AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070498

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070498.t1 MTR_5g085730 97.826 506 11 0 1 506 1 506 0.0 1045
MS.gene070498.t1 MTR_3g080190 82.222 495 88 0 12 506 21 515 0.0 863
MS.gene070498.t1 MTR_5g093590 71.687 498 140 1 4 500 7 504 0.0 749
MS.gene070498.t1 MTR_8g099410 60.515 466 182 1 31 496 28 491 0.0 616
MS.gene070498.t1 MTR_8g099410 60.515 466 182 1 31 496 28 491 0.0 615
MS.gene070498.t1 MTR_4g074960 56.556 511 210 5 29 536 26 527 0.0 590
MS.gene070498.t1 MTR_1g037340 50.725 483 224 6 17 494 6 479 8.46e-165 477
MS.gene070498.t1 MTR_5g010000 49.167 480 224 7 22 497 30 493 1.41e-152 446
MS.gene070498.t1 MTR_5g009970 47.771 471 227 6 30 497 40 494 1.05e-151 444
MS.gene070498.t1 MTR_3g105230 45.248 484 248 6 1 484 1 467 6.53e-145 426
MS.gene070498.t1 MTR_8g104820 47.234 470 235 8 31 496 30 490 3.72e-144 424
MS.gene070498.t1 MTR_3g080810 46.908 469 236 8 31 496 35 493 2.32e-142 420
MS.gene070498.t1 MTR_3g023740 45.090 499 257 6 1 499 1 482 2.57e-141 417
MS.gene070498.t1 MTR_3g117500 44.000 475 255 6 26 497 19 485 9.55e-141 416
MS.gene070498.t1 MTR_4g035955 45.416 469 241 7 29 496 12 466 2.73e-140 414
MS.gene070498.t1 MTR_4g035930 42.739 482 259 8 17 496 1 467 3.12e-136 403
MS.gene070498.t1 MTR_3g010330 45.532 470 238 7 31 496 25 480 2.75e-133 396
MS.gene070498.t1 MTR_1g088190 45.648 471 224 9 31 498 39 480 3.78e-132 393
MS.gene070498.t1 MTR_4g035975 44.792 480 234 10 31 496 27 489 1.59e-131 392
MS.gene070498.t1 MTR_5g009970 46.729 428 209 6 73 497 9 420 2.13e-131 389
MS.gene070498.t1 MTR_3g113720 44.798 471 246 9 32 497 58 519 1.55e-129 388
MS.gene070498.t1 MTR_8g075990 45.223 471 244 10 32 497 64 525 1.02e-124 376
MS.gene070498.t1 MTR_5g009970 44.988 409 206 6 92 497 1 393 3.08e-119 357
MS.gene070498.t1 MTR_2g028480 39.779 543 260 17 2 491 56 584 4.86e-101 318
MS.gene070498.t1 MTR_3g082440 38.416 505 269 17 27 505 112 600 1.72e-88 285
MS.gene070498.t1 MTR_5g009970 44.282 341 171 6 160 497 1 325 6.95e-88 274
MS.gene070498.t1 MTR_3g090540 36.436 505 276 17 29 505 105 592 2.04e-85 276
MS.gene070498.t1 MTR_1g088190 44.089 313 144 8 31 340 39 323 2.48e-70 229
MS.gene070498.t1 MTR_1g037320 55.280 161 71 1 92 252 1 160 3.81e-46 163
MS.gene070498.t1 MTR_1g037320 49.180 122 61 1 373 494 169 289 6.74e-34 130
MS.gene070498.t1 MTR_7g108925 45.283 159 86 1 340 498 43 200 1.72e-44 157
MS.gene070498.t1 MTR_0393s0050 44.286 140 78 0 340 479 20 159 4.35e-37 135
MS.gene070498.t1 MTR_4g128810 42.466 146 79 3 347 491 187 328 1.30e-26 111
MS.gene070498.t1 MTR_4g047570 34.211 114 54 3 280 393 2 94 2.44e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070498.t1 AT2G32990 75.301 498 114 2 4 495 9 503 0.0 796
MS.gene070498.t1 AT1G64390 61.159 466 179 1 31 496 25 488 0.0 616
MS.gene070498.t1 AT4G11050 60.510 471 184 1 27 497 22 490 0.0 612
MS.gene070498.t1 AT4G11050 60.510 471 184 1 27 497 22 490 0.0 611
MS.gene070498.t1 AT4G11050 60.510 471 184 1 27 497 22 490 0.0 609
MS.gene070498.t1 AT1G48930 57.940 466 194 2 30 495 29 492 0.0 545
MS.gene070498.t1 AT2G44550 49.177 486 237 5 9 494 12 487 1.08e-160 466
MS.gene070498.t1 AT2G44540 48.765 486 240 5 9 494 12 488 1.97e-158 461
MS.gene070498.t1 AT2G44560 49.177 486 238 5 9 494 12 488 2.20e-158 461
MS.gene070498.t1 AT2G44570 47.541 488 247 6 10 496 12 491 2.96e-155 453
MS.gene070498.t1 AT1G70710 45.875 497 256 7 1 496 1 485 8.95e-148 434
MS.gene070498.t1 AT4G02290 47.974 469 234 6 31 498 52 511 1.03e-145 429
MS.gene070498.t1 AT1G23210 45.603 489 256 6 9 496 6 485 2.88e-145 427
MS.gene070498.t1 AT1G02800 48.498 466 226 7 31 494 43 496 5.05e-144 424
MS.gene070498.t1 AT4G23560 48.529 476 223 8 26 497 18 475 2.15e-143 422
MS.gene070498.t1 AT4G39010 45.319 470 245 7 31 496 29 490 1.14e-140 416
MS.gene070498.t1 AT3G43860 43.976 498 256 8 3 496 5 483 2.86e-140 414
MS.gene070498.t1 AT3G43860 43.976 498 256 8 3 496 5 483 2.86e-140 414
MS.gene070498.t1 AT4G09740 47.689 476 227 8 26 497 18 475 4.86e-140 413
MS.gene070498.t1 AT1G19940 47.186 462 234 7 31 491 48 500 9.35e-135 401
MS.gene070498.t1 AT1G19940 47.186 462 234 7 31 491 48 500 9.35e-135 401
MS.gene070498.t1 AT1G75680 47.265 457 231 7 32 487 58 505 1.18e-134 401
MS.gene070498.t1 AT4G39000 45.532 470 244 7 31 496 25 486 1.34e-133 397
MS.gene070498.t1 AT1G22880 43.121 487 258 10 16 496 5 478 1.80e-131 392
MS.gene070498.t1 AT1G71380 43.443 488 257 11 15 496 4 478 1.21e-130 389
MS.gene070498.t1 AT4G38990 43.232 495 260 10 13 496 5 489 4.01e-124 373
MS.gene070498.t1 AT4G02290 45.343 408 213 6 92 498 1 399 3.90e-114 344
MS.gene070498.t1 AT2G44570 44.750 400 212 6 10 408 12 403 8.89e-111 336
MS.gene070498.t1 AT1G22880 41.523 407 223 9 92 496 1 394 5.03e-104 318
MS.gene070498.t1 AT4G39010 43.989 366 194 6 31 392 29 387 1.08e-103 317
MS.gene070498.t1 AT1G19940 45.330 364 194 5 31 393 48 407 6.08e-97 301
MS.gene070498.t1 AT5G49720 42.041 490 239 17 31 491 108 581 2.26e-93 298
