAAATATGC+AGG | + | chr5.2:72946187-72946206 | MS.gene016750:CDS | 45.0% | |
AGTCACATCTCCGTGTATTG+TGG | + | chr5.2:72947107-72947126 | MS.gene016750:intron | 45.0% | |
ATCCCAGCTGAACTCTGTTA+TGG | - | chr5.2:72946176-72946195 | None:intergenic | 45.0% | |
ATGGGCCTAGTTACCCTAAA+AGG | + | chr5.2:72947810-72947829 | MS.gene016750:CDS | 45.0% | |
CCTAAAAGGGTCCATCATAG+AGG | + | chr5.2:72947824-72947843 | MS.gene016750:CDS | 45.0% | |
CCTAATGTTGGAGAACCAAG+AGG | + | chr5.2:72946929-72946948 | MS.gene016750:intron | 45.0% | |
CTTGATGTTGTCATGTCCTC+TGG | - | chr5.2:72945451-72945470 | None:intergenic | 45.0% | |
GATCATTCTGCCCTCATTGA+TGG | + | chr5.2:72944969-72944988 | MS.gene016750:CDS | 45.0% | |
GCTGGCAAGTGTTTATTGCA+TGG | + | chr5.2:72947060-72947079 | MS.gene016750:intron | 45.0% | |
GTCCATAACAGAGTTCAGCT+GGG | + | chr5.2:72946171-72946190 | MS.gene016750:CDS | 45.0% | |
GTTGGAGAACCAAGAGGATA+TGG | + | chr5.2:72946935-72946954 | MS.gene016750:intron | 45.0% | |
TAAACACTTGCCAGCTGTGT+CGG | - | chr5.2:72947055-72947074 | None:intergenic | 45.0% | |
TCTCCAACTCATTGCTTCTC+AGG | + | chr5.2:72946210-72946229 | MS.gene016750:CDS | 45.0% | |
TGGGCCTAGTTACCCTAAAA+GGG | + | chr5.2:72947811-72947830 | MS.gene016750:CDS | 45.0% | |
TTTCTTTGGTCCATGTGGAG+TGG | + | chr5.2:72946655-72946674 | MS.gene016750:intron | 45.0% | |
! | CCTCTTGGTTCTCCAACATT+AGG | - | chr5.2:72946932-72946951 | None:intergenic | 45.0% |
! | TCCAAATGTTTTGTGGGCAG+AGG | + | chr5.2:72945288-72945307 | MS.gene016750:CDS | 45.0% |
! | TGTAGGTGGATTTGGTAGGA+GGG | + | chr5.2:72945092-72945111 | MS.gene016750:intron | 45.0% |
!! | ATGAGCTACTTAGTGGGCTA+TGG | + | chr5.2:72947791-72947810 | MS.gene016750:CDS | 45.0% |
!! | GTAGGAGGGTATTATGATGC+AGG | + | chr5.2:72945106-72945125 | MS.gene016750:CDS | 45.0% |
!! | TGAGCTACTTAGTGGGCTAT+GGG | + | chr5.2:72947792-72947811 | MS.gene016750:CDS | 45.0% |
!!! | CCTCTATGATGGACCCTTTT+AGG | - | chr5.2:72947827-72947846 | None:intergenic | 45.0% |
!!! | GTTTTGGTTGGAGCTTTGGT+TGG | + | chr5.2:72947941-72947960 | MS.gene016750:CDS | 45.0% |
!!! | TGGACCCTTTTAGGGTAACT+AGG | - | chr5.2:72947818-72947837 | None:intergenic | 45.0% |
!!! | AATAAAATGTAATTTTAAAA+AGG | + | chr5.2:72946987-72947006 | MS.gene016750:intron | 5.0% |
!!! | ATTTTATCATATAATTATTT+TGG | + | chr5.2:72946458-72946477 | MS.gene016750:intron | 5.0% |
!!! | TTTTATCATATAATTATTTT+GGG | + | chr5.2:72946459-72946478 | MS.gene016750:intron | 5.0% |
AAACACTTGCCAGCTGTGTC+GGG | - | chr5.2:72947054-72947073 | None:intergenic | 50.0% | |
CTTACAATCAACGCGTCGCT+TGG | + | chr5.2:72944943-72944962 | MS.gene016750:CDS | 50.0% | |
