AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026233

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026233.t1 MTR_1g037340 82.158 482 86 0 1 482 1 482 0.0 816
MS.gene026233.t1 MTR_8g099410 54.077 466 205 6 25 482 28 492 4.18e-177 507
MS.gene026233.t1 MTR_8g099410 54.077 466 205 6 25 482 28 492 1.77e-175 507
MS.gene026233.t1 MTR_3g080190 50.207 484 229 7 5 479 23 503 3.05e-170 490
MS.gene026233.t1 MTR_5g085730 49.482 483 230 7 6 479 17 494 3.63e-167 482
MS.gene026233.t1 MTR_4g074960 52.137 468 210 6 25 481 28 492 2.46e-165 481
MS.gene026233.t1 MTR_5g093590 48.770 488 233 8 11 481 13 500 1.51e-162 469
MS.gene026233.t1 MTR_5g010000 49.130 460 224 5 25 481 40 492 1.57e-145 426
MS.gene026233.t1 MTR_5g009970 47.609 460 231 5 25 481 41 493 8.64e-143 419
MS.gene026233.t1 MTR_3g080810 46.694 484 236 10 12 482 20 494 9.63e-143 419
MS.gene026233.t1 MTR_8g104820 48.077 468 227 8 25 482 30 491 1.38e-140 413
MS.gene026233.t1 MTR_3g117500 46.751 477 232 8 19 482 18 485 3.42e-137 404
MS.gene026233.t1 MTR_4g035930 45.493 477 244 9 11 481 1 467 2.81e-134 396
MS.gene026233.t1 MTR_3g010330 47.346 471 232 9 20 482 19 481 9.44e-134 395
MS.gene026233.t1 MTR_4g035955 45.588 476 244 9 11 481 1 466 6.47e-133 393
MS.gene026233.t1 MTR_3g105230 44.966 447 233 7 25 468 30 466 5.88e-129 383
MS.gene026233.t1 MTR_3g023740 44.082 490 256 9 1 482 1 480 6.44e-126 375
MS.gene026233.t1 MTR_1g088190 46.137 466 218 9 25 482 39 479 1.56e-125 374
MS.gene026233.t1 MTR_4g035975 44.625 493 243 13 9 481 7 489 2.96e-125 374
MS.gene026233.t1 MTR_5g009970 45.694 418 217 5 67 481 9 419 3.27e-121 361
MS.gene026233.t1 MTR_3g113720 41.756 467 255 9 26 481 58 518 1.06e-119 361
MS.gene026233.t1 MTR_8g075990 43.070 469 248 9 26 482 64 525 1.40e-112 343
MS.gene026233.t1 MTR_5g009970 44.110 399 213 5 86 481 1 392 7.25e-109 328
MS.gene026233.t1 MTR_1g037320 95.625 160 7 0 86 245 1 160 9.81e-99 299
MS.gene026233.t1 MTR_1g037320 95.161 124 6 0 356 479 166 289 4.47e-79 248
MS.gene026233.t1 MTR_2g028480 39.315 496 247 14 25 482 111 590 7.05e-86 276
MS.gene026233.t1 MTR_3g082440 39.139 488 254 17 25 481 116 591 8.92e-84 271
MS.gene026233.t1 MTR_3g090540 35.115 524 281 17 5 481 72 583 1.84e-83 269
MS.gene026233.t1 MTR_5g009970 45.619 331 170 5 154 481 1 324 7.08e-82 257
MS.gene026233.t1 MTR_1g088190 44.660 309 140 7 25 326 39 323 6.65e-68 221
MS.gene026233.t1 MTR_7g108925 45.570 158 84 2 326 482 43 199 1.41e-41 148
MS.gene026233.t1 MTR_4g047570 61.947 113 23 2 268 379 1 94 2.04e-35 127
MS.gene026233.t1 MTR_0393s0050 45.205 146 76 3 318 461 13 156 8.84e-34 126
MS.gene026233.t1 MTR_4g128810 37.584 149 87 4 335 481 189 333 4.13e-20 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026233.t1 AT2G44570 59.091 484 190 3 7 482 9 492 0.0 582
MS.gene026233.t1 AT2G44550 59.158 475 192 2 8 481 16 489 0.0 569
MS.gene026233.t1 AT2G44540 57.717 473 199 1 8 479 16 488 0.0 558
