Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026232.t1 | XP_013466866.1 | 96.3 | 465 | 17 | 0 | 1 | 465 | 17 | 481 | 3.60E-267 | 930.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026232.t1 | O64890 | 63.1 | 464 | 169 | 2 | 1 | 463 | 25 | 487 | 2.2e-172 | 606.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026232.t1 | A0A072VGL9 | 96.3 | 465 | 17 | 0 | 1 | 465 | 17 | 481 | 2.6e-267 | 930.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026232.t1 | MTR_1g037340 | 96.344 | 465 | 17 | 0 | 1 | 465 | 17 | 481 | 0.0 | 938 |
| MS.gene026232.t1 | MTR_8g099410 | 54.741 | 464 | 203 | 4 | 9 | 465 | 28 | 491 | 1.76e-180 | 515 |
| MS.gene026232.t1 | MTR_8g099410 | 54.741 | 464 | 203 | 4 | 9 | 465 | 28 | 491 | 7.17e-179 | 515 |
| MS.gene026232.t1 | MTR_4g074960 | 53.978 | 465 | 206 | 5 | 9 | 465 | 28 | 492 | 1.99e-173 | 501 |
| MS.gene026232.t1 | MTR_5g085730 | 51.173 | 469 | 220 | 5 | 4 | 463 | 26 | 494 | 5.25e-173 | 496 |
| MS.gene026232.t1 | MTR_3g080190 | 51.078 | 464 | 218 | 5 | 9 | 463 | 40 | 503 | 5.07e-170 | 489 |
| MS.gene026232.t1 | MTR_5g093590 | 50.964 | 467 | 219 | 6 | 9 | 465 | 34 | 500 | 7.61e-165 | 474 |
| MS.gene026232.t1 | MTR_3g080810 | 48.387 | 465 | 226 | 8 | 9 | 465 | 35 | 493 | 3.01e-147 | 430 |
| MS.gene026232.t1 | MTR_8g104820 | 48.626 | 473 | 221 | 9 | 6 | 465 | 27 | 490 | 8.59e-144 | 421 |
| MS.gene026232.t1 | MTR_3g117500 | 47.992 | 473 | 230 | 9 | 3 | 465 | 18 | 484 | 1.48e-142 | 417 |
| MS.gene026232.t1 | MTR_5g009970 | 46.868 | 463 | 230 | 7 | 9 | 465 | 41 | 493 | 6.00e-142 | 416 |
| MS.gene026232.t1 | MTR_5g010000 | 47.609 | 460 | 231 | 5 | 9 | 465 | 40 | 492 | 6.76e-142 | 416 |
| MS.gene026232.t1 | MTR_4g035930 | 46.055 | 469 | 241 | 7 | 1 | 465 | 7 | 467 | 2.05e-140 | 411 |
| MS.gene026232.t1 | MTR_3g010330 | 47.761 | 469 | 233 | 8 | 3 | 465 | 18 | 480 | 4.64e-139 | 408 |
| MS.gene026232.t1 | MTR_4g035955 | 46.695 | 469 | 237 | 8 | 1 | 465 | 7 | 466 | 3.46e-138 | 405 |
| MS.gene026232.t1 | MTR_3g105230 | 44.743 | 447 | 234 | 8 | 9 | 452 | 30 | 466 | 8.43e-131 | 387 |
| MS.gene026232.t1 | MTR_1g088190 | 46.497 | 471 | 219 | 9 | 4 | 466 | 34 | 479 | 1.92e-130 | 386 |
| MS.gene026232.t1 | MTR_4g035975 | 45.011 | 471 | 237 | 9 | 9 | 465 | 27 | 489 | 6.91e-127 | 377 |
| MS.gene026232.t1 | MTR_3g113720 | 43.710 | 469 | 243 | 10 | 10 | 465 | 58 | 518 | 1.50e-124 | 373 |
| MS.gene026232.t1 | MTR_3g023740 | 44.685 | 461 | 242 | 8 | 9 | 466 | 30 | 480 | 1.64e-124 | 371 |
| MS.gene026232.t1 | MTR_5g009970 | 45.131 | 421 | 215 | 7 | 51 | 465 | 9 | 419 | 1.10e-120 | 359 |
| MS.gene026232.t1 | MTR_8g075990 | 42.735 | 468 | 249 | 9 | 10 | 465 | 64 | 524 | 9.95e-115 | 348 |
| MS.gene026232.t1 | MTR_5g009970 | 43.781 | 402 | 210 | 7 | 70 | 465 | 1 | 392 | 8.37e-109 | 328 |
| MS.gene026232.t1 | MTR_2g028480 | 40.650 | 492 | 244 | 14 | 9 | 465 | 111 | 589 | 5.47e-91 | 289 |
| MS.gene026232.t1 | MTR_3g090540 | 36.511 | 493 | 273 | 16 | 3 | 465 | 101 | 583 | 1.42e-86 | 277 |
| MS.gene026232.t1 | MTR_3g082440 | 38.193 | 487 | 260 | 16 | 9 | 465 | 116 | 591 | 1.44e-83 | 270 |
| MS.gene026232.t1 | MTR_5g009970 | 45.210 | 334 | 167 | 7 | 138 | 465 | 1 | 324 | 1.64e-81 | 255 |
| MS.gene026232.t1 | MTR_1g037320 | 80.000 | 160 | 32 | 0 | 70 | 229 | 1 | 160 | 1.30e-79 | 249 |
| MS.gene026232.t1 | MTR_1g037320 | 77.419 | 124 | 28 | 0 | 340 | 463 | 166 | 289 | 3.68e-65 | 212 |
| MS.gene026232.t1 | MTR_1g088190 | 46.815 | 314 | 136 | 7 | 4 | 310 | 34 | 323 | 3.09e-75 | 239 |
| MS.gene026232.t1 | MTR_4g047570 | 71.681 | 113 | 12 | 2 | 252 | 363 | 1 | 94 | 1.47e-43 | 149 |
| MS.gene026232.t1 | MTR_7g108925 | 43.452 | 168 | 92 | 3 | 301 | 466 | 33 | 199 | 1.74e-41 | 147 |
| MS.gene026232.t1 | MTR_0393s0050 | 46.377 | 138 | 72 | 2 | 310 | 445 | 19 | 156 | 1.29e-35 | 130 |
| MS.gene026232.t1 | MTR_4g128810 | 28.897 | 263 | 155 | 7 | 205 | 465 | 101 | 333 | 1.04e-20 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026232.t1 | AT2G44570 | 63.913 | 460 | 164 | 2 | 6 | 463 | 30 | 489 | 0.0 | 598 |
| MS.gene026232.t1 | AT2G44550 | 62.876 | 466 | 171 | 2 | 1 | 465 | 25 | 489 | 0.0 | 591 |
| MS.gene026232.t1 | AT2G44540 | 61.638 | 464 | 177 | 1 | 1 | 463 | 25 | 488 | 0.0 | 582 |
| MS.gene026232.t1 | AT2G44560 | 62.284 | 464 | 174 | 1 | 1 | 463 | 25 | 488 | 0.0 | 570 |
| MS.gene026232.t1 | AT1G64390 | 55.603 | 464 | 199 | 4 | 9 | 465 | 25 | 488 | 0.0 | 525 |
