Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057880.t1 | XP_003616918.1 | 97.4 | 504 | 13 | 0 | 1 | 504 | 1 | 504 | 2.10E-300 | 1040.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057880.t1 | O48766 | 74.4 | 507 | 121 | 2 | 4 | 504 | 9 | 512 | 1.2e-235 | 817.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057880.t1 | G7K7J2 | 97.4 | 504 | 13 | 0 | 1 | 504 | 1 | 504 | 1.5e-300 | 1040.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057880 | MS.gene070498 | 0.881093 | 3.20E-70 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057880.t1 | MTR_5g085730 | 97.421 | 504 | 13 | 0 | 1 | 504 | 1 | 504 | 0.0 | 1036 |
| MS.gene057880.t1 | MTR_3g080190 | 82.150 | 493 | 88 | 0 | 12 | 504 | 21 | 513 | 0.0 | 856 |
| MS.gene057880.t1 | MTR_5g093590 | 71.888 | 498 | 139 | 1 | 4 | 500 | 7 | 504 | 0.0 | 749 |
| MS.gene057880.t1 | MTR_8g099410 | 60.515 | 466 | 182 | 1 | 31 | 496 | 28 | 491 | 0.0 | 620 |
| MS.gene057880.t1 | MTR_8g099410 | 60.515 | 466 | 182 | 1 | 31 | 496 | 28 | 491 | 0.0 | 618 |
| MS.gene057880.t1 | MTR_4g074960 | 59.488 | 469 | 187 | 3 | 29 | 496 | 26 | 492 | 0.0 | 582 |
| MS.gene057880.t1 | MTR_1g037340 | 50.515 | 485 | 226 | 6 | 17 | 496 | 6 | 481 | 1.32e-165 | 477 |
| MS.gene057880.t1 | MTR_5g010000 | 49.375 | 480 | 223 | 7 | 22 | 497 | 30 | 493 | 5.19e-154 | 449 |
| MS.gene057880.t1 | MTR_5g009970 | 47.983 | 471 | 226 | 6 | 30 | 497 | 40 | 494 | 3.33e-153 | 446 |
| MS.gene057880.t1 | MTR_3g105230 | 45.248 | 484 | 248 | 6 | 1 | 484 | 1 | 467 | 3.22e-146 | 428 |
| MS.gene057880.t1 | MTR_8g104820 | 47.009 | 468 | 235 | 8 | 31 | 494 | 30 | 488 | 6.68e-144 | 422 |
| MS.gene057880.t1 | MTR_3g023740 | 45.291 | 499 | 256 | 6 | 1 | 499 | 1 | 482 | 3.59e-143 | 420 |
| MS.gene057880.t1 | MTR_3g080810 | 46.681 | 467 | 236 | 8 | 31 | 494 | 35 | 491 | 1.95e-142 | 419 |
| MS.gene057880.t1 | MTR_3g117500 | 43.856 | 472 | 254 | 6 | 26 | 494 | 19 | 482 | 6.23e-141 | 414 |
| MS.gene057880.t1 | MTR_4g035955 | 45.182 | 467 | 241 | 7 | 29 | 494 | 12 | 464 | 2.78e-140 | 412 |
| MS.gene057880.t1 | MTR_4g035930 | 42.500 | 480 | 259 | 8 | 17 | 494 | 1 | 465 | 2.20e-136 | 402 |
| MS.gene057880.t1 | MTR_5g009970 | 46.963 | 428 | 208 | 6 | 73 | 497 | 9 | 420 | 4.63e-133 | 392 |
| MS.gene057880.t1 | MTR_3g010330 | 45.085 | 468 | 239 | 7 | 31 | 494 | 25 | 478 | 8.66e-132 | 391 |
| MS.gene057880.t1 | MTR_1g088190 | 45.435 | 471 | 225 | 9 | 31 | 498 | 39 | 480 | 9.54e-132 | 391 |
| MS.gene057880.t1 | MTR_4g035975 | 44.561 | 478 | 234 | 10 | 31 | 494 | 27 | 487 | 1.30e-131 | 391 |
| MS.gene057880.t1 | MTR_3g113720 | 44.798 | 471 | 246 | 9 | 32 | 497 | 58 | 519 | 1.72e-130 | 389 |
| MS.gene057880.t1 | MTR_8g075990 | 45.223 | 471 | 244 | 10 | 32 | 497 | 64 | 525 | 8.58e-126 | 377 |
| MS.gene057880.t1 | MTR_5g009970 | 45.232 | 409 | 205 | 6 | 92 | 497 | 1 | 393 | 8.67e-121 | 360 |
| MS.gene057880.t1 | MTR_2g028480 | 39.416 | 548 | 265 | 17 | 2 | 496 | 56 | 589 | 5.94e-102 | 319 |
| MS.gene057880.t1 | MTR_3g082440 | 38.911 | 496 | 261 | 17 | 27 | 496 | 112 | 591 | 3.28e-89 | 286 |
| MS.gene057880.t1 | MTR_5g009970 | 44.575 | 341 | 170 | 6 | 160 | 497 | 1 | 325 | 4.35e-89 | 276 |
| MS.gene057880.t1 | MTR_3g090540 | 36.454 | 502 | 274 | 17 | 29 | 502 | 105 | 589 | 7.74e-86 | 276 |
| MS.gene057880.t1 | MTR_1g088190 | 44.373 | 311 | 142 | 8 | 31 | 338 | 39 | 321 | 6.37e-71 | 229 |
| MS.gene057880.t1 | MTR_1g037320 | 55.280 | 161 | 71 | 1 | 92 | 252 | 1 | 160 | 1.55e-46 | 164 |
| MS.gene057880.t1 | MTR_1g037320 | 49.180 | 122 | 61 | 1 | 373 | 494 | 169 | 289 | 2.54e-34 | 131 |
| MS.gene057880.t1 | MTR_7g108925 | 45.283 | 159 | 86 | 1 | 340 | 498 | 43 | 200 | 6.71e-45 | 157 |
| MS.gene057880.t1 | MTR_0393s0050 | 42.857 | 140 | 80 | 0 | 340 | 479 | 20 | 159 | 1.15e-35 | 131 |
| MS.gene057880.t1 | MTR_4g128810 | 41.060 | 151 | 84 | 3 | 347 | 496 | 187 | 333 | 4.50e-27 | 112 |
| MS.gene057880.t1 | MTR_4g047570 | 33.333 | 114 | 55 | 3 | 280 | 393 | 2 | 94 | 1.08e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057880.t1 | AT2G32990 | 75.100 | 498 | 115 | 2 | 4 | 495 | 9 | 503 | 0.0 | 792 |
| MS.gene057880.t1 | AT1G64390 | 61.159 | 466 | 179 | 1 | 31 | 496 | 25 | 488 | 0.0 | 619 |
