Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95919.t1 | XP_013466866.1 | 96.1 | 465 | 18 | 0 | 1 | 465 | 17 | 481 | 3.10E-266 | 927.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95919.t1 | O64890 | 63.4 | 464 | 168 | 2 | 1 | 463 | 25 | 487 | 4.9e-172 | 605.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95919.t1 | A0A072VGL9 | 96.1 | 465 | 18 | 0 | 1 | 465 | 17 | 481 | 2.2e-266 | 927.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95919.t1 | MTR_1g037340 | 96.129 | 465 | 18 | 0 | 1 | 465 | 17 | 481 | 0.0 | 936 |
MS.gene95919.t1 | MTR_8g099410 | 54.741 | 464 | 203 | 4 | 9 | 465 | 28 | 491 | 1.54e-179 | 513 |
MS.gene95919.t1 | MTR_8g099410 | 54.741 | 464 | 203 | 4 | 9 | 465 | 28 | 491 | 4.37e-178 | 513 |
MS.gene95919.t1 | MTR_4g074960 | 54.274 | 468 | 200 | 6 | 9 | 465 | 28 | 492 | 3.82e-173 | 500 |
MS.gene95919.t1 | MTR_5g085730 | 51.386 | 469 | 219 | 5 | 4 | 463 | 26 | 494 | 5.20e-173 | 496 |
MS.gene95919.t1 | MTR_3g080190 | 51.724 | 464 | 215 | 6 | 9 | 463 | 40 | 503 | 1.76e-170 | 490 |
MS.gene95919.t1 | MTR_5g093590 | 51.392 | 467 | 217 | 6 | 9 | 465 | 34 | 500 | 1.66e-165 | 476 |
MS.gene95919.t1 | MTR_3g080810 | 48.504 | 468 | 221 | 9 | 9 | 465 | 35 | 493 | 1.17e-146 | 428 |
MS.gene95919.t1 | MTR_8g104820 | 48.723 | 470 | 225 | 8 | 6 | 465 | 27 | 490 | 9.68e-144 | 421 |
MS.gene95919.t1 | MTR_5g009970 | 47.084 | 463 | 229 | 7 | 9 | 465 | 41 | 493 | 5.33e-142 | 416 |
MS.gene95919.t1 | MTR_5g010000 | 47.826 | 460 | 230 | 5 | 9 | 465 | 40 | 492 | 9.16e-142 | 416 |
MS.gene95919.t1 | MTR_4g035930 | 46.482 | 469 | 239 | 7 | 1 | 465 | 7 | 467 | 1.04e-141 | 414 |
MS.gene95919.t1 | MTR_3g117500 | 47.780 | 473 | 231 | 10 | 3 | 465 | 18 | 484 | 5.70e-141 | 413 |
MS.gene95919.t1 | MTR_3g010330 | 48.195 | 471 | 228 | 9 | 3 | 465 | 18 | 480 | 5.35e-139 | 408 |
MS.gene95919.t1 | MTR_4g035955 | 46.908 | 469 | 236 | 8 | 1 | 465 | 7 | 466 | 2.70e-138 | 406 |
MS.gene95919.t1 | MTR_3g105230 | 44.843 | 446 | 235 | 7 | 9 | 452 | 30 | 466 | 8.43e-131 | 387 |
MS.gene95919.t1 | MTR_1g088190 | 46.596 | 470 | 218 | 9 | 4 | 465 | 34 | 478 | 3.19e-129 | 383 |
MS.gene95919.t1 | MTR_4g035975 | 45.223 | 471 | 236 | 9 | 9 | 465 | 27 | 489 | 7.57e-128 | 380 |
MS.gene95919.t1 | MTR_3g023740 | 44.662 | 459 | 243 | 7 | 9 | 465 | 30 | 479 | 3.26e-124 | 370 |
MS.gene95919.t1 | MTR_3g113720 | 43.710 | 469 | 243 | 10 | 10 | 465 | 58 | 518 | 1.59e-123 | 370 |
MS.gene95919.t1 | MTR_5g009970 | 45.368 | 421 | 214 | 7 | 51 | 465 | 9 | 419 | 6.25e-121 | 360 |
MS.gene95919.t1 | MTR_8g075990 | 42.827 | 467 | 250 | 8 | 10 | 465 | 64 | 524 | 4.20e-115 | 348 |
MS.gene95919.t1 | MTR_5g009970 | 44.030 | 402 | 209 | 7 | 70 | 465 | 1 | 392 | 6.81e-109 | 328 |
MS.gene95919.t1 | MTR_2g028480 | 40.650 | 492 | 244 | 14 | 9 | 465 | 111 | 589 | 4.04e-90 | 287 |
MS.gene95919.t1 | MTR_3g090540 | 36.492 | 496 | 269 | 16 | 3 | 465 | 101 | 583 | 9.08e-86 | 275 |
MS.gene95919.t1 | MTR_3g082440 | 38.193 | 487 | 260 | 16 | 9 | 465 | 116 | 591 | 8.24e-83 | 268 |
MS.gene95919.t1 | MTR_5g009970 | 45.509 | 334 | 166 | 7 | 138 | 465 | 1 | 324 | 1.34e-81 | 256 |
MS.gene95919.t1 | MTR_1g037320 | 79.375 | 160 | 33 | 0 | 70 | 229 | 1 | 160 | 8.16e-79 | 247 |
MS.gene95919.t1 | MTR_1g037320 | 78.226 | 124 | 27 | 0 | 340 | 463 | 166 | 289 | 1.20e-65 | 213 |
MS.gene95919.t1 | MTR_1g088190 | 46.178 | 314 | 138 | 7 | 4 | 310 | 34 | 323 | 3.87e-73 | 234 |
MS.gene95919.t1 | MTR_4g047570 | 70.796 | 113 | 13 | 2 | 252 | 363 | 1 | 94 | 4.53e-43 | 147 |
MS.gene95919.t1 | MTR_7g108925 | 44.643 | 168 | 90 | 3 | 301 | 466 | 33 | 199 | 2.31e-42 | 150 |
MS.gene95919.t1 | MTR_0393s0050 | 47.101 | 138 | 71 | 2 | 310 | 445 | 19 | 156 | 4.11e-36 | 132 |
MS.gene95919.t1 | MTR_4g128810 | 30.364 | 247 | 140 | 7 | 221 | 465 | 117 | 333 | 2.52e-21 | 95.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95919.t1 | AT2G44570 | 64.348 | 460 | 162 | 2 | 6 | 463 | 30 | 489 | 0.0 | 598 |
MS.gene95919.t1 | AT2G44550 | 63.090 | 466 | 170 | 2 | 1 | 465 | 25 | 489 | 0.0 | 589 |
MS.gene95919.t1 | AT2G44540 | 62.069 | 464 | 175 | 1 | 1 | 463 | 25 | 488 | 0.0 | 583 |
MS.gene95919.t1 | AT2G44560 | 62.716 | 464 | 172 | 1 | 1 | 463 | 25 | 488 | 0.0 | 571 |
MS.gene95919.t1 | AT1G64390 | 55.603 | 464 | 199 | 4 | 9 | 465 | 25 | 488 | 0.0 | 523 |