MS.gene026233.t1 AT2G44560 58.403 476 197 1 8 482 16 491 0.0 549
MS.gene026233.t1 AT1G64390 53.361 476 213 6 14 482 16 489 2.71e-179 516
MS.gene026233.t1 AT4G11050 54.487 468 206 5 21 481 22 489 2.05e-177 509
MS.gene026233.t1 AT4G11050 54.487 468 206 5 21 481 22 489 1.18e-176 510
MS.gene026233.t1 AT4G11050 54.487 468 206 5 21 481 22 489 1.49e-176 509
MS.gene026233.t1 AT2G32990 48.473 491 237 7 5 479 12 502 1.29e-163 473
MS.gene026233.t1 AT2G44570 55.779 398 169 2 4 394 6 403 2.51e-154 445
MS.gene026233.t1 AT1G48930 49.892 465 220 6 25 479 30 491 5.35e-148 437
MS.gene026233.t1 AT1G02800 49.574 470 224 7 19 482 37 499 1.81e-145 426
MS.gene026233.t1 AT1G23210 48.963 482 231 8 10 482 11 486 3.02e-144 422
MS.gene026233.t1 AT1G70710 47.325 486 241 8 6 482 7 486 3.12e-140 412
MS.gene026233.t1 AT4G02290 48.602 465 226 7 25 482 52 510 3.13e-140 413
MS.gene026233.t1 AT4G23560 45.135 483 252 7 3 481 1 474 4.30e-135 399
MS.gene026233.t1 AT1G71380 46.421 489 243 10 3 482 1 479 9.91e-135 398
MS.gene026233.t1 AT3G43860 45.979 485 246 7 5 482 9 484 7.78e-134 395
MS.gene026233.t1 AT3G43860 45.979 485 246 7 5 482 9 484 7.78e-134 395
MS.gene026233.t1 AT1G22880 46.392 485 242 9 6 482 5 479 2.30e-132 392
MS.gene026233.t1 AT4G39010 46.154 468 237 9 25 482 29 491 1.26e-130 388
MS.gene026233.t1 AT4G09740 43.776 482 260 6 3 481 1 474 1.45e-130 387
MS.gene026233.t1 AT1G19940 45.098 459 239 9 25 476 48 500 1.41e-125 375
MS.gene026233.t1 AT1G19940 45.098 459 239 9 25 476 48 500 1.41e-125 375
MS.gene026233.t1 AT4G39000 45.435 471 234 10 25 481 25 486 4.70e-117 353
MS.gene026233.t1 AT4G38990 44.960 496 238 13 7 481 8 489 2.37e-115 348
MS.gene026233.t1 AT1G75680 44.222 450 238 8 26 468 58 501 9.38e-115 348
MS.gene026233.t1 AT4G02290 45.050 404 209 7 86 482 1 398 1.25e-105 320
MS.gene026233.t1 AT1G22880 44.691 405 206 9 86 482 1 395 1.39e-102 313
MS.gene026233.t1 AT4G39010 43.526 363 192 7 25 378 29 387 3.37e-93 288
MS.gene026233.t1 AT1G19940 44.598 361 193 6 25 379 48 407 3.77e-93 289
MS.gene026233.t1 AT1G65610 36.831 486 267 16 25 481 116 590 2.97e-80 261
MS.gene026233.t1 AT5G49720 36.346 509 282 15 7 482 88 587 5.53e-80 261
MS.gene026233.t1 AT4G24260 37.219 489 267 14 25 482 108 587 4.05e-79 258
MS.gene026233.t1 AT1G22880 46.646 328 160 6 6 327 5 323 9.70e-79 249
MS.gene026233.t1 AT4G38990 44.759 353 162 7 7 354 8 332 3.00e-77 246
MS.gene026233.t1 AT4G24260 35.854 357 196 10 25 352 108 460 2.10e-48 174
MS.gene026233.t1 AT4G24260 36.102 313 170 8 25 310 108 417 3.14e-47 170

Find 103 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCTCCTTCTAATATATT+AGG 0.137971 1.1:+21889728 None:intergenic
ATGCATTATCAGCCATAAAA+TGG 0.173859 1.1:-21891369 MS.gene026233:CDS
ATATTCCAGTAGTGGGTTTA+AGG 0.201253 1.1:-21890895 MS.gene026233:intron
GGGCAGCAGCATGGCTTTAT+AGG 0.201278 1.1:-21890706 MS.gene026233:CDS
TGCTGAAACTGCTGCTGCTT+TGG 0.209306 1.1:-21891185 MS.gene026233:CDS