| MS.gene026232.t1 | AT4G11050 | 54.915 | 468 | 204 | 4 | 5 | 465 | 22 | 489 | 0.0 | 520 |
| MS.gene026232.t1 | AT4G11050 | 54.915 | 468 | 204 | 4 | 5 | 465 | 22 | 489 | 0.0 | 520 |
| MS.gene026232.t1 | AT4G11050 | 54.915 | 468 | 204 | 4 | 5 | 465 | 22 | 489 | 0.0 | 518 |
| MS.gene026232.t1 | AT2G32990 | 50.746 | 469 | 222 | 5 | 4 | 463 | 34 | 502 | 7.17e-169 | 486 |
| MS.gene026232.t1 | AT2G44570 | 60.695 | 374 | 146 | 1 | 6 | 378 | 30 | 403 | 9.37e-160 | 458 |
| MS.gene026232.t1 | AT1G02800 | 50.746 | 469 | 218 | 7 | 3 | 465 | 37 | 498 | 1.54e-154 | 448 |
| MS.gene026232.t1 | AT1G48930 | 50.968 | 465 | 215 | 5 | 9 | 463 | 30 | 491 | 1.59e-154 | 453 |
| MS.gene026232.t1 | AT1G23210 | 50.000 | 470 | 216 | 8 | 6 | 465 | 25 | 485 | 5.80e-150 | 436 |
| MS.gene026232.t1 | AT1G70710 | 49.574 | 470 | 218 | 8 | 6 | 465 | 25 | 485 | 9.68e-146 | 426 |
| MS.gene026232.t1 | AT4G02290 | 49.145 | 468 | 225 | 8 | 5 | 465 | 48 | 509 | 7.69e-145 | 424 |
| MS.gene026232.t1 | AT1G71380 | 47.957 | 465 | 230 | 8 | 6 | 465 | 21 | 478 | 1.52e-139 | 409 |
| MS.gene026232.t1 | AT4G23560 | 47.752 | 467 | 233 | 6 | 2 | 465 | 16 | 474 | 1.93e-139 | 409 |
| MS.gene026232.t1 | AT4G09740 | 47.323 | 467 | 235 | 6 | 2 | 465 | 16 | 474 | 3.79e-137 | 403 |
| MS.gene026232.t1 | AT4G39010 | 47.021 | 470 | 228 | 11 | 9 | 465 | 29 | 490 | 2.87e-136 | 402 |
| MS.gene026232.t1 | AT3G43860 | 46.822 | 472 | 235 | 8 | 2 | 466 | 22 | 484 | 7.82e-136 | 400 |
| MS.gene026232.t1 | AT3G43860 | 46.822 | 472 | 235 | 8 | 2 | 466 | 22 | 484 | 7.82e-136 | 400 |
| MS.gene026232.t1 | AT1G22880 | 46.781 | 466 | 236 | 8 | 6 | 466 | 21 | 479 | 7.83e-136 | 400 |
| MS.gene026232.t1 | AT1G19940 | 46.957 | 460 | 229 | 9 | 9 | 460 | 48 | 500 | 2.46e-133 | 395 |
| MS.gene026232.t1 | AT1G19940 | 46.957 | 460 | 229 | 9 | 9 | 460 | 48 | 500 | 2.46e-133 | 395 |
| MS.gene026232.t1 | AT1G75680 | 45.111 | 450 | 234 | 8 | 10 | 452 | 58 | 501 | 3.36e-121 | 364 |
| MS.gene026232.t1 | AT4G39000 | 45.648 | 471 | 233 | 12 | 9 | 465 | 25 | 486 | 7.34e-121 | 362 |
| MS.gene026232.t1 | AT4G38990 | 45.625 | 480 | 225 | 15 | 9 | 465 | 23 | 489 | 3.72e-120 | 360 |
| MS.gene026232.t1 | AT4G02290 | 46.040 | 404 | 205 | 8 | 70 | 466 | 1 | 398 | 1.45e-110 | 333 |
| MS.gene026232.t1 | AT1G22880 | 44.527 | 402 | 211 | 8 | 70 | 466 | 1 | 395 | 9.99e-109 | 328 |
| MS.gene026232.t1 | AT4G39010 | 45.257 | 369 | 177 | 10 | 9 | 362 | 29 | 387 | 6.37e-99 | 302 |
| MS.gene026232.t1 | AT1G19940 | 46.133 | 362 | 186 | 6 | 9 | 363 | 48 | 407 | 8.98e-99 | 303 |
| MS.gene026232.t1 | AT5G49720 | 39.837 | 492 | 248 | 17 | 9 | 465 | 108 | 586 | 3.78e-84 | 271 |
| MS.gene026232.t1 | AT1G22880 | 48.544 | 309 | 150 | 5 | 6 | 311 | 21 | 323 | 9.88e-83 | 259 |
| MS.gene026232.t1 | AT4G24260 | 39.228 | 492 | 251 | 16 | 9 | 465 | 108 | 586 | 1.31e-82 | 267 |
| MS.gene026232.t1 | AT1G65610 | 37.500 | 488 | 261 | 16 | 9 | 465 | 116 | 590 | 4.99e-81 | 263 |
| MS.gene026232.t1 | AT4G38990 | 44.789 | 355 | 161 | 10 | 1 | 347 | 15 | 342 | 1.09e-80 | 254 |
| MS.gene026232.t1 | AT4G24260 | 39.118 | 363 | 180 | 13 | 9 | 338 | 108 | 462 | 2.79e-50 | 178 |
| MS.gene026232.t1 | AT4G24260 | 42.561 | 289 | 136 | 9 | 9 | 271 | 108 | 392 | 5.41e-49 | 174 |
Find 99 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGGAGTCTTCTGGTATT+TGG | 0.150871 | 1.1:-21913672 | MS.gene026232:CDS |
| ATTGCTCCATCCAATGTATT+AGG | 0.167009 | 1.1:+21912840 | None:intergenic |
| ATGCATTAGCAGCCATAAAA+TGG | 0.203841 | 1.1:-21915032 | MS.gene026232:CDS |
| TGCTGAAACTGCTGCTGCTT+TGG | 0.209306 | 1.1:-21914848 | MS.gene026232:CDS |
| ACCATATAACTCATTTGTTT+TGG | 0.252912 | 1.1:+21912993 | None:intergenic |
| CTGTAGTTGGCTCTCCTAAT+TGG | 0.258505 | 1.1:+21912769 | None:intergenic |
| TTTATAGGTGGACTTCATAT+TGG | 0.266572 | 1.1:-21913024 | MS.gene026232:intron |
| AATAGGAATGATTTCCAATT+AGG | 0.285802 | 1.1:-21912783 | MS.gene026232:CDS |
| AGTGGAGTCTTCTGGTATTT+GGG | 0.295567 | 1.1:-21913671 | MS.gene026232:CDS |
| TGTTGCATGAACTAGCATTT+TGG | 0.307097 | 1.1:+21914780 | None:intergenic |
| GTTGGTGTTCTTGCTTATCT+AGG | 0.309346 | 1.1:-21912729 | MS.gene026232:CDS |
| CAACACCTAGGAATTCTTAT+AGG | 0.310428 | 1.1:-21914903 | MS.gene026232:CDS |
| GATGGGGCAGTGGAGTCTTC+TGG | 0.317246 | 1.1:-21913679 | MS.gene026232:CDS |
| TCCAAAACAAATGAGTTATA+TGG | 0.317497 | 1.1:-21912994 | MS.gene026232:CDS |
| TTGCTCCATCCAATGTATTA+GGG | 0.330211 | 1.1:+21912841 | None:intergenic |
