AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51667

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51667.t1 MTR_3g010330 94.976 418 6 1 16 418 67 484 0.0 825
MS.gene51667.t1 MTR_3g080810 55.819 421 166 3 15 416 76 495 2.63e-160 461
MS.gene51667.t1 MTR_3g117500 53.901 423 171 6 17 417 67 487 2.32e-152 440
MS.gene51667.t1 MTR_1g088190 55.932 413 161 4 22 415 69 479 4.01e-151 437
MS.gene51667.t1 MTR_8g104820 52.246 423 180 5 16 417 72 493 1.90e-147 428
MS.gene51667.t1 MTR_4g035955 50.585 427 193 4 3 414 43 466 6.00e-142 413
MS.gene51667.t1 MTR_4g035930 49.415 427 198 4 3 414 44 467 5.36e-140 408
MS.gene51667.t1 MTR_4g035975 51.313 419 181 7 15 414 75 489 2.33e-137 402
MS.gene51667.t1 MTR_5g010000 46.209 422 201 7 16 418 82 496 7.67e-119 355
MS.gene51667.t1 MTR_5g009970 44.656 421 207 7 15 416 8 421 2.37e-118 352
MS.gene51667.t1 MTR_5g009970 44.524 420 207 7 16 416 83 495 7.04e-117 350
MS.gene51667.t1 MTR_8g099410 44.651 430 207 9 16 418 70 495 3.34e-112 339
MS.gene51667.t1 MTR_8g099410 44.860 428 205 9 16 416 70 493 5.80e-111 339
MS.gene51667.t1 MTR_3g080190 42.958 426 214 7 16 414 82 505 1.61e-107 327
MS.gene51667.t1 MTR_5g085730 41.395 430 215 9 16 414 73 496 4.14e-107 326
MS.gene51667.t1 MTR_5g009970 42.893 401 203 7 35 416 1 394 1.71e-105 318
MS.gene51667.t1 MTR_5g093590 42.588 425 214 8 16 412 76 498 6.97e-103 315
MS.gene51667.t1 MTR_3g105230 41.379 406 213 6 16 404 72 469 1.66e-102 313
MS.gene51667.t1 MTR_1g037340 43.632 424 213 8 13 415 64 482 2.31e-101 310
MS.gene51667.t1 MTR_3g023740 42.686 417 214 6 16 415 72 480 1.39e-98 303
MS.gene51667.t1 MTR_4g074960 43.124 429 211 10 12 412 67 490 7.54e-97 302
MS.gene51667.t1 MTR_3g113720 39.813 427 219 10 16 412 98 516 1.74e-87 276
MS.gene51667.t1 MTR_1g088190 57.031 256 105 2 22 273 69 323 5.11e-86 266
MS.gene51667.t1 MTR_8g075990 41.218 427 213 12 16 412 104 522 7.52e-83 264
MS.gene51667.t1 MTR_5g009970 42.470 332 168 5 102 416 1 326 6.84e-82 255
MS.gene51667.t1 MTR_0393s0050 87.143 140 3 1 273 397 20 159 1.50e-81 249
MS.gene51667.t1 MTR_2g028480 39.509 448 210 18 17 417 159 592 3.28e-65 219
MS.gene51667.t1 MTR_3g082440 36.913 447 223 19 11 411 155 588 3.25e-62 212
MS.gene51667.t1 MTR_3g090540 33.483 445 236 17 15 411 148 580 1.83e-56 196
MS.gene51667.t1 MTR_7g108925 51.899 158 60 2 273 415 43 199 3.87e-50 169
MS.gene51667.t1 MTR_1g037320 49.080 163 78 3 35 195 1 160 1.02e-31 122
MS.gene51667.t1 MTR_1g037320 35.772 123 63 2 305 412 168 289 6.13e-15 75.1
MS.gene51667.t1 MTR_4g128810 27.686 242 130 7 187 411 117 330 1.74e-15 77.8
MS.gene51667.t1 MTR_7g108920 50.847 59 25 1 183 237 86 144 8.11e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51667.t1 AT1G71380 73.141 417 96 2 15 416 65 480 0.0 621
MS.gene51667.t1 AT1G22880 71.770 418 102 2 15 417 65 481 0.0 610
MS.gene51667.t1 AT1G22880 70.603 398 101 2 35 417 1 397 0.0 569
MS.gene51667.t1 AT4G02290 58.432 421 154 4 14 415 92 510 1.90e-167 480
MS.gene51667.t1 AT1G02800 58.195 421 153 5 14 415 83 499 1.74e-163 469
MS.gene51667.t1 AT1G70710 53.791 422 174 4 16 418 70 489 1.76e-155 449
MS.gene51667.t1 AT4G02290 57.250 400 150 4 35 415 1 398 3.08e-154 442