MS.gene070498.t1 AT1G65610 36.874 499 276 17 31 505 116 599 9.95e-86 278
MS.gene070498.t1 AT4G24260 41.224 490 243 17 31 491 108 581 7.26e-85 275
MS.gene070498.t1 AT4G38990 40.997 361 183 6 13 372 5 336 1.94e-79 253
MS.gene070498.t1 AT1G22880 45.714 315 154 8 16 324 5 308 1.32e-77 248
MS.gene070498.t1 AT4G24260 38.875 391 201 14 31 393 108 488 3.19e-53 188
MS.gene070498.t1 AT4G24260 39.660 353 183 11 31 358 108 455 8.03e-53 186

Find 105 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACAAGTTGATTACATTT+TGG 0.114624 5.4:+67792408 MS.gene070498:CDS
ACACAATGGAAGCAATTAAA+TGG 0.182204 5.4:+67789908 MS.gene070498:CDS
AAGGAGAATAAAGGGTTTAT+TGG 0.201878 5.4:+67792523 MS.gene070498:CDS
ATGGGCCTAGTTACCCTAAA+AGG 0.230203 5.4:+67792467 MS.gene070498:CDS
GCAGGTGATCATGTAAAATT+TGG 0.275934 5.4:+67789799 MS.gene070498:CDS
TCAAAATTGTCTTGCCAATC+AGG 0.280992 5.4:-67792625 None:intergenic
TCAGGACCATGTAGAAAATA+TGG 0.300137 5.4:+67794176 MS.gene070498:intron
GGCTGCCACGTGGCTTTATA+AGG 0.325090 5.4:+67790739 MS.gene070498:CDS
ACTAAGTAGCTCATGTTCAT+AGG 0.326589 5.4:-67792439 None:intergenic
AGATCCTAACCCTAATGTTT+TGG 0.327088 5.4:+67792582 MS.gene070498:CDS
AACAATGTTGCATGAGAAAA+TGG 0.330935 5.4:-67789479 None:intergenic
ATGTCATATAAGGAGAATAA+AGG 0.332352 5.4:+67792514 MS.gene070498:CDS
GTACTCAAGGGTATGATAAT+TGG 0.334494 5.4:+67792548 MS.gene070498:CDS
TTTGTGTAGTTGTTTGAGTT+TGG 0.335226 5.4:+67790626 MS.gene070498:intron
TGTTATTGTGTAGGTGGATT+TGG 0.335906 5.4:+67789759 MS.gene070498:intron
CAAAACTTAGAATTTCTTCA+TGG 0.342767 5.4:-67792381 None:intergenic
ATGAGCTACTTAGTGGGTTA+TGG 0.343248 5.4:+67792448 MS.gene070498:CDS
GATCATTCTGCTCTCATTGA+TGG 0.350259 5.4:+67789642 MS.gene070498:CDS
AAAGCTCCAACCAAAACATT+AGG 0.350493 5.4:-67792592 None:intergenic
CTTTGGTTGGTGGTCCTGAT+TGG 0.363936 5.4:+67792611 MS.gene070498:CDS
ACCTCTGCCCACAAAACATT+TGG 0.367502 5.4:-67789964 None:intergenic
AGCATCAATTATGTCATATA+AGG 0.370317 5.4:+67792504 MS.gene070498:CDS
TTACTGTGACAATGCTTTCA+TGG 0.375820 5.4:+67789836 MS.gene070498:CDS
AACGCTGTGCTTCAAAATAA+AGG 0.388474 5.4:-67789581 None:intergenic
TGTCATATAAGGAGAATAAA+GGG 0.398718 5.4:+67792515 MS.gene070498:CDS
CACAATGGAAGCAATTAAAT+GGG 0.416525 5.4:+67789909 MS.gene070498:CDS
GATTCATGGATGAGTTGTTA+TGG 0.417460 5.4:+67790717 MS.gene070498:CDS
TGAGCTACTTAGTGGGTTAT+GGG 0.420359 5.4:+67792449 MS.gene070498:CDS
CTTGATGTTGTCATGTCCTC+TGG 0.421252 5.4:-67790125 None:intergenic
ATTAACAATGCTAATAACTT+TGG 0.421348 5.4:+67790794 MS.gene070498:CDS
GCTAATAACTTTGGTGGCAC+TGG 0.422916 5.4:+67790803 MS.gene070498:CDS
ATTCATGGATGAGTTGTTAT+GGG 0.425900 5.4:+67790718 MS.gene070498:CDS
ATCCCAGCTGAACTCTGTTA+TGG 0.429035 5.4:-67790831 None:intergenic
TCTCCAACTCATTGCTTCTC+AGG 0.431384 5.4:+67790868 MS.gene070498:CDS
CAAGCGACGCGTTGATTGTA+AGG 0.439174 5.4:-67789615 None:intergenic
TGTAGGTGGATTTGGTTGGA+GGG 0.441853 5.4:+67789767 MS.gene070498:intron
GTGTAGGTGGATTTGGTTGG+AGG 0.449210 5.4:+67789766 MS.gene070498:intron
AATCCTGGTTCAGATCTTGC+TGG 0.454479 5.4:+67790173 MS.gene070498:CDS
TAAGAATGGTGAAGATGAAA+AGG 0.458583 5.4:-67789509 None:intergenic
ATCTAAATACTCTTCTTTGT+CGG 0.460194 5.4:-67790765 None:intergenic
GAGTTTGGAGACAAGTATAG+AGG 0.461932 5.4:+67790641 MS.gene070498:CDS
GGTCCATAACAGAGTTCAGC+TGG 0.465205 5.4:+67790828 MS.gene070498:CDS
TGCGTCGGTGAGTGGATTCA+TGG 0.471209 5.4:+67790703 MS.gene070498:CDS
GGAAAATATGATGCAAGTGT+TGG 0.472006 5.4:+67790662 MS.gene070498:CDS
GGGTTTATTGGTTGTACTCA+AGG 0.473441 5.4:+67792535 MS.gene070498:CDS
AACAATGCTAATAACTTTGG+TGG 0.473656 5.4:+67790797 MS.gene070498:CDS
AAGCTCCAACCAAAACATTA+GGG 0.475626 5.4:-67792591 None:intergenic
TGGAGAGACAGCAGCAGCTA+TGG 0.477469 5.4:+67790193 MS.gene070498:CDS
GTTGGAGGGTATTATGATGC+AGG 0.477816 5.4:+67789781 MS.gene070498:CDS
GAATATTTGCAAGAAATTGA+AGG 0.478166 5.4:+67789868 MS.gene070498:CDS
GTGATATACTTGACCAATAT+AGG 0.486868 5.4:+67792155 MS.gene070498:CDS
CCAACCAAAACATTAGGGTT+AGG 0.487034 5.4:-67792586 None:intergenic
CTCATTGATGGTCTAGAACA+AGG 0.493370 5.4:+67789654 MS.gene070498:CDS
TTGGTTGGAGCTTTGGTTGG+TGG 0.496064 5.4:+67792601 MS.gene070498:CDS
TGTAAAATTTGGTTTACCAA+TGG 0.496239 5.4:+67789810 MS.gene070498:CDS
TACTGTGACAATGCTTTCAT+GGG 0.500919 5.4:+67789837 MS.gene070498:CDS
AGCTGGGATGTCAAATATGC+AGG 0.502495 5.4:+67790845 MS.gene070498:CDS
TATGAACATGAGCTACTTAG+TGG 0.502664 5.4:+67792441 MS.gene070498:CDS
TAATTGATGCTCCTCTATGA+TGG 0.503574 5.4:-67792492 None:intergenic
CTTACAATCAACGCGTCGCT+TGG 0.503904 5.4:+67789616 MS.gene070498:CDS
AGCTGGAGTTCTTTCCACAT+TGG 0.505872 5.4:-67792230 None:intergenic
CTAAGTAGCTCATGTTCATA+GGG 0.511542 5.4:-67792438 None:intergenic
AAGATAGATGAAAACAATCC+TGG 0.513053 5.4:+67790158 MS.gene070498:CDS
GTGACACTGATCATTATTGT+TGG 0.516338 5.4:+67790096 MS.gene070498:CDS
TTGAATGTTAGTCGTAAGAA+TGG 0.521671 5.4:-67789523 None:intergenic
AGTTACTATGCGTCGGTGAG+TGG 0.525539 5.4:+67790695 MS.gene070498:CDS
CAACGCTTGAATGCATTCGA+TGG 0.527406 5.4:+67794201 MS.gene070498:CDS