MS.gene95919.t1 | AT4G11050 | 54.701 | 468 | 205 | 4 | 5 | 465 | 22 | 489 | 1.08e-179 | 514 |
MS.gene95919.t1 | AT4G11050 | 54.701 | 468 | 205 | 4 | 5 | 465 | 22 | 489 | 3.75e-179 | 516 |
MS.gene95919.t1 | AT4G11050 | 54.701 | 468 | 205 | 4 | 5 | 465 | 22 | 489 | 4.27e-179 | 515 |
MS.gene95919.t1 | AT2G32990 | 51.483 | 472 | 214 | 6 | 4 | 463 | 34 | 502 | 1.90e-169 | 487 |
MS.gene95919.t1 | AT2G44570 | 60.963 | 374 | 145 | 1 | 6 | 378 | 30 | 403 | 1.71e-159 | 457 |
MS.gene95919.t1 | AT1G48930 | 51.282 | 468 | 209 | 6 | 9 | 463 | 30 | 491 | 7.59e-154 | 451 |
MS.gene95919.t1 | AT1G02800 | 50.746 | 469 | 218 | 7 | 3 | 465 | 37 | 498 | 1.55e-153 | 446 |
MS.gene95919.t1 | AT1G23210 | 50.107 | 467 | 220 | 7 | 6 | 465 | 25 | 485 | 5.26e-150 | 436 |
MS.gene95919.t1 | AT1G70710 | 49.679 | 467 | 222 | 7 | 6 | 465 | 25 | 485 | 9.47e-146 | 426 |
MS.gene95919.t1 | AT4G02290 | 48.932 | 468 | 226 | 7 | 5 | 465 | 48 | 509 | 7.53e-144 | 422 |
MS.gene95919.t1 | AT4G23560 | 47.966 | 467 | 232 | 6 | 2 | 465 | 16 | 474 | 1.89e-139 | 409 |
MS.gene95919.t1 | AT1G71380 | 48.291 | 468 | 224 | 9 | 6 | 465 | 21 | 478 | 8.46e-139 | 407 |
MS.gene95919.t1 | AT4G09740 | 47.537 | 467 | 234 | 6 | 2 | 465 | 16 | 474 | 5.98e-137 | 403 |
MS.gene95919.t1 | AT4G39010 | 47.234 | 470 | 227 | 11 | 9 | 465 | 29 | 490 | 1.70e-136 | 402 |
MS.gene95919.t1 | AT3G43860 | 46.921 | 471 | 234 | 8 | 2 | 465 | 22 | 483 | 2.64e-135 | 399 |
MS.gene95919.t1 | AT3G43860 | 46.921 | 471 | 234 | 8 | 2 | 465 | 22 | 483 | 2.64e-135 | 399 |
MS.gene95919.t1 | AT1G22880 | 47.122 | 469 | 230 | 9 | 6 | 466 | 21 | 479 | 4.64e-135 | 398 |
MS.gene95919.t1 | AT1G19940 | 46.957 | 460 | 229 | 9 | 9 | 460 | 48 | 500 | 6.58e-132 | 391 |
MS.gene95919.t1 | AT1G19940 | 46.957 | 460 | 229 | 9 | 9 | 460 | 48 | 500 | 6.58e-132 | 391 |
MS.gene95919.t1 | AT4G39000 | 46.269 | 469 | 233 | 12 | 9 | 465 | 25 | 486 | 3.63e-121 | 363 |
MS.gene95919.t1 | AT4G38990 | 45.833 | 480 | 224 | 15 | 9 | 465 | 23 | 489 | 8.01e-120 | 359 |
MS.gene95919.t1 | AT1G75680 | 45.111 | 450 | 234 | 8 | 10 | 452 | 58 | 501 | 8.89e-120 | 360 |
MS.gene95919.t1 | AT4G02290 | 45.792 | 404 | 206 | 7 | 70 | 466 | 1 | 398 | 1.32e-109 | 330 |
MS.gene95919.t1 | AT1G22880 | 44.938 | 405 | 205 | 9 | 70 | 466 | 1 | 395 | 6.78e-108 | 326 |
MS.gene95919.t1 | AT4G39010 | 45.082 | 366 | 182 | 9 | 9 | 362 | 29 | 387 | 1.24e-98 | 301 |
MS.gene95919.t1 | AT1G19940 | 45.856 | 362 | 187 | 6 | 9 | 363 | 48 | 407 | 8.51e-97 | 298 |
MS.gene95919.t1 | AT5G49720 | 39.104 | 491 | 253 | 16 | 9 | 465 | 108 | 586 | 1.28e-83 | 270 |
MS.gene95919.t1 | AT4G24260 | 39.228 | 492 | 251 | 16 | 9 | 465 | 108 | 586 | 6.32e-82 | 265 |
MS.gene95919.t1 | AT1G65610 | 37.705 | 488 | 260 | 16 | 9 | 465 | 116 | 590 | 3.17e-81 | 263 |
MS.gene95919.t1 | AT1G22880 | 48.397 | 312 | 146 | 6 | 6 | 311 | 21 | 323 | 4.40e-81 | 254 |
MS.gene95919.t1 | AT4G38990 | 44.789 | 355 | 161 | 10 | 1 | 347 | 15 | 342 | 4.64e-80 | 252 |
MS.gene95919.t1 | AT4G24260 | 38.843 | 363 | 181 | 13 | 9 | 338 | 108 | 462 | 4.21e-49 | 175 |
MS.gene95919.t1 | AT4G24260 | 42.215 | 289 | 137 | 9 | 9 | 271 | 108 | 392 | 8.05e-48 | 171 |
Find 95 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGTGGAGTCTTCTGGTATT+TGG | 0.150871 | 1.3:-21061489 | MS.gene95919:CDS |
ATTGCTCCATCCAATGTATT+AGG | 0.167009 | 1.3:+21060663 | None:intergenic |
ATGCATTAGCAGCCATAAAA+TGG | 0.203841 | 1.3:-21062746 | MS.gene95919:CDS |
TGCTGAAACTGCTGCTGCTT+TGG | 0.209306 | 1.3:-21062562 | MS.gene95919:CDS |
ACCATATAACTCATTTGTTT+TGG | 0.252912 | 1.3:+21060816 | None:intergenic |
CTGTAGTTGGCTCTCCTAAT+TGG | 0.258505 | 1.3:+21060592 | None:intergenic |
TTTATAGGTGGACTACATAT+TGG | 0.265602 | 1.3:-21060847 | MS.gene95919:intron |
AAACACCAGGAGGTTTATTA+TGG | 0.277082 | 1.3:-21061396 | MS.gene95919:CDS |
AATAGGAATGATTTCCAATT+AGG | 0.285802 | 1.3:-21060606 | MS.gene95919:CDS |
AGTGGAGTCTTCTGGTATTT+GGG | 0.295567 | 1.3:-21061488 | MS.gene95919:CDS |
TGTTGCATGAACTAGCATTT+TGG | 0.307097 | 1.3:+21062494 | None:intergenic |
GTTGGTGTTCTTGCTTATCT+AGG | 0.309346 | 1.3:-21060552 | MS.gene95919:CDS |
CAACACCTAGGAATTCTTAT+AGG | 0.310428 | 1.3:-21062617 | MS.gene95919:CDS |
GATGGGGCAGTGGAGTCTTC+TGG | 0.317246 | 1.3:-21061496 | MS.gene95919:CDS |
TCCAAAACAAATGAGTTATA+TGG | 0.317497 | 1.3:-21060817 | MS.gene95919:CDS |