MS.gene51667.t1 AT1G23210 52.494 421 179 4 16 417 70 488 3.28e-149 432
MS.gene51667.t1 AT1G22880 78.378 259 56 0 15 273 65 323 5.48e-145 416
MS.gene51667.t1 AT4G39010 50.472 424 187 5 16 417 71 493 7.00e-145 422
MS.gene51667.t1 AT4G39000 45.667 427 209 5 13 417 64 489 2.57e-123 367
MS.gene51667.t1 AT4G23560 47.596 416 191 8 16 412 65 472 1.15e-114 344
MS.gene51667.t1 AT4G39010 51.104 317 148 3 16 325 71 387 3.01e-114 340
MS.gene51667.t1 AT4G38990 43.750 432 215 6 13 417 62 492 7.39e-114 342
MS.gene51667.t1 AT4G09740 46.763 417 193 9 16 412 65 472 1.08e-110 334
MS.gene51667.t1 AT2G32990 43.897 426 206 9 16 412 81 502 4.18e-110 334
MS.gene51667.t1 AT4G11050 43.632 424 208 10 16 412 68 487 1.48e-106 325
MS.gene51667.t1 AT1G64390 43.868 424 207 9 16 412 67 486 1.99e-106 327
MS.gene51667.t1 AT4G11050 43.632 424 208 10 16 412 68 487 6.85e-106 326
MS.gene51667.t1 AT4G11050 43.632 424 208 10 16 412 68 487 9.50e-106 326
MS.gene51667.t1 AT3G43860 43.810 420 211 6 14 416 74 485 2.37e-105 320
MS.gene51667.t1 AT3G43860 43.810 420 211 6 14 416 74 485 2.37e-105 320
MS.gene51667.t1 AT2G44540 42.043 421 219 8 13 412 72 488 5.10e-99 304
MS.gene51667.t1 AT2G44550 41.667 420 221 7 13 412 72 487 6.72e-98 301
MS.gene51667.t1 AT2G44570 41.882 425 221 9 13 415 72 492 5.45e-97 299
MS.gene51667.t1 AT2G44560 42.689 424 218 8 13 415 72 491 1.18e-95 295
MS.gene51667.t1 AT1G75680 43.750 416 200 10 16 405 98 505 1.62e-94 294
MS.gene51667.t1 AT1G19940 40.714 420 215 10 16 409 89 500 1.40e-91 286
MS.gene51667.t1 AT1G19940 40.714 420 215 10 16 409 89 500 1.40e-91 286
MS.gene51667.t1 AT1G48930 42.925 424 211 8 16 412 72 491 7.55e-91 287
MS.gene51667.t1 AT1G19940 41.925 322 173 7 16 326 89 407 2.12e-71 231
MS.gene51667.t1 AT4G38990 42.761 297 142 3 13 304 62 335 3.57e-71 228
MS.gene51667.t1 AT2G44570 41.916 334 182 9 13 338 72 401 1.09e-68 223
MS.gene51667.t1 AT4G24260 37.978 445 219 16 17 416 156 588 3.91e-64 217
MS.gene51667.t1 AT5G49720 39.013 446 214 16 17 416 155 588 2.51e-63 214
MS.gene51667.t1 AT1G65610 35.281 445 231 19 13 412 156 588 8.74e-56 194
MS.gene51667.t1 AT4G24260 39.296 341 168 14 17 326 156 488 6.86e-44 160
MS.gene51667.t1 AT4G24260 41.481 270 126 10 17 259 156 420 1.64e-41 152

Find 95 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACAGTTCTTAAGGTATT+TGG 0.144027 3.4:+5240245 None:intergenic
ATGGCTCCAACCAATATATT+AGG 0.202587 3.4:+5239953 None:intergenic
TGCTGTTAAATACTACAATT+TGG 0.250375 3.4:-5240889 MS.gene51667:CDS
CTACAATTTGGCCAAGTCTT+TGG 0.251872 3.4:-5240877 MS.gene51667:CDS
CCAGAATATGAGCAATAAAA+TGG 0.291892 3.4:+5241303 None:intergenic
TACAATTTGGCCAAGTCTTT+GGG 0.295167 3.4:-5240876 MS.gene51667:CDS
AATAAGACTTGCCTGTCTTT+TGG 0.300729 3.4:+5240223 None:intergenic
CTGGTTTGGACCTCCAACTA+TGG 0.301617 3.4:+5239934 None:intergenic
CAACATTTGTGATCAACATT+TGG 0.314931 3.4:+5241558 None:intergenic
TGAATTCTCTTGGGAAAATA+TGG 0.319055 3.4:+5240073 None:intergenic
TTATCCCAGCTGAAGATATC+AGG 0.329473 3.4:+5240840 None:intergenic
GCTCTTGCTTCTTTCATTTG+TGG 0.342700 3.4:+5241660 None:intergenic
TCATGGAGCACAATTGAATA+TGG 0.352249 3.4:-5241696 MS.gene51667:CDS
CTATAATCACCGCGATCATC+TGG 0.352990 3.4:+5239899 None:intergenic