TCAAGGTAGGTTCTTCGTGT+TGG 0.534241 5.4:-67794225 None:intergenic
CATCGAATGCATTCAAGCGT+TGG 0.537159 5.4:-67794200 None:intergenic
TGGGCCTAGTTACCCTAAAA+GGG 0.540813 5.4:+67792468 MS.gene070498:CDS
TTGCAAGAAATTGAAGGTGC+TGG 0.541661 5.4:+67789874 MS.gene070498:CDS
ATAACTTTGGTGGCACTGGT+TGG 0.542812 5.4:+67790807 MS.gene070498:CDS
CTAACATATAGTAATCCAGC+TGG 0.543246 5.4:-67792247 None:intergenic
ATTGTGTAGGTGGATTTGGT+TGG 0.546260 5.4:+67789763 MS.gene070498:intron
GTATGATAATTGGTACAGTA+AGG 0.548590 5.4:+67792558 MS.gene070498:CDS
TGATCGATCTACATCACCAC+GGG 0.548610 5.4:+67794245 MS.gene070498:CDS
GGTTTATTGGTTGTACTCAA+GGG 0.549775 5.4:+67792536 MS.gene070498:CDS
TTACCTGAGAAGCAATGAGT+TGG 0.557016 5.4:-67790871 None:intergenic
TCATTGATGGTCTAGAACAA+GGG 0.565728 5.4:+67789655 MS.gene070498:CDS
CCTAAAAGGGTCCATCATAG+AGG 0.567742 5.4:+67792481 MS.gene070498:CDS
TAAATACTCTTCTTTGTCGG+TGG 0.571018 5.4:-67790762 None:intergenic
AATGTGGAAAGAACTCCAGC+TGG 0.574282 5.4:+67792232 MS.gene070498:CDS
ATTGTCACAGTAAATGCCAT+TGG 0.581317 5.4:-67789826 None:intergenic
GCATATTGAAGATAATAAGA+TGG 0.583410 5.4:+67792729 MS.gene070498:CDS
AAAAGTAAATGAGAGTAATG+TGG 0.585609 5.4:-67790248 None:intergenic
GTGGTGATGTAGATCGATCA+AGG 0.589135 5.4:-67794242 None:intergenic
GAATTGTCTTAGGTTGGTGA+TGG 0.590307 5.4:+67790074 MS.gene070498:intron
GATTTAGTACCTGTTGAGCA+TGG 0.594061 5.4:-67790274 None:intergenic
CATTGATGGTCTAGAACAAG+GGG 0.608466 5.4:+67789656 MS.gene070498:CDS
GATTACTATATGTTAGACAA+TGG 0.612919 5.4:+67792254 MS.gene070498:CDS
TGATGTAGATCGATCAAGGT+AGG 0.621540 5.4:-67794238 None:intergenic
AGTGAAAAGTTACTATGCGT+CGG 0.625933 5.4:+67790688 MS.gene070498:CDS
TCTCCAGCAAGATCTGAACC+AGG 0.626113 5.4:-67790176 None:intergenic
ATGAACATGAGCTACTTAGT+GGG 0.640186 5.4:+67792442 MS.gene070498:CDS
GTCCATAACAGAGTTCAGCT+GGG 0.646191 5.4:+67790829 MS.gene070498:CDS
AAACATCAATGGCACCAATG+TGG 0.651345 5.4:+67792216 MS.gene070498:CDS
TTATTGTTGGCAAAGACCAG+AGG 0.655563 5.4:+67790109 MS.gene070498:CDS
GCTGTGCTTCAAAATAAAGG+AGG 0.685635 5.4:-67789578 None:intergenic
TTGATCGATCTACATCACCA+CGG 0.688769 5.4:+67794244 MS.gene070498:CDS
AGTTGTTATGGGCTGCCACG+TGG 0.694285 5.4:+67790729 MS.gene070498:CDS
ACTGTGACAATGCTTTCATG+GGG 0.697045 5.4:+67789838 MS.gene070498:CDS
ACAATGGAAGCAATTAAATG+GGG 0.705575 5.4:+67789910 MS.gene070498:CDS
TGGTGAATTACAACACACAA+TGG 0.711977 5.4:+67789894 MS.gene070498:CDS
GGTGGCCTTATAAAGCCACG+TGG 0.802325 5.4:-67790744 None:intergenic
GATCGATCTACATCACCACG+GGG 0.817432 5.4:+67794246 MS.gene070498:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATATTATATTAAAA+AGG + chr5.4:67791143-67791162 MS.gene070498:intron 0.0%
!! TTATATATTTATTTATTTAA+AGG - chr5.4:67792785-67792804 None:intergenic 0.0%
!!! AGATTTGTTATTATAAATTT+TGG + chr5.4:67792952-67792971 MS.gene070498:intron 10.0%
!!! GATTTGTTATTATAAATTTT+GGG + chr5.4:67792953-67792972 MS.gene070498:intron 10.0%
!! AAGTTTAATATATACCAAAT+TGG + chr5.4:67794104-67794123 MS.gene070498:intron 15.0%
!! ATATATTAAACTTATGAGAT+TGG - chr5.4:67794097-67794116 None:intergenic 15.0%
!! GAATGATAAAAATGTTAATT+TGG - chr5.4:67792854-67792873 None:intergenic 15.0%
!! TTCTTTGATTATCTTATTAT+TGG - chr5.4:67791964-67791983 None:intergenic 15.0%
!! TTTAAAAACTTTGGATAAAA+TGG - chr5.4:67790915-67790934 None:intergenic 15.0%
!!! AAACCATTTTTTAAAAACTT+TGG - chr5.4:67790924-67790943 None:intergenic 15.0%
!!! AAATTTGAAATGAATAAACT+TGG - chr5.4:67793027-67793046 None:intergenic 15.0%
!!! AAGTTAACTTTTTGAATAAA+TGG - chr5.4:67793846-67793865 None:intergenic 15.0%
!!! ATTTTTAATTGAATTGTCTT+AGG + chr5.4:67790064-67790083 MS.gene070498:intron 15.0%
!!! GAATGACATTTTAAAAATAA+TGG - chr5.4:67791406-67791425 None:intergenic 15.0%
!!! TATCCAAAGTTTTTAAAAAA+TGG + chr5.4:67790918-67790937 MS.gene070498:intron 15.0%
!!! TATTTTTAAAATGTCATTCA+TGG + chr5.4:67791407-67791426 MS.gene070498:intron 15.0%
!!! TCTATTTTCTTAAATTACTA+TGG - chr5.4:67790331-67790350 None:intergenic 15.0%
!! AAAGATAAAGAAGTGAAAAA+TGG - chr5.4:67793780-67793799 None:intergenic 20.0%
!! AATATTGTCAATTCTTTAGA+AGG + chr5.4:67793921-67793940 MS.gene070498:intron 20.0%
!! ATGCATGAATTAAAGTATAT+AGG + chr5.4:67791433-67791452 MS.gene070498:intron 20.0%
!! ATGTAACAAAATTAAAGAAG+TGG - chr5.4:67790020-67790039 None:intergenic 20.0%
!! ATTAACAATGCTAATAACTT+TGG + chr5.4:67790794-67790813 MS.gene070498:CDS 20.0%
!! CACAAAAACAAAACATATAT+TGG - chr5.4:67790612-67790631 None:intergenic 20.0%
!! TATATAGGTGTATTATCTTT+AGG + chr5.4:67791448-67791467 MS.gene070498:intron 20.0%
!! TATTATAATCATGATGATCT+CGG + chr5.4:67793969-67793988 MS.gene070498:intron 20.0%
!! TTTACTAATTTGAAAACGAT+AGG + chr5.4:67791368-67791387 MS.gene070498:intron 20.0%
!!! AAGACAATTTTGAAGATAAA+AGG + chr5.4:67792635-67792654 MS.gene070498:CDS 20.0%
!!! AATTGGTTTATATTCAAATC+AGG + chr5.4:67794158-67794177 MS.gene070498:intron 20.0%
!!! ATATGATTGTAATTCACTTT+TGG + chr5.4:67792753-67792772 MS.gene070498:intron 20.0%
!!! ATGCAACTATAATATTGATT+TGG + chr5.4:67790974-67790993 MS.gene070498:intron 20.0%