| ACAAACAGGATGAATTACTA+TGG | 0.338358 | 1.1:-21913961 | MS.gene026232:intron |
| ATATTCCAGCAGCGGATATA+AGG | 0.356670 | 1.1:-21914314 | MS.gene026232:intron |
| CCATCCAATGTATTAGGGTT+TGG | 0.362477 | 1.1:+21912846 | None:intergenic |
| ATTTCTCCATACAAAACATT+TGG | 0.377809 | 1.1:+21914976 | None:intergenic |
| TTATAGGTGGACTTCATATT+GGG | 0.379942 | 1.1:-21913023 | MS.gene026232:intron |
| AAACACCAGGAGGTTTGTTA+TGG | 0.384236 | 1.1:-21913579 | MS.gene026232:CDS |
| AATGTTGCTTGTGCTGATTA+TGG | 0.385786 | 1.1:-21915769 | MS.gene026232:CDS |
| CTTAAAGATGGCCAAGATGC+TGG | 0.392573 | 1.1:-21915652 | MS.gene026232:CDS |
| TGCATTAGCAGCCATAAAAT+GGG | 0.401006 | 1.1:-21915031 | MS.gene026232:CDS |
| GTGCAAGAACAATGTTTAGT+TGG | 0.403821 | 1.1:-21913862 | MS.gene026232:CDS |
| AGTTGGGATGACAAGTATCT+TGG | 0.409837 | 1.1:-21913845 | MS.gene026232:CDS |
| GTTTCTGTTGCACCTTTAGT+TGG | 0.414736 | 1.1:-21912747 | MS.gene026232:CDS |
| GTTTGTTATGGTTTCAGCCA+TGG | 0.423349 | 1.1:-21913567 | MS.gene026232:CDS |
| TGCAAGAACAATGTTTAGTT+GGG | 0.447959 | 1.1:-21913861 | MS.gene026232:CDS |
| TTTGTTATGGTTTCAGCCAT+GGG | 0.452840 | 1.1:-21913566 | MS.gene026232:CDS |
| CTCCATGTTACTCTCTGGTT+AGG | 0.455018 | 1.1:+21915688 | None:intergenic |
| CCCCTCTCCATGTTACTCTC+TGG | 0.456953 | 1.1:+21915683 | None:intergenic |
| CTCGATTACCTTGGAGGAGC+CGG | 0.462880 | 1.1:-21913896 | MS.gene026232:CDS |
| TACTATTGTGGTATAAGCCT+TGG | 0.463657 | 1.1:+21914356 | None:intergenic |
| CACATCTCTTGTTCAAGCTC+AGG | 0.464765 | 1.1:-21913428 | MS.gene026232:intron |
| CAACACCACTACTACATTGA+AGG | 0.467522 | 1.1:+21913467 | None:intergenic |
| TGCACCAAACCCTAATACAT+TGG | 0.468229 | 1.1:-21912850 | MS.gene026232:CDS |
| GCTGGAGACAATTTGAAGCT+AGG | 0.474008 | 1.1:-21915141 | MS.gene026232:CDS |
| AGTAATTTACCCCAGCATCT+TGG | 0.479746 | 1.1:+21915641 | None:intergenic |
| CTTGGAGGAGCCGGCGACAA+TGG | 0.487274 | 1.1:-21913887 | MS.gene026232:CDS |
| TTACAACAACAATGCTATCA+TGG | 0.493153 | 1.1:-21915104 | MS.gene026232:CDS |
| CAACATTGATGATCTGAGTC+AGG | 0.495400 | 1.1:+21914946 | None:intergenic |
| ATGAGTTATATGGTGGGGTA+TGG | 0.498004 | 1.1:-21912984 | MS.gene026232:CDS |
| AAATACCTCGATTACCTTGG+AGG | 0.498433 | 1.1:-21913902 | MS.gene026232:CDS |
| TCACCAGTGGGATGCAAAGA+TGG | 0.498520 | 1.1:-21912897 | MS.gene026232:CDS |
| CTAGGTGTTGACATATCCTC+TGG | 0.498608 | 1.1:+21914916 | None:intergenic |
| TTAAAGATGGCCAAGATGCT+GGG | 0.499862 | 1.1:-21915651 | MS.gene026232:CDS |
| GTTGGAGGATATTATGATGC+TGG | 0.501561 | 1.1:-21915159 | MS.gene026232:CDS |
| ACAAGAGATGTGAGATCAGA+AGG | 0.503193 | 1.1:+21913439 | None:intergenic |
| TGCACAAATTCTTGCTGCAA+AGG | 0.510148 | 1.1:-21913822 | MS.gene026232:intron |
| CCAAACCCTAATACATTGGA+TGG | 0.511682 | 1.1:-21912846 | MS.gene026232:CDS |
| CATGTTACTCTCTGGTTAGG+AGG | 0.516741 | 1.1:+21915691 | None:intergenic |
| CATTGTCGCCGGCTCCTCCA+AGG | 0.518707 | 1.1:+21913888 | None:intergenic |
| ATTGTTGTTGTAAATGCCAT+TGG | 0.519034 | 1.1:+21915114 | None:intergenic |
| CTGCTGGTGGGATACTATTG+TGG | 0.519945 | 1.1:+21914344 | None:intergenic |
| AGACAAATATTGAGAATAAG+TGG | 0.523131 | 1.1:+21913504 | None:intergenic |
| AGGATTGATGAACAACATCC+TGG | 0.527890 | 1.1:-21914883 | MS.gene026232:CDS |
| GTCAACAGATTGAAAAGCAA+TGG | 0.528440 | 1.1:+21914816 | None:intergenic |
| GATCACCTTATATCCGCTGC+TGG | 0.531376 | 1.1:+21914309 | None:intergenic |
| TCAATCCTATAAGAATTCCT+AGG | 0.537494 | 1.1:+21914898 | None:intergenic |
| CATCATAATATCCTCCAACT+AGG | 0.538036 | 1.1:+21915163 | None:intergenic |
| CATGTGCAGATTGACCTAGT+TGG | 0.539382 | 1.1:-21915177 | MS.gene026232:intron |
| CCTCTATGATGAATTTGTTG+TGG | 0.545265 | 1.1:+21912951 | None:intergenic |
| AAGCCATCTTTGCATCCCAC+TGG | 0.547694 | 1.1:+21912894 | None:intergenic |
| AAAACAAATGAGTTATATGG+TGG | 0.550740 | 1.1:-21912991 | MS.gene026232:CDS |
| AACACCACTACTACATTGAA+GGG | 0.556342 | 1.1:+21913468 | None:intergenic |
| TCAGCAGCAAGATCAGAGCC+AGG | 0.559234 | 1.1:+21914865 | None:intergenic |
| GGGGATTCTGCACTTAAAGA+TGG | 0.560127 | 1.1:-21915664 | MS.gene026232:CDS |
| CTGACTCAGATCATCAATGT+TGG | 0.570776 | 1.1:-21914945 | MS.gene026232:CDS |
| TAAGCAAGAACACCAACTAA+AGG | 0.577826 | 1.1:+21912735 | None:intergenic |
| AACAAATGAGTTATATGGTG+GGG | 0.577963 | 1.1:-21912989 | MS.gene026232:CDS |
| ACCAGAGAGTAACATGGAGA+GGG | 0.579071 | 1.1:-21915684 | MS.gene026232:CDS |
| TCTTGCACCTCCATTGTCGC+CGG | 0.579248 | 1.1:+21913877 | None:intergenic |