GAATCAGAACCCTAATATAT+TGG 0.355685 3.4:-5239963 MS.gene51667:CDS
AATCTAACATTAATTGTTAC+CGG 0.359003 3.4:+5239817 None:intergenic
ATACACAAACATTGATTTGC+AGG 0.366987 3.4:-5241799 MS.gene51667:CDS
GATTTGCAGGTAGATTTAAC+AGG 0.367598 3.4:-5241786 MS.gene51667:CDS
TACAACCTATTCCAAGTATA+TGG 0.367719 3.4:-5240312 MS.gene51667:CDS
TAGGGTTCTGATTCATTGAA+TGG 0.377070 3.4:+5239972 None:intergenic
TCCTCTGTGGTGAATTCTCT+TGG 0.381552 3.4:+5240063 None:intergenic
CTTTGTAGCTGCCATATACT+TGG 0.384398 3.4:+5240301 None:intergenic
TACATCAATGGTGGGATTGT+TGG 0.387929 3.4:-5239857 MS.gene51667:CDS
GGAAATCCATCGTTCTGGTT+TGG 0.392660 3.4:+5239920 None:intergenic
TTCAGCAGCAACATCAGAAC+CGG 0.401931 3.4:+5241476 None:intergenic
ACACCGACATAGAGTCTTCC+AGG 0.415923 3.4:+5241588 None:intergenic
ACATATTGAAGATTGCTTGC+AGG 0.417752 3.4:+5240356 None:intergenic
CCACCATTGATGTAAGTTGC+TGG 0.419287 3.4:+5239866 None:intergenic
TTGCTCATATTCTGGATTCA+AGG 0.420522 3.4:-5241295 MS.gene51667:intron
TGGCTCCAACCAATATATTA+GGG 0.420525 3.4:+5239954 None:intergenic
GGACCTTTAGCGTACTTTGC+CGG 0.422505 3.4:-5239836 MS.gene51667:CDS
CTAACAGTGTCCATATCTTC+TGG 0.423308 3.4:+5241528 None:intergenic
CAGTTTGCTTTGCAGTATCA+AGG 0.425288 3.4:-5241360 MS.gene51667:CDS
TTGGGAAAGACCAGAAGATA+TGG 0.432588 3.4:-5241538 MS.gene51667:CDS
CAAATGTTGATCACAAATGT+TGG 0.436805 3.4:-5241557 MS.gene51667:CDS
CATCTGGAAATCCATCGTTC+TGG 0.436950 3.4:+5239915 None:intergenic
ATAAGAACTTTGATCAATAT+AGG 0.437991 3.4:-5240665 MS.gene51667:CDS
TGTAGTTGAAGAGGGTGAAT+TGG 0.441166 3.4:+5240608 None:intergenic
TCAGTTCATCCACAGACAAT+AGG 0.447266 3.4:-5240022 MS.gene51667:CDS
AGCTGCCATATACTTGGAAT+AGG 0.451707 3.4:+5240307 None:intergenic
ATATTGGTTGGAGCCATAGT+TGG 0.454285 3.4:-5239947 MS.gene51667:CDS
TTTGTTGAGGACTGCACAAA+AGG 0.457433 3.4:-5241388 MS.gene51667:CDS
AATTGAATATGGAAAGAGAA+TGG 0.462216 3.4:-5241685 MS.gene51667:CDS
ATCAACCTGATATCTTCAGC+TGG 0.462559 3.4:-5240845 MS.gene51667:CDS
AACAAAAGCTTAGAATAAGT+TGG 0.464270 3.4:+5241405 None:intergenic
AAATGTTGATCACAAATGTT+GGG 0.467634 3.4:-5241556 MS.gene51667:CDS
TCTTCAGGATGAACTATTGT+GGG 0.468517 3.4:-5240940 MS.gene51667:intron
GTGCACATGTCCTTCTCTCA+AGG 0.474161 3.4:-5240806 MS.gene51667:CDS
TTAGAACTTTGTTGTTCCAT+TGG 0.474497 3.4:+5241825 None:intergenic
ATTGTTGTTGTAAATGCCAT+TGG 0.476209 3.4:+5241723 None:intergenic
TTACAACAACAATGTTATCA+TGG 0.477197 3.4:-5241713 MS.gene51667:CDS
ATTGAATATGGAAAGAGAAT+GGG 0.486477 3.4:-5241684 MS.gene51667:CDS
ACAGGAGGCTATTATGATGC+AGG 0.500087 3.4:-5241768 MS.gene51667:CDS
CAGAACCCTAATATATTGGT+TGG 0.511456 3.4:-5239959 MS.gene51667:CDS
CCTCTGTGGTGAATTCTCTT+GGG 0.514992 3.4:+5240064 None:intergenic
ATCTTCAGGATGAACTATTG+TGG 0.519125 3.4:-5240941 MS.gene51667:intron
AAGAACTGTTGCCAAAAGAC+AGG 0.526337 3.4:-5240234 MS.gene51667:CDS
ATCATCAGCTCCCAAAGACT+TGG 0.531480 3.4:+5240866 None:intergenic
GTAGTTGAAGAGGGTGAATT+GGG 0.534837 3.4:+5240609 None:intergenic
AACTGCTGCTGCACTTGCTG+CGG 0.539280 3.4:-5241454 MS.gene51667:CDS
TATGTATCTTCAAACAATCC+CGG 0.544424 3.4:-5241495 MS.gene51667:CDS
TTGGTTGGAGCCATAGTTGG+AGG 0.545842 3.4:-5239944 MS.gene51667:CDS
CTACAGAGAGCATTGCTGAA+TGG 0.545991 3.4:-5240690 MS.gene51667:intron