TTGCTCCATCCAATGTATTA+GGG | 0.330211 | 1.3:+21060664 | None:intergenic |
GCTGGAGACAATTTGAAGTT+AGG | 0.333569 | 1.3:-21062855 | MS.gene95919:CDS |
ATATTCCAGCAGCGGATATA+AGG | 0.337575 | 1.3:-21062131 | MS.gene95919:intron |
ACAAACAGGATGAATTACTA+TGG | 0.338358 | 1.3:-21061778 | MS.gene95919:intron |
CCATCCAATGTATTAGGGTT+TGG | 0.362477 | 1.3:+21060669 | None:intergenic |
ATTTCTCCATACAAAACATT+TGG | 0.377809 | 1.3:+21062690 | None:intergenic |
AATGTTGCTTGTGCTGATTA+TGG | 0.385786 | 1.3:-21063483 | MS.gene95919:CDS |
TTATAGGTGGACTACATATT+GGG | 0.392100 | 1.3:-21060846 | MS.gene95919:intron |
CTTAAAGATGGCCAAGATGC+TGG | 0.392573 | 1.3:-21063366 | MS.gene95919:CDS |
TGCATTAGCAGCCATAAAAT+GGG | 0.401006 | 1.3:-21062745 | MS.gene95919:CDS |
GTGCAAGAACAATGTTTAGT+TGG | 0.403821 | 1.3:-21061679 | MS.gene95919:CDS |
AGTTGGGATGACAAGTATCT+TGG | 0.409837 | 1.3:-21061662 | MS.gene95919:CDS |
GTTTCTGTTGCACCTTTAGT+TGG | 0.414736 | 1.3:-21060570 | MS.gene95919:CDS |
GTTTATTATGGTTTCAGCCA+TGG | 0.441523 | 1.3:-21061384 | MS.gene95919:CDS |
TGCAAGAACAATGTTTAGTT+GGG | 0.447959 | 1.3:-21061678 | MS.gene95919:CDS |
TTTATTATGGTTTCAGCCAT+GGG | 0.452364 | 1.3:-21061383 | MS.gene95919:CDS |
CTCCATGTTACTCTCTGGTT+AGG | 0.455018 | 1.3:+21063402 | None:intergenic |
CCCCTCTCCATGTTACTCTC+TGG | 0.456953 | 1.3:+21063397 | None:intergenic |
TCTTGCACCTCCATTGTCGC+TGG | 0.462904 | 1.3:+21061694 | None:intergenic |
CACATCTCTTGTTCAAGCTC+AGG | 0.464765 | 1.3:-21061245 | MS.gene95919:intron |
CAACACCACTACTACATTGA+AGG | 0.467522 | 1.3:+21061284 | None:intergenic |
TGCACCAAACCCTAATACAT+TGG | 0.468229 | 1.3:-21060673 | MS.gene95919:CDS |
AGTAATTTACCCCAGCATCT+TGG | 0.479746 | 1.3:+21063355 | None:intergenic |
AAGCCATCTTTGCATCCTAC+TGG | 0.488731 | 1.3:+21060717 | None:intergenic |
TTACAACAACAATGCTATCA+TGG | 0.493153 | 1.3:-21062818 | MS.gene95919:CDS |
CAACATTGATGATCTGAGTC+AGG | 0.495400 | 1.3:+21062660 | None:intergenic |
ATGAGTTATATGGTGGGGTA+TGG | 0.498004 | 1.3:-21060807 | MS.gene95919:CDS |
AAATACCTCGATTACCTTGG+AGG | 0.498433 | 1.3:-21061719 | MS.gene95919:CDS |
CTAGGTGTTGACATATCCTC+TGG | 0.498608 | 1.3:+21062630 | None:intergenic |
TTAAAGATGGCCAAGATGCT+GGG | 0.499862 | 1.3:-21063365 | MS.gene95919:CDS |
GTTGGAGGATATTATGATGC+TGG | 0.501561 | 1.3:-21062873 | MS.gene95919:CDS |
ACAAGAGATGTGAGATCAGA+AGG | 0.503193 | 1.3:+21061256 | None:intergenic |
TGCACAAATTCTTGCTGCAA+AGG | 0.510148 | 1.3:-21061639 | MS.gene95919:intron |
CCAAACCCTAATACATTGGA+TGG | 0.511682 | 1.3:-21060669 | MS.gene95919:CDS |
CATGTTACTCTCTGGTTAGG+AGG | 0.516741 | 1.3:+21063405 | None:intergenic |
ATTGTTGTTGTAAATGCCAT+TGG | 0.519034 | 1.3:+21062828 | None:intergenic |
CTGCTGGTGGGATACTATTG+TGG | 0.519945 | 1.3:+21062161 | None:intergenic |
AGACAAATATTGAGAATAAG+TGG | 0.523131 | 1.3:+21061321 | None:intergenic |
CTTGGAGGAGCCAGCGACAA+TGG | 0.525639 | 1.3:-21061704 | MS.gene95919:CDS |
AGGATTGATGAACAACATCC+TGG | 0.527890 | 1.3:-21062597 | MS.gene95919:CDS |
GATCACCTTATATCCGCTGC+TGG | 0.531376 | 1.3:+21062126 | None:intergenic |
TCAATCCTATAAGAATTCCT+AGG | 0.537494 | 1.3:+21062612 | None:intergenic |
CATCATAATATCCTCCAACT+AGG | 0.538036 | 1.3:+21062877 | None:intergenic |
CATGTGCAGATTGACCTAGT+TGG | 0.539382 | 1.3:-21062891 | MS.gene95919:intron |
CCTCTATGATGAATTTGTTG+TGG | 0.545265 | 1.3:+21060774 | None:intergenic |
AAAACAAATGAGTTATATGG+TGG | 0.550740 | 1.3:-21060814 | MS.gene95919:CDS |
AACACCACTACTACATTGAA+GGG | 0.556342 | 1.3:+21061285 | None:intergenic |
TCAGCAGCAAGATCAGAGCC+AGG | 0.559234 | 1.3:+21062579 | None:intergenic |
GGGGATTCTGCACTTAAAGA+TGG | 0.560127 | 1.3:-21063378 | MS.gene95919:CDS |
GTGCACAGATTGAAAAGCAA+TGG | 0.563776 | 1.3:+21062530 | None:intergenic |
CATTGTCGCTGGCTCCTCCA+AGG | 0.566153 | 1.3:+21061705 | None:intergenic |
TCACCAGTAGGATGCAAAGA+TGG | 0.567788 | 1.3:-21060720 | MS.gene95919:CDS |
CTGACTCAGATCATCAATGT+TGG | 0.570776 | 1.3:-21062659 | MS.gene95919:CDS |
TAAGCAAGAACACCAACTAA+AGG | 0.577826 | 1.3:+21060558 | None:intergenic |
AACAAATGAGTTATATGGTG+GGG | 0.577963 | 1.3:-21060812 | MS.gene95919:CDS |
ACCAGAGAGTAACATGGAGA+GGG | 0.579071 | 1.3:-21063398 | MS.gene95919:CDS |
GGTGCAACAGAAACTGTAGT+TGG | 0.581151 | 1.3:+21060579 | None:intergenic |
GTGCAGATTGACCTAGTTGG+AGG | 0.584135 | 1.3:-21062888 | MS.gene95919:intron |
ATAGAGTTCAAAGACCAACT+TGG | 0.584442 | 1.3:-21062789 | MS.gene95919:CDS |