| MS.gene057880.t1 | AT4G11050 | 60.510 | 471 | 184 | 1 | 27 | 497 | 22 | 490 | 0.0 | 613 |
| MS.gene057880.t1 | AT4G11050 | 60.510 | 471 | 184 | 1 | 27 | 497 | 22 | 490 | 0.0 | 613 |
| MS.gene057880.t1 | AT4G11050 | 60.510 | 471 | 184 | 1 | 27 | 497 | 22 | 490 | 0.0 | 611 |
| MS.gene057880.t1 | AT1G48930 | 57.511 | 466 | 196 | 2 | 30 | 495 | 29 | 492 | 0.0 | 541 |
| MS.gene057880.t1 | AT2G44550 | 48.971 | 486 | 238 | 5 | 9 | 494 | 12 | 487 | 2.11e-161 | 467 |
| MS.gene057880.t1 | AT2G44540 | 48.262 | 489 | 244 | 5 | 9 | 497 | 12 | 491 | 2.53e-159 | 462 |
| MS.gene057880.t1 | AT2G44560 | 48.770 | 488 | 241 | 5 | 9 | 496 | 12 | 490 | 5.20e-159 | 461 |
| MS.gene057880.t1 | AT2G44570 | 47.336 | 488 | 248 | 6 | 10 | 496 | 12 | 491 | 6.82e-156 | 453 |
| MS.gene057880.t1 | AT1G70710 | 45.657 | 495 | 256 | 7 | 1 | 494 | 1 | 483 | 3.68e-148 | 433 |
| MS.gene057880.t1 | AT1G23210 | 45.380 | 487 | 256 | 6 | 9 | 494 | 6 | 483 | 3.23e-145 | 426 |
| MS.gene057880.t1 | AT1G02800 | 48.291 | 468 | 228 | 7 | 31 | 496 | 43 | 498 | 4.53e-145 | 426 |
| MS.gene057880.t1 | AT4G23560 | 48.739 | 476 | 222 | 8 | 26 | 497 | 18 | 475 | 9.77e-145 | 424 |
| MS.gene057880.t1 | AT4G02290 | 47.335 | 469 | 237 | 6 | 31 | 498 | 52 | 511 | 6.12e-144 | 423 |
| MS.gene057880.t1 | AT4G09740 | 47.899 | 476 | 226 | 8 | 26 | 497 | 18 | 475 | 2.48e-141 | 415 |
| MS.gene057880.t1 | AT4G39010 | 45.085 | 468 | 245 | 7 | 31 | 494 | 29 | 488 | 1.02e-140 | 414 |
| MS.gene057880.t1 | AT3G43860 | 43.976 | 498 | 256 | 8 | 3 | 496 | 5 | 483 | 2.40e-140 | 413 |
| MS.gene057880.t1 | AT3G43860 | 43.976 | 498 | 256 | 8 | 3 | 496 | 5 | 483 | 2.40e-140 | 413 |
| MS.gene057880.t1 | AT1G19940 | 46.970 | 462 | 235 | 7 | 31 | 491 | 48 | 500 | 3.19e-135 | 401 |
| MS.gene057880.t1 | AT1G19940 | 46.970 | 462 | 235 | 7 | 31 | 491 | 48 | 500 | 3.19e-135 | 401 |
| MS.gene057880.t1 | AT1G75680 | 47.046 | 457 | 232 | 7 | 32 | 487 | 58 | 505 | 5.55e-135 | 401 |
| MS.gene057880.t1 | AT4G39000 | 45.299 | 468 | 244 | 7 | 31 | 494 | 25 | 484 | 1.01e-133 | 396 |
| MS.gene057880.t1 | AT1G22880 | 42.887 | 485 | 258 | 10 | 16 | 494 | 5 | 476 | 1.74e-131 | 390 |
| MS.gene057880.t1 | AT1G71380 | 43.210 | 486 | 257 | 11 | 15 | 494 | 4 | 476 | 2.42e-130 | 387 |
| MS.gene057880.t1 | AT4G38990 | 43.002 | 493 | 260 | 10 | 13 | 494 | 5 | 487 | 1.44e-124 | 373 |
| MS.gene057880.t1 | AT4G02290 | 44.608 | 408 | 216 | 6 | 92 | 498 | 1 | 399 | 4.40e-112 | 338 |
| MS.gene057880.t1 | AT2G44570 | 44.500 | 400 | 213 | 6 | 10 | 408 | 12 | 403 | 4.54e-111 | 335 |
| MS.gene057880.t1 | AT1G22880 | 41.235 | 405 | 223 | 9 | 92 | 494 | 1 | 392 | 4.42e-104 | 317 |
| MS.gene057880.t1 | AT4G39010 | 43.716 | 366 | 195 | 6 | 31 | 392 | 29 | 387 | 4.71e-104 | 317 |
| MS.gene057880.t1 | AT1G19940 | 45.055 | 364 | 195 | 5 | 31 | 393 | 48 | 407 | 4.63e-97 | 300 |
| MS.gene057880.t1 | AT5G49720 | 41.400 | 500 | 248 | 17 | 31 | 501 | 108 | 591 | 5.27e-94 | 298 |
| MS.gene057880.t1 | AT1G65610 | 37.347 | 490 | 268 | 17 | 31 | 496 | 116 | 590 | 1.85e-86 | 278 |
| MS.gene057880.t1 | AT4G24260 | 40.808 | 495 | 248 | 17 | 31 | 496 | 108 | 586 | 8.71e-86 | 276 |
| MS.gene057880.t1 | AT4G38990 | 40.720 | 361 | 184 | 6 | 13 | 372 | 5 | 336 | 1.46e-79 | 252 |
| MS.gene057880.t1 | AT1G22880 | 45.714 | 315 | 154 | 8 | 16 | 324 | 5 | 308 | 2.51e-78 | 249 |
| MS.gene057880.t1 | AT4G24260 | 38.619 | 391 | 202 | 14 | 31 | 393 | 108 | 488 | 3.37e-53 | 187 |
| MS.gene057880.t1 | AT4G24260 | 39.660 | 353 | 183 | 11 | 31 | 358 | 108 | 455 | 4.56e-53 | 186 |
Find 96 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACAAGTTGATTACATTT+TGG | 0.114624 | 5.3:+69365481 | MS.gene057880:CDS |
| ACACAATGGAAGCAATTAAA+TGG | 0.182204 | 5.3:+69362980 | MS.gene057880:CDS |
| AAGGAGAATAAAGGGTTTAT+TGG | 0.201878 | 5.3:+69365596 | MS.gene057880:CDS |
| GCAGGTGATCATGTAAAATT+TGG | 0.275934 | 5.3:+69362871 | MS.gene057880:CDS |
| TCAAAATTGTCTTGCCAATC+AGG | 0.280992 | 5.3:-69365698 | None:intergenic |
| ATGGGCATAGTTACCCTAAA+AGG | 0.288813 | 5.3:+69365540 | MS.gene057880:CDS |
| GGCTGCCACGTGGCTTTATA+AGG | 0.325090 | 5.3:+69363811 | MS.gene057880:CDS |
| AGATCCTAACCCTAATGTTT+TGG | 0.327088 | 5.3:+69365655 | MS.gene057880:CDS |