| GGTGCAACAGAAACTGTAGT+TGG | 0.581151 | 1.1:+21912756 | None:intergenic |
| GTGCAGATTGACCTAGTTGG+AGG | 0.584135 | 1.1:-21915174 | MS.gene026232:intron |
| ATAGAGTTCAAAGACCAACT+TGG | 0.584442 | 1.1:-21915075 | MS.gene026232:CDS |
| CCACAACAAATTCATCATAG+AGG | 0.584665 | 1.1:-21912951 | MS.gene026232:CDS |
| CAAACAGGATGAATTACTAT+GGG | 0.588140 | 1.1:-21913960 | MS.gene026232:intron |
| AAACAAATGAGTTATATGGT+GGG | 0.588315 | 1.1:-21912990 | MS.gene026232:CDS |
| AATTACTATGGGCAGCAGCA+TGG | 0.593166 | 1.1:-21913949 | MS.gene026232:CDS |
| TGAAACCATAACAAACCTCC+TGG | 0.599556 | 1.1:+21913574 | None:intergenic |
| GGAGGAGCCGGCGACAATGG+AGG | 0.601885 | 1.1:-21913884 | MS.gene026232:CDS |
| ACATATTGATTATTACCCCA+TGG | 0.605665 | 1.1:+21913550 | None:intergenic |
| GCTTCCCTTCAATGTAGTAG+TGG | 0.617577 | 1.1:-21913472 | MS.gene026232:CDS |
| AACCAGAGAGTAACATGGAG+AGG | 0.618242 | 1.1:-21915685 | MS.gene026232:CDS |
| CAAGAGATGTGAGATCAGAA+GGG | 0.623937 | 1.1:+21913440 | None:intergenic |
| CAAAACTTTCAGAAAACACC+AGG | 0.624764 | 1.1:-21913592 | MS.gene026232:CDS |
| TAAAGATGGCCAAGATGCTG+GGG | 0.633585 | 1.1:-21915650 | MS.gene026232:intron |
| AAACAAGATAGTTCACCAGT+GGG | 0.648114 | 1.1:-21912909 | MS.gene026232:CDS |
| GCAAAAGTATATTCCAGCAG+CGG | 0.651043 | 1.1:-21914322 | MS.gene026232:CDS |
| CAAACAAGATAGTTCACCAG+TGG | 0.655015 | 1.1:-21912910 | MS.gene026232:CDS |
| AACTTTCAGAAAACACCAGG+AGG | 0.662576 | 1.1:-21913589 | MS.gene026232:CDS |
| CGGCTCCTCCAAGGTAATCG+AGG | 0.662604 | 1.1:+21913897 | None:intergenic |
| TTGTTATGGTTTCAGCCATG+GGG | 0.671553 | 1.1:-21913565 | MS.gene026232:CDS |
| CTCCTAACCAGAGAGTAACA+TGG | 0.672461 | 1.1:-21915690 | MS.gene026232:CDS |
| GCATTAGCAGCCATAAAATG+GGG | 0.674675 | 1.1:-21915030 | MS.gene026232:CDS |
| CAGAGGATATGTCAACACCT+AGG | 0.678701 | 1.1:-21914915 | MS.gene026232:CDS |
| TCAATGTTGGCAAAGACCAG+AGG | 0.679190 | 1.1:-21914932 | MS.gene026232:CDS |
| CCAGAGAGTAACATGGAGAG+GGG | 0.683701 | 1.1:-21915683 | MS.gene026232:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGAAAAAAAATTAAATA+AGG | - | chr1.1:21914005-21914024 | MS.gene026232:intron | 10.0% |
| !!! | AGATTATTATATTTTTTGTT+TGG | - | chr1.1:21914072-21914091 | MS.gene026232:intron | 10.0% |
| !! | GAAAGGAAAAAAAATATTTA+AGG | - | chr1.1:21914436-21914455 | MS.gene026232:intron | 15.0% |
| !! | TTTGAATAAAATGTTTCTTA+TGG | + | chr1.1:21913293-21913312 | None:intergenic | 15.0% |
| !!! | AAAAAGTTTGTTATTTTTTG+AGG | - | chr1.1:21912769-21912788 | MS.gene026232:CDS | 15.0% |
| !!! | AAAAGTTTGTTATTTTTTGA+GGG | - | chr1.1:21912770-21912789 | MS.gene026232:CDS | 15.0% |
| !!! | AAACATTATATTAGTGTTTT+AGG | + | chr1.1:21914473-21914492 | None:intergenic | 15.0% |
| !!! | AACAATATTTTCAATATAGA+TGG | + | chr1.1:21914734-21914753 | None:intergenic | 15.0% |
| !!! | ATATTTTTTATTACTTTTGG+TGG | - | chr1.1:21913110-21913129 | MS.gene026232:intron | 15.0% |
| !!! | TAAATAGAAATTTTGTCAAT+TGG | - | chr1.1:21915191-21915210 | MS.gene026232:intron | 15.0% |
| !!! | TTCATAATTTGTTTAATAGA+TGG | + | chr1.1:21914247-21914266 | None:intergenic | 15.0% |
| !! | AACTTGAAAATAGATTATGA+TGG | + | chr1.1:21915110-21915129 | None:intergenic | 20.0% |
| !! | AATAAATTTCAAATCCCATA+AGG | + | chr1.1:21914519-21914538 | None:intergenic | 20.0% |
| !! | TAAAATGAAGGAAAATTCAA+AGG | + | chr1.1:21912911-21912930 | None:intergenic | 20.0% |
| !! | TGAAATTTATTTGTACAAAC+AGG | - | chr1.1:21914528-21914547 | MS.gene026232:intron | 20.0% |
| !! | TTCATGTGTTTAATGTTTAT+AGG | - | chr1.1:21915464-21915483 | MS.gene026232:intron | 20.0% |
| !!! | AAACGATATTCATTTTGAAA+TGG | - | chr1.1:21915416-21915435 | MS.gene026232:intron | 20.0% |
| !!! | AGATCAAAATGATGATTTTA+CGG | - | chr1.1:21915695-21915714 | MS.gene026232:CDS | 20.0% |
| !!! | AGTTTTACCATTTAAACTTA+AGG | - | chr1.1:21915126-21915145 | MS.gene026232:CDS | 20.0% |
| !!! | CATTTTCCTTAAAATTAATG+AGG | - | chr1.1:21915316-21915335 | MS.gene026232:intron | 20.0% |
| !!! | GAAAATTCAAAGGTATAAAA+AGG | + | chr1.1:21912901-21912920 | None:intergenic | 20.0% |
| !!! | TTCTAACCTCATTAATTTTA+AGG | + | chr1.1:21915325-21915344 | None:intergenic | 20.0% |
| ! | AAAACAAATGAGTTATATGG+TGG | - | chr1.1:21915512-21915531 | MS.gene026232:intron | 25.0% |
| ! | AAACAAATGAGTTATATGGT+GGG | - | chr1.1:21915513-21915532 | MS.gene026232:intron | 25.0% |
| ! | AATAGGAATGATTTCCAATT+AGG | - | chr1.1:21915720-21915739 | MS.gene026232:CDS | 25.0% |