CCACAGACAATAGGATGTGA+TGG 0.547733 3.4:-5240013 MS.gene51667:CDS
GAACCAGCAACTTACATCAA+TGG 0.548177 3.4:-5239869 MS.gene51667:CDS
AGCTGGGATAACAAATATGC+TGG 0.549315 3.4:-5240828 MS.gene51667:CDS
GGAAGACTCTATGTCGGTGT+TGG 0.560843 3.4:-5241585 MS.gene51667:CDS
TTACCGGCAAAGTACGCTAA+AGG 0.575384 3.4:+5239833 None:intergenic
AACTATTGTGGGGAGCTGCA+TGG 0.591973 3.4:-5240929 MS.gene51667:CDS
TCCAACTTACCCTTGAGAGA+AGG 0.595445 3.4:+5240796 None:intergenic
TGCACATGTCCTTCTCTCAA+GGG 0.598418 3.4:-5240805 MS.gene51667:intron
CCATCACATCCTATTGTCTG+TGG 0.600403 3.4:+5240013 None:intergenic
TTGCAGGTAGATTTAACAGG+AGG 0.602859 3.4:-5241783 MS.gene51667:CDS
TCAACCTGATATCTTCAGCT+GGG 0.606032 3.4:-5240844 MS.gene51667:CDS
GGTTCATACAGTGATTCACT+TGG 0.609927 3.4:-5241339 MS.gene51667:CDS
TGTATACTGTGTAGTTGAAG+AGG 0.614209 3.4:+5240599 None:intergenic
CCAGCAACTTACATCAATGG+TGG 0.615251 3.4:-5239866 MS.gene51667:CDS
GTGTTGATGTTGCACACTTG+AGG 0.620658 3.4:+5241610 None:intergenic
AAGTGTGCAACATCAACACC+TGG 0.627700 3.4:-5241606 MS.gene51667:CDS
AAGCACACATTTAACTGTGG+TGG 0.628128 3.4:-5240281 MS.gene51667:CDS
TCAGCAGCAACATCAGAACC+GGG 0.629928 3.4:+5241477 None:intergenic
CAGCAACTTACATCAATGGT+GGG 0.637988 3.4:-5239865 MS.gene51667:CDS
CTTCAGGATGAACTATTGTG+GGG 0.648937 3.4:-5240939 MS.gene51667:intron
GTATACTGTGTAGTTGAAGA+GGG 0.651354 3.4:+5240600 None:intergenic
TGAGGAGATAATCTGTGGCG+TGG 0.651976 3.4:+5241628 None:intergenic
CCCAAGAGAATTCACCACAG+AGG 0.660661 3.4:-5240064 MS.gene51667:CDS
CAGACAATAGGATGTGATGG+AGG 0.672550 3.4:-5240010 MS.gene51667:CDS
GGAGGTCCAAACCAGAACGA+TGG 0.685780 3.4:-5239926 MS.gene51667:CDS
ACACCTGGAAGACTCTATGT+CGG 0.686227 3.4:-5241591 MS.gene51667:CDS
ACACTTGAGGAGATAATCTG+TGG 0.686648 3.4:+5241623 None:intergenic
TCAACTACACAGTATACACA+AGG 0.701067 3.4:-5240594 MS.gene51667:intron
TGTGGATGAACTGATAGTGA+AGG 0.707912 3.4:+5240031 None:intergenic
GATGGATTTCCAGATGATCG+CGG 0.728493 3.4:-5239908 MS.gene51667:CDS
ACAAAGCACACATTTAACTG+TGG 0.729394 3.4:-5240284 MS.gene51667:CDS
AAGGCAATGAAGATCCTCTG+TGG 0.790898 3.4:+5240050 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTGTTGTAAAATTTC+AGG - chr3.4:5241496-5241515 MS.gene51667:CDS 15.0%
!!! ATAAAATCAATTTTAAACAG+AGG - chr3.4:5240578-5240597 MS.gene51667:intron 15.0%
!!! TAAAATCAATTTTAAACAGA+GGG - chr3.4:5240579-5240598 MS.gene51667:intron 15.0%
!!! TATAGTTAAATATCTAGTTT+TGG - chr3.4:5240442-5240461 MS.gene51667:intron 15.0%
!! ATAAGAACTTTGATCAATAT+AGG - chr3.4:5240983-5241002 MS.gene51667:intron 20.0%
!! TAGAATACTATAATAGTTGA+TGG + chr3.4:5241153-5241172 None:intergenic 20.0%
!!! AACAAATTTTATCAACAAAG+AGG + chr3.4:5241486-5241505 None:intergenic 20.0%
!!! ATGACATTTTAGTACTAAAA+AGG - chr3.4:5241214-5241233 MS.gene51667:intron 20.0%
!!! TGACATTTTAGTACTAAAAA+GGG - chr3.4:5241215-5241234 MS.gene51667:intron 20.0%
! AAATGTTGATCACAAATGTT+GGG - chr3.4:5240092-5240111 MS.gene51667:intron 25.0%
! AACAAAAGCTTAGAATAAGT+TGG + chr3.4:5240246-5240265 None:intergenic 25.0%
! AATAGGCATTATTTATCTTC+AGG - chr3.4:5240693-5240712 MS.gene51667:intron 25.0%
! AATTGAATATGGAAAGAGAA+TGG - chr3.4:5239963-5239982 MS.gene51667:CDS 25.0%
! ATTGAATATGGAAAGAGAAT+GGG - chr3.4:5239964-5239983 MS.gene51667:CDS 25.0%