CCACAACAAATTCATCATAG+AGG | 0.584665 | 1.3:-21060774 | MS.gene95919:CDS |
CAAACAGGATGAATTACTAT+GGG | 0.588140 | 1.3:-21061777 | MS.gene95919:intron |
AAACAAATGAGTTATATGGT+GGG | 0.588315 | 1.3:-21060813 | MS.gene95919:CDS |
AATTACTATGGGCAGCAGCA+TGG | 0.593166 | 1.3:-21061766 | MS.gene95919:CDS |
TGAAACCATAATAAACCTCC+TGG | 0.600056 | 1.3:+21061391 | None:intergenic |
ACATATTGATTATTACCCCA+TGG | 0.605665 | 1.3:+21061367 | None:intergenic |
GCTTCCCTTCAATGTAGTAG+TGG | 0.617577 | 1.3:-21061289 | MS.gene95919:CDS |
AACCAGAGAGTAACATGGAG+AGG | 0.618242 | 1.3:-21063399 | MS.gene95919:CDS |
CAAGAGATGTGAGATCAGAA+GGG | 0.623937 | 1.3:+21061257 | None:intergenic |
CAAAACTTTCAGAAAACACC+AGG | 0.624764 | 1.3:-21061409 | MS.gene95919:CDS |
TAAAGATGGCCAAGATGCTG+GGG | 0.633585 | 1.3:-21063364 | MS.gene95919:intron |
AAACAAGATAGTTCACCAGT+AGG | 0.633694 | 1.3:-21060732 | MS.gene95919:CDS |
GGAGGAGCCAGCGACAATGG+AGG | 0.636803 | 1.3:-21061701 | MS.gene95919:CDS |
TGGCTCCTCCAAGGTAATCG+AGG | 0.662076 | 1.3:+21061714 | None:intergenic |
AACTTTCAGAAAACACCAGG+AGG | 0.662576 | 1.3:-21061406 | MS.gene95919:CDS |
CTCCTAACCAGAGAGTAACA+TGG | 0.672461 | 1.3:-21063404 | MS.gene95919:CDS |
GCATTAGCAGCCATAAAATG+GGG | 0.674675 | 1.3:-21062744 | MS.gene95919:CDS |
CAGAGGATATGTCAACACCT+AGG | 0.678701 | 1.3:-21062629 | MS.gene95919:CDS |
TCAATGTTGGCAAAGACCAG+AGG | 0.679190 | 1.3:-21062646 | MS.gene95919:CDS |
CCAGAGAGTAACATGGAGAG+GGG | 0.683701 | 1.3:-21063397 | MS.gene95919:CDS |
TTATTATGGTTTCAGCCATG+GGG | 0.690621 | 1.3:-21061382 | MS.gene95919:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATTATTATTTTTTTTTGTT+TGG | - | chr1.3:21061794-21061813 | MS.gene95919:intron | 10.0% |
!! | AATAAATTTCAAATTCCATA+AGG | + | chr1.3:21062239-21062258 | None:intergenic | 15.0% |
!! | ATTTGAATAAAATGTTTCTT+AGG | + | chr1.3:21061117-21061136 | None:intergenic | 15.0% |
!! | GAAAGGAAAAAAAATATTTA+AGG | - | chr1.3:21062156-21062175 | MS.gene95919:CDS | 15.0% |
!! | TTTGAATAAAATGTTTCTTA+GGG | + | chr1.3:21061116-21061135 | None:intergenic | 15.0% |
!!! | AAAAAGTTTGTTATTTTTTG+AGG | - | chr1.3:21060592-21060611 | MS.gene95919:CDS | 15.0% |
!!! | AAAAGTTTGTTATTTTTTGA+GGG | - | chr1.3:21060593-21060612 | MS.gene95919:CDS | 15.0% |
!!! | AAACATTATATTAGTGTTTT+AGG | + | chr1.3:21062193-21062212 | None:intergenic | 15.0% |
!!! | ATATTTTTTATTACTTTTGG+TGG | - | chr1.3:21060933-21060952 | MS.gene95919:intron | 15.0% |
!!! | TATAAATAGAAATTTTGTCT+TGG | - | chr1.3:21062909-21062928 | MS.gene95919:intron | 15.0% |
!! | AACTTGAAAATAGATTATGA+TGG | + | chr1.3:21062830-21062849 | None:intergenic | 20.0% |
!! | ATAGAAATATAGAAGTTCAA+AGG | + | chr1.3:21061948-21061967 | None:intergenic | 20.0% |
!! | TGAAATTTATTTGTACAAAC+AGG | - | chr1.3:21062248-21062267 | MS.gene95919:intron | 20.0% |
!! | TTCATGTGTTTAATGTTTAT+AGG | - | chr1.3:21063178-21063197 | MS.gene95919:intron | 20.0% |
!!! | AAACGATATTCATTTTGAAA+TGG | - | chr1.3:21063130-21063149 | MS.gene95919:intron | 20.0% |
!!! | AGATCAAAATGATGATTTTA+CGG | - | chr1.3:21063409-21063428 | MS.gene95919:CDS | 20.0% |
!!! | ATTTTCAATATAGATGAAAG+AGG | + | chr1.3:21062448-21062467 | None:intergenic | 20.0% |
!!! | GAAAATTCAAAGGTATAAAA+AGG | + | chr1.3:21060724-21060743 | None:intergenic | 20.0% |
!!! | TTCTAACCTCATTAATTTTA+AGG | + | chr1.3:21063039-21063058 | None:intergenic | 20.0% |
!!! | TTTTTCAAGATGAATAAGTA+GGG | + | chr1.3:21061717-21061736 | None:intergenic | 20.0% |
! | AAAACAAATGAGTTATATGG+TGG | - | chr1.3:21063226-21063245 | MS.gene95919:intron | 25.0% |
! | AAACAAATGAGTTATATGGT+GGG | - | chr1.3:21063227-21063246 | MS.gene95919:intron | 25.0% |
! | AATAGGAATGATTTCCAATT+AGG | - | chr1.3:21063434-21063453 | MS.gene95919:CDS | 25.0% |
! | AGACAAATATTGAGAATAAG+TGG | + | chr1.3:21062722-21062741 | None:intergenic | 25.0% |
! | ATGTGTTTAATGTTTATAGG+TGG | - | chr1.3:21063181-21063200 | MS.gene95919:intron | 25.0% |
! | ATTTCTCCATACAAAACATT+TGG | + | chr1.3:21061353-21061372 | None:intergenic | 25.0% |
! | CACTTTCCTTAAAATTAATG+AGG | - | chr1.3:21063030-21063049 | MS.gene95919:intron | 25.0% |
! | CTACTTATTCATCTTGAAAA+AGG | - | chr1.3:21061716-21061735 | MS.gene95919:CDS | 25.0% |
! | TCCAAAACAAATGAGTTATA+TGG | - | chr1.3:21063223-21063242 | MS.gene95919:intron | 25.0% |