| GCATATTGAAGACAATAAAA+TGG | 0.327204 | 5.3:+69365802 | MS.gene057880:CDS |
| AACAATGTTGCATGAGAAAA+TGG | 0.330935 | 5.3:-69362551 | None:intergenic |
| ATGTCATATAAGGAGAATAA+AGG | 0.332352 | 5.3:+69365587 | MS.gene057880:CDS |
| GTACTCAAGGGTATGATAAT+TGG | 0.334494 | 5.3:+69365621 | MS.gene057880:CDS |
| TTTGTGTAGTTGTTTGAGTT+TGG | 0.335226 | 5.3:+69363698 | MS.gene057880:intron |
| TGTTATTGTGTAGGTGGATT+TGG | 0.335906 | 5.3:+69362831 | MS.gene057880:intron |
| ACTAAGTAGCTCATGTTCAT+AGG | 0.336832 | 5.3:-69365512 | None:intergenic |
| CAAAACTTAGAATTTCTTCA+TGG | 0.342767 | 5.3:-69365454 | None:intergenic |
| GATCATTCTGCTCTCATTGA+TGG | 0.350259 | 5.3:+69362714 | MS.gene057880:CDS |
| AAAGCTCCAACCAAAACATT+AGG | 0.350493 | 5.3:-69365665 | None:intergenic |
| CTTTGGTTGGTGGTCCTGAT+TGG | 0.363936 | 5.3:+69365684 | MS.gene057880:CDS |
| ACCTCTGCCCACAAAACATT+TGG | 0.367502 | 5.3:-69363036 | None:intergenic |
| AGCATCAATTATGTCATATA+AGG | 0.370317 | 5.3:+69365577 | MS.gene057880:CDS |
| TTACTGTGACAATGCTTTCA+TGG | 0.375820 | 5.3:+69362908 | MS.gene057880:CDS |
| AACGCTGTGCTTCAAAATAA+AGG | 0.388474 | 5.3:-69362653 | None:intergenic |
| TGTCATATAAGGAGAATAAA+GGG | 0.398718 | 5.3:+69365588 | MS.gene057880:CDS |
| CACAATGGAAGCAATTAAAT+GGG | 0.416525 | 5.3:+69362981 | MS.gene057880:CDS |
| GATTCATGGATGAGTTGTTA+TGG | 0.417460 | 5.3:+69363789 | MS.gene057880:CDS |
| CTTGATGTTGTCATGTCCTC+TGG | 0.421252 | 5.3:-69363197 | None:intergenic |
| ATTAACAATGCTAATAACTT+TGG | 0.421348 | 5.3:+69363866 | MS.gene057880:CDS |
| GCTAATAACTTTGGTGGCAC+TGG | 0.422916 | 5.3:+69363875 | MS.gene057880:CDS |
| ATTCATGGATGAGTTGTTAT+GGG | 0.425900 | 5.3:+69363790 | MS.gene057880:CDS |
| ATCCCAGCTGAACTCTGTTA+TGG | 0.429035 | 5.3:-69363903 | None:intergenic |
| TCTCCAACTCATTGCTTCTC+AGG | 0.431384 | 5.3:+69363940 | MS.gene057880:CDS |
| CAAGCGACGCGTTGATTGTA+AGG | 0.439174 | 5.3:-69362687 | None:intergenic |
| TGTAGGTGGATTTGGTTGGA+GGG | 0.441853 | 5.3:+69362839 | MS.gene057880:intron |
| GTGTAGGTGGATTTGGTTGG+AGG | 0.449210 | 5.3:+69362838 | MS.gene057880:intron |
| AATCCTGGTTCAGATCTTGC+TGG | 0.454479 | 5.3:+69363245 | MS.gene057880:CDS |
| TAAGAATGGTGAAGATGAAA+AGG | 0.458583 | 5.3:-69362581 | None:intergenic |
| ATGAGCTACTTAGTGGGCTA+TGG | 0.459703 | 5.3:+69365521 | MS.gene057880:CDS |
| ATCTAAATACTCTTCTTTGT+CGG | 0.460194 | 5.3:-69363837 | None:intergenic |
| GAGTTTGGAGACAAGTATAG+AGG | 0.461932 | 5.3:+69363713 | MS.gene057880:CDS |
| GGTCCATAACAGAGTTCAGC+TGG | 0.465205 | 5.3:+69363900 | MS.gene057880:CDS |
| TGCGTCGGTGAGTGGATTCA+TGG | 0.471209 | 5.3:+69363775 | MS.gene057880:CDS |
| GGAAAATATGATGCAAGTGT+TGG | 0.472006 | 5.3:+69363734 | MS.gene057880:CDS |
| GGGTTTATTGGTTGTACTCA+AGG | 0.473441 | 5.3:+69365608 | MS.gene057880:CDS |
| AACAATGCTAATAACTTTGG+TGG | 0.473656 | 5.3:+69363869 | MS.gene057880:CDS |
| AAGCTCCAACCAAAACATTA+GGG | 0.475626 | 5.3:-69365664 | None:intergenic |
| TGGAGAGACAGCAGCAGCTA+TGG | 0.477469 | 5.3:+69363265 | MS.gene057880:CDS |
| GTTGGAGGGTATTATGATGC+AGG | 0.477816 | 5.3:+69362853 | MS.gene057880:CDS |
| GAATATTTGCAAGAAATTGA+AGG | 0.478166 | 5.3:+69362940 | MS.gene057880:CDS |
| GTGATATACTTGACCAATAT+AGG | 0.486868 | 5.3:+69365228 | MS.gene057880:CDS |
| CCAACCAAAACATTAGGGTT+AGG | 0.487034 | 5.3:-69365659 | None:intergenic |
| CTCATTGATGGTCTAGAACA+AGG | 0.493370 | 5.3:+69362726 | MS.gene057880:CDS |
| TTGGTTGGAGCTTTGGTTGG+TGG | 0.496064 | 5.3:+69365674 | MS.gene057880:CDS |
| TGTAAAATTTGGTTTACCAA+TGG | 0.496239 | 5.3:+69362882 | MS.gene057880:CDS |
| TACTGTGACAATGCTTTCAT+GGG | 0.500919 | 5.3:+69362909 | MS.gene057880:CDS |
| AGCTGGGATGTCAAATATGC+AGG | 0.502495 | 5.3:+69363917 | MS.gene057880:CDS |
| TATGAACATGAGCTACTTAG+TGG | 0.502664 | 5.3:+69365514 | MS.gene057880:CDS |
| TAATTGATGCTCCTCTATGA+TGG | 0.503574 | 5.3:-69365565 | None:intergenic |
| CTTACAATCAACGCGTCGCT+TGG | 0.503904 | 5.3:+69362688 | MS.gene057880:CDS |
| AGCTGGAGTTCTTTCCACAT+TGG | 0.508311 | 5.3:-69365303 | None:intergenic |
| CTAAGTAGCTCATGTTCATA+GGG | 0.511542 | 5.3:-69365511 | None:intergenic |
| AAGATAGATGAAAACAATCC+TGG | 0.513053 | 5.3:+69363230 | MS.gene057880:CDS |
| GTGACACTGATCATTATTGT+TGG | 0.516338 | 5.3:+69363168 | MS.gene057880:CDS |