ACCATGTAACTCATATTTCT+TGG 0.229577 1.1:+21889881 None:intergenic
ATGTTCTTCATCGATCTTAT+AGG 0.238276 1.1:+21891225 None:intergenic
AGTAGGAATGACTTCCAATT+AGG 0.250474 1.1:-21889671 MS.gene026233:CDS
CCCCTCTCCATGTTACTCTT+TGG 0.263890 1.1:+21891693 None:intergenic
TCGATCTTATAGGAATTTCT+AGG 0.273352 1.1:+21891235 None:intergenic
CTGCTCCTTCTAATATATTA+GGG 0.279844 1.1:+21889729 None:intergenic
CTGGTCTTTCCCAACATTGA+TGG 0.294669 1.1:+21891272 None:intergenic
TTGTATTCAGTCCAAATCTT+TGG 0.310841 1.1:+21890330 None:intergenic
ATGAGTTACATGGTGGGATA+TGG 0.319706 1.1:-21889872 MS.gene026233:CDS
GCTGGAGACAATTTGAAGTT+AGG 0.329508 1.1:-21891478 MS.gene026233:CDS
TAGTAGTTGGCTCCCCTAAT+TGG 0.338232 1.1:+21889657 None:intergenic
CCTTCTAATATATTAGGGTT+TGG 0.339168 1.1:+21889734 None:intergenic
ATTTCTCCATATAAAATGTT+TGG 0.348332 1.1:+21891313 None:intergenic
ACAAACAGGATGAATTACTA+TGG 0.351472 1.1:-21890727 MS.gene026233:intron
AAGAGGAGTCTCCAAAGATT+TGG 0.368987 1.1:-21890341 MS.gene026233:CDS
TTGGAGGTGCAGACGACATT+GGG 0.375469 1.1:-21890652 MS.gene026233:CDS
AATGTTACTTGTGCTGATTA+TGG 0.377433 1.1:-21891779 MS.gene026233:CDS
ACTTCTGTTGCACCTTTAGT+TGG 0.383502 1.1:-21889635 MS.gene026233:CDS
TGCATTATCAGCCATAAAAT+GGG 0.387186 1.1:-21891368 MS.gene026233:CDS
CTCCATGTTACTCTTTGGTT+AGG 0.387995 1.1:+21891698 None:intergenic
GTAGGAATGACTTCCAATTA+GGG 0.388741 1.1:-21889670 MS.gene026233:CDS
TGTAAGATCAATGTTTAGTT+GGG 0.394398 1.1:-21890627 MS.gene026233:CDS
TAATGCATTTGTATACTCAT+TGG 0.395697 1.1:+21891384 None:intergenic
GCTAAATACTTTGATTACCT+TGG 0.398450 1.1:-21890671 MS.gene026233:CDS
GTGTAAGATCAATGTTTAGT+TGG 0.398840 1.1:-21890628 MS.gene026233:CDS
CCAAACCCTAATATATTAGA+AGG 0.400990 1.1:-21889734 MS.gene026233:CDS
CAACATTGATGGTCTGAATC+AGG 0.407431 1.1:+21891283 None:intergenic
GTTTATTATGGTTTCAACCA+TGG 0.419924 1.1:-21890236 MS.gene026233:CDS
CTTAATGATGGCAAAGATGC+TGG 0.433310 1.1:-21891662 MS.gene026233:CDS
CATGTTACTCTTTGGTTAGG+AGG 0.436984 1.1:+21891701 None:intergenic
GGCAGCAGCATGGCTTTATA+GGG 0.439461 1.1:-21890705 MS.gene026233:CDS
ATACCATCTTGACATGTAAC+TGG 0.440115 1.1:+21889782 None:intergenic
GTCAAGATGGTATTCAGAAA+TGG 0.444777 1.1:-21889772 MS.gene026233:CDS
AAATACTTTGATTACCTTGG+AGG 0.453131 1.1:-21890668 MS.gene026233:CDS
GCAAAAGTATATTCCAGTAG+TGG 0.458160 1.1:-21890903 MS.gene026233:CDS
CACATCTCTTGTTCAAGCTC+AGG 0.464765 1.1:-21890097 MS.gene026233:intron
ATGGAGCACAATAGAGTTCA+AGG 0.466441 1.1:-21891422 MS.gene026233:CDS
CTAGGTGTTGACATATCCTC+TGG 0.468045 1.1:+21891253 None:intergenic
GCTCCATGATAGCATTGTTA+TGG 0.468136 1.1:+21891438 None:intergenic
AGCATTGCTATCGGAGGGCT+CGG 0.473217 1.1:-21891149 MS.gene026233:CDS
TTTATTATGGTTTCAACCAT+GGG 0.476443 1.1:-21890235 MS.gene026233:CDS
GCTTTATAGGGCCACAGACT+TGG 0.477193 1.1:-21890693 MS.gene026233:CDS
TTACCATAACAATGCTATCA+TGG 0.480734 1.1:-21891441 MS.gene026233:CDS