! CAAAGTTTAGACAAACAAAT+TGG + chr3.4:5240900-5240919 None:intergenic 25.0%
! TCTCTCTAATAGTAAGAAAT+AGG + chr3.4:5240645-5240664 None:intergenic 25.0%
! TGATTCATTGAATGGAAAAA+CGG + chr3.4:5241671-5241690 None:intergenic 25.0%
! TGCTGTTAAATACTACAATT+TGG - chr3.4:5240759-5240778 MS.gene51667:intron 25.0%
! TTACAACAACAATGTTATCA+TGG - chr3.4:5239935-5239954 MS.gene51667:CDS 25.0%
!! TGTGAAATTCAATTTTCCAA+TGG - chr3.4:5239909-5239928 MS.gene51667:CDS 25.0%
!! TTTCAGGTAGACTATATATT+AGG - chr3.4:5241512-5241531 MS.gene51667:CDS 25.0%
ATTGCTTGAATTAATGTGCA+GGG - chr3.4:5241251-5241270 MS.gene51667:intron 30.0%
CAAATGTTGATCACAAATGT+TGG - chr3.4:5240091-5240110 MS.gene51667:intron 30.0%
CAACATTTGTGATCAACATT+TGG + chr3.4:5240093-5240112 None:intergenic 30.0%
CCAGAATATGAGCAATAAAA+TGG + chr3.4:5240348-5240367 None:intergenic 30.0%
GAATCAGAACCCTAATATAT+TGG - chr3.4:5241685-5241704 MS.gene51667:CDS 30.0%
TACAACCTATTCCAAGTATA+TGG - chr3.4:5241336-5241355 MS.gene51667:CDS 30.0%
TATGTATCTTCAAACAATCC+CGG - chr3.4:5240153-5240172 MS.gene51667:intron 30.0%
TATTGCTTGAATTAATGTGC+AGG - chr3.4:5241250-5241269 MS.gene51667:intron 30.0%
TCTACTTGTATCGTTCTAAT+AGG - chr3.4:5240676-5240695 MS.gene51667:CDS 30.0%
TGAATTCTCTTGGGAAAATA+TGG + chr3.4:5241578-5241597 None:intergenic 30.0%
TTTGGTGAGTATCACTATTA+GGG - chr3.4:5240460-5240479 MS.gene51667:intron 30.0%
! ATTGTTGTTGTAAATGCCAT+TGG + chr3.4:5239928-5239947 None:intergenic 30.0%
! CCATTTTATTGCTCATATTC+TGG - chr3.4:5240345-5240364 MS.gene51667:CDS 30.0%
! CTTATTCTAAGCTTTTGTTG+AGG - chr3.4:5240247-5240266 MS.gene51667:CDS 30.0%
! TTGGTTGTTAAGTTTGAGAT+CGG - chr3.4:5240535-5240554 MS.gene51667:intron 30.0%
! TTTTGGTGAGTATCACTATT+AGG - chr3.4:5240459-5240478 MS.gene51667:intron 30.0%
!! ATACACAAACATTGATTTGC+AGG - chr3.4:5239849-5239868 MS.gene51667:CDS 30.0%
ACAAAGCACACATTTAACTG+TGG - chr3.4:5241364-5241383 MS.gene51667:CDS 35.0%
ACATATTGAAGATTGCTTGC+AGG + chr3.4:5241295-5241314 None:intergenic 35.0%
ACCATATAGGACATTCTAAG+TGG + chr3.4:5241545-5241564 None:intergenic 35.0%
ATCTTCAGGATGAACTATTG+TGG - chr3.4:5240707-5240726 MS.gene51667:intron 35.0%
ATGGCTCCAACCAATATATT+AGG + chr3.4:5241698-5241717 None:intergenic 35.0%
ATGTCCTATATGGTAGGTTA+CGG - chr3.4:5241551-5241570 MS.gene51667:CDS 35.0%
CAGAACCCTAATATATTGGT+TGG - chr3.4:5241689-5241708 MS.gene51667:CDS 35.0%
CTTAGAATGTCCTATATGGT+AGG - chr3.4:5241545-5241564 MS.gene51667:CDS 35.0%
GATTTGCAGGTAGATTTAAC+AGG - chr3.4:5239862-5239881 MS.gene51667:CDS 35.0%
GTATACTGTGTAGTTGAAGA+GGG + chr3.4:5241051-5241070 None:intergenic 35.0%
TACAATTTGGCCAAGTCTTT+GGG - chr3.4:5240772-5240791 MS.gene51667:intron 35.0%
TCAACTACACAGTATACACA+AGG - chr3.4:5241054-5241073 MS.gene51667:intron 35.0%
TCATGGAGCACAATTGAATA+TGG - chr3.4:5239952-5239971 MS.gene51667:CDS 35.0%
TCCACTTAGAATGTCCTATA+TGG - chr3.4:5241541-5241560 MS.gene51667:CDS 35.0%
TCTTCAGGATGAACTATTGT+GGG - chr3.4:5240708-5240727 MS.gene51667:intron 35.0%
TGGCTCCAACCAATATATTA+GGG + chr3.4:5241697-5241716 None:intergenic 35.0%
TGTATACTGTGTAGTTGAAG+AGG + chr3.4:5241052-5241071 None:intergenic 35.0%
TTGCTCATATTCTGGATTCA+AGG - chr3.4:5240353-5240372 MS.gene51667:CDS 35.0%