!!! ATTTGTTTTCTTAAACACAA+TGG - chr5.4:67790228-67790247 None:intergenic 20.0%
!!! GAATTTAATTTGATTTGACT+AGG + chr5.4:67790487-67790506 MS.gene070498:intron 20.0%
!!! GCTTAATATTTTCAAACAAA+AGG - chr5.4:67790539-67790558 None:intergenic 20.0%
!!! TGACATCAAAGATTTTAATA+TGG - chr5.4:67790951-67790970 None:intergenic 20.0%
!!! TTTTTCCTCAAAATTTTCTT+TGG + chr5.4:67791299-67791318 MS.gene070498:intron 20.0%
! AAAAGTAAATGAGAGTAATG+TGG - chr5.4:67790251-67790270 None:intergenic 25.0%
! AAGAAGTGGAATTGATTAAT+TGG - chr5.4:67790006-67790025 None:intergenic 25.0%
! AATATTCTTTAGATCTGTGA+AGG + chr5.4:67791220-67791239 MS.gene070498:intron 25.0%
! AATTTCGTAATTTGAGAAGT+TGG + chr5.4:67793467-67793486 MS.gene070498:intron 25.0%
! ACAAAAAAATGCAATGAAGT+AGG + chr5.4:67793363-67793382 MS.gene070498:intron 25.0%
! AGCATCAATTATGTCATATA+AGG + chr5.4:67792504-67792523 MS.gene070498:CDS 25.0%
! ATCTAAATACTCTTCTTTGT+CGG - chr5.4:67790768-67790787 None:intergenic 25.0%
! ATGTCATATAAGGAGAATAA+AGG + chr5.4:67792514-67792533 MS.gene070498:CDS 25.0%
! CAAAACTTAGAATTTCTTCA+TGG - chr5.4:67792384-67792403 None:intergenic 25.0%
! CAAGAAAGAAAGAAATTCAA+AGG - chr5.4:67793071-67793090 None:intergenic 25.0%
! GAATATTTGCAAGAAATTGA+AGG + chr5.4:67789868-67789887 MS.gene070498:CDS 25.0%
! GATTACTATATGTTAGACAA+TGG + chr5.4:67792254-67792273 MS.gene070498:CDS 25.0%
! GCATATTGAAGATAATAAGA+TGG + chr5.4:67792729-67792748 MS.gene070498:CDS 25.0%
! GGTTTAAAAACTGCAAAAAA+TGG - chr5.4:67792114-67792133 None:intergenic 25.0%
! TATTCAACTTTATCCAGATT+TGG + chr5.4:67791344-67791363 MS.gene070498:intron 25.0%
! TGTCATATAAGGAGAATAAA+GGG + chr5.4:67792515-67792534 MS.gene070498:CDS 25.0%
! TTAATTGAATTGTCTTAGGT+TGG + chr5.4:67790068-67790087 MS.gene070498:intron 25.0%
!! AATTAAAGTGATGTTGCTTA+TGG + chr5.4:67791559-67791578 MS.gene070498:intron 25.0%
!! TGTAAAATTTGGTTTACCAA+TGG + chr5.4:67789810-67789829 MS.gene070498:CDS 25.0%
!! TTTAAGTTTAGAGTGAAATG+TGG - chr5.4:67793178-67793197 None:intergenic 25.0%
!!! AACATTCAAGCTTTTGATTA+TGG + chr5.4:67789537-67789556 MS.gene070498:CDS 25.0%
!!! ATATTGTCACTTCAATTTTG+AGG - chr5.4:67790443-67790462 None:intergenic 25.0%
!!! ATCACAAGTTGATTACATTT+TGG + chr5.4:67792408-67792427 MS.gene070498:CDS 25.0%
!!! TCACAAGTTGATTACATTTT+GGG + chr5.4:67792409-67792428 MS.gene070498:CDS 25.0%
AAATGGAAGAAAAAGAAGTG+AGG - chr5.4:67793763-67793782 None:intergenic 30.0%
AACAATGCTAATAACTTTGG+TGG + chr5.4:67790797-67790816 MS.gene070498:CDS 30.0%
AACAATGTTGCATGAGAAAA+TGG - chr5.4:67789482-67789501 None:intergenic 30.0%
AAGATAGATGAAAACAATCC+TGG + chr5.4:67790158-67790177 MS.gene070498:CDS 30.0%
AAGGAGAATAAAGGGTTTAT+TGG + chr5.4:67792523-67792542 MS.gene070498:CDS 30.0%
AATCAAAAACTCACATGTCA+TGG + chr5.4:67792346-67792365 MS.gene070498:CDS 30.0%
ACAATGGAAGCAATTAAATG+GGG + chr5.4:67789910-67789929 MS.gene070498:CDS 30.0%
ACACAATGGAAGCAATTAAA+TGG + chr5.4:67789908-67789927 MS.gene070498:CDS 30.0%
ACTCTTATCTGTTAAGTTCT+TGG + chr5.4:67791257-67791276 MS.gene070498:intron 30.0%
ATGAAAAAGAAGATGAAGTG+TGG - chr5.4:67793673-67793692 None:intergenic 30.0%
ATTCATGGATGAGTTGTTAT+GGG + chr5.4:67790718-67790737 MS.gene070498:CDS 30.0%
CAAATTAGTAAAGCCAAATC+TGG - chr5.4:67791360-67791379 None:intergenic 30.0%
CACAATGGAAGCAATTAAAT+GGG + chr5.4:67789909-67789928 MS.gene070498:CDS 30.0%
CATCACTTACTTGATATTGT+GGG + chr5.4:67793391-67793410 MS.gene070498:intron 30.0%
CGTCAAACATTAAAACATGT+TGG + chr5.4:67790388-67790407 MS.gene070498:intron 30.0%
CTATGTACATGTTATTGTGT+AGG + chr5.4:67789750-67789769 MS.gene070498:intron 30.0%
GAACTTAACAGATAAGAGTA+TGG - chr5.4:67791256-67791275 None:intergenic 30.0%
GAGACATCATTAAAAGTGAT+CGG + chr5.4:67791886-67791905 MS.gene070498:intron 30.0%
GTATGATAATTGGTACAGTA+AGG + chr5.4:67792558-67792577 MS.gene070498:CDS 30.0%
GTGATATACTTGACCAATAT+AGG + chr5.4:67792155-67792174 MS.gene070498:CDS 30.0%
TAAGAATGGTGAAGATGAAA+AGG - chr5.4:67789512-67789531 None:intergenic 30.0%
TATATCATTCCATATCCTCT+TGG - chr5.4:67791605-67791624 None:intergenic 30.0%
TATATGTACCAACATCTTGT+TGG + chr5.4:67790365-67790384 MS.gene070498:intron 30.0%
TCATCACTTACTTGATATTG+TGG + chr5.4:67793390-67793409 MS.gene070498:intron 30.0%
TGTCTCAACAAAAACATCAA+TGG + chr5.4:67792205-67792224 MS.gene070498:CDS 30.0%
TTGAATGTTAGTCGTAAGAA+TGG - chr5.4:67789526-67789545 None:intergenic 30.0%
TTGAGAAGTTGGAAAAATGA+AGG + chr5.4:67793478-67793497 MS.gene070498:intron 30.0%
TTGCAAAAAGAGCTACTAAA+GGG - chr5.4:67792702-67792721 None:intergenic 30.0%
TTTGCAAAAAGAGCTACTAA+AGG - chr5.4:67792703-67792722 None:intergenic 30.0%
! AAAATTTTCTTTGGTCCATG+TGG + chr5.4:67791308-67791327 MS.gene070498:intron 30.0%
! ATGACATGTGAGTTTTTGAT+TGG - chr5.4:67792347-67792366 None:intergenic 30.0%
! ATGGACCAAAGAAAATTTTG+AGG - chr5.4:67791307-67791326 None:intergenic 30.0%
! ATGTTGTTTAGAGTGAAATG+TGG - chr5.4:67793223-67793242 None:intergenic 30.0%
! CTGCTAAAAGGAATTTGTTT+AGG - chr5.4:67794041-67794060 None:intergenic 30.0%