| TTGAATGTTAGTCGTAAGAA+TGG | 0.521671 | 5.3:-69362595 | None:intergenic |
| AGTTACTATGCGTCGGTGAG+TGG | 0.525539 | 5.3:+69363767 | MS.gene057880:CDS |
| TGGGCATAGTTACCCTAAAA+GGG | 0.540813 | 5.3:+69365541 | MS.gene057880:CDS |
| TTGCAAGAAATTGAAGGTGC+TGG | 0.541661 | 5.3:+69362946 | MS.gene057880:CDS |
| ATAACTTTGGTGGCACTGGT+TGG | 0.542812 | 5.3:+69363879 | MS.gene057880:CDS |
| ATTGTGTAGGTGGATTTGGT+TGG | 0.546260 | 5.3:+69362835 | MS.gene057880:intron |
| GTATGATAATTGGTACAGTA+AGG | 0.548590 | 5.3:+69365631 | MS.gene057880:CDS |
| GGTTTATTGGTTGTACTCAA+GGG | 0.549775 | 5.3:+69365609 | MS.gene057880:CDS |
| CTGACATATAGTAATCCAGC+TGG | 0.552001 | 5.3:-69365320 | None:intergenic |
| TTACCTGAGAAGCAATGAGT+TGG | 0.557016 | 5.3:-69363943 | None:intergenic |
| TGAGCTACTTAGTGGGCTAT+GGG | 0.561139 | 5.3:+69365522 | MS.gene057880:CDS |
| TCATTGATGGTCTAGAACAA+GGG | 0.565728 | 5.3:+69362727 | MS.gene057880:CDS |
| AATGTGGAAAGAACTCCAGC+TGG | 0.567462 | 5.3:+69365305 | MS.gene057880:CDS |
| CCTAAAAGGGTCCATCATAG+AGG | 0.567742 | 5.3:+69365554 | MS.gene057880:CDS |
| TAAATACTCTTCTTTGTCGG+TGG | 0.571018 | 5.3:-69363834 | None:intergenic |
| ATTGTCACAGTAAATGCCAT+TGG | 0.581317 | 5.3:-69362898 | None:intergenic |
| AAAAGTAAATGAGAGTAATG+TGG | 0.585609 | 5.3:-69363320 | None:intergenic |
| GAATTGTCTTAGGTTGGTGA+TGG | 0.590307 | 5.3:+69363146 | MS.gene057880:intron |
| GATTTAGTACCTGTTGAGCA+TGG | 0.594061 | 5.3:-69363346 | None:intergenic |
| CATTGATGGTCTAGAACAAG+GGG | 0.608466 | 5.3:+69362728 | MS.gene057880:CDS |
| GATTACTATATGTCAGACAA+TGG | 0.612919 | 5.3:+69365327 | MS.gene057880:CDS |
| AGTGAAAAGTTACTATGCGT+CGG | 0.625933 | 5.3:+69363760 | MS.gene057880:CDS |
| TCTCCAGCAAGATCTGAACC+AGG | 0.626113 | 5.3:-69363248 | None:intergenic |
| ATGAACATGAGCTACTTAGT+GGG | 0.635629 | 5.3:+69365515 | MS.gene057880:CDS |
| GTCCATAACAGAGTTCAGCT+GGG | 0.646191 | 5.3:+69363901 | MS.gene057880:CDS |
| TTATTGTTGGCAAAGACCAG+AGG | 0.655563 | 5.3:+69363181 | MS.gene057880:CDS |
| AAACATCAATGGAACCAATG+TGG | 0.661851 | 5.3:+69365289 | MS.gene057880:CDS |
| GCTGTGCTTCAAAATAAAGG+AGG | 0.685635 | 5.3:-69362650 | None:intergenic |
| AGTTGTTATGGGCTGCCACG+TGG | 0.694285 | 5.3:+69363801 | MS.gene057880:CDS |
| ACTGTGACAATGCTTTCATG+GGG | 0.697045 | 5.3:+69362910 | MS.gene057880:CDS |
| ACAATGGAAGCAATTAAATG+GGG | 0.705575 | 5.3:+69362982 | MS.gene057880:CDS |
| TGGTGAATTACAACACACAA+TGG | 0.711977 | 5.3:+69362966 | MS.gene057880:CDS |
| GGTGGCCTTATAAAGCCACG+TGG | 0.802325 | 5.3:-69363816 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATATTATATTAAAA+AGG | + | chr5.3:69364215-69364234 | MS.gene057880:intron | 0.0% |
| !! | TATATAGATGTATTATCTTT+AGG | + | chr5.3:69364520-69364539 | MS.gene057880:intron | 15.0% |
| !! | TTCTTTGATTATCTTATTAT+TGG | - | chr5.3:69365038-69365057 | None:intergenic | 15.0% |
| !! | TTTAAAAACTTTGGATAAAA+TGG | - | chr5.3:69363987-69364006 | None:intergenic | 15.0% |
| !!! | AAACCATTTTTTAAAAACTT+TGG | - | chr5.3:69363996-69364015 | None:intergenic | 15.0% |
| !!! | ATTTTTAATTGAATTGTCTT+AGG | + | chr5.3:69363136-69363155 | MS.gene057880:intron | 15.0% |
| !!! | GAATGACATTTTAAAAATAA+TGG | - | chr5.3:69364478-69364497 | None:intergenic | 15.0% |
| !!! | TATCCAAAGTTTTTAAAAAA+TGG | + | chr5.3:69363990-69364009 | MS.gene057880:intron | 15.0% |
| !!! | TATTTTTAAAATGTCATTCA+TGG | + | chr5.3:69364479-69364498 | MS.gene057880:intron | 15.0% |
| !! | ATGTAACAAAATTAAAGAAG+TGG | - | chr5.3:69363092-69363111 | None:intergenic | 20.0% |
| !! | ATTAACAATGCTAATAACTT+TGG | + | chr5.3:69363866-69363885 | MS.gene057880:CDS | 20.0% |
| !! | CACAAAAACAAAACATATAT+TGG | - | chr5.3:69363684-69363703 | None:intergenic | 20.0% |
| !! | TATTCAACTTTATCTAGATT+TGG | + | chr5.3:69364416-69364435 | MS.gene057880:intron | 20.0% |
| !! | TTTACTAATTTGAAAACGAT+AGG | + | chr5.3:69364440-69364459 | MS.gene057880:intron | 20.0% |
| !!! | AAGACAATTTTGAAGATAAA+AGG | + | chr5.3:69365708-69365727 | MS.gene057880:CDS | 20.0% |
| !!! | ATGCAACTATAATATTGATT+TGG | + | chr5.3:69364046-69364065 | MS.gene057880:intron | 20.0% |
| !!! | ATTTGTTTTCTTAAACACAA+TGG | - | chr5.3:69363300-69363319 | None:intergenic | 20.0% |