CCATATAAAATGTTTGGTTG+TGG 0.486979 1.1:+21891319 None:intergenic
TGATTCAGACCATCAATGTT+GGG 0.495893 1.1:-21891281 MS.gene026233:CDS
CTGATTCAGACCATCAATGT+TGG 0.497406 1.1:-21891282 MS.gene026233:CDS
GTGCACAAATTCTTGTTGCA+AGG 0.507769 1.1:-21890589 MS.gene026233:CDS
ATTGTTATGGTAAATGCCAT+TGG 0.511245 1.1:+21891451 None:intergenic
GATCACCTTAAACCCACTAC+TGG 0.513082 1.1:+21890890 None:intergenic
TTAATGATGGCAAAGATGCT+GGG 0.513493 1.1:-21891661 MS.gene026233:CDS
CTGCTGGTGGGATACTATCA+TGG 0.519549 1.1:+21890925 None:intergenic
GCCCTCCGATAGCAATGCTA+TGG 0.525806 1.1:+21891153 None:intergenic
TGCACAAATTCTTGTTGCAA+GGG 0.526552 1.1:-21890588 MS.gene026233:intron
GTGGGTGGATACTATGATGC+TGG 0.530357 1.1:-21891496 MS.gene026233:CDS
TTCTACTGCTACATTTGCAA+TGG 0.537663 1.1:-21890196 MS.gene026233:CDS
CTTGGAGGTGCAGACGACAT+TGG 0.537805 1.1:-21890653 MS.gene026233:CDS
ACAAGAGATGTGAGATCAGA+AGG 0.540179 1.1:+21890108 None:intergenic
CAAAAGTATATTCCAGTAGT+GGG 0.542387 1.1:-21890902 MS.gene026233:CDS
AGTTGGGATGACAAGTATGT+TGG 0.552848 1.1:-21890611 MS.gene026233:CDS
TTCCATAGCATTGCTATCGG+AGG 0.555568 1.1:-21891155 MS.gene026233:CDS
GGGGATTCTGCACTTAATGA+TGG 0.557687 1.1:-21891674 MS.gene026233:CDS
GGTGCAACAGAAGTAGTAGT+TGG 0.560461 1.1:+21889644 None:intergenic
AAGATCGATGAAGAACATCC+AGG 0.560934 1.1:-21891220 MS.gene026233:CDS
GACTTTGCAAACAATTCTAG+AGG 0.562419 1.1:-21890954 MS.gene026233:CDS
TCCATAGCATTGCTATCGGA+GGG 0.570443 1.1:-21891154 MS.gene026233:CDS
CATCATAGTATCCACCCACT+AGG 0.575641 1.1:+21891500 None:intergenic
CCTCTATGATGAATTTGTTG+TGG 0.577152 1.1:+21889839 None:intergenic
TAAGCAAGAACACCAACTAA+AGG 0.577826 1.1:+21889623 None:intergenic
TTTGAAGTTAGGATTTCCAA+TGG 0.577887 1.1:-21891467 MS.gene026233:CDS
ACCAAAGAGTAACATGGAGA+GGG 0.579071 1.1:-21891694 MS.gene026233:CDS
CCACAACAAATTCATCATAG+AGG 0.584665 1.1:-21889839 MS.gene026233:CDS
GCACCAGTTACATGTCAAGA+TGG 0.588578 1.1:-21889785 MS.gene026233:CDS
TCCAAGAAATATGAGTTACA+TGG 0.588608 1.1:-21889882 MS.gene026233:CDS
TGCTTCCATAGCATTGCTAT+CGG 0.591610 1.1:-21891158 MS.gene026233:CDS
AATTACTATGGGCAGCAGCA+TGG 0.593166 1.1:-21890715 MS.gene026233:CDS
CAAACAGGATGAATTACTAT+GGG 0.596430 1.1:-21890726 MS.gene026233:intron
TGTGTTTAGGTTGACCTAGT+GGG 0.596433 1.1:-21891514 MS.gene026233:intron
ATGTGTTTAGGTTGACCTAG+TGG 0.597174 1.1:-21891515 MS.gene026233:intron
TCAGCAGCAAGATCAGTGCC+TGG 0.597527 1.1:+21891202 None:intergenic
CAATGTCGTCTGCACCTCCA+AGG 0.603267 1.1:+21890654 None:intergenic
GCAACCCTAAAATGTAGTGA+TGG 0.604108 1.1:-21890141 MS.gene026233:CDS
AAGAAATATGAGTTACATGG+TGG 0.612793 1.1:-21889879 MS.gene026233:CDS
AACCAAAGAGTAACATGGAG+AGG 0.615946 1.1:-21891695 MS.gene026233:CDS
ACATATTGAATATTAGCCCA+TGG 0.620696 1.1:+21890219 None:intergenic
TGGAGGTGCAGACGACATTG+GGG 0.638482 1.1:-21890651 MS.gene026233:CDS
CTCCTAACCAAAGAGTAACA+TGG 0.639659 1.1:-21891700 MS.gene026233:CDS
AGAAATATGAGTTACATGGT+GGG 0.646567 1.1:-21889878 MS.gene026233:CDS