! GAACAATTTTATGCAAACTG+AGG + chr5.4:67792657-67792676 MS.gene070498:CDS 30.0%
! TATGTTTCTTGTGTTTTGCT+TGG - chr5.4:67792135-67792154 None:intergenic 30.0%
! TTTGTGTAGTTGTTTGAGTT+TGG + chr5.4:67790626-67790645 MS.gene070498:intron 30.0%
!! ACTGCTCTTTTAAAAATGGT+TGG + chr5.4:67791860-67791879 MS.gene070498:intron 30.0%
!! CTCTTTTAAAAATGGTTGGA+AGG + chr5.4:67791864-67791883 MS.gene070498:intron 30.0%
!! TAGCACTGCTCTTTTAAAAA+TGG + chr5.4:67791856-67791875 MS.gene070498:intron 30.0%
AAAGCTCCAACCAAAACATT+AGG - chr5.4:67792595-67792614 None:intergenic 35.0%
AAAGGCTCAAATTAGAGTTG+AGG - chr5.4:67793053-67793072 None:intergenic 35.0%
AACGCTGTGCTTCAAAATAA+AGG - chr5.4:67789584-67789603 None:intergenic 35.0%
AAGCTCCAACCAAAACATTA+GGG - chr5.4:67792594-67792613 None:intergenic 35.0%
AATCATCTTCTTCATCATGG+TGG + chr5.4:67793993-67794012 MS.gene070498:intron 35.0%
AATTCGCATGTACCTTTACA+TGG + chr5.4:67794066-67794085 MS.gene070498:intron 35.0%
ACTAAGTAGCTCATGTTCAT+AGG - chr5.4:67792442-67792461 None:intergenic 35.0%
AGAATGGTGAAAATAGCACT+TGG + chr5.4:67793437-67793456 MS.gene070498:intron 35.0%
AGTGAAAAGTTACTATGCGT+CGG + chr5.4:67790688-67790707 MS.gene070498:CDS 35.0%
AGTGTGATTTAACTCACACA+GGG + chr5.4:67793563-67793582 MS.gene070498:intron 35.0%
ATGAACATGAGCTACTTAGT+GGG + chr5.4:67792442-67792461 MS.gene070498:CDS 35.0%
ATTGTCACAGTAAATGCCAT+TGG - chr5.4:67789829-67789848 None:intergenic 35.0%
CTAACATATAGTAATCCAGC+TGG - chr5.4:67792250-67792269 None:intergenic 35.0%
CTAAGTAGCTCATGTTCATA+GGG - chr5.4:67792441-67792460 None:intergenic 35.0%
CTTGATATTGTGGGAGAAAT+TGG + chr5.4:67793400-67793419 MS.gene070498:intron 35.0%
GATTCATGGATGAGTTGTTA+TGG + chr5.4:67790717-67790736 MS.gene070498:CDS 35.0%
GCAATTTCGGAATTTCAGTT+GGG + chr5.4:67793586-67793605 MS.gene070498:intron 35.0%
GCACTATTTACCACAATACA+CGG - chr5.4:67791778-67791797 None:intergenic 35.0%
GCAGGTGATCATGTAAAATT+TGG + chr5.4:67789799-67789818 MS.gene070498:CDS 35.0%
GGAAAATATGATGCAAGTGT+TGG + chr5.4:67790662-67790681 MS.gene070498:CDS 35.0%
GGAAATCATCTTCTTCATCA+TGG + chr5.4:67793990-67794009 MS.gene070498:intron 35.0%
GTGACACTGATCATTATTGT+TGG + chr5.4:67790096-67790115 MS.gene070498:CDS 35.0%
TAAATACTCTTCTTTGTCGG+TGG - chr5.4:67790765-67790784 None:intergenic 35.0%
TAATTGATGCTCCTCTATGA+TGG - chr5.4:67792495-67792514 None:intergenic 35.0%
TACTGTGACAATGCTTTCAT+GGG + chr5.4:67789837-67789856 MS.gene070498:CDS 35.0%
TAGTACGCAAATCACCAATT+TGG - chr5.4:67794121-67794140 None:intergenic 35.0%
TAGTGTGATTTAACTCACAC+AGG + chr5.4:67793562-67793581 MS.gene070498:intron 35.0%
TATGAACATGAGCTACTTAG+TGG + chr5.4:67792441-67792460 MS.gene070498:CDS 35.0%
TCAAAATTGTCTTGCCAATC+AGG - chr5.4:67792628-67792647 None:intergenic 35.0%
TCAGGACCATGTAGAAAATA+TGG + chr5.4:67794176-67794195 MS.gene070498:intron 35.0%
TGCAAAAAGAGCTACTAAAG+GGG - chr5.4:67792701-67792720 None:intergenic 35.0%
TGGTGAATTACAACACACAA+TGG + chr5.4:67789894-67789913 MS.gene070498:CDS 35.0%
TGTACATGTTATTGTGTAGG+TGG + chr5.4:67789753-67789772 MS.gene070498:intron 35.0%
TTACTGTGACAATGCTTTCA+TGG + chr5.4:67789836-67789855 MS.gene070498:CDS 35.0%
TTAGTCATTGACAAAGCTAG+TGG + chr5.4:67791928-67791947 MS.gene070498:intron 35.0%
TTGATTGAAAGTTGCACTCT+AGG - chr5.4:67793121-67793140 None:intergenic 35.0%
! ACACTAGTCCAAATGTTTTG+TGG + chr5.4:67789956-67789975 MS.gene070498:CDS 35.0%
! AGATCCTAACCCTAATGTTT+TGG + chr5.4:67792582-67792601 MS.gene070498:CDS 35.0%
! CACTAGTCCAAATGTTTTGT+GGG + chr5.4:67789957-67789976 MS.gene070498:CDS 35.0%
! GAGTGAAATGTGGTAGTTTT+AGG - chr5.4:67793168-67793187 None:intergenic 35.0%
! GCTTGATGTCACTTCAATTA+CGG - chr5.4:67791024-67791043 None:intergenic 35.0%
! GGTTTATTGGTTGTACTCAA+GGG + chr5.4:67792536-67792555 MS.gene070498:CDS 35.0%
! GTACTCAAGGGTATGATAAT+TGG + chr5.4:67792548-67792567 MS.gene070498:CDS 35.0%
! GTTGGTCCATATTTTCTACA+TGG - chr5.4:67794185-67794204 None:intergenic 35.0%
! TCATTGATGGTCTAGAACAA+GGG + chr5.4:67789655-67789674 MS.gene070498:CDS 35.0%
! TGTCACTTCAATTACGGTTA+TGG - chr5.4:67791018-67791037 None:intergenic 35.0%
! TGTTATTGTGTAGGTGGATT+TGG + chr5.4:67789759-67789778 MS.gene070498:intron 35.0%
!! AATAAAGGAGGCTTTTTGAG+AGG - chr5.4:67789569-67789588 None:intergenic 35.0%
!! ACTCTGCTTTTGACCTATAT+TGG - chr5.4:67792171-67792190 None:intergenic 35.0%
!! ATAAAGGAGGCTTTTTGAGA+GGG - chr5.4:67789568-67789587 None:intergenic 35.0%
!! TATCTTTGTGAGAGCATTAG+TGG + chr5.4:67793793-67793812 MS.gene070498:intron 35.0%
!!! TAATGTTTTGGTTGGAGCTT+TGG + chr5.4:67792594-67792613 MS.gene070498:CDS 35.0%
AAACATCAATGGCACCAATG+TGG + chr5.4:67792216-67792235 MS.gene070498:CDS 40.0%
ACTGTGACAATGCTTTCATG+GGG + chr5.4:67789838-67789857 MS.gene070498:CDS 40.0%
AGCAGAAAGTGAAATGAAGC+AGG - chr5.4:67793709-67793728 None:intergenic 40.0%
ATTTCGGAATTTCAGTTGGG+AGG + chr5.4:67793589-67793608 MS.gene070498:intron 40.0%
CAAAAACTCACATGTCATGG+AGG + chr5.4:67792349-67792368 MS.gene070498:CDS 40.0%
CCAACCAAAACATTAGGGTT+AGG - chr5.4:67792589-67792608 None:intergenic 40.0%