| !!! | GAATTTAATTTGATTTGACT+AGG | + | chr5.3:69363559-69363578 | MS.gene057880:intron | 20.0% |
| !!! | GCTTAATATTTTCAAACAAA+AGG | - | chr5.3:69363611-69363630 | None:intergenic | 20.0% |
| !!! | TGACATCAAAGATTTTAATA+TGG | - | chr5.3:69364023-69364042 | None:intergenic | 20.0% |
| !!! | TTTTTCCTCAAAATTTTCTT+TGG | + | chr5.3:69364371-69364390 | MS.gene057880:intron | 20.0% |
| ! | AAAAGTAAATGAGAGTAATG+TGG | - | chr5.3:69363323-69363342 | None:intergenic | 25.0% |
| ! | AAGAAGTGGAATTGATTAAT+TGG | - | chr5.3:69363078-69363097 | None:intergenic | 25.0% |
| ! | AATATTCTTTAGATCTGTGA+AGG | + | chr5.3:69364292-69364311 | MS.gene057880:intron | 25.0% |
| ! | AGCATCAATTATGTCATATA+AGG | + | chr5.3:69365577-69365596 | MS.gene057880:CDS | 25.0% |
| ! | ATCTAAATACTCTTCTTTGT+CGG | - | chr5.3:69363840-69363859 | None:intergenic | 25.0% |
| ! | ATGTCATATAAGGAGAATAA+AGG | + | chr5.3:69365587-69365606 | MS.gene057880:CDS | 25.0% |
| ! | CAAAACTTAGAATTTCTTCA+TGG | - | chr5.3:69365457-69365476 | None:intergenic | 25.0% |
| ! | GAATATTTGCAAGAAATTGA+AGG | + | chr5.3:69362940-69362959 | MS.gene057880:CDS | 25.0% |
| ! | GGTTTAAAAACTGCAAAAAA+TGG | - | chr5.3:69365187-69365206 | None:intergenic | 25.0% |
| ! | TGTCATATAAGGAGAATAAA+GGG | + | chr5.3:69365588-69365607 | MS.gene057880:CDS | 25.0% |
| ! | TTAATTGAATTGTCTTAGGT+TGG | + | chr5.3:69363140-69363159 | MS.gene057880:intron | 25.0% |
| !! | AATTAAAGTGATGTTGCTTA+TGG | + | chr5.3:69364631-69364650 | MS.gene057880:intron | 25.0% |
| !! | TGTAAAATTTGGTTTACCAA+TGG | + | chr5.3:69362882-69362901 | MS.gene057880:CDS | 25.0% |
| !!! | AACATTCAAGCTTTTGATTA+TGG | + | chr5.3:69362609-69362628 | MS.gene057880:CDS | 25.0% |
| !!! | ATATTGTCACTTCAATTTTG+AGG | - | chr5.3:69363515-69363534 | None:intergenic | 25.0% |
| !!! | ATCACAAGTTGATTACATTT+TGG | + | chr5.3:69365481-69365500 | MS.gene057880:CDS | 25.0% |
| !!! | TCACAAGTTGATTACATTTT+GGG | + | chr5.3:69365482-69365501 | MS.gene057880:CDS | 25.0% |
| AACAATGCTAATAACTTTGG+TGG | + | chr5.3:69363869-69363888 | MS.gene057880:CDS | 30.0% | |
| AACAATGTTGCATGAGAAAA+TGG | - | chr5.3:69362554-69362573 | None:intergenic | 30.0% | |
| AAGATAGATGAAAACAATCC+TGG | + | chr5.3:69363230-69363249 | MS.gene057880:CDS | 30.0% | |
| AAGGAGAATAAAGGGTTTAT+TGG | + | chr5.3:69365596-69365615 | MS.gene057880:CDS | 30.0% | |
| AATCAAAAACTCACATGTCA+TGG | + | chr5.3:69365419-69365438 | MS.gene057880:CDS | 30.0% | |
| ACAATGGAAGCAATTAAATG+GGG | + | chr5.3:69362982-69363001 | MS.gene057880:CDS | 30.0% | |
| ACACAATGGAAGCAATTAAA+TGG | + | chr5.3:69362980-69362999 | MS.gene057880:CDS | 30.0% | |
| ACTCTTATCTGTTAAGTTCT+TGG | + | chr5.3:69364329-69364348 | MS.gene057880:intron | 30.0% | |
| ATTCATGGATGAGTTGTTAT+GGG | + | chr5.3:69363790-69363809 | MS.gene057880:CDS | 30.0% | |
| CACAATGGAAGCAATTAAAT+GGG | + | chr5.3:69362981-69363000 | MS.gene057880:CDS | 30.0% | |
| CGTCAAACATTAAAACATGT+TGG | + | chr5.3:69363460-69363479 | MS.gene057880:intron | 30.0% | |
| CTATGTACATGTTATTGTGT+AGG | + | chr5.3:69362822-69362841 | MS.gene057880:intron | 30.0% | |
| GAACTTAACAGATAAGAGTA+TGG | - | chr5.3:69364328-69364347 | None:intergenic | 30.0% | |
| GAGACATCATTAAAAGTGAT+CGG | + | chr5.3:69364960-69364979 | MS.gene057880:intron | 30.0% | |
| GATTACTATATGTCAGACAA+TGG | + | chr5.3:69365327-69365346 | MS.gene057880:CDS | 30.0% | |
| GTATGATAATTGGTACAGTA+AGG | + | chr5.3:69365631-69365650 | MS.gene057880:CDS | 30.0% | |
| GTGATATACTTGACCAATAT+AGG | + | chr5.3:69365228-69365247 | MS.gene057880:CDS | 30.0% | |
| TAAGAATGGTGAAGATGAAA+AGG | - | chr5.3:69362584-69362603 | None:intergenic | 30.0% | |
| TATATCATTCCATATCCTCT+TGG | - | chr5.3:69364677-69364696 | None:intergenic | 30.0% | |
| TATATGTACCAACATCTTGT+TGG | + | chr5.3:69363437-69363456 | MS.gene057880:intron | 30.0% | |
| TGTCTCAACAAAAACATCAA+TGG | + | chr5.3:69365278-69365297 | MS.gene057880:CDS | 30.0% | |
| TTGAATGTTAGTCGTAAGAA+TGG | - | chr5.3:69362598-69362617 | None:intergenic | 30.0% | |
| TTGCAAAAAGAGCTACTAAA+GGG | - | chr5.3:69365775-69365794 | None:intergenic | 30.0% | |
| TTTGCAAAAAGAGCTACTAA+AGG | - | chr5.3:69365776-69365795 | None:intergenic | 30.0% | |
| ! | AAAATTTTCTTTGGTCCATG+TGG | + | chr5.3:69364380-69364399 | MS.gene057880:intron | 30.0% |