TAATGATGGCAAAGATGCTG+GGG 0.649436 1.1:-21891660 MS.gene026233:intron
CCAAAGAGTAACATGGAGAG+GGG 0.660046 1.1:-21891693 MS.gene026233:CDS
GGAGGTGCAGACGACATTGG+GGG 0.660734 1.1:-21890650 MS.gene026233:CDS
GCATTATCAGCCATAAAATG+GGG 0.676447 1.1:-21891367 MS.gene026233:CDS
TAGGAATGACTTCCAATTAG+GGG 0.678183 1.1:-21889669 MS.gene026233:CDS
AAAATGTGGAGAAAACACCA+GGG 0.679917 1.1:-21890260 MS.gene026233:CDS
AAAGTATTTAGCCAAGTCTG+TGG 0.682056 1.1:+21890682 None:intergenic
GTTTAGGTTGACCTAGTGGG+TGG 0.704871 1.1:-21891511 MS.gene026233:intron
TCAATGTTGGGAAAGACCAG+AGG 0.708463 1.1:-21891269 MS.gene026233:CDS
AAATGTGGAGAAAACACCAG+GGG 0.723138 1.1:-21890259 MS.gene026233:CDS
AATGTGGAGAAAACACCAGG+GGG 0.763409 1.1:-21890258 MS.gene026233:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATAATATATTTGTTTA+GGG - chr1.1:21890975-21890994 MS.gene026233:intron 10.0%
!! TAGAAATAATATATTTGTTT+AGG - chr1.1:21890974-21890993 MS.gene026233:intron 10.0%
!!! ATTAATTTTTTTAGTAATTG+TGG + chr1.1:21890669-21890688 None:intergenic 10.0%
!!! TTTAATTTATACATTCAAAT+TGG + chr1.1:21891382-21891401 None:intergenic 10.0%
!!! TTTTAATTAATCCATTTTTT+TGG - chr1.1:21891510-21891529 MS.gene026233:intron 10.0%
!!! TTTTTTTAAAGAAATTTACA+AGG - chr1.1:21890911-21890930 MS.gene026233:CDS 10.0%
!! ATTTATACATACATGAAAAT+TGG - chr1.1:21890687-21890706 MS.gene026233:CDS 15.0%
!! TTTATACATACATGAAAATT+GGG - chr1.1:21890688-21890707 MS.gene026233:CDS 15.0%
!!! ACTTAAATTTTCCATTATAT+TGG - chr1.1:21891060-21891079 MS.gene026233:intron 15.0%
!!! AGTTTATAAGTTTTCTTTTT+TGG - chr1.1:21890436-21890455 MS.gene026233:intron 15.0%
!!! CTTAAATTTTCCATTATATT+GGG - chr1.1:21891061-21891080 MS.gene026233:intron 15.0%
!!! GCAAACAAATTTTTTTTTTT+AGG + chr1.1:21891039-21891058 None:intergenic 15.0%
!! AAATTTGAATGTTTGTCAAA+AGG + chr1.1:21891492-21891511 None:intergenic 20.0%
!! ATTTCTCCATATAAAATGTT+TGG + chr1.1:21890139-21890158 None:intergenic 20.0%
!! CTAAAATGTTACCAAAAAAA+TGG + chr1.1:21891524-21891543 None:intergenic 20.0%
!! TAACTTTCTTATATGTGTTT+AGG - chr1.1:21889922-21889941 MS.gene026233:intron 20.0%
!!! AAAAAGTTTGTTGTTTTTTG+AGG - chr1.1:21889705-21889724 MS.gene026233:CDS 20.0%
!!! AAAAGTTTGTTGTTTTTTGA+GGG - chr1.1:21889706-21889725 MS.gene026233:CDS 20.0%
!!! AACATTTTATATGGAGAAAT+TGG - chr1.1:21890139-21890158 MS.gene026233:CDS 20.0%
!!! CATTTTTTTGGTAACATTTT+AGG - chr1.1:21891522-21891541 MS.gene026233:intron 20.0%
!!! GCATTTTCATTATAAAATGA+AGG + chr1.1:21889847-21889866 None:intergenic 20.0%
! TAATGCATTTGTATACTCAT+TGG + chr1.1:21890068-21890087 None:intergenic 25.0%
! TCAAAAATCAACCAAAAATG+TGG - chr1.1:21891175-21891194 MS.gene026233:CDS 25.0%
! TGTAAGATCAATGTTTAGTT+GGG - chr1.1:21890822-21890841 MS.gene026233:intron 25.0%
! TTTATTATGGTTTCAACCAT+GGG - chr1.1:21891214-21891233 MS.gene026233:CDS 25.0%
!! ATGATGATTTTACTGATAGT+AGG - chr1.1:21891761-21891780 MS.gene026233:CDS 25.0%