CGGAGATGTGACTGAAAAAT+AGG - chr5.4:67791758-67791777 None:intergenic 40.0%
CTGAATGTGACGATTGCAAT+TGG + chr5.4:67794141-67794160 MS.gene070498:intron 40.0%
CTTATGGTTGAGCCTAATGT+TGG + chr5.4:67791575-67791594 MS.gene070498:intron 40.0%
CTTCATCATGGTGGTAACTT+TGG + chr5.4:67794002-67794021 MS.gene070498:intron 40.0%
GAGTTTGGAGACAAGTATAG+AGG + chr5.4:67790641-67790660 MS.gene070498:CDS 40.0%
GATCATTCTGCTCTCATTGA+TGG + chr5.4:67789642-67789661 MS.gene070498:CDS 40.0%
GATTTAGTACCTGTTGAGCA+TGG - chr5.4:67790277-67790296 None:intergenic 40.0%
GCATGTACCTTTACATGGAA+AGG + chr5.4:67794071-67794090 MS.gene070498:intron 40.0%
GCTGTGCTTCAAAATAAAGG+AGG - chr5.4:67789581-67789600 None:intergenic 40.0%
GGAGACGCTAATAGAGTTAT+AGG - chr5.4:67793006-67793025 None:intergenic 40.0%
GGCAATTTCGGAATTTCAGT+TGG + chr5.4:67793585-67793604 MS.gene070498:intron 40.0%
GTGTGATTTAACTCACACAG+GGG + chr5.4:67793564-67793583 MS.gene070498:intron 40.0%
TAGAAATATGCCACTCCACA+TGG - chr5.4:67791326-67791345 None:intergenic 40.0%
TCAGCGGTGGATAATATTGT+TGG + chr5.4:67793888-67793907 MS.gene070498:intron 40.0%
TCATCACTTAGTGTGTGTGA+TGG - chr5.4:67791046-67791065 None:intergenic 40.0%
TGATGTAGATCGATCAAGGT+AGG - chr5.4:67794241-67794260 None:intergenic 40.0%
TTACCTGAGAAGCAATGAGT+TGG - chr5.4:67790874-67790893 None:intergenic 40.0%
TTATTGTTGGCAAAGACCAG+AGG + chr5.4:67790109-67790128 MS.gene070498:CDS 40.0%
TTGATCGATCTACATCACCA+CGG + chr5.4:67794244-67794263 MS.gene070498:CDS 40.0%
TTTCGGAATTTCAGTTGGGA+GGG + chr5.4:67793590-67793609 MS.gene070498:intron 40.0%
! AAGTGAGGTATAAGTGTTGC+AGG - chr5.4:67793748-67793767 None:intergenic 40.0%
! ACTTTTACACCATGCTCAAC+AGG + chr5.4:67790265-67790284 MS.gene070498:CDS 40.0%
! ATGTGTGCTAGTGTTTTCAG+CGG + chr5.4:67793872-67793891 MS.gene070498:intron 40.0%
! ATTGTGTAGGTGGATTTGGT+TGG + chr5.4:67789763-67789782 MS.gene070498:intron 40.0%
! CATTGATGGTCTAGAACAAG+GGG + chr5.4:67789656-67789675 MS.gene070498:CDS 40.0%
! CTCATTGATGGTCTAGAACA+AGG + chr5.4:67789654-67789673 MS.gene070498:CDS 40.0%
! GCGAATTTAGTGCTGCTAAA+AGG - chr5.4:67794053-67794072 None:intergenic 40.0%
! GGGTTTATTGGTTGTACTCA+AGG + chr5.4:67792535-67792554 MS.gene070498:CDS 40.0%
! TTGCAAGAAATTGAAGGTGC+TGG + chr5.4:67789874-67789893 MS.gene070498:CDS 40.0%
!! AGATTGGCCTTTCCATGTAA+AGG - chr5.4:67794081-67794100 None:intergenic 40.0%
!! ATGAGCTACTTAGTGGGTTA+TGG + chr5.4:67792448-67792467 MS.gene070498:CDS 40.0%
!! GAATTGTCTTAGGTTGGTGA+TGG + chr5.4:67790074-67790093 MS.gene070498:intron 40.0%
!! TGAGCTACTTAGTGGGTTAT+GGG + chr5.4:67792449-67792468 MS.gene070498:CDS 40.0%
!! TGCTATTTCTAGCGAGAGAT+AGG + chr5.4:67791672-67791691 MS.gene070498:intron 40.0%
!! TGGGAGAAATTGGCTTTGAA+TGG + chr5.4:67793410-67793429 MS.gene070498:intron 40.0%
!!! ATTTTGAAGCACAGCGTTCA+GGG + chr5.4:67789586-67789605 MS.gene070498:CDS 40.0%
!!! CCTAACCCTAATGTTTTGGT+TGG + chr5.4:67792586-67792605 MS.gene070498:CDS 40.0%
!!! CTCTATGATGGACCCTTTTA+GGG - chr5.4:67792483-67792502 None:intergenic 40.0%
!!! TATTTTGAAGCACAGCGTTC+AGG + chr5.4:67789585-67789604 MS.gene070498:CDS 40.0%
AACTCACACAGGGGCAATTT+CGG + chr5.4:67793573-67793592 MS.gene070498:intron 45.0%
AATCCTGGTTCAGATCTTGC+TGG + chr5.4:67790173-67790192 MS.gene070498:CDS 45.0%
AATGTGGAAAGAACTCCAGC+TGG + chr5.4:67792232-67792251 MS.gene070498:CDS 45.0%
ACCTCTGCCCACAAAACATT+TGG - chr5.4:67789967-67789986 None:intergenic 45.0%
AGCTGGAGTTCTTTCCACAT+TGG - chr5.4:67792233-67792252 None:intergenic 45.0%
AGCTGGGATGTCAAATATGC+AGG + chr5.4:67790845-67790864 MS.gene070498:CDS 45.0%
AGTCACATCTCCGTGTATTG+TGG + chr5.4:67791765-67791784 MS.gene070498:intron 45.0%
ATCCCAGCTGAACTCTGTTA+TGG - chr5.4:67790834-67790853 None:intergenic 45.0%
ATGGGCCTAGTTACCCTAAA+AGG + chr5.4:67792467-67792486 MS.gene070498:CDS 45.0%
CAACGCTTGAATGCATTCGA+TGG + chr5.4:67794201-67794220 MS.gene070498:CDS 45.0%
CATCGAATGCATTCAAGCGT+TGG - chr5.4:67794203-67794222 None:intergenic 45.0%
CCTAAAAGGGTCCATCATAG+AGG + chr5.4:67792481-67792500 MS.gene070498:CDS 45.0%
CCTAATGTTGGAGAACCAAG+AGG + chr5.4:67791587-67791606 MS.gene070498:intron 45.0%
CTTGATGTTGTCATGTCCTC+TGG - chr5.4:67790128-67790147 None:intergenic 45.0%
GCTGGCAAGTGTTTATTGCA+TGG + chr5.4:67791718-67791737 MS.gene070498:intron 45.0%
GTCCATAACAGAGTTCAGCT+GGG + chr5.4:67790829-67790848 MS.gene070498:CDS 45.0%
GTTGGAGAACCAAGAGGATA+TGG + chr5.4:67791593-67791612 MS.gene070498:intron 45.0%
GTTTGACGCCAACAAGATGT+TGG - chr5.4:67790376-67790395 None:intergenic 45.0%
TAAACACTTGCCAGCTGTGT+CGG - chr5.4:67791713-67791732 None:intergenic 45.0%
TCAAGGTAGGTTCTTCGTGT+TGG - chr5.4:67794228-67794247 None:intergenic 45.0%
TCTCCAACTCATTGCTTCTC+AGG + chr5.4:67790868-67790887 MS.gene070498:CDS 45.0%
TGATCGATCTACATCACCAC+GGG + chr5.4:67794245-67794264 MS.gene070498:CDS 45.0%
TGGGCCTAGTTACCCTAAAA+GGG + chr5.4:67792468-67792487 MS.gene070498:CDS 45.0%
TTGCAGGTCACAGAAAGAAG+AGG - chr5.4:67793732-67793751 None:intergenic 45.0%