| ! | ATGACATGTGAGTTTTTGAT+TGG | - | chr5.3:69365420-69365439 | None:intergenic | 30.0% |
| ! | ATGGACCAAAGAAAATTTTG+AGG | - | chr5.3:69364379-69364398 | None:intergenic | 30.0% |
| ! | GAACAATTTTATGCAAACTG+AGG | + | chr5.3:69365730-69365749 | MS.gene057880:CDS | 30.0% |
| ! | TATGTTTCTTGTGTTTTGCT+TGG | - | chr5.3:69365208-69365227 | None:intergenic | 30.0% |
| ! | TTTGTGTAGTTGTTTGAGTT+TGG | + | chr5.3:69363698-69363717 | MS.gene057880:intron | 30.0% |
| !! | ACTGCTCTTTTAAAAATGGT+TGG | + | chr5.3:69364932-69364951 | MS.gene057880:intron | 30.0% |
| !! | CTCTTTTAAAAATGGTTGGA+AGG | + | chr5.3:69364936-69364955 | MS.gene057880:intron | 30.0% |
| !! | TAGCACTGCTCTTTTAAAAA+TGG | + | chr5.3:69364928-69364947 | MS.gene057880:intron | 30.0% |
| AAACATCAATGGAACCAATG+TGG | + | chr5.3:69365289-69365308 | MS.gene057880:CDS | 35.0% | |
| AAAGCTCCAACCAAAACATT+AGG | - | chr5.3:69365668-69365687 | None:intergenic | 35.0% | |
| AACGCTGTGCTTCAAAATAA+AGG | - | chr5.3:69362656-69362675 | None:intergenic | 35.0% | |
| AAGCTCCAACCAAAACATTA+GGG | - | chr5.3:69365667-69365686 | None:intergenic | 35.0% | |
| ACTAAGTAGCTCATGTTCAT+AGG | - | chr5.3:69365515-69365534 | None:intergenic | 35.0% | |
| AGTGAAAAGTTACTATGCGT+CGG | + | chr5.3:69363760-69363779 | MS.gene057880:CDS | 35.0% | |
| ATGAACATGAGCTACTTAGT+GGG | + | chr5.3:69365515-69365534 | MS.gene057880:CDS | 35.0% | |
| ATTGTCACAGTAAATGCCAT+TGG | - | chr5.3:69362901-69362920 | None:intergenic | 35.0% | |
| CTAAGTAGCTCATGTTCATA+GGG | - | chr5.3:69365514-69365533 | None:intergenic | 35.0% | |
| GATTCATGGATGAGTTGTTA+TGG | + | chr5.3:69363789-69363808 | MS.gene057880:CDS | 35.0% | |
| GCAGGTGATCATGTAAAATT+TGG | + | chr5.3:69362871-69362890 | MS.gene057880:CDS | 35.0% | |
| GGAAAATATGATGCAAGTGT+TGG | + | chr5.3:69363734-69363753 | MS.gene057880:CDS | 35.0% | |
| GTGACACTGATCATTATTGT+TGG | + | chr5.3:69363168-69363187 | MS.gene057880:CDS | 35.0% | |
| TAAATACTCTTCTTTGTCGG+TGG | - | chr5.3:69363837-69363856 | None:intergenic | 35.0% | |
| TAATTGATGCTCCTCTATGA+TGG | - | chr5.3:69365568-69365587 | None:intergenic | 35.0% | |
| TACTGTGACAATGCTTTCAT+GGG | + | chr5.3:69362909-69362928 | MS.gene057880:CDS | 35.0% | |
| TATGAACATGAGCTACTTAG+TGG | + | chr5.3:69365514-69365533 | MS.gene057880:CDS | 35.0% | |
| TCAAAATTGTCTTGCCAATC+AGG | - | chr5.3:69365701-69365720 | None:intergenic | 35.0% | |
| TGCAAAAAGAGCTACTAAAG+GGG | - | chr5.3:69365774-69365793 | None:intergenic | 35.0% | |
| TGGTGAATTACAACACACAA+TGG | + | chr5.3:69362966-69362985 | MS.gene057880:CDS | 35.0% | |
| TGTACATGTTATTGTGTAGG+TGG | + | chr5.3:69362825-69362844 | MS.gene057880:intron | 35.0% | |
| TTACTGTGACAATGCTTTCA+TGG | + | chr5.3:69362908-69362927 | MS.gene057880:CDS | 35.0% | |
| TTAGTCATTGACAAAGCTAG+TGG | + | chr5.3:69365002-69365021 | MS.gene057880:intron | 35.0% | |
| ! | ACACTAGTCCAAATGTTTTG+TGG | + | chr5.3:69363028-69363047 | MS.gene057880:CDS | 35.0% |
| ! | AGATCCTAACCCTAATGTTT+TGG | + | chr5.3:69365655-69365674 | MS.gene057880:CDS | 35.0% |
| ! | CACTAGTCCAAATGTTTTGT+GGG | + | chr5.3:69363029-69363048 | MS.gene057880:CDS | 35.0% |
| ! | GCTTGATGTCACTTCAATTA+CGG | - | chr5.3:69364096-69364115 | None:intergenic | 35.0% |
| ! | GGTTTATTGGTTGTACTCAA+GGG | + | chr5.3:69365609-69365628 | MS.gene057880:CDS | 35.0% |
| ! | GTACTCAAGGGTATGATAAT+TGG | + | chr5.3:69365621-69365640 | MS.gene057880:CDS | 35.0% |
| ! | TCATTGATGGTCTAGAACAA+GGG | + | chr5.3:69362727-69362746 | MS.gene057880:CDS | 35.0% |
| ! | TGTCACTTCAATTACGGTTA+TGG | - | chr5.3:69364090-69364109 | None:intergenic | 35.0% |
| ! | TGTTATTGTGTAGGTGGATT+TGG | + | chr5.3:69362831-69362850 | MS.gene057880:intron | 35.0% |
| !! | AATAAAGGAGGCTTTTTGAG+AGG | - | chr5.3:69362641-69362660 | None:intergenic | 35.0% |
| !! | ACTCTGCTTTTGACCTATAT+TGG | - | chr5.3:69365244-69365263 | None:intergenic | 35.0% |
| !! | ATAAAGGAGGCTTTTTGAGA+GGG | - | chr5.3:69362640-69362659 | None:intergenic | 35.0% |
| !!! | TAATGTTTTGGTTGGAGCTT+TGG | + | chr5.3:69365667-69365686 | MS.gene057880:CDS | 35.0% |
| ACTGTGACAATGCTTTCATG+GGG | + | chr5.3:69362910-69362929 | MS.gene057880:CDS | 40.0% | |
| ATGGGCATAGTTACCCTAAA+AGG | + | chr5.3:69365540-69365559 | MS.gene057880:CDS | 40.0% | |