TTGCTTGAATTAATGTGCAG+GGG - chr3.4:5241252-5241271 MS.gene51667:intron 35.0%
TTGGTGAGTATCACTATTAG+GGG - chr3.4:5240461-5240480 MS.gene51667:intron 35.0%
! AATAAGACTTGCCTGTCTTT+TGG + chr3.4:5241428-5241447 None:intergenic 35.0%
! GCAACAGTTCTTAAGGTATT+TGG + chr3.4:5241406-5241425 None:intergenic 35.0%
! TAGGGTTCTGATTCATTGAA+TGG + chr3.4:5241679-5241698 None:intergenic 35.0%
! TCTTTTGGCAACAGTTCTTA+AGG + chr3.4:5241413-5241432 None:intergenic 35.0%
AAGAACTGTTGCCAAAAGAC+AGG - chr3.4:5241414-5241433 MS.gene51667:CDS 40.0%
AAGCACACATTTAACTGTGG+TGG - chr3.4:5241367-5241386 MS.gene51667:CDS 40.0%
ACACTTGAGGAGATAATCTG+TGG + chr3.4:5240028-5240047 None:intergenic 40.0%
AGCTGCCATATACTTGGAAT+AGG + chr3.4:5241344-5241363 None:intergenic 40.0%
AGCTGGGATAACAAATATGC+TGG - chr3.4:5240820-5240839 MS.gene51667:CDS 40.0%
ATCAACCTGATATCTTCAGC+TGG - chr3.4:5240803-5240822 MS.gene51667:intron 40.0%
CAACAAAGAGGAGAAGAGAT+TGG + chr3.4:5241474-5241493 None:intergenic 40.0%
CAGCAACTTACATCAATGGT+GGG - chr3.4:5241783-5241802 MS.gene51667:CDS 40.0%
CTAACAGTGTCCATATCTTC+TGG + chr3.4:5240123-5240142 None:intergenic 40.0%
CTACAATTTGGCCAAGTCTT+TGG - chr3.4:5240771-5240790 MS.gene51667:intron 40.0%
CTTCAGGATGAACTATTGTG+GGG - chr3.4:5240709-5240728 MS.gene51667:intron 40.0%
CTTTGTAGCTGCCATATACT+TGG + chr3.4:5241350-5241369 None:intergenic 40.0%
GAACCAGCAACTTACATCAA+TGG - chr3.4:5241779-5241798 MS.gene51667:CDS 40.0%
GCTCTTGCTTCTTTCATTTG+TGG + chr3.4:5239991-5240010 None:intergenic 40.0%
GGGTCTGGATTATCTAATGT+AGG - chr3.4:5240481-5240500 MS.gene51667:intron 40.0%
GGTTCATACAGTGATTCACT+TGG - chr3.4:5240309-5240328 MS.gene51667:CDS 40.0%
GTAGTTGAAGAGGGTGAATT+GGG + chr3.4:5241042-5241061 None:intergenic 40.0%
TCAACCTGATATCTTCAGCT+GGG - chr3.4:5240804-5240823 MS.gene51667:intron 40.0%
TCAGTTCATCCACAGACAAT+AGG - chr3.4:5241626-5241645 MS.gene51667:CDS 40.0%
TGCTTGAATTAATGTGCAGG+GGG - chr3.4:5241253-5241272 MS.gene51667:intron 40.0%
TGTAGTTGAAGAGGGTGAAT+TGG + chr3.4:5241043-5241062 None:intergenic 40.0%
TTATCCCAGCTGAAGATATC+AGG + chr3.4:5240811-5240830 None:intergenic 40.0%
TTGCAGGTAGATTTAACAGG+AGG - chr3.4:5239865-5239884 MS.gene51667:CDS 40.0%
TTGGGAAAGACCAGAAGATA+TGG - chr3.4:5240110-5240129 MS.gene51667:intron 40.0%
TTTGTTGAGGACTGCACAAA+AGG - chr3.4:5240260-5240279 MS.gene51667:CDS 40.0%
! ATATTGGTTGGAGCCATAGT+TGG - chr3.4:5241701-5241720 MS.gene51667:CDS 40.0%
! CAGTTTGCTTTGCAGTATCA+AGG - chr3.4:5240288-5240307 MS.gene51667:CDS 40.0%
! CTGTGTGATACAGTTTTTCG+AGG - chr3.4:5240616-5240635 MS.gene51667:CDS 40.0%
! TACATCAATGGTGGGATTGT+TGG - chr3.4:5241791-5241810 MS.gene51667:CDS 40.0%
! TGTGGATGAACTGATAGTGA+AGG + chr3.4:5241620-5241639 None:intergenic 40.0%
! TTACACGTAGCAGACAGTTT+TGG - chr3.4:5240516-5240535 MS.gene51667:intron 40.0%
AAGGCAATGAAGATCCTCTG+TGG + chr3.4:5241601-5241620 None:intergenic 45.0%
AAGTGTGCAACATCAACACC+TGG - chr3.4:5240042-5240061 MS.gene51667:CDS 45.0%
ACACCTGGAAGACTCTATGT+CGG - chr3.4:5240057-5240076 MS.gene51667:CDS 45.0%
ACAGGAGGCTATTATGATGC+AGG - chr3.4:5239880-5239899 MS.gene51667:CDS 45.0%
ATCATCAGCTCCCAAAGACT+TGG + chr3.4:5240785-5240804 None:intergenic 45.0%
CAGACAATAGGATGTGATGG+AGG - chr3.4:5241638-5241657 MS.gene51667:CDS 45.0%