| ! | AGACAAATATTGAGAATAAG+TGG | + | chr1.1:21915002-21915021 | None:intergenic | 25.0% |
| ! | ATGGAAATATAGAAGTTGAA+AGG | + | chr1.1:21914228-21914247 | None:intergenic | 25.0% |
| ! | ATGTGTTTAATGTTTATAGG+TGG | - | chr1.1:21915467-21915486 | MS.gene026232:intron | 25.0% |
| ! | ATTTCTCCATACAAAACATT+TGG | + | chr1.1:21913530-21913549 | None:intergenic | 25.0% |
| ! | TCACACATCATATAAACAAA+TGG | + | chr1.1:21913887-21913906 | None:intergenic | 25.0% |
| ! | TCCAAAACAAATGAGTTATA+TGG | - | chr1.1:21915509-21915528 | MS.gene026232:intron | 25.0% |
| !! | AATGTTTTGTATGGAGAAAT+TGG | - | chr1.1:21913530-21913549 | MS.gene026232:CDS | 25.0% |
| !! | ACCATATAACTCATTTGTTT+TGG | + | chr1.1:21915513-21915532 | None:intergenic | 25.0% |
| !! | ATGATGATTTTACGGATAAT+AGG | - | chr1.1:21915703-21915722 | MS.gene026232:CDS | 25.0% |
| !! | ATTTTCAATATAGATGGAAG+AGG | + | chr1.1:21914728-21914747 | None:intergenic | 25.0% |
| !! | GCATTTTCGTTATAAAATGA+AGG | + | chr1.1:21912923-21912942 | None:intergenic | 25.0% |
| !!! | ATTTTGATTGATGTTTGTCA+TGG | - | chr1.1:21914297-21914316 | MS.gene026232:intron | 25.0% |
| !!! | CTATTAGTCTTTGAATCATT+AGG | + | chr1.1:21914362-21914381 | None:intergenic | 25.0% |
| !!! | GTAAAATCATCATTTTGATC+TGG | + | chr1.1:21915696-21915715 | None:intergenic | 25.0% |
| !!! | TAATGTAGCTTGTTTTAGAT+GGG | - | chr1.1:21914807-21914826 | MS.gene026232:CDS | 25.0% |
| !!! | TTAATGTAGCTTGTTTTAGA+TGG | - | chr1.1:21914806-21914825 | MS.gene026232:CDS | 25.0% |
| AAAAAATACCTCGATTACCT+TGG | - | chr1.1:21914598-21914617 | MS.gene026232:intron | 30.0% | |
| AACAAATGAGTTATATGGTG+GGG | - | chr1.1:21915514-21915533 | MS.gene026232:intron | 30.0% | |
| ACAAACAGGATGAATTACTA+TGG | - | chr1.1:21914542-21914561 | MS.gene026232:intron | 30.0% | |
| AGAAACCTGATACATGATAA+AGG | + | chr1.1:21912973-21912992 | None:intergenic | 30.0% | |
| AGCATGACCTTAAGTTTAAA+TGG | + | chr1.1:21915136-21915155 | None:intergenic | 30.0% | |
| ATAACTATTGTGAGTTCGAA+AGG | - | chr1.1:21914419-21914438 | MS.gene026232:intron | 30.0% | |
| ATGAACCTTTATCATGTATC+AGG | - | chr1.1:21912965-21912984 | MS.gene026232:CDS | 30.0% | |
| CAAACAGGATGAATTACTAT+GGG | - | chr1.1:21914543-21914562 | MS.gene026232:intron | 30.0% | |
| CAAACTAAAACATAGAGCTT+TGG | - | chr1.1:21913056-21913075 | MS.gene026232:intron | 30.0% | |
| TCAATCCTATAAGAATTCCT+AGG | + | chr1.1:21913608-21913627 | None:intergenic | 30.0% | |
| TGCAAGAACAATGTTTAGTT+GGG | - | chr1.1:21914642-21914661 | MS.gene026232:intron | 30.0% | |
| TTACAACAACAATGCTATCA+TGG | - | chr1.1:21913399-21913418 | MS.gene026232:intron | 30.0% | |
| TTTGTCATGGTTAGAATGAT+CGG | - | chr1.1:21914310-21914329 | MS.gene026232:intron | 30.0% | |
| ! | ACATATTGATTATTACCCCA+TGG | + | chr1.1:21914956-21914975 | None:intergenic | 30.0% |
| ! | ATTGTTGTTGTAAATGCCAT+TGG | + | chr1.1:21913392-21913411 | None:intergenic | 30.0% |
| ! | CAACAACCAAATGTTTTGTA+TGG | - | chr1.1:21913521-21913540 | MS.gene026232:CDS | 30.0% |
| ! | GATTTTGCAAACAATAACCA+AGG | - | chr1.1:21914130-21914149 | MS.gene026232:intron | 30.0% |
| ! | TTAGTCTTTGAATCATTAGG+AGG | + | chr1.1:21914359-21914378 | None:intergenic | 30.0% |
| ! | TTATAGGTGGACTTCATATT+GGG | - | chr1.1:21915480-21915499 | MS.gene026232:intron | 30.0% |
| ! | TTTATAGGTGGACTTCATAT+TGG | - | chr1.1:21915479-21915498 | MS.gene026232:intron | 30.0% |
| !! | AAAACATAGAGCTTTGGTTT+TGG | - | chr1.1:21913062-21913081 | MS.gene026232:intron | 30.0% |
| !! | TGGTGTTTTCTGAAAGTTTT+GGG | + | chr1.1:21914912-21914931 | None:intergenic | 30.0% |
| !!! | AATGTAGCTTGTTTTAGATG+GGG | - | chr1.1:21914808-21914827 | MS.gene026232:CDS | 30.0% |
| !!! | ATTTTTTCAAGTTTGTAGCG+CGG | + | chr1.1:21914585-21914604 | None:intergenic | 30.0% |
| AAACAAGATAGTTCACCAGT+GGG | - | chr1.1:21915594-21915613 | MS.gene026232:intron | 35.0% | |
| AACACCACTACTACATTGAA+GGG | + | chr1.1:21915038-21915057 | None:intergenic | 35.0% | |
| AGACTAATAGAGATACCTTG+AGG | - | chr1.1:21914372-21914391 | MS.gene026232:CDS | 35.0% | |
| ATAACCTAGACGAACAAAGA+CGG | + | chr1.1:21913245-21913264 | None:intergenic | 35.0% | |
| ATAACGAAAATGCAGAAGAC+TGG | - | chr1.1:21912930-21912949 | MS.gene026232:CDS | 35.0% | |
| ATACCTTGAGGAACATATTG+TGG | - | chr1.1:21914384-21914403 | MS.gene026232:intron | 35.0% | |
| ATAGAGTTCAAAGACCAACT+TGG | - | chr1.1:21913428-21913447 | MS.gene026232:intron | 35.0% | |