GGTCCATAACAGAGTTCAGC+TGG | + | chr5.2:72946170-72946189 | MS.gene016750:CDS | 50.0% | |
TCTCCAGCAAGATCTGAACC+AGG | - | chr5.2:72945502-72945521 | None:intergenic | 50.0% | |
! | AGTTACTATGCGTCGGTGAG+TGG | + | chr5.2:72946037-72946056 | MS.gene016750:CDS | 50.0% |
! | GTGTAGGTGGATTTGGTAGG+AGG | + | chr5.2:72945091-72945110 | MS.gene016750:intron | 50.0% |
! | TGCAAAGCTAAAGCACCACC+AGG | - | chr5.2:72946871-72946890 | None:intergenic | 50.0% |
! | TTGGTTGGAGCTTTGGTTGG+TGG | + | chr5.2:72947944-72947963 | MS.gene016750:CDS | 50.0% |
!! | CAAGCGACGCGTTGATTGTA+AGG | - | chr5.2:72944945-72944964 | None:intergenic | 50.0% |
!! | CTTTGGTTGGTGGTCCTGAT+TGG | + | chr5.2:72947954-72947973 | MS.gene016750:CDS | 50.0% |
!! | GGTGGCTTTATAAAGCCACG+TGG | - | chr5.2:72946089-72946108 | None:intergenic | 50.0% |
TGGAGAGACAGCAGCAGCTA+TGG | + | chr5.2:72945516-72945535 | MS.gene016750:CDS | 55.0% | |
! | AGTTGTTATGGGCTGCCACG+TGG | + | chr5.2:72946071-72946090 | MS.gene016750:CDS | 55.0% |
! | CGAGATTTTCCCGACACAGC+TGG | + | chr5.2:72947042-72947061 | MS.gene016750:intron | 55.0% |
! | TGCGTCGGTGAGTGGATACA+TGG | + | chr5.2:72946045-72946064 | MS.gene016750:CDS | 55.0% |
! | AGCATGCACGTGCTGCTGCC+TGG | + | chr5.2:72946850-72946869 | MS.gene016750:intron | 65.0% |
! | ATGCACGTGCTGCTGCCTGG+TGG | + | chr5.2:72946853-72946872 | MS.gene016750:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 72944789 | 72948135 | 72944789 | ID=MS.gene016750 |
chr5.2 | mRNA | 72944789 | 72948135 | 72944789 | ID=MS.gene016750.t1;Parent=MS.gene016750 |
chr5.2 | exon | 72944789 | 72945004 | 72944789 | ID=MS.gene016750.t1.exon1;Parent=MS.gene016750.t1 |
chr5.2 | CDS | 72944789 | 72945004 | 72944789 | ID=cds.MS.gene016750.t1;Parent=MS.gene016750.t1 |
chr5.2 | exon | 72945097 | 72945309 | 72945097 | ID=MS.gene016750.t1.exon2;Parent=MS.gene016750.t1 |
chr5.2 | CDS | 72945097 | 72945309 | 72945097 | ID=cds.MS.gene016750.t1;Parent=MS.gene016750.t1 |
chr5.2 | exon | 72945409 | 72945609 | 72945409 | ID=MS.gene016750.t1.exon3;Parent=MS.gene016750.t1 |
chr5.2 | CDS | 72945409 | 72945609 | 72945409 | ID=cds.MS.gene016750.t1;Parent=MS.gene016750.t1 |
chr5.2 | exon | 72945977 | 72946231 | 72945977 | ID=MS.gene016750.t1.exon4;Parent=MS.gene016750.t1 |
chr5.2 | CDS | 72945977 | 72946231 | 72945977 | ID=cds.MS.gene016750.t1;Parent=MS.gene016750.t1 |
chr5.2 | exon | 72947467 | 72948135 | 72947467 | ID=MS.gene016750.t1.exon5;Parent=MS.gene016750.t1 |
chr5.2 | CDS | 72947467 | 72948135 | 72947467 | ID=cds.MS.gene016750.t1;Parent=MS.gene016750.t1 |
Gene Sequence |
Protein sequence |