CATCTGGAAATCCATCGTTC+TGG + chr3.4:5241736-5241755 None:intergenic 45.0%
CCACAGACAATAGGATGTGA+TGG - chr3.4:5241635-5241654 MS.gene51667:CDS 45.0%
CCACCATTGATGTAAGTTGC+TGG + chr3.4:5241785-5241804 None:intergenic 45.0%
CCAGCAACTTACATCAATGG+TGG - chr3.4:5241782-5241801 MS.gene51667:CDS 45.0%
CCATCACATCCTATTGTCTG+TGG + chr3.4:5241638-5241657 None:intergenic 45.0%
CCTCTGTGGTGAATTCTCTT+GGG + chr3.4:5241587-5241606 None:intergenic 45.0%
CTATAATCACCGCGATCATC+TGG + chr3.4:5241752-5241771 None:intergenic 45.0%
GAGTATCACTATTAGGGGTC+TGG - chr3.4:5240466-5240485 MS.gene51667:intron 45.0%
TCCAACTTACCCTTGAGAGA+AGG + chr3.4:5240855-5240874 None:intergenic 45.0%
TCCTCTGTGGTGAATTCTCT+TGG + chr3.4:5241588-5241607 None:intergenic 45.0%
TCCTTCTCTCAAGGGTAAGT+TGG - chr3.4:5240851-5240870 MS.gene51667:CDS 45.0%
TGCACATGTCCTTCTCTCAA+GGG - chr3.4:5240843-5240862 MS.gene51667:CDS 45.0%
TGGACCGTAACCTACCATAT+AGG + chr3.4:5241558-5241577 None:intergenic 45.0%
TTACCGGCAAAGTACGCTAA+AGG + chr3.4:5241818-5241837 None:intergenic 45.0%
TTCAGCAGCAACATCAGAAC+CGG + chr3.4:5240175-5240194 None:intergenic 45.0%
! GATGGATTTCCAGATGATCG+CGG - chr3.4:5241740-5241759 MS.gene51667:CDS 45.0%
! GGAAATCCATCGTTCTGGTT+TGG + chr3.4:5241731-5241750 None:intergenic 45.0%
! GTGTTGATGTTGCACACTTG+AGG + chr3.4:5240041-5240060 None:intergenic 45.0%
!! CTACAGAGAGCATTGCTGAA+TGG - chr3.4:5240958-5240977 MS.gene51667:intron 45.0%
AACTATTGTGGGGAGCTGCA+TGG - chr3.4:5240719-5240738 MS.gene51667:intron 50.0%
ACACCGACATAGAGTCTTCC+AGG + chr3.4:5240063-5240082 None:intergenic 50.0%
CCAATGCTCGGGTTCTTACT+CGG - chr3.4:5240415-5240434 MS.gene51667:intron 50.0%
CCCAAGAGAATTCACCACAG+AGG - chr3.4:5241584-5241603 MS.gene51667:CDS 50.0%
GGAAGACTCTATGTCGGTGT+TGG - chr3.4:5240063-5240082 MS.gene51667:CDS 50.0%
GGACCTTTAGCGTACTTTGC+CGG - chr3.4:5241812-5241831 MS.gene51667:CDS 50.0%
GTGCACATGTCCTTCTCTCA+AGG - chr3.4:5240842-5240861 MS.gene51667:CDS 50.0%
TCAGCAGCAACATCAGAACC+GGG + chr3.4:5240174-5240193 None:intergenic 50.0%
TGAGGAGATAATCTGTGGCG+TGG + chr3.4:5240023-5240042 None:intergenic 50.0%
TTGGTTGGAGCCATAGTTGG+AGG - chr3.4:5241704-5241723 MS.gene51667:CDS 50.0%
! CCTAGAGCATCTCCAATGCT+CGG - chr3.4:5240403-5240422 MS.gene51667:intron 50.0%
! CTAGAGCATCTCCAATGCTC+GGG - chr3.4:5240404-5240423 MS.gene51667:intron 50.0%
! GGGAGCTGCATGGCTTTTTA+GGG - chr3.4:5240729-5240748 MS.gene51667:intron 50.0%
!! CTGGTTTGGACCTCCAACTA+TGG + chr3.4:5241717-5241736 None:intergenic 50.0%
CCGAGTAAGAACCCGAGCAT+TGG + chr3.4:5240418-5240437 None:intergenic 55.0%
GGAGGTCCAAACCAGAACGA+TGG - chr3.4:5241722-5241741 MS.gene51667:CDS 55.0%
! AACTGCTGCTGCACTTGCTG+CGG - chr3.4:5240194-5240213 MS.gene51667:intron 55.0%
! GGGGAGCTGCATGGCTTTTT+AGG - chr3.4:5240728-5240747 MS.gene51667:intron 55.0%
!! CCGAGCATTGGAGATGCTCT+AGG + chr3.4:5240406-5240425 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 5239826 5241844 5239826 ID=MS.gene51667
chr3.4 mRNA 5239826 5241844 5239826 ID=MS.gene51667.t1;Parent=MS.gene51667
chr3.4 exon 5241296 5241844 5241296 ID=MS.gene51667.t1.exon1;Parent=MS.gene51667.t1
chr3.4 CDS 5241296 5241844 5241296 ID=cds.MS.gene51667.t1;Parent=MS.gene51667.t1