TTTCTTTGGTCCATGTGGAG+TGG + chr5.4:67791313-67791332 MS.gene070498:intron 45.0%
! CCTCTTGGTTCTCCAACATT+AGG - chr5.4:67791590-67791609 None:intergenic 45.0%
! GCTAATAACTTTGGTGGCAC+TGG + chr5.4:67790803-67790822 MS.gene070498:CDS 45.0%
! GGGAGGGAGCAATTTTTGTT+GGG + chr5.4:67793606-67793625 MS.gene070498:intron 45.0%
! GTGGTGATGTAGATCGATCA+AGG - chr5.4:67794245-67794264 None:intergenic 45.0%
! TCCAAATGTTTTGTGGGCAG+AGG + chr5.4:67789963-67789982 MS.gene070498:CDS 45.0%
! TGGGAGGGAGCAATTTTTGT+TGG + chr5.4:67793605-67793624 MS.gene070498:intron 45.0%
! TGTAGGTGGATTTGGTTGGA+GGG + chr5.4:67789767-67789786 MS.gene070498:intron 45.0%
!! ATAACTTTGGTGGCACTGGT+TGG + chr5.4:67790807-67790826 MS.gene070498:CDS 45.0%
!! GGCTTTGAATGGCGTAAGAA+TGG + chr5.4:67793421-67793440 MS.gene070498:intron 45.0%
!! GTTGGAGGGTATTATGATGC+AGG + chr5.4:67789781-67789800 MS.gene070498:CDS 45.0%
!!! CCTCTATGATGGACCCTTTT+AGG - chr5.4:67792484-67792503 None:intergenic 45.0%
!!! GTTTTGGTTGGAGCTTTGGT+TGG + chr5.4:67792598-67792617 MS.gene070498:CDS 45.0%
!!! TGGACCCTTTTAGGGTAACT+AGG - chr5.4:67792475-67792494 None:intergenic 45.0%
!!! AATAAAATGTAATTTTAAAA+AGG + chr5.4:67791645-67791664 MS.gene070498:intron 5.0%
!!! ATAAGAAATTTAATATTTTT+AGG - chr5.4:67793322-67793341 None:intergenic 5.0%
!!! ATTTTATCATATAATTATTT+TGG + chr5.4:67791116-67791135 MS.gene070498:intron 5.0%
!!! TTTTATCATATAATTATTTT+GGG + chr5.4:67791117-67791136 MS.gene070498:intron 5.0%
AAACACTTGCCAGCTGTGTC+GGG - chr5.4:67791712-67791731 None:intergenic 50.0%
CTTACAATCAACGCGTCGCT+TGG + chr5.4:67789616-67789635 MS.gene070498:CDS 50.0%
GATCGATCTACATCACCACG+GGG + chr5.4:67794246-67794265 MS.gene070498:CDS 50.0%
GGTCCATAACAGAGTTCAGC+TGG + chr5.4:67790828-67790847 MS.gene070498:CDS 50.0%
TCGATACTGACACGACACGT+TGG + chr5.4:67790302-67790321 MS.gene070498:intron 50.0%
TCTCCAGCAAGATCTGAACC+AGG - chr5.4:67790179-67790198 None:intergenic 50.0%
! AGTTACTATGCGTCGGTGAG+TGG + chr5.4:67790695-67790714 MS.gene070498:CDS 50.0%
! GTGTAGGTGGATTTGGTTGG+AGG + chr5.4:67789766-67789785 MS.gene070498:intron 50.0%
! TGCAAAGCTAAAGCACCACC+AGG - chr5.4:67791529-67791548 None:intergenic 50.0%
! TGTGCTAGTGTTTTCAGCGG+TGG + chr5.4:67793875-67793894 MS.gene070498:intron 50.0%
! TTGGTTGGAGCTTTGGTTGG+TGG + chr5.4:67792601-67792620 MS.gene070498:CDS 50.0%
!! CAAGCGACGCGTTGATTGTA+AGG - chr5.4:67789618-67789637 None:intergenic 50.0%
!! CTTTGGTTGGTGGTCCTGAT+TGG + chr5.4:67792611-67792630 MS.gene070498:CDS 50.0%
!!! GAATTTTGAGGTTCTCCCCG+TGG - chr5.4:67794264-67794283 None:intergenic 50.0%
TGGAGAGACAGCAGCAGCTA+TGG + chr5.4:67790193-67790212 MS.gene070498:CDS 55.0%
! AGTTGTTATGGGCTGCCACG+TGG + chr5.4:67790729-67790748 MS.gene070498:CDS 55.0%
! CGAGATTTTCCCGACACAGC+TGG + chr5.4:67791700-67791719 MS.gene070498:intron 55.0%
! TGCGTCGGTGAGTGGATTCA+TGG + chr5.4:67790703-67790722 MS.gene070498:CDS 55.0%
!! GGCTGCCACGTGGCTTTATA+AGG + chr5.4:67790739-67790758 MS.gene070498:CDS 55.0%
!! GGTGGCCTTATAAAGCCACG+TGG - chr5.4:67790747-67790766 None:intergenic 55.0%
! AGCATGCACGTGCTGCTGCC+TGG + chr5.4:67791508-67791527 MS.gene070498:intron 65.0%
! ATGCACGTGCTGCTGCCTGG+TGG + chr5.4:67791511-67791530 MS.gene070498:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 67789462 67794290 67789462 ID=MS.gene070498
chr5.4 mRNA 67789462 67794290 67789462 ID=MS.gene070498.t1;Parent=MS.gene070498
chr5.4 exon 67789462 67789677 67789462 ID=MS.gene070498.t1.exon1;Parent=MS.gene070498.t1
chr5.4 CDS 67789462 67789677 67789462 ID=cds.MS.gene070498.t1;Parent=MS.gene070498.t1
chr5.4 exon 67789772 67789984 67789772 ID=MS.gene070498.t1.exon2;Parent=MS.gene070498.t1
chr5.4 CDS 67789772 67789984 67789772 ID=cds.MS.gene070498.t1;Parent=MS.gene070498.t1
chr5.4 exon 67790086 67790286 67790086 ID=MS.gene070498.t1.exon3;Parent=MS.gene070498.t1
chr5.4 CDS 67790086 67790286 67790086 ID=cds.MS.gene070498.t1;Parent=MS.gene070498.t1
chr5.4 exon 67790635 67790889 67790635 ID=MS.gene070498.t1.exon4;Parent=MS.gene070498.t1
chr5.4 CDS 67790635 67790889 67790635 ID=cds.MS.gene070498.t1;Parent=MS.gene070498.t1
chr5.4 exon 67792124 67792750 67792124 ID=MS.gene070498.t1.exon5;Parent=MS.gene070498.t1
chr5.4 CDS 67792124 67792750 67792124 ID=cds.MS.gene070498.t1;Parent=MS.gene070498.t1
chr5.4 exon 67794180 67794290 67794180 ID=MS.gene070498.t1.exon6;Parent=MS.gene070498.t1
chr5.4 CDS 67794180 67794290 67794180 ID=cds.MS.gene070498.t1;Parent=MS.gene070498.t1
Gene Sequence

>MS.gene070498