| ATATAATCTCATACAGCCCT+AGG | + | chr1.1:21913001-21913020 | None:intergenic | 35.0% | |
| ATCAGGTTTCTAAGTTCCTA+GGG | - | chr1.1:21912982-21913001 | MS.gene026232:CDS | 35.0% | |
| ATGCATTAGCAGCCATAAAA+TGG | - | chr1.1:21913471-21913490 | MS.gene026232:CDS | 35.0% | |
| ATTGCTCCATCCAATGTATT+AGG | + | chr1.1:21915666-21915685 | None:intergenic | 35.0% | |
| CAAAACTTTCAGAAAACACC+AGG | - | chr1.1:21914911-21914930 | MS.gene026232:CDS | 35.0% | |
| CAACACCTAGGAATTCTTAT+AGG | - | chr1.1:21913600-21913619 | MS.gene026232:CDS | 35.0% | |
| CATCATAATATCCTCCAACT+AGG | + | chr1.1:21913343-21913362 | None:intergenic | 35.0% | |
| CCACAACAAATTCATCATAG+AGG | - | chr1.1:21915552-21915571 | MS.gene026232:intron | 35.0% | |
| GTCAACAGATTGAAAAGCAA+TGG | + | chr1.1:21913690-21913709 | None:intergenic | 35.0% | |
| GTGCAAGAACAATGTTTAGT+TGG | - | chr1.1:21914641-21914660 | MS.gene026232:intron | 35.0% | |
| TAAGCAAGAACACCAACTAA+AGG | + | chr1.1:21915771-21915790 | None:intergenic | 35.0% | |
| TACCTTGAGGAACATATTGT+GGG | - | chr1.1:21914385-21914404 | MS.gene026232:intron | 35.0% | |
| TACTATTGTGGTATAAGCCT+TGG | + | chr1.1:21914150-21914169 | None:intergenic | 35.0% | |
| TAGTTCATGCAACACAAGTA+TGG | - | chr1.1:21913732-21913751 | MS.gene026232:intron | 35.0% | |
| TATCAGGTTTCTAAGTTCCT+AGG | - | chr1.1:21912981-21913000 | MS.gene026232:CDS | 35.0% | |
| TGCATTAGCAGCCATAAAAT+GGG | - | chr1.1:21913472-21913491 | MS.gene026232:CDS | 35.0% | |
| TTGCTCCATCCAATGTATTA+GGG | + | chr1.1:21915665-21915684 | None:intergenic | 35.0% | |
| ! | AATATACTTTTGCTGCTGGT+GGG | + | chr1.1:21914174-21914193 | None:intergenic | 35.0% |
| ! | AGTTTTTCTGCCTTATAGCT+AGG | - | chr1.1:21915368-21915387 | MS.gene026232:intron | 35.0% |
| ! | GTTTTTCTGCCTTATAGCTA+GGG | - | chr1.1:21915369-21915388 | MS.gene026232:intron | 35.0% |
| ! | TGTTGCATGAACTAGCATTT+TGG | + | chr1.1:21913726-21913745 | None:intergenic | 35.0% |
| ! | TTTGTTATGGTTTCAGCCAT+GGG | - | chr1.1:21914937-21914956 | MS.gene026232:CDS | 35.0% |
| !! | AATGTTGCTTGTGCTGATTA+TGG | - | chr1.1:21912734-21912753 | MS.gene026232:CDS | 35.0% |
| !! | CCTCTATGATGAATTTGTTG+TGG | + | chr1.1:21915555-21915574 | None:intergenic | 35.0% |
| !! | CTGGTGTTTTCTGAAAGTTT+TGG | + | chr1.1:21914913-21914932 | None:intergenic | 35.0% |
| !! | GCAAAGATGGCTTTGAAAAA+TGG | - | chr1.1:21915619-21915638 | MS.gene026232:intron | 35.0% |
| !! | TTTGAAGCTAGGTTTTCCAA+TGG | - | chr1.1:21913373-21913392 | MS.gene026232:intron | 35.0% |
| !!! | GCTCATTCTTTTTTCCAAGT+TGG | + | chr1.1:21913445-21913464 | None:intergenic | 35.0% |
| AAACAAATGGTGTGTGAGTG+TGG | + | chr1.1:21913874-21913893 | None:intergenic | 40.0% | |
| AAAGACGCACTGTATATAGG+CGG | + | chr1.1:21913200-21913219 | None:intergenic | 40.0% | |
| AAATACCTCGATTACCTTGG+AGG | - | chr1.1:21914601-21914620 | MS.gene026232:intron | 40.0% | |
| AACCCACAATATGTTCCTCA+AGG | + | chr1.1:21914390-21914409 | None:intergenic | 40.0% | |
| AACTTTCAGAAAACACCAGG+AGG | - | chr1.1:21914914-21914933 | MS.gene026232:CDS | 40.0% | |
| ACAAGAGATGTGAGATCAGA+AGG | + | chr1.1:21915067-21915086 | None:intergenic | 40.0% | |
| ACACTTCCATTTGAGCCTTA+TGG | - | chr1.1:21914501-21914520 | MS.gene026232:intron | 40.0% | |
| AGGATTGATGAACAACATCC+TGG | - | chr1.1:21913620-21913639 | MS.gene026232:CDS | 40.0% | |
| AGTAATTTACCCCAGCATCT+TGG | + | chr1.1:21912865-21912884 | None:intergenic | 40.0% | |
| AGTGGAGTCTTCTGGTATTT+GGG | - | chr1.1:21914832-21914851 | MS.gene026232:CDS | 40.0% | |
| AGTTGGGATGACAAGTATCT+TGG | - | chr1.1:21914658-21914677 | MS.gene026232:intron | 40.0% | |
| ATATTCCAGCAGCGGATATA+AGG | - | chr1.1:21914189-21914208 | MS.gene026232:intron | 40.0% | |
| CAAACAAGATAGTTCACCAG+TGG | - | chr1.1:21915593-21915612 | MS.gene026232:intron | 40.0% | |
| CAAATCCCATAAGGCTCAAA+TGG | + | chr1.1:21914510-21914529 | None:intergenic | 40.0% | |
| CAACACCACTACTACATTGA+AGG | + | chr1.1:21915039-21915058 | None:intergenic | 40.0% | |
| CAAGAGATGTGAGATCAGAA+GGG | + | chr1.1:21915066-21915085 | None:intergenic | 40.0% | |
| CCAAACCCTAATACATTGGA+TGG | - | chr1.1:21915657-21915676 | MS.gene026232:CDS | 40.0% | |
| CCATCCAATGTATTAGGGTT+TGG | + | chr1.1:21915660-21915679 | None:intergenic | 40.0% | |
| CTGACTCAGATCATCAATGT+TGG | - | chr1.1:21913558-21913577 | MS.gene026232:CDS | 40.0% | |
| GATGCTTAACCATTGCCTTT+GGG | - | chr1.1:21915282-21915301 | MS.gene026232:intron | 40.0% | |