| CAAAAACTCACATGTCATGG+AGG | + | chr5.3:69365422-69365441 | MS.gene057880:CDS | 40.0% | |
| CCAACCAAAACATTAGGGTT+AGG | - | chr5.3:69365662-69365681 | None:intergenic | 40.0% | |
| CGGAGATGTGACTGAAAAAT+AGG | - | chr5.3:69364830-69364849 | None:intergenic | 40.0% | |
| CTGACATATAGTAATCCAGC+TGG | - | chr5.3:69365323-69365342 | None:intergenic | 40.0% | |
| CTTATGGTTGAGCCTAATGT+TGG | + | chr5.3:69364647-69364666 | MS.gene057880:intron | 40.0% | |
| GAGTTTGGAGACAAGTATAG+AGG | + | chr5.3:69363713-69363732 | MS.gene057880:CDS | 40.0% | |
| GATCATTCTGCTCTCATTGA+TGG | + | chr5.3:69362714-69362733 | MS.gene057880:CDS | 40.0% | |
| GATTTAGTACCTGTTGAGCA+TGG | - | chr5.3:69363349-69363368 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATACA+CGG | - | chr5.3:69364850-69364869 | None:intergenic | 40.0% | |
| GCTGTGCTTCAAAATAAAGG+AGG | - | chr5.3:69362653-69362672 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr5.3:69364858-69364877 | MS.gene057880:intron | 40.0% | |
| TAGAAATATGCCACTCCACA+TGG | - | chr5.3:69364398-69364417 | None:intergenic | 40.0% | |
| TCATCACTTAGTGTGTGTGA+TGG | - | chr5.3:69364118-69364137 | None:intergenic | 40.0% | |
| TGGGCATAGTTACCCTAAAA+GGG | + | chr5.3:69365541-69365560 | MS.gene057880:CDS | 40.0% | |
| TTACCTGAGAAGCAATGAGT+TGG | - | chr5.3:69363946-69363965 | None:intergenic | 40.0% | |
| TTATTGTTGGCAAAGACCAG+AGG | + | chr5.3:69363181-69363200 | MS.gene057880:CDS | 40.0% | |
| ! | ACTTTTACACCATGCTCAAC+AGG | + | chr5.3:69363337-69363356 | MS.gene057880:CDS | 40.0% |
| ! | ATTGTGTAGGTGGATTTGGT+TGG | + | chr5.3:69362835-69362854 | MS.gene057880:intron | 40.0% |
| ! | CATTGATGGTCTAGAACAAG+GGG | + | chr5.3:69362728-69362747 | MS.gene057880:CDS | 40.0% |
| ! | CTCATTGATGGTCTAGAACA+AGG | + | chr5.3:69362726-69362745 | MS.gene057880:CDS | 40.0% |
| ! | GGGTTTATTGGTTGTACTCA+AGG | + | chr5.3:69365608-69365627 | MS.gene057880:CDS | 40.0% |
| ! | TTGCAAGAAATTGAAGGTGC+TGG | + | chr5.3:69362946-69362965 | MS.gene057880:CDS | 40.0% |
| !! | GAATTGTCTTAGGTTGGTGA+TGG | + | chr5.3:69363146-69363165 | MS.gene057880:intron | 40.0% |
| !! | TGCTATTTCTAGCGAGAGAT+AGG | + | chr5.3:69364744-69364763 | MS.gene057880:intron | 40.0% |
| !!! | ATTTTGAAGCACAGCGTTCA+GGG | + | chr5.3:69362658-69362677 | MS.gene057880:CDS | 40.0% |
| !!! | CCTAACCCTAATGTTTTGGT+TGG | + | chr5.3:69365659-69365678 | MS.gene057880:CDS | 40.0% |
| !!! | CTCTATGATGGACCCTTTTA+GGG | - | chr5.3:69365556-69365575 | None:intergenic | 40.0% |
| !!! | TATTTTGAAGCACAGCGTTC+AGG | + | chr5.3:69362657-69362676 | MS.gene057880:CDS | 40.0% |
| AATCCTGGTTCAGATCTTGC+TGG | + | chr5.3:69363245-69363264 | MS.gene057880:CDS | 45.0% | |
| AATGTGGAAAGAACTCCAGC+TGG | + | chr5.3:69365305-69365324 | MS.gene057880:CDS | 45.0% | |
| ACCTCTGCCCACAAAACATT+TGG | - | chr5.3:69363039-69363058 | None:intergenic | 45.0% | |
| AGCTGGAGTTCTTTCCACAT+TGG | - | chr5.3:69365306-69365325 | None:intergenic | 45.0% | |
| AGCTGGGATGTCAAATATGC+AGG | + | chr5.3:69363917-69363936 | MS.gene057880:CDS | 45.0% | |
| AGTCACATCTCCGTGTATTG+TGG | + | chr5.3:69364837-69364856 | MS.gene057880:intron | 45.0% | |
| ATCCCAGCTGAACTCTGTTA+TGG | - | chr5.3:69363906-69363925 | None:intergenic | 45.0% | |
| CCTAAAAGGGTCCATCATAG+AGG | + | chr5.3:69365554-69365573 | MS.gene057880:CDS | 45.0% | |
| CCTAATGTTGGAGAACCAAG+AGG | + | chr5.3:69364659-69364678 | MS.gene057880:intron | 45.0% | |
| CTTGATGTTGTCATGTCCTC+TGG | - | chr5.3:69363200-69363219 | None:intergenic | 45.0% | |
| GCTGGCAAGTGTTTATTGCA+TGG | + | chr5.3:69364790-69364809 | MS.gene057880:intron | 45.0% | |
| GTCCATAACAGAGTTCAGCT+GGG | + | chr5.3:69363901-69363920 | MS.gene057880:CDS | 45.0% | |
| GTTGGAGAACCAAGAGGATA+TGG | + | chr5.3:69364665-69364684 | MS.gene057880:intron | 45.0% | |
| GTTTGACGCCAACAAGATGT+TGG | - | chr5.3:69363448-69363467 | None:intergenic | 45.0% | |
| TAAACACTTGCCAGCTGTGT+CGG | - | chr5.3:69364785-69364804 | None:intergenic | 45.0% | |
| TCTCCAACTCATTGCTTCTC+AGG | + | chr5.3:69363940-69363959 | MS.gene057880:CDS | 45.0% | |
| TTTCTTTGGTCCATGTGGAG+TGG | + | chr5.3:69364385-69364404 | MS.gene057880:intron | 45.0% | |