ATGGAGAAAAAGAAACACCATTTTCTCATGCAACATTGTTGTCTTTTCCTTTTCATCTTCACCATTCTTACGACTAACATTCAAGCTTTTGATTATGGTGATGCCCTCTCAAAAAGCCTCCTTTATTTTGAAGCACAGCGTTCAGGGAGATTACCTTACAATCAACGCGTCGCTTGGCGCGATCATTCTGCTCTCATTGATGGTCTAGAACAAGGGGTTAGCTCAATTTGCATTAACATATCAAATTTTGTTATTTAATTTGAAGTTAAAAATTAAAGTTTTATTTTTCTATGTACATGTTATTGTGTAGGTGGATTTGGTTGGAGGGTATTATGATGCAGGTGATCATGTAAAATTTGGTTTACCAATGGCATTTACTGTGACAATGCTTTCATGGGGTGCTATAGAATATTTGCAAGAAATTGAAGGTGCTGGTGAATTACAACACACAATGGAAGCAATTAAATGGGGCACTGATTATTTTATCAAAGCTCACACTAGTCCAAATGTTTTGTGGGCAGAGGTAATTCAATTTCAATATCCAATTAATCAATTCCACTTCTTTAATTTTGTTACATTGATTATGAAGTTGATTAATTAAGATTTTTAATTGAATTGTCTTAGGTTGGTGATGGTGACACTGATCATTATTGTTGGCAAAGACCAGAGGACATGACAACATCAAGAAGAGCATTCAAGATAGATGAAAACAATCCTGGTTCAGATCTTGCTGGAGAGACAGCAGCAGCTATGGCAGCTGCTTCCATTGTGTTTAAGAAAACAAATCCACATTACTCTCATTTACTTTTACACCATGCTCAACAGGTACTAAATCTCTAATCGATACTGACACGACACGTTGGCATCCATAGTAATTTAAGAAAATAGAATAACTTATGTTACTATATGTACCAACATCTTGTTGGCGTCAAACATTAAAACATGTTGGATTCTAAAACATGTTAGATTCTGAATACGCCTCAAAATTGAAGTGACAATATCGCTTACATTATTAGTAAATGTACGAATTTAATTTGATTTGACTAGGTACTAAAATTAATAATTGTTGCAACACCTTTTGTTTGAAAATATTAAGCATGTTTGATTTTGAAAATTATGTACTAATAAAGTTGATTAATTATTGAAACCAATATATGTTTTGTTTTTGTGTAGTTGTTTGAGTTTGGAGACAAGTATAGAGGAAAATATGATGCAAGTGTTGGAGTAGTGAAAAGTTACTATGCGTCGGTGAGTGGATTCATGGATGAGTTGTTATGGGCTGCCACGTGGCTTTATAAGGCCACCGACAAAGAAGAGTATTTAGATTATGTAATTAACAATGCTAATAACTTTGGTGGCACTGGTTGGTCCATAACAGAGTTCAGCTGGGATGTCAAATATGCAGGTCTCCAACTCATTGCTTCTCAGGTAAACTTTCTTAATTTAGTTTCCATTTTATCCAAAGTTTTTAAAAAATGGTTTGATACCATATTAAAATCTTTGATGTCATTGATGCAACTATAATATTGATTTGGATATCACTTGCAAACGTACCATAACCGTAATTGAAGTGACATCAAGCCATCACACACACTAAGTGATGAGAAGAAGAAAATTACAGATTCAAATTTGTGTCTCAATATACTAAATGTCTATTTTATCATATAATTATTTTGGGACGAATAAAATATTATATTAAAAAGGTAAAATGATACTTATTTTTGAAGAAAATCTTGTTAAAATCACACTTATTTTAGAAATATTCTTTAGATCTGTGAAGGTAATCTATAACCATACTCTTATCTGTTAAGTTCTTGGTGAGTGTGTGAGTGAGCTTTTTTTCCTCAAAATTTTCTTTGGTCCATGTGGAGTGGCATATTTCTATTCAACTTTATCCAGATTTGGCTTTACTAATTTGAAAACGATAGGTTAAATCTTACTCCATTATTTTTAAAATGTCATTCATGGAGTATGCATGAATTAAAGTATATAGGTGTATTATCTTTAGGTATCATAAAATGAAAAACTATTAAAAGTGTATACAAGAGCATGCACGTGCTGCTGCCTGGTGGTGCTTTAGCTTTGCATCATGTGTATAATTAAAGTGATGTTGCTTATGGTTGAGCCTAATGTTGGAGAACCAAGAGGATATGGAATGATATACTTTTAAATCAAATTTCAACAATAAAATGTAATTTTAAAAAGGAAAATGCTATTTCTAGCGAGAGATAGGCGTAGCGAGATTTTCCCGACACAGCTGGCAAGTGTTTATTGCATGGTTTATTGTTCACTTCCTATTTTTCAGTCACATCTCCGTGTATTGTGGTAAATAGTGCATTGTGATTGACTGCTCTTTATTCTTAAAGAAATCGTGATGTTTCTTTTCTAGAGATATAGCACTGCTCTTTTAAAAATGGTTGGAAGGAGACATCATTAAAAGTGATCGGTCAAATTCTTCAATAAAGATTAGTCATTGACAAAGCTAGTGGATATTTTGCACCAATAATAAGATAATCAAAGAACATGTAATTTGATCTAAAGAAATAAATTGAGTTGAATCAATAAAACTAAGTCAAAACATCATGTTCTTCACATGCTTGCTTTATTAGTATTAGAGAGTAGCAAAGTATTTACAATCTAACTAAGATGCCATTTTTTGCAGTTTTTAAACCAAGCAAAACACAAGAAACATAGTGATATACTTGACCAATATAGGTCAAAAGCAGAGTACTATATATGTTCATGTCTCAACAAAAACATCAATGGCACCAATGTGGAAAGAACTCCAGCTGGATTACTATATGTTAGACAATGGAACAACATGCAACATGTTTCAACAGCATCATTTTTACTAACAATCTACTCTGACTATCTCAAAAACACCAATCAAAAACTCACATGTCATGGAGGCATTGTTGACCATGAAGAAATTCTAAGTTTTGCAAAATCACAAGTTGATTACATTTTGGGCTCTAACCCTATGAACATGAGCTACTTAGTGGGTTATGGGCCTAGTTACCCTAAAAGGGTCCATCATAGAGGAGCATCAATTATGTCATATAAGGAGAATAAAGGGTTTATTGGTTGTACTCAAGGGTATGATAATTGGTACAGTAAGGAAGATCCTAACCCTAATGTTTTGGTTGGAGCTTTGGTTGGTGGTCCTGATTGGCAAGACAATTTTGAAGATAAAAGGAACAATTTTATGCAAACTGAGGCTTGCACATATAATACTGCCCCTTTAGTAGCTCTTTTTGCAAAGTTCTTGCATATTGAAGATAATAAGATGGTATATGATTGTAATTCACTTTTGGTTGCTTCCTTTAAATAAATAAATATATAAAGTAAAAGAAAATTTAATACTAGTATTATTATATGTTTCTTGTAAGCCAAATTAACATTTTTATCATTCTTGATTATGAGTGATTTGTAGTACAATAGAGATTTTACAATCAAAGATGCTCTTTATTATGTCTCAAAAAAAATTGAGAGATTTGTTATTATAAATTTTGGGATTATATAAAAGATAAATACGCACATTCCTATAACTCTATTAGCGTCTCCAAGTTTATTCATTTCAAATTTTGACCTCAACTCTAATTTGAGCCTTTGAATTTCTTTCTTTCTTGAGCTTGCTAGAGTGCAACTTTCAAATACCTAGAGTGCAACTTTCAATCAACTTAAAATCAAACAGTTTCAAATACCTAAAACTACCACATTTCACTCTAAACTTAAACAGTTTCAAATACCTAAAACTACCACATTTCACTCTAAACAACATCTAAAATACAGTTCATAACTTAATTCATCACTAACAATTATAAAAGCTAACATGCAAGCAAAATTTATAAAAAAAACCTAAAAATATTAAATTTCTTATTAAAAAATTCAAAATTTTCAAACAAAAAAATGCAATGAAGTAGGATAATCATCACTTACTTGATATTGTGGGAGAAATTGGCTTTGAATGGCGTAAGAATGGTGAAAATAGCACTTGGAGGAGAAAATTTCGTAATTTGAGAAGTTGGAAAAATGAAGGAACTGTGTTTCTATTTTGTTGATAAATGACTTAACTCACGCAGTCACGCAGAGTACATAACTAGTGTGATTTAACTCACACAGGGGCAATTTCGGAATTTCAGTTGGGAGGGAGCAATTTTTGTTGGGTAAAGAGCAGAATTCTAGTTATTTTGCTGCGATCAATCAATCCACACTTCATCTTCTTTTTCATTTCACTTTCTGCTCCTGCTTCATTTCACTTTCTGCTCCTCTTCTTTCTGTGACCTGCAACACTTATACCTCACTTCTTTTTCTTCCATTTTTCACTTCTTTATCTTTGTGAGAGCATTAGTGGTTTGCAAGTGCTAGTGTTGCAATGTCTCCATTTATTCAAAAAGTTAACTTATTATTATGTGTGCTAGTGTTTTCAGCGGTGGATAATATTGTTGGAGTTCATGTGAATATTGTCAATTCTTTAGAAGGCAATTTAGACTTATCTCTTCATTGCTATTATAATCATGATGATCTCGGAAATCATCTTCTTCATCATGGTGGTAACTTTGGTTTTAGTTTTCGTCCTAAACAAATTCCTTTTAGCAGCACTAAATTCGCATGTACCTTTACATGGAAAGGCCAATCTCATAAGTTTAATATATACCAAATTGGTGATTTGCGTACTACTGAATGTGACGATTGCAATTGGTTTATATTCAAATCAGGACCATGTAGAAAATATGGACCAACGCTTGAATGCATTCGATGGACCAACACGAAGAACCTACCTTGATCGATCTACATCACCACGGGGAGAACCTCAAAATTCTCGTTGA
Protein sequence

>MS.gene070498.t1

MEKKKHHFLMQHCCLFLFIFTILTTNIQAFDYGDALSKSLLYFEAQRSGRLPYNQRVAWRDHSALIDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWGAIEYLQEIEGAGELQHTMEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAFKIDENNPGSDLAGETAAAMAAASIVFKKTNPHYSHLLLHHAQQLFEFGDKYRGKYDASVGVVKSYYASVSGFMDELLWAATWLYKATDKEEYLDYVINNANNFGGTGWSITEFSWDVKYAGLQLIASQFLNQAKHKKHSDILDQYRSKAEYYICSCLNKNINGTNVERTPAGLLYVRQWNNMQHVSTASFLLTIYSDYLKNTNQKLTCHGGIVDHEEILSFAKSQVDYILGSNPMNMSYLVGYGPSYPKRVHHRGASIMSYKENKGFIGCTQGYDNWYSKEDPNPNVLVGALVGGPDWQDNFEDKRNNFMQTEACTYNTAPLVALFAKFLHIEDNKMDHVENMDQRLNAFDGPTRRTYLDRSTSPRGEPQNSR