| GCAAAAGACGCACTGTATAT+AGG | + | chr1.1:21913203-21913222 | None:intergenic | 40.0% | |
| GCATTAGCAGCCATAAAATG+GGG | - | chr1.1:21913473-21913492 | MS.gene026232:CDS | 40.0% | |
| GTTGGAGGATATTATGATGC+TGG | - | chr1.1:21913344-21913363 | MS.gene026232:intron | 40.0% | |
| GTTTCTGTTGCACCTTTAGT+TGG | - | chr1.1:21915756-21915775 | MS.gene026232:CDS | 40.0% | |
| TAACCTAGACGAACAAAGAC+GGG | + | chr1.1:21913244-21913263 | None:intergenic | 40.0% | |
| TGAAACCATAACAAACCTCC+TGG | + | chr1.1:21914932-21914951 | None:intergenic | 40.0% | |
| TGATGCTTAACCATTGCCTT+TGG | - | chr1.1:21915281-21915300 | MS.gene026232:intron | 40.0% | |
| TGCACAAATTCTTGCTGCAA+AGG | - | chr1.1:21914681-21914700 | MS.gene026232:intron | 40.0% | |
| TGCACCAAACCCTAATACAT+TGG | - | chr1.1:21915653-21915672 | MS.gene026232:CDS | 40.0% | |
| TTAAAGATGGCCAAGATGCT+GGG | - | chr1.1:21912852-21912871 | MS.gene026232:CDS | 40.0% | |
| TTGTTATGGTTTCAGCCATG+GGG | - | chr1.1:21914938-21914957 | MS.gene026232:CDS | 40.0% | |
| ! | ATGAGTTATATGGTGGGGTA+TGG | - | chr1.1:21915519-21915538 | MS.gene026232:intron | 40.0% |
| ! | CAACATTGATGATCTGAGTC+AGG | + | chr1.1:21913560-21913579 | None:intergenic | 40.0% |
| ! | CACTTCCATTTGAGCCTTAT+GGG | - | chr1.1:21914502-21914521 | MS.gene026232:intron | 40.0% |
| ! | CTGGAATATACTTTTGCTGC+TGG | + | chr1.1:21914178-21914197 | None:intergenic | 40.0% |
| ! | GAATATACTTTTGCTGCTGG+TGG | + | chr1.1:21914175-21914194 | None:intergenic | 40.0% |
| ! | GCAAAAGTATATTCCAGCAG+CGG | - | chr1.1:21914181-21914200 | MS.gene026232:intron | 40.0% |
| ! | GTAGTCTGTTCCCCATTTTA+TGG | + | chr1.1:21913486-21913505 | None:intergenic | 40.0% |
| ! | GTTGGTGTTCTTGCTTATCT+AGG | - | chr1.1:21915774-21915793 | MS.gene026232:CDS | 40.0% |
| ! | TGCATGAACTAGCATTTTGG+AGG | + | chr1.1:21913723-21913742 | None:intergenic | 40.0% |
| !! | AAACACCAGGAGGTTTGTTA+TGG | - | chr1.1:21914924-21914943 | MS.gene026232:CDS | 40.0% |
| !! | GTTTGTTATGGTTTCAGCCA+TGG | - | chr1.1:21914936-21914955 | MS.gene026232:CDS | 40.0% |
| !! | TTACTTTTGGTGGTAGCCAT+CGG | - | chr1.1:21913120-21913139 | MS.gene026232:intron | 40.0% |
| !!! | TTTTTTGAGGGACAACGTTC+AGG | - | chr1.1:21912782-21912801 | MS.gene026232:CDS | 40.0% |
| AACCAGAGAGTAACATGGAG+AGG | - | chr1.1:21912818-21912837 | MS.gene026232:CDS | 45.0% | |
| AATGCTAACCAGTGTCCCAA+AGG | + | chr1.1:21915300-21915319 | None:intergenic | 45.0% | |
| AATTACTATGGGCAGCAGCA+TGG | - | chr1.1:21914554-21914573 | MS.gene026232:intron | 45.0% | |
| ACCAGAGAGTAACATGGAGA+GGG | - | chr1.1:21912819-21912838 | MS.gene026232:CDS | 45.0% | |
| CACATCTCTTGTTCAAGCTC+AGG | - | chr1.1:21915075-21915094 | MS.gene026232:CDS | 45.0% | |
| CAGAGGATATGTCAACACCT+AGG | - | chr1.1:21913588-21913607 | MS.gene026232:CDS | 45.0% | |
| CAGTGGAGTCTTCTGGTATT+TGG | - | chr1.1:21914831-21914850 | MS.gene026232:CDS | 45.0% | |
| CATGTGCAGATTGACCTAGT+TGG | - | chr1.1:21913326-21913345 | MS.gene026232:intron | 45.0% | |
| CATGTTACTCTCTGGTTAGG+AGG | + | chr1.1:21912815-21912834 | None:intergenic | 45.0% | |
| CTCCATGTTACTCTCTGGTT+AGG | + | chr1.1:21912818-21912837 | None:intergenic | 45.0% | |
| CTCCTAACCAGAGAGTAACA+TGG | - | chr1.1:21912813-21912832 | MS.gene026232:CDS | 45.0% | |
| CTTAAAGATGGCCAAGATGC+TGG | - | chr1.1:21912851-21912870 | MS.gene026232:CDS | 45.0% | |
| CTTAAGGTCATGCTAACCAG+TGG | - | chr1.1:21915142-21915161 | MS.gene026232:CDS | 45.0% | |
| GCTTCCCTTCAATGTAGTAG+TGG | - | chr1.1:21915031-21915050 | MS.gene026232:CDS | 45.0% | |
| GGGGATTCTGCACTTAAAGA+TGG | - | chr1.1:21912839-21912858 | MS.gene026232:CDS | 45.0% | |
| GGTGCAACAGAAACTGTAGT+TGG | + | chr1.1:21915750-21915769 | None:intergenic | 45.0% | |
| TAAAGACACCATCCAACCGA+TGG | + | chr1.1:21913139-21913158 | None:intergenic | 45.0% | |
| TAAAGATGGCCAAGATGCTG+GGG | - | chr1.1:21912853-21912872 | MS.gene026232:CDS | 45.0% | |
| TCAATGTTGGCAAAGACCAG+AGG | - | chr1.1:21913571-21913590 | MS.gene026232:CDS | 45.0% | |
| TGTGAGTGTGGTAAAGTTCG+TGG | + | chr1.1:21913862-21913881 | None:intergenic | 45.0% | |
| ! | CTGTAGTTGGCTCTCCTAAT+TGG | + | chr1.1:21915737-21915756 | None:intergenic | 45.0% |
| ! | GCTGGAGACAATTTGAAGCT+AGG | - | chr1.1:21913362-21913381 | MS.gene026232:intron | 45.0% |
| ! | TGAGCTTACCTCAGTTGGTA+CGG | - | chr1.1:21913791-21913810 | MS.gene026232:intron | 45.0% |
| !! | CTAGGTGTTGACATATCCTC+TGG | + | chr1.1:21913590-21913609 | None:intergenic | 45.0% |