! | TGAAATGAAGGAAAATTCAA+AGG | + | chr1.3:21060734-21060753 | None:intergenic | 25.0% |
!! | AATGTTTTGTATGGAGAAAT+TGG | - | chr1.3:21061353-21061372 | MS.gene95919:CDS | 25.0% |
!! | ACCATATAACTCATTTGTTT+TGG | + | chr1.3:21063227-21063246 | None:intergenic | 25.0% |
!! | AGTTTTACCATTTAAGCTTA+AGG | - | chr1.3:21062846-21062865 | MS.gene95919:CDS | 25.0% |
!! | ATGATGATTTTACGGATAAT+AGG | - | chr1.3:21063417-21063436 | MS.gene95919:CDS | 25.0% |
!! | GATTTTGCAAACAATAATCA+AGG | - | chr1.3:21061850-21061869 | MS.gene95919:intron | 25.0% |
!!! | ATTTTGATTGATGTTTGTCA+TGG | - | chr1.3:21062017-21062036 | MS.gene95919:intron | 25.0% |
!!! | CTATTAGTCTTTGAATCATT+AGG | + | chr1.3:21062082-21062101 | None:intergenic | 25.0% |
!!! | CTTTTTCAAGATGAATAAGT+AGG | + | chr1.3:21061718-21061737 | None:intergenic | 25.0% |
!!! | GTAAAATCATCATTTTGATC+TGG | + | chr1.3:21063410-21063429 | None:intergenic | 25.0% |
!!! | TAATGTAGCTTGTTTTAGAT+GGG | - | chr1.3:21062527-21062546 | MS.gene95919:CDS | 25.0% |
!!! | TTAATGTAGCTTGTTTTAGA+TGG | - | chr1.3:21062526-21062545 | MS.gene95919:CDS | 25.0% |
!!! | TTTTCAAGATGAATAAGTAG+GGG | + | chr1.3:21061716-21061735 | None:intergenic | 25.0% |
AAAAAATACCTCGATTACCT+TGG | - | chr1.3:21062318-21062337 | MS.gene95919:intron | 30.0% | |
AACAAATGAGTTATATGGTG+GGG | - | chr1.3:21063228-21063247 | MS.gene95919:intron | 30.0% | |
ACAAACAGGATGAATTACTA+TGG | - | chr1.3:21062262-21062281 | MS.gene95919:intron | 30.0% | |
ACAAACATTATTATGTGCAG+GGG | - | chr1.3:21061669-21061688 | MS.gene95919:CDS | 30.0% | |
AGAAACCTGATACATGATAA+AGG | + | chr1.3:21060796-21060815 | None:intergenic | 30.0% | |
AGACAAACATTATTATGTGC+AGG | - | chr1.3:21061667-21061686 | MS.gene95919:CDS | 30.0% | |
ATAACTATTGTGAGTTCGAA+AGG | - | chr1.3:21062139-21062158 | MS.gene95919:CDS | 30.0% | |
ATGAACCTTTATCATGTATC+AGG | - | chr1.3:21060788-21060807 | MS.gene95919:CDS | 30.0% | |
CAAACAGGATGAATTACTAT+GGG | - | chr1.3:21062263-21062282 | MS.gene95919:intron | 30.0% | |
CAAACTAAAACATAGAGCTT+TGG | - | chr1.3:21060879-21060898 | MS.gene95919:intron | 30.0% | |
GACAAACATTATTATGTGCA+GGG | - | chr1.3:21061668-21061687 | MS.gene95919:CDS | 30.0% | |
TCAATCCTATAAGAATTCCT+AGG | + | chr1.3:21061431-21061450 | None:intergenic | 30.0% | |
TGCAAGAACAATGTTTAGTT+GGG | - | chr1.3:21062362-21062381 | MS.gene95919:intron | 30.0% | |
TTACAACAACAATGCTATCA+TGG | - | chr1.3:21061222-21061241 | MS.gene95919:intron | 30.0% | |
TTTATTATGGTTTCAGCCAT+GGG | - | chr1.3:21062657-21062676 | MS.gene95919:CDS | 30.0% | |
TTTGTCATGGTTAGAATGAT+CGG | - | chr1.3:21062030-21062049 | MS.gene95919:intron | 30.0% | |
! | ACATATTGATTATTACCCCA+TGG | + | chr1.3:21062676-21062695 | None:intergenic | 30.0% |
! | ATTGTTGTTGTAAATGCCAT+TGG | + | chr1.3:21061215-21061234 | None:intergenic | 30.0% |
! | CAACAACCAAATGTTTTGTA+TGG | - | chr1.3:21061344-21061363 | MS.gene95919:CDS | 30.0% |
! | GCATTTTCGTTATGAAATGA+AGG | + | chr1.3:21060746-21060765 | None:intergenic | 30.0% |
! | TTAGTCTTTGAATCATTAGG+AGG | + | chr1.3:21062079-21062098 | None:intergenic | 30.0% |
!! | AAAACATAGAGCTTTGGTTT+TGG | - | chr1.3:21060885-21060904 | MS.gene95919:intron | 30.0% |
!! | TGGTGTTTTCTGAAAGTTTT+GGG | + | chr1.3:21062632-21062651 | None:intergenic | 30.0% |
!! | TTATAGGTGGACTACATATT+GGG | - | chr1.3:21063194-21063213 | MS.gene95919:intron | 30.0% |
!! | TTTATAGGTGGACTACATAT+TGG | - | chr1.3:21063193-21063212 | MS.gene95919:intron | 30.0% |
!! | TTTGAAGTTAGGTTTTCCAA+TGG | - | chr1.3:21061196-21061215 | MS.gene95919:intron | 30.0% |
!!! | AATGTAGCTTGTTTTAGATG+GGG | - | chr1.3:21062528-21062547 | MS.gene95919:CDS | 30.0% |
!!! | ATTTTTTCAAGTTTGTAGCG+CGG | + | chr1.3:21062305-21062324 | None:intergenic | 30.0% |
AAACAAGATAGTTCACCAGT+AGG | - | chr1.3:21063308-21063327 | MS.gene95919:intron | 35.0% | |
AAACACCAGGAGGTTTATTA+TGG | - | chr1.3:21062644-21062663 | MS.gene95919:CDS | 35.0% | |
AACACCACTACTACATTGAA+GGG | + | chr1.3:21062758-21062777 | None:intergenic | 35.0% | |
AGACTAATAGAGATACCTTG+AGG | - | chr1.3:21062092-21062111 | MS.gene95919:intron | 35.0% | |
AGCATGACCTTAAGCTTAAA+TGG | + | chr1.3:21062856-21062875 | None:intergenic | 35.0% | |
ATAACCTAGACGAACAAAGA+CGG | + | chr1.3:21061068-21061087 | None:intergenic | 35.0% | |
ATAACGAAAATGCAGAAGAC+TGG | - | chr1.3:21060753-21060772 | MS.gene95919:CDS | 35.0% | |