| ! | CCTCTTGGTTCTCCAACATT+AGG | - | chr5.3:69364662-69364681 | None:intergenic | 45.0% |
| ! | GCTAATAACTTTGGTGGCAC+TGG | + | chr5.3:69363875-69363894 | MS.gene057880:CDS | 45.0% |
| ! | TCCAAATGTTTTGTGGGCAG+AGG | + | chr5.3:69363035-69363054 | MS.gene057880:CDS | 45.0% |
| ! | TGTAGGTGGATTTGGTTGGA+GGG | + | chr5.3:69362839-69362858 | MS.gene057880:intron | 45.0% |
| !! | ATAACTTTGGTGGCACTGGT+TGG | + | chr5.3:69363879-69363898 | MS.gene057880:CDS | 45.0% |
| !! | ATGAGCTACTTAGTGGGCTA+TGG | + | chr5.3:69365521-69365540 | MS.gene057880:CDS | 45.0% |
| !! | GTTGGAGGGTATTATGATGC+AGG | + | chr5.3:69362853-69362872 | MS.gene057880:CDS | 45.0% |
| !! | TGAGCTACTTAGTGGGCTAT+GGG | + | chr5.3:69365522-69365541 | MS.gene057880:CDS | 45.0% |
| !!! | CCTCTATGATGGACCCTTTT+AGG | - | chr5.3:69365557-69365576 | None:intergenic | 45.0% |
| !!! | GTTTTGGTTGGAGCTTTGGT+TGG | + | chr5.3:69365671-69365690 | MS.gene057880:CDS | 45.0% |
| !!! | AATAAAATGTAATTTTAAAA+AGG | + | chr5.3:69364717-69364736 | MS.gene057880:intron | 5.0% |
| !!! | ATTTTATCATATAATTATTT+TGG | + | chr5.3:69364188-69364207 | MS.gene057880:intron | 5.0% |
| !!! | TTTTATCATATAATTATTTT+GGG | + | chr5.3:69364189-69364208 | MS.gene057880:intron | 5.0% |
| AAACACTTGCCAGCTGTGTC+GGG | - | chr5.3:69364784-69364803 | None:intergenic | 50.0% | |
| CTTACAATCAACGCGTCGCT+TGG | + | chr5.3:69362688-69362707 | MS.gene057880:CDS | 50.0% | |
| GGTCCATAACAGAGTTCAGC+TGG | + | chr5.3:69363900-69363919 | MS.gene057880:CDS | 50.0% | |
| TCGATACTGACACGACACGT+TGG | + | chr5.3:69363374-69363393 | MS.gene057880:intron | 50.0% | |
| TCTCCAGCAAGATCTGAACC+AGG | - | chr5.3:69363251-69363270 | None:intergenic | 50.0% | |
| ! | AGTTACTATGCGTCGGTGAG+TGG | + | chr5.3:69363767-69363786 | MS.gene057880:CDS | 50.0% |
| ! | GTGTAGGTGGATTTGGTTGG+AGG | + | chr5.3:69362838-69362857 | MS.gene057880:intron | 50.0% |
| ! | TGCAAAGCTAAAGCACCACC+AGG | - | chr5.3:69364601-69364620 | None:intergenic | 50.0% |
| ! | TTGGTTGGAGCTTTGGTTGG+TGG | + | chr5.3:69365674-69365693 | MS.gene057880:CDS | 50.0% |
| !! | CAAGCGACGCGTTGATTGTA+AGG | - | chr5.3:69362690-69362709 | None:intergenic | 50.0% |
| !! | CTTTGGTTGGTGGTCCTGAT+TGG | + | chr5.3:69365684-69365703 | MS.gene057880:CDS | 50.0% |
| TGGAGAGACAGCAGCAGCTA+TGG | + | chr5.3:69363265-69363284 | MS.gene057880:CDS | 55.0% | |
| ! | AGTTGTTATGGGCTGCCACG+TGG | + | chr5.3:69363801-69363820 | MS.gene057880:CDS | 55.0% |
| ! | CGAGATTTTCCCGACACAGC+TGG | + | chr5.3:69364772-69364791 | MS.gene057880:intron | 55.0% |
| ! | TGCGTCGGTGAGTGGATTCA+TGG | + | chr5.3:69363775-69363794 | MS.gene057880:CDS | 55.0% |
| !! | GGCTGCCACGTGGCTTTATA+AGG | + | chr5.3:69363811-69363830 | MS.gene057880:CDS | 55.0% |
| !! | GGTGGCCTTATAAAGCCACG+TGG | - | chr5.3:69363819-69363838 | None:intergenic | 55.0% |
| ! | AGCATGCACGTGCTGCTGCC+TGG | + | chr5.3:69364580-69364599 | MS.gene057880:intron | 65.0% |
| ! | ATGCACGTGCTGCTGCCTGG+TGG | + | chr5.3:69364583-69364602 | MS.gene057880:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 69362534 | 69365823 | 69362534 | ID=MS.gene057880 |
| chr5.3 | mRNA | 69362534 | 69365823 | 69362534 | ID=MS.gene057880.t1;Parent=MS.gene057880 |
| chr5.3 | exon | 69362534 | 69362749 | 69362534 | ID=MS.gene057880.t1.exon1;Parent=MS.gene057880.t1 |
| chr5.3 | CDS | 69362534 | 69362749 | 69362534 | ID=cds.MS.gene057880.t1;Parent=MS.gene057880.t1 |
| chr5.3 | exon | 69362844 | 69363056 | 69362844 | ID=MS.gene057880.t1.exon2;Parent=MS.gene057880.t1 |
| chr5.3 | CDS | 69362844 | 69363056 | 69362844 | ID=cds.MS.gene057880.t1;Parent=MS.gene057880.t1 |
| chr5.3 | exon | 69363158 | 69363358 | 69363158 | ID=MS.gene057880.t1.exon3;Parent=MS.gene057880.t1 |
| chr5.3 | CDS | 69363158 | 69363358 | 69363158 | ID=cds.MS.gene057880.t1;Parent=MS.gene057880.t1 |
| chr5.3 | exon | 69363707 | 69363961 | 69363707 | ID=MS.gene057880.t1.exon4;Parent=MS.gene057880.t1 |
| chr5.3 | CDS | 69363707 | 69363961 | 69363707 | ID=cds.MS.gene057880.t1;Parent=MS.gene057880.t1 |
| chr5.3 | exon | 69365197 | 69365823 | 69365197 | ID=MS.gene057880.t1.exon5;Parent=MS.gene057880.t1 |
| chr5.3 | CDS | 69365197 | 69365823 | 69365197 | ID=cds.MS.gene057880.t1;Parent=MS.gene057880.t1 |
| Gene Sequence |
| Protein sequence |