| !!! | ATAATATTTTTTATTACTTT+TGG | - | chr1.1:21913107-21913126 | MS.gene026232:intron | 5.0% |
| AACCAGTGGCATCAGGGTAA+TGG | - | chr1.1:21915156-21915175 | MS.gene026232:CDS | 50.0% | |
| AACCAGTGTCCCAAAGGCAA+TGG | + | chr1.1:21915294-21915313 | None:intergenic | 50.0% | |
| AAGCCATCTTTGCATCCCAC+TGG | + | chr1.1:21915612-21915631 | None:intergenic | 50.0% | |
| CATGCTAACCAGTGGCATCA+GGG | - | chr1.1:21915150-21915169 | MS.gene026232:CDS | 50.0% | |
| CCAGAGAGTAACATGGAGAG+GGG | - | chr1.1:21912820-21912839 | MS.gene026232:CDS | 50.0% | |
| CCTCTCAAGCCCTAGCTATA+AGG | + | chr1.1:21915381-21915400 | None:intergenic | 50.0% | |
| CCTTATAGCTAGGGCTTGAG+AGG | - | chr1.1:21915378-21915397 | MS.gene026232:intron | 50.0% | |
| CTGCTGGTGGGATACTATTG+TGG | + | chr1.1:21914162-21914181 | None:intergenic | 50.0% | |
| CTTCGTGAGCTTACCTCAGT+TGG | - | chr1.1:21913786-21913805 | MS.gene026232:intron | 50.0% | |
| GATCACCTTATATCCGCTGC+TGG | + | chr1.1:21914197-21914216 | None:intergenic | 50.0% | |
| GTGCAGATTGACCTAGTTGG+AGG | - | chr1.1:21913329-21913348 | MS.gene026232:intron | 50.0% | |
| TCACCAGTGGGATGCAAAGA+TGG | - | chr1.1:21915606-21915625 | MS.gene026232:intron | 50.0% | |
| TCATGCTAACCAGTGGCATC+AGG | - | chr1.1:21915149-21915168 | MS.gene026232:CDS | 50.0% | |
| TGCATTGTCCGTACCAACTG+AGG | + | chr1.1:21913802-21913821 | None:intergenic | 50.0% | |
| TTGCCCGTCTTTGTTCGTCT+AGG | - | chr1.1:21913238-21913257 | MS.gene026232:intron | 50.0% | |
| ! | TGCTGAAACTGCTGCTGCTT+TGG | - | chr1.1:21913655-21913674 | MS.gene026232:CDS | 50.0% |
| ! | TGGCATCAGGGTAATGGTCA+AGG | - | chr1.1:21915162-21915181 | MS.gene026232:CDS | 50.0% |
| !! | AACCATTGCCTTTGGGACAC+TGG | - | chr1.1:21915289-21915308 | MS.gene026232:intron | 50.0% |
| !! | TTTTGGTGGTAGCCATCGGT+TGG | - | chr1.1:21913124-21913143 | MS.gene026232:intron | 50.0% |
| !!! | GCTTGTTTTAGATGGGGCAG+TGG | - | chr1.1:21914814-21914833 | MS.gene026232:CDS | 50.0% |
| CCCCTCTCCATGTTACTCTC+TGG | + | chr1.1:21912823-21912842 | None:intergenic | 55.0% | |
| CTCGATTACCTTGGAGGAGC+CGG | - | chr1.1:21914607-21914626 | MS.gene026232:intron | 55.0% | |
| GACCATTACCCTGATGCCAC+TGG | + | chr1.1:21915161-21915180 | None:intergenic | 55.0% | |
| TCAGCAGCAAGATCAGAGCC+AGG | + | chr1.1:21913641-21913660 | None:intergenic | 55.0% | |
| TCTTGCACCTCCATTGTCGC+CGG | + | chr1.1:21914629-21914648 | None:intergenic | 55.0% | |
| CGGCTCCTCCAAGGTAATCG+AGG | + | chr1.1:21914609-21914628 | None:intergenic | 60.0% | |
| GATGGGGCAGTGGAGTCTTC+TGG | - | chr1.1:21914824-21914843 | MS.gene026232:CDS | 60.0% | |
| ! | GGTGGTAGCCATCGGTTGGA+TGG | - | chr1.1:21913128-21913147 | MS.gene026232:intron | 60.0% |
| CTTGGAGGAGCCGGCGACAA+TGG | - | chr1.1:21914616-21914635 | MS.gene026232:intron | 65.0% | |
| !! | CATTGTCGCCGGCTCCTCCA+AGG | + | chr1.1:21914618-21914637 | None:intergenic | 65.0% |
| GGAGGAGCCGGCGACAATGG+AGG | - | chr1.1:21914619-21914638 | MS.gene026232:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 21912725 | 21915800 | 21912725 | ID=MS.gene026232 |
| chr1.1 | mRNA | 21912725 | 21915800 | 21912725 | ID=MS.gene026232.t1;Parent=MS.gene026232 |
| chr1.1 | exon | 21915651 | 21915800 | 21915651 | ID=MS.gene026232.t1.exon1;Parent=MS.gene026232.t1 |
| chr1.1 | CDS | 21915651 | 21915800 | 21915651 | ID=cds.MS.gene026232.t1;Parent=MS.gene026232.t1 |
| chr1.1 | exon | 21914777 | 21915190 | 21914777 | ID=MS.gene026232.t1.exon2;Parent=MS.gene026232.t1 |
| chr1.1 | CDS | 21914777 | 21915190 | 21914777 | ID=cds.MS.gene026232.t1;Parent=MS.gene026232.t1 |
| chr1.1 | exon | 21914315 | 21914401 | 21914315 | ID=MS.gene026232.t1.exon3;Parent=MS.gene026232.t1 |
| chr1.1 | CDS | 21914315 | 21914401 | 21914315 | ID=cds.MS.gene026232.t1;Parent=MS.gene026232.t1 |
| chr1.1 | exon | 21913823 | 21913975 | 21913823 | ID=MS.gene026232.t1.exon4;Parent=MS.gene026232.t1 |
| chr1.1 | CDS | 21913823 | 21913975 | 21913823 | ID=cds.MS.gene026232.t1;Parent=MS.gene026232.t1 |
| chr1.1 | exon | 21913429 | 21913710 | 21913429 | ID=MS.gene026232.t1.exon5;Parent=MS.gene026232.t1 |
| chr1.1 | CDS | 21913429 | 21913710 | 21913429 | ID=cds.MS.gene026232.t1;Parent=MS.gene026232.t1 |
| chr1.1 | exon | 21912725 | 21913039 | 21912725 | ID=MS.gene026232.t1.exon6;Parent=MS.gene026232.t1 |
| chr1.1 | CDS | 21912725 | 21913039 | 21912725 | ID=cds.MS.gene026232.t1;Parent=MS.gene026232.t1 |
| Gene Sequence |
| Protein sequence |