ATACCTTGAGGAACATATTG+AGG | - | chr1.3:21062104-21062123 | MS.gene95919:intron | 35.0% | |
ATAGAGTTCAAAGACCAACT+TGG | - | chr1.3:21061251-21061270 | MS.gene95919:CDS | 35.0% | |
ATATAATCTCATACAGCCCT+AGG | + | chr1.3:21060824-21060843 | None:intergenic | 35.0% | |
ATCAGGTTTCTAAGTTCCTA+GGG | - | chr1.3:21060805-21060824 | MS.gene95919:CDS | 35.0% | |
ATGCATTAGCAGCCATAAAA+TGG | - | chr1.3:21061294-21061313 | MS.gene95919:CDS | 35.0% | |
ATTGCTCCATCCAATGTATT+AGG | + | chr1.3:21063380-21063399 | None:intergenic | 35.0% | |
CAAAACTTTCAGAAAACACC+AGG | - | chr1.3:21062631-21062650 | MS.gene95919:CDS | 35.0% | |
CAAATTCCATAAGGCTCAAA+TGG | + | chr1.3:21062230-21062249 | None:intergenic | 35.0% | |
CAACACCTAGGAATTCTTAT+AGG | - | chr1.3:21061423-21061442 | MS.gene95919:CDS | 35.0% | |
CATCATAATATCCTCCAACT+AGG | + | chr1.3:21061166-21061185 | None:intergenic | 35.0% | |
CCACAACAAATTCATCATAG+AGG | - | chr1.3:21063266-21063285 | MS.gene95919:intron | 35.0% | |
GAAAAAGACGCACTGTATAT+AGG | + | chr1.3:21061026-21061045 | None:intergenic | 35.0% | |
GTGCAAGAACAATGTTTAGT+TGG | - | chr1.3:21062361-21062380 | MS.gene95919:intron | 35.0% | |
GTTTATTATGGTTTCAGCCA+TGG | - | chr1.3:21062656-21062675 | MS.gene95919:CDS | 35.0% | |
TAAGCAAGAACACCAACTAA+AGG | + | chr1.3:21063485-21063504 | None:intergenic | 35.0% | |
TACCTTGAGGAACATATTGA+GGG | - | chr1.3:21062105-21062124 | MS.gene95919:intron | 35.0% | |
TAGTTCATGCAACACAAGTA+TGG | - | chr1.3:21061555-21061574 | MS.gene95919:intron | 35.0% | |
TATCAGGTTTCTAAGTTCCT+AGG | - | chr1.3:21060804-21060823 | MS.gene95919:CDS | 35.0% | |
TGAAACCATAATAAACCTCC+TGG | + | chr1.3:21062652-21062671 | None:intergenic | 35.0% | |
TGCATTAGCAGCCATAAAAT+GGG | - | chr1.3:21061295-21061314 | MS.gene95919:CDS | 35.0% | |
TTATTATGGTTTCAGCCATG+GGG | - | chr1.3:21062658-21062677 | MS.gene95919:CDS | 35.0% | |
TTGCTCCATCCAATGTATTA+GGG | + | chr1.3:21063379-21063398 | None:intergenic | 35.0% | |
! | AGTTTTTCTGCCTTATAGCT+AGG | - | chr1.3:21063082-21063101 | MS.gene95919:intron | 35.0% |
! | GTTTTTCTGCCTTATAGCTA+GGG | - | chr1.3:21063083-21063102 | MS.gene95919:intron | 35.0% |
! | TGTTGCATGAACTAGCATTT+TGG | + | chr1.3:21061549-21061568 | None:intergenic | 35.0% |
!! | AATATGTTTTTGCTGCTGGT+GGG | + | chr1.3:21061894-21061913 | None:intergenic | 35.0% |
!! | AATGTTGCTTGTGCTGATTA+TGG | - | chr1.3:21060557-21060576 | MS.gene95919:CDS | 35.0% |
!! | CCTCTATGATGAATTTGTTG+TGG | + | chr1.3:21063269-21063288 | None:intergenic | 35.0% |
!! | CTGGTGTTTTCTGAAAGTTT+TGG | + | chr1.3:21062633-21062652 | None:intergenic | 35.0% |
!! | GCAAAGATGGCTTTGAAAAA+TGG | - | chr1.3:21063333-21063352 | MS.gene95919:intron | 35.0% |
!! | TTTTTAGTCAAGTAGCCTAG+TGG | + | chr1.3:21061752-21061771 | None:intergenic | 35.0% |
!!! | GCTCATTCTTTTTTCCAAGT+TGG | + | chr1.3:21061268-21061287 | None:intergenic | 35.0% |
AAAGACGCACTGTATATAGG+CGG | + | chr1.3:21061023-21061042 | None:intergenic | 40.0% | |
AAAGGTGAATTCTAGCCACT+AGG | - | chr1.3:21061734-21061753 | MS.gene95919:CDS | 40.0% | |
AAATACCTCGATTACCTTGG+AGG | - | chr1.3:21062321-21062340 | MS.gene95919:intron | 40.0% | |
AACCCTCAATATGTTCCTCA+AGG | + | chr1.3:21062110-21062129 | None:intergenic | 40.0% | |
AACTTTCAGAAAACACCAGG+AGG | - | chr1.3:21062634-21062653 | MS.gene95919:CDS | 40.0% | |
ACAAGAGATGTGAGATCAGA+AGG | + | chr1.3:21062787-21062806 | None:intergenic | 40.0% | |
ACACTTCCATTTGAGCCTTA+TGG | - | chr1.3:21062221-21062240 | MS.gene95919:intron | 40.0% | |
AGGATTGATGAACAACATCC+TGG | - | chr1.3:21061443-21061462 | MS.gene95919:CDS | 40.0% | |
AGTAATTTACCCCAGCATCT+TGG | + | chr1.3:21060688-21060707 | None:intergenic | 40.0% | |
AGTGGAGTCTTCTGGTATTT+GGG | - | chr1.3:21062552-21062571 | MS.gene95919:CDS | 40.0% | |
AGTTGGGATGACAAGTATCT+TGG | - | chr1.3:21062378-21062397 | MS.gene95919:intron | 40.0% | |
ATATTCCAGCAGCGGATATA+AGG | - | chr1.3:21061909-21061928 | MS.gene95919:intron | 40.0% | |
CAACACCACTACTACATTGA+AGG | + | chr1.3:21062759-21062778 | None:intergenic | 40.0% | |
CAACTGAACTATGCTTACAC+AGG | + | chr1.3:21061643-21061662 | None:intergenic | 40.0% | |
CAAGAGATGTGAGATCAGAA+GGG | + | chr1.3:21062786-21062805 | None:intergenic | 40.0% | |
CCAAACCCTAATACATTGGA+TGG | - | chr1.3:21063371-21063390 | MS.gene95919:CDS | 40.0% | |