!!! CATGAAAATTGGGAATTTTT+TGG - chr1.1:21890698-21890717 MS.gene026233:CDS 25.0%
!!! TTTTTTGGTAACATTTTAGG+TGG - chr1.1:21891525-21891544 MS.gene026233:intron 25.0%
AAATACTTTGATTACCTTGG+AGG - chr1.1:21890781-21890800 MS.gene026233:intron 30.0%
AAGAAATATGAGTTACATGG+TGG - chr1.1:21891570-21891589 MS.gene026233:intron 30.0%
ACAAACAGGATGAATTACTA+TGG - chr1.1:21890722-21890741 MS.gene026233:CDS 30.0%
ACATATTGAATATTAGCCCA+TGG + chr1.1:21891233-21891252 None:intergenic 30.0%
ACCATGTAACTCATATTTCT+TGG + chr1.1:21891571-21891590 None:intergenic 30.0%
ACTGCTCCTTCTAATATATT+AGG + chr1.1:21891724-21891743 None:intergenic 30.0%
AGAAATATGAGTTACATGGT+GGG - chr1.1:21891571-21891590 MS.gene026233:intron 30.0%
ATGCATTATCAGCCATAAAA+TGG - chr1.1:21890080-21890099 MS.gene026233:intron 30.0%
ATGTTCTTCATCGATCTTAT+AGG + chr1.1:21890227-21890246 None:intergenic 30.0%
ATTGTTATGGTAAATGCCAT+TGG + chr1.1:21890001-21890020 None:intergenic 30.0%
CAAACAGGATGAATTACTAT+GGG - chr1.1:21890723-21890742 MS.gene026233:intron 30.0%
CCAAACCCTAATATATTAGA+AGG - chr1.1:21891715-21891734 MS.gene026233:CDS 30.0%
CCATATAAAATGTTTGGTTG+TGG + chr1.1:21890133-21890152 None:intergenic 30.0%
CCTTCTAATATATTAGGGTT+TGG + chr1.1:21891718-21891737 None:intergenic 30.0%
CTGCTCCTTCTAATATATTA+GGG + chr1.1:21891723-21891742 None:intergenic 30.0%
GAATCAGAGAAAAACAACAA+AGG + chr1.1:21889648-21889667 None:intergenic 30.0%
GCTAAATACTTTGATTACCT+TGG - chr1.1:21890778-21890797 MS.gene026233:intron 30.0%
GTGTAAGATCAATGTTTAGT+TGG - chr1.1:21890821-21890840 MS.gene026233:intron 30.0%
GTTTATTATGGTTTCAACCA+TGG - chr1.1:21891213-21891232 MS.gene026233:CDS 30.0%
TAAAATGAAGGAGAAGTCAA+AGG + chr1.1:21889835-21889854 None:intergenic 30.0%
TCCAAGAAATATGAGTTACA+TGG - chr1.1:21891567-21891586 MS.gene026233:intron 30.0%
TCGATCTTATAGGAATTTCT+AGG + chr1.1:21890217-21890236 None:intergenic 30.0%
TGCATTATCAGCCATAAAAT+GGG - chr1.1:21890081-21890100 MS.gene026233:intron 30.0%
TTACCATAACAATGCTATCA+TGG - chr1.1:21890008-21890027 MS.gene026233:intron 30.0%
TTGTATTCAGTCCAAATCTT+TGG + chr1.1:21891122-21891141 None:intergenic 30.0%
! ATCACCATCACTACATTTTA+GGG + chr1.1:21891315-21891334 None:intergenic 30.0%
! CAAAAGTATATTCCAGTAGT+GGG - chr1.1:21890547-21890566 MS.gene026233:intron 30.0%
! CCACAACCAAACATTTTATA+TGG - chr1.1:21890130-21890149 MS.gene026233:CDS 30.0%
! TTTGAAGTTAGGATTTCCAA+TGG - chr1.1:21889982-21890001 MS.gene026233:intron 30.0%
!! AATGTTACTTGTGCTGATTA+TGG - chr1.1:21889670-21889689 MS.gene026233:CDS 30.0%
AAAAATGTGGAGAAAACACC+AGG - chr1.1:21891188-21891207 MS.gene026233:CDS 35.0%
AAAATGTGGAGAAAACACCA+GGG - chr1.1:21891189-21891208 MS.gene026233:CDS 35.0%
AGTAGGAATGACTTCCAATT+AGG - chr1.1:21891778-21891797 MS.gene026233:CDS 35.0%
ATACCATCTTGACATGTAAC+TGG + chr1.1:21891670-21891689 None:intergenic 35.0%
CCACAACAAATTCATCATAG+AGG - chr1.1:21891610-21891629 MS.gene026233:intron 35.0%