chr3.4 exon 5240806 5240955 5240806 ID=MS.gene51667.t1.exon2;Parent=MS.gene51667.t1
chr3.4 CDS 5240806 5240955 5240806 ID=cds.MS.gene51667.t1;Parent=MS.gene51667.t1
chr3.4 exon 5240595 5240706 5240595 ID=MS.gene51667.t1.exon3;Parent=MS.gene51667.t1
chr3.4 CDS 5240595 5240706 5240595 ID=cds.MS.gene51667.t1;Parent=MS.gene51667.t1
chr3.4 exon 5240231 5240398 5240231 ID=MS.gene51667.t1.exon4;Parent=MS.gene51667.t1
chr3.4 CDS 5240231 5240398 5240231 ID=cds.MS.gene51667.t1;Parent=MS.gene51667.t1
chr3.4 exon 5239826 5240103 5239826 ID=MS.gene51667.t1.exon5;Parent=MS.gene51667.t1
chr3.4 CDS 5239826 5240103 5239826 ID=cds.MS.gene51667.t1;Parent=MS.gene51667.t1
Gene Sequence

>MS.gene51667

ATGGAACAACAAAGTTCTAACACATACACAAACATTGATTTGCAGGTAGATTTAACAGGAGGCTATTATGATGCAGGAGACAATGTGAAATTCAATTTTCCAATGGCATTTACAACAACAATGTTATCATGGAGCACAATTGAATATGGAAAGAGAATGGGACCACAAATGAAAGAAGCAAGAGCTGCAATTCGCCACGCCACAGATTATCTCCTCAAGTGTGCAACATCAACACCTGGAAGACTCTATGTCGGTGTTGGAGATCCAAATGTTGATCACAAATGTTGGGAAAGACCAGAAGATATGGACACTGTTAGAACTGTTTATTATGTATCTTCAAACAATCCCGGTTCTGATGTTGCTGCTGAAACTGCTGCTGCACTTGCTGCGGCGTCTATTGTTTTTAGAAAAGTTGATCCAACTTATTCTAAGCTTTTGTTGAGGACTGCACAAAAGGTTTATCAGTTTGCTTTGCAGTATCAAGGTTCATACAGTGATTCACTTGGTTCTGCTGTTTGTCCATTTTATTGCTCATATTCTGGATTCAAGGTAAAATTTATTTTCTACTGAGTTTTAACCTAGAGCATCTCCAATGCTCGGGTTCTTACTCGGTTCATATAGTTAAATATCTAGTTTTGGTGAGTATCACTATTAGGGGTCTGGATTATCTAATGTAGGAGAATCACACATTTACACGTAGCAGACAGTTTTGGTTGTTAAGTTTGAGATCGGACATCTCAGATCACACATTCATAAAATCAATTTTAAACAGAGGGTCAAAATCACTAAACTGTGTGATACAGTTTTTCGAGGCAACCTATTTCTTACTATTAGAGAGAGTTGATGTGATTCTACTTGTATCGTTCTAATAGGCATTATTTATCTTCAGGATGAACTATTGTGGGGAGCTGCATGGCTTTTTAGGGCAACAAATGCTGTTAAATACTACAATTTGGCCAAGTCTTTGGGAGCTGATGATCAACCTGATATCTTCAGCTGGGATAACAAATATGCTGGTGCACATGTCCTTCTCTCAAGGGTAAGTTGGATTTCTTTGAAAAATATGAATTACCAATTTGTTTGTCTAAACTTTGCTGATTCACTAGTTTTCTATTGTTGTTTTTAATTGTTACTACAGAGAGCATTGCTGAATGGTGATAAGAACTTTGATCAATATAGGCAAGAAGCTGATGATTTCATGTGCAAGATCTTGCCCAATTCACCCTCTTCAACTACACAGTATACACAAGGTAAAAGCAACATGACTATCAGTGTTTTGACTTTCAAAGAAGTAATATTGTTTTTCATTATTCAAAAAATGTTACCATCAACTATTATAGTATTCTAAATGATTACAAGAATAGAGAATGATTTCATGAAAATGTAAAATGACATTTTAGTACTAAAAAGGGTGTTGTTTCATGTATTGCTTGAATTAATGTGCAGGGGGACTCATGTTCAAGTTGCCTGCAAGCAATCTTCAATATGTGACATCTATTACATTCTTACTTACAACCTATTCCAAGTATATGGCAGCTACAAAGCACACATTTAACTGTGGTGGTGTCTTTGTCACTCCAAATACCTTAAGAACTGTTGCCAAAAGACAGGCAAGTCTTATTATTATTTTAACAAAAAAGTTGTACCAATCTCTTCTCCTCTTTGTTGATAAAATTTGTTGTAAAATTTCAGGTAGACTATATATTAGGTGAAAATCCACTTAGAATGTCCTATATGGTAGGTTACGGTCCATATTTTCCCAAGAGAATTCACCACAGAGGATCTTCATTGCCTTCACTATCAGTTCATCCACAGACAATAGGATGTGATGGAGGTTTCAATCCGTTTTTCCATTCAATGAATCAGAACCCTAATATATTGGTTGGAGCCATAGTTGGAGGTCCAAACCAGAACGATGGATTTCCAGATGATCGCGGTGATTATAGTCATTCAGAACCAGCAACTTACATCAATGGTGGGATTGTTGGACCTTTAGCGTACTTTGCCGGTAACAATTAA
Protein sequence

>MS.gene51667.t1

MEQQSSNTYTNIDLQVDLTGGYYDAGDNVKFNFPMAFTTTMLSWSTIEYGKRMGPQMKEARAAIRHATDYLLKCATSTPGRLYVGVGDPNVDHKCWERPEDMDTVRTVYYVSSNNPGSDVAAETAAALAAASIVFRKVDPTYSKLLLRTAQKVYQFALQYQGSYSDSLGSAVCPFYCSYSGFKDELLWGAAWLFRATNAVKYYNLAKSLGADDQPDIFSWDNKYAGAHVLLSRRALLNGDKNFDQYRQEADDFMCKILPNSPSSTTQYTQGGLMFKLPASNLQYVTSITFLLTTYSKYMAATKHTFNCGGVFVTPNTLRTVAKRQASYGPYFPKRIHHRGSSLPSLSVHPQTIGCDGGFNPFFHSMNQNPNILVGAIVGGPNQNDGFPDDRGDYSHSEPATYINGGIVGPLAYFAGNN