CCATCCAATGTATTAGGGTT+TGG | + | chr1.3:21063374-21063393 | None:intergenic | 40.0% | |
CTGACTCAGATCATCAATGT+TGG | - | chr1.3:21061381-21061400 | MS.gene95919:CDS | 40.0% | |
CTGTGTAAGCATAGTTCAGT+TGG | - | chr1.3:21061641-21061660 | MS.gene95919:CDS | 40.0% | |
GATGCTTAACCATTGCCTTT+GGG | - | chr1.3:21062996-21063015 | MS.gene95919:intron | 40.0% | |
GCAAAAACATATTCCAGCAG+CGG | - | chr1.3:21061901-21061920 | MS.gene95919:intron | 40.0% | |
GCATTAGCAGCCATAAAATG+GGG | - | chr1.3:21061296-21061315 | MS.gene95919:CDS | 40.0% | |
GTGCACAGATTGAAAAGCAA+TGG | + | chr1.3:21061513-21061532 | None:intergenic | 40.0% | |
GTTGGAGGATATTATGATGC+TGG | - | chr1.3:21061167-21061186 | MS.gene95919:intron | 40.0% | |
GTTTCTGTTGCACCTTTAGT+TGG | - | chr1.3:21063470-21063489 | MS.gene95919:CDS | 40.0% | |
TAACCTAGACGAACAAAGAC+GGG | + | chr1.3:21061067-21061086 | None:intergenic | 40.0% | |
TGATGCTTAACCATTGCCTT+TGG | - | chr1.3:21062995-21063014 | MS.gene95919:intron | 40.0% | |
TGCACAAATTCTTGCTGCAA+AGG | - | chr1.3:21062401-21062420 | MS.gene95919:intron | 40.0% | |
TGCACCAAACCCTAATACAT+TGG | - | chr1.3:21063367-21063386 | MS.gene95919:CDS | 40.0% | |
TTAAAGATGGCCAAGATGCT+GGG | - | chr1.3:21060675-21060694 | MS.gene95919:CDS | 40.0% | |
! | ATGAGTTATATGGTGGGGTA+TGG | - | chr1.3:21063233-21063252 | MS.gene95919:intron | 40.0% |
! | CAACATTGATGATCTGAGTC+AGG | + | chr1.3:21061383-21061402 | None:intergenic | 40.0% |
! | GCTGGAGACAATTTGAAGTT+AGG | - | chr1.3:21061185-21061204 | MS.gene95919:intron | 40.0% |
! | GTAGTCTGTTCCCCATTTTA+TGG | + | chr1.3:21061309-21061328 | None:intergenic | 40.0% |
! | GTTGGTGTTCTTGCTTATCT+AGG | - | chr1.3:21063488-21063507 | MS.gene95919:CDS | 40.0% |
! | TGCATGAACTAGCATTTTGG+AGG | + | chr1.3:21061546-21061565 | None:intergenic | 40.0% |
!! | CTGGAATATGTTTTTGCTGC+TGG | + | chr1.3:21061898-21061917 | None:intergenic | 40.0% |
!! | GAATATGTTTTTGCTGCTGG+TGG | + | chr1.3:21061895-21061914 | None:intergenic | 40.0% |
!! | TTACTTTTGGTGGTAGCCAT+CGG | - | chr1.3:21060943-21060962 | MS.gene95919:intron | 40.0% |
!!! | TTTTTTGAGGGACAACGTTC+AGG | - | chr1.3:21060605-21060624 | MS.gene95919:CDS | 40.0% |
AACCAGAGAGTAACATGGAG+AGG | - | chr1.3:21060641-21060660 | MS.gene95919:CDS | 45.0% | |
AAGCCATCTTTGCATCCTAC+TGG | + | chr1.3:21063326-21063345 | None:intergenic | 45.0% | |
AATTACTATGGGCAGCAGCA+TGG | - | chr1.3:21062274-21062293 | MS.gene95919:intron | 45.0% | |
ACATTATTATGTGCAGGGGC+TGG | - | chr1.3:21061673-21061692 | MS.gene95919:CDS | 45.0% | |
ACCAGAGAGTAACATGGAGA+GGG | - | chr1.3:21060642-21060661 | MS.gene95919:CDS | 45.0% | |
ATTATTATGTGCAGGGGCTG+GGG | - | chr1.3:21061675-21061694 | MS.gene95919:CDS | 45.0% | |
CACATCTCTTGTTCAAGCTC+AGG | - | chr1.3:21062795-21062814 | MS.gene95919:CDS | 45.0% | |
CAGAGGATATGTCAACACCT+AGG | - | chr1.3:21061411-21061430 | MS.gene95919:CDS | 45.0% | |
CAGTGGAGTCTTCTGGTATT+TGG | - | chr1.3:21062551-21062570 | MS.gene95919:CDS | 45.0% | |
CATGTGCAGATTGACCTAGT+TGG | - | chr1.3:21061149-21061168 | MS.gene95919:intron | 45.0% | |
CATGTTACTCTCTGGTTAGG+AGG | + | chr1.3:21060638-21060657 | None:intergenic | 45.0% | |
CATTATTATGTGCAGGGGCT+GGG | - | chr1.3:21061674-21061693 | MS.gene95919:CDS | 45.0% | |
CTCCATGTTACTCTCTGGTT+AGG | + | chr1.3:21060641-21060660 | None:intergenic | 45.0% | |
CTCCTAACCAGAGAGTAACA+TGG | - | chr1.3:21060636-21060655 | MS.gene95919:CDS | 45.0% | |
CTTAAAGATGGCCAAGATGC+TGG | - | chr1.3:21060674-21060693 | MS.gene95919:CDS | 45.0% | |
CTTAAGGTCATGCTAACCAG+TGG | - | chr1.3:21062862-21062881 | MS.gene95919:CDS | 45.0% | |
GCTTCCCTTCAATGTAGTAG+TGG | - | chr1.3:21062751-21062770 | MS.gene95919:CDS | 45.0% | |
GGGGATTCTGCACTTAAAGA+TGG | - | chr1.3:21060662-21060681 | MS.gene95919:CDS | 45.0% | |
GGTGCAACAGAAACTGTAGT+TGG | + | chr1.3:21063464-21063483 | None:intergenic | 45.0% | |
TAAAGACACCATCCAACCGA+TGG | + | chr1.3:21060962-21060981 | None:intergenic | 45.0% | |
TAAAGATGGCCAAGATGCTG+GGG | - | chr1.3:21060676-21060695 | MS.gene95919:CDS | 45.0% | |
TCAATGTTGGCAAAGACCAG+AGG | - | chr1.3:21061394-21061413 | MS.gene95919:CDS | 45.0% | |
TCACCAGTAGGATGCAAAGA+TGG | - | chr1.3:21063320-21063339 | MS.gene95919:intron | 45.0% | |
! | CTGTAGTTGGCTCTCCTAAT+TGG | + | chr1.3:21063451-21063470 | None:intergenic | 45.0% |
!! | ATGAATAAGTAGGGGTGTCC+GGG | + | chr1.3:21061708-21061727 | None:intergenic | 45.0% |