GACTTTGCAAACAATTCTAG+AGG - chr1.1:21890495-21890514 MS.gene026233:intron 35.0%
GCATTATCAGCCATAAAATG+GGG - chr1.1:21890082-21890101 MS.gene026233:intron 35.0%
GTAGGAATGACTTCCAATTA+GGG - chr1.1:21891779-21891798 MS.gene026233:CDS 35.0%
GTCAAGATGGTATTCAGAAA+TGG - chr1.1:21891677-21891696 MS.gene026233:CDS 35.0%
TAAGCAAGAACACCAACTAA+AGG + chr1.1:21891829-21891848 None:intergenic 35.0%
TAGGAATGACTTCCAATTAG+GGG - chr1.1:21891780-21891799 MS.gene026233:CDS 35.0%
TGATTCAGACCATCAATGTT+GGG - chr1.1:21890168-21890187 MS.gene026233:CDS 35.0%
TGCACAAATTCTTGTTGCAA+GGG - chr1.1:21890861-21890880 MS.gene026233:intron 35.0%
TTAATGATGGCAAAGATGCT+GGG - chr1.1:21889788-21889807 MS.gene026233:CDS 35.0%
TTCTACTGCTACATTTGCAA+TGG - chr1.1:21891253-21891272 MS.gene026233:CDS 35.0%
TTGAGAACATTTAGTTGCCA+TGG - chr1.1:21890627-21890646 MS.gene026233:CDS 35.0%
! AAAGTATTTAGCCAAGTCTG+TGG + chr1.1:21890770-21890789 None:intergenic 35.0%
! AATATACTTTTGCTGCTGGT+GGG + chr1.1:21890539-21890558 None:intergenic 35.0%
! CATCACCATCACTACATTTT+AGG + chr1.1:21891316-21891335 None:intergenic 35.0%
! GCAAAAGTATATTCCAGTAG+TGG - chr1.1:21890546-21890565 MS.gene026233:intron 35.0%
! TGGTGTTTTCTCCACATTTT+TGG + chr1.1:21891189-21891208 None:intergenic 35.0%
! TGTTGCAAGGGTATATTTCT+TGG - chr1.1:21890873-21890892 MS.gene026233:intron 35.0%
!! ATATTCCAGTAGTGGGTTTA+AGG - chr1.1:21890554-21890573 MS.gene026233:intron 35.0%
!! CCTCTATGATGAATTTGTTG+TGG + chr1.1:21891613-21891632 None:intergenic 35.0%
!!! ATTTTAGGTGGACTACATCT+TGG - chr1.1:21891537-21891556 MS.gene026233:intron 35.0%
!!! GGGAATTTTTTGGTACAAAC+AGG - chr1.1:21890708-21890727 MS.gene026233:CDS 35.0%
!!! GTTTGTTTTAGGTTGGAAAG+AGG - chr1.1:21891091-21891110 MS.gene026233:intron 35.0%
!!! TTTTAGGTGGACTACATCTT+GGG - chr1.1:21891538-21891557 MS.gene026233:intron 35.0%
AAACACCAGGGGGTTTATTA+TGG - chr1.1:21891201-21891220 MS.gene026233:CDS 40.0%
AAATGTGGAGAAAACACCAG+GGG - chr1.1:21891190-21891209 MS.gene026233:CDS 40.0%
AACCAAAGAGTAACATGGAG+AGG - chr1.1:21889754-21889773 MS.gene026233:CDS 40.0%
AACTGCATGGCCCAATATAA+TGG + chr1.1:21891074-21891093 None:intergenic 40.0%
AAGAGGAGTCTCCAAAGATT+TGG - chr1.1:21891108-21891127 MS.gene026233:intron 40.0%
AAGATCGATGAAGAACATCC+AGG - chr1.1:21890229-21890248 MS.gene026233:CDS 40.0%
ACAAGAGATGTGAGATCAGA+AGG + chr1.1:21891344-21891363 None:intergenic 40.0%
ACCAAAGAGTAACATGGAGA+GGG - chr1.1:21889755-21889774 MS.gene026233:CDS 40.0%
ACTTCTGTTGCACCTTTAGT+TGG - chr1.1:21891814-21891833 MS.gene026233:CDS 40.0%
AGTTGGGATGACAAGTATGT+TGG - chr1.1:21890838-21890857 MS.gene026233:intron 40.0%
ATGGAGCACAATAGAGTTCA+AGG - chr1.1:21890027-21890046 MS.gene026233:intron 40.0%
CATGTTACTCTTTGGTTAGG+AGG + chr1.1:21889751-21889770 None:intergenic 40.0%
CCAACCTAAAACAAACTGCA+TGG + chr1.1:21891087-21891106 None:intergenic 40.0%
CTCCATGTTACTCTTTGGTT+AGG + chr1.1:21889754-21889773 None:intergenic 40.0%