!! | CTAGGTGTTGACATATCCTC+TGG | + | chr1.3:21061413-21061432 | None:intergenic | 45.0% |
!! | GATGAATAAGTAGGGGTGTC+CGG | + | chr1.3:21061709-21061728 | None:intergenic | 45.0% |
!!! | ATAATATTTTTTATTACTTT+TGG | - | chr1.3:21060930-21060949 | MS.gene95919:intron | 5.0% |
AACCAGTGGCATCAGGGTAA+TGG | - | chr1.3:21062876-21062895 | MS.gene95919:CDS | 50.0% | |
AACCAGTGTCCCAAAGGCAA+TGG | + | chr1.3:21063008-21063027 | None:intergenic | 50.0% | |
AGTGCTAACCAGTGTCCCAA+AGG | + | chr1.3:21063014-21063033 | None:intergenic | 50.0% | |
CATGCTAACCAGTGGCATCA+GGG | - | chr1.3:21062870-21062889 | MS.gene95919:CDS | 50.0% | |
CCAGAGAGTAACATGGAGAG+GGG | - | chr1.3:21060643-21060662 | MS.gene95919:CDS | 50.0% | |
CCTCTCAAGCCCTAGCTATA+AGG | + | chr1.3:21063095-21063114 | None:intergenic | 50.0% | |
CCTTATAGCTAGGGCTTGAG+AGG | - | chr1.3:21063092-21063111 | MS.gene95919:intron | 50.0% | |
CTGCTGGTGGGATACTATTG+TGG | + | chr1.3:21061882-21061901 | None:intergenic | 50.0% | |
GATCACCTTATATCCGCTGC+TGG | + | chr1.3:21061917-21061936 | None:intergenic | 50.0% | |
GTGCAGATTGACCTAGTTGG+AGG | - | chr1.3:21061152-21061171 | MS.gene95919:intron | 50.0% | |
TCATGCTAACCAGTGGCATC+AGG | - | chr1.3:21062869-21062888 | MS.gene95919:CDS | 50.0% | |
TTGCCCGTCTTTGTTCGTCT+AGG | - | chr1.3:21061061-21061080 | MS.gene95919:intron | 50.0% | |
! | TGCTGAAACTGCTGCTGCTT+TGG | - | chr1.3:21061478-21061497 | MS.gene95919:CDS | 50.0% |
! | TGGCATCAGGGTAATGGTCA+AGG | - | chr1.3:21062882-21062901 | MS.gene95919:CDS | 50.0% |
!! | AACCATTGCCTTTGGGACAC+TGG | - | chr1.3:21063003-21063022 | MS.gene95919:intron | 50.0% |
!! | TGAATAAGTAGGGGTGTCCG+GGG | + | chr1.3:21061707-21061726 | None:intergenic | 50.0% |
!! | TTTTGGTGGTAGCCATCGGT+TGG | - | chr1.3:21060947-21060966 | MS.gene95919:intron | 50.0% |
!!! | GCTTGTTTTAGATGGGGCAG+TGG | - | chr1.3:21062534-21062553 | MS.gene95919:CDS | 50.0% |
CCCCTCTCCATGTTACTCTC+TGG | + | chr1.3:21060646-21060665 | None:intergenic | 55.0% | |
GACCATTACCCTGATGCCAC+TGG | + | chr1.3:21062881-21062900 | None:intergenic | 55.0% | |
TCAGCAGCAAGATCAGAGCC+AGG | + | chr1.3:21061464-21061483 | None:intergenic | 55.0% | |
TCTTGCACCTCCATTGTCGC+TGG | + | chr1.3:21062349-21062368 | None:intergenic | 55.0% | |
TGGCTCCTCCAAGGTAATCG+AGG | + | chr1.3:21062329-21062348 | None:intergenic | 55.0% | |
CTTGGAGGAGCCAGCGACAA+TGG | - | chr1.3:21062336-21062355 | MS.gene95919:intron | 60.0% | |
GATGGGGCAGTGGAGTCTTC+TGG | - | chr1.3:21062544-21062563 | MS.gene95919:CDS | 60.0% | |
! | GGTGGTAGCCATCGGTTGGA+TGG | - | chr1.3:21060951-21060970 | MS.gene95919:intron | 60.0% |
!! | CATTGTCGCTGGCTCCTCCA+AGG | + | chr1.3:21062338-21062357 | None:intergenic | 60.0% |
GGAGGAGCCAGCGACAATGG+AGG | - | chr1.3:21062339-21062358 | MS.gene95919:intron | 65.0% | |
AGGGGCTGGGGTTCGAACCC+CGG | - | chr1.3:21061687-21061706 | MS.gene95919:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 21060548 | 21063514 | 21060548 | ID=MS.gene95919 |
chr1.3 | mRNA | 21060548 | 21063514 | 21060548 | ID=MS.gene95919.t1;Parent=MS.gene95919 |
chr1.3 | exon | 21063365 | 21063514 | 21063365 | ID=MS.gene95919.t1.exon1;Parent=MS.gene95919.t1 |
chr1.3 | CDS | 21063365 | 21063514 | 21063365 | ID=cds.MS.gene95919.t1;Parent=MS.gene95919.t1 |
chr1.3 | exon | 21062491 | 21062904 | 21062491 | ID=MS.gene95919.t1.exon2;Parent=MS.gene95919.t1 |
chr1.3 | CDS | 21062491 | 21062904 | 21062491 | ID=cds.MS.gene95919.t1;Parent=MS.gene95919.t1 |
chr1.3 | exon | 21062132 | 21062218 | 21062132 | ID=MS.gene95919.t1.exon3;Parent=MS.gene95919.t1 |
chr1.3 | CDS | 21062132 | 21062218 | 21062132 | ID=cds.MS.gene95919.t1;Parent=MS.gene95919.t1 |
chr1.3 | exon | 21061640 | 21061792 | 21061640 | ID=MS.gene95919.t1.exon4;Parent=MS.gene95919.t1 |
chr1.3 | CDS | 21061640 | 21061792 | 21061640 | ID=cds.MS.gene95919.t1;Parent=MS.gene95919.t1 |
chr1.3 | exon | 21061246 | 21061527 | 21061246 | ID=MS.gene95919.t1.exon5;Parent=MS.gene95919.t1 |
chr1.3 | CDS | 21061246 | 21061527 | 21061246 | ID=cds.MS.gene95919.t1;Parent=MS.gene95919.t1 |
chr1.3 | exon | 21060548 | 21060862 | 21060548 | ID=MS.gene95919.t1.exon6;Parent=MS.gene95919.t1 |
chr1.3 | CDS | 21060548 | 21060862 | 21060548 | ID=cds.MS.gene95919.t1;Parent=MS.gene95919.t1 |
Gene Sequence |
Protein sequence |