CTCCTAACCAAAGAGTAACA+TGG - chr1.1:21889749-21889768 MS.gene026233:CDS 40.0%
CTGATTCAGACCATCAATGT+TGG - chr1.1:21890167-21890186 MS.gene026233:CDS 40.0%
CTTAATGATGGCAAAGATGC+TGG - chr1.1:21889787-21889806 MS.gene026233:CDS 40.0%
GCAACCCTAAAATGTAGTGA+TGG - chr1.1:21891308-21891327 MS.gene026233:CDS 40.0%
GCAATCATGCAAAGCAAGTA+TGG - chr1.1:21890341-21890360 MS.gene026233:CDS 40.0%
GCTCCATGATAGCATTGTTA+TGG + chr1.1:21890014-21890033 None:intergenic 40.0%
GTGCACAAATTCTTGTTGCA+AGG - chr1.1:21890860-21890879 MS.gene026233:intron 40.0%
GTTGCCAATCATTGTAACCA+TGG + chr1.1:21890647-21890666 None:intergenic 40.0%
GTTGCCATGGTTACAATGAT+TGG - chr1.1:21890640-21890659 MS.gene026233:CDS 40.0%
TAATGATGGCAAAGATGCTG+GGG - chr1.1:21889789-21889808 MS.gene026233:CDS 40.0%
TGAAACCATAATAAACCCCC+TGG + chr1.1:21891209-21891228 None:intergenic 40.0%
TGCTTCCATAGCATTGCTAT+CGG - chr1.1:21890291-21890310 MS.gene026233:CDS 40.0%
! ATGAGTTACATGGTGGGATA+TGG - chr1.1:21891577-21891596 MS.gene026233:intron 40.0%
! CAACATTGATGGTCTGAATC+AGG + chr1.1:21890169-21890188 None:intergenic 40.0%
! CTGGAATATACTTTTGCTGC+TGG + chr1.1:21890543-21890562 None:intergenic 40.0%
! GAATATACTTTTGCTGCTGG+TGG + chr1.1:21890540-21890559 None:intergenic 40.0%
! GCTGGAGACAATTTGAAGTT+AGG - chr1.1:21889971-21889990 MS.gene026233:intron 40.0%
! GTAATCTGCTCCCCATTTTA+TGG + chr1.1:21890095-21890114 None:intergenic 40.0%
!! ATGTGTTTAGGTTGACCTAG+TGG - chr1.1:21889934-21889953 MS.gene026233:intron 40.0%
!! TGTGTTTAGGTTGACCTAGT+GGG - chr1.1:21889935-21889954 MS.gene026233:intron 40.0%
!!! CCATGCAGTTTGTTTTAGGT+TGG - chr1.1:21891084-21891103 MS.gene026233:intron 40.0%
!!! TTTTTTGAGGGACAACGTTC+AGG - chr1.1:21889718-21889737 MS.gene026233:CDS 40.0%
AATGTGGAGAAAACACCAGG+GGG - chr1.1:21891191-21891210 MS.gene026233:CDS 45.0%
AATTACTATGGGCAGCAGCA+TGG - chr1.1:21890734-21890753 MS.gene026233:intron 45.0%
CACATCTCTTGTTCAAGCTC+AGG - chr1.1:21891352-21891371 MS.gene026233:CDS 45.0%
CATCATAGTATCCACCCACT+AGG + chr1.1:21889952-21889971 None:intergenic 45.0%
CCAAAGAGTAACATGGAGAG+GGG - chr1.1:21889756-21889775 MS.gene026233:CDS 45.0%
GATCACCTTAAACCCACTAC+TGG + chr1.1:21890562-21890581 None:intergenic 45.0%
GCACCAGTTACATGTCAAGA+TGG - chr1.1:21891664-21891683 MS.gene026233:CDS 45.0%
GGGGATTCTGCACTTAATGA+TGG - chr1.1:21889775-21889794 MS.gene026233:CDS 45.0%
GGTGCAACAGAAGTAGTAGT+TGG + chr1.1:21891808-21891827 None:intergenic 45.0%
TCAATGTTGGGAAAGACCAG+AGG - chr1.1:21890180-21890199 MS.gene026233:CDS 45.0%
TCCATAGCATTGCTATCGGA+GGG - chr1.1:21890295-21890314 MS.gene026233:CDS 45.0%
TTCCATAGCATTGCTATCGG+AGG - chr1.1:21890294-21890313 MS.gene026233:CDS 45.0%
! CTGGTCTTTCCCAACATTGA+TGG + chr1.1:21890180-21890199 None:intergenic 45.0%
! TAGTAGTTGGCTCCCCTAAT+TGG + chr1.1:21891795-21891814 None:intergenic 45.0%
!! CTAGGTGTTGACATATCCTC+TGG + chr1.1:21890199-21890218 None:intergenic 45.0%
!! TGGGCCATGCAGTTTGTTTT+AGG - chr1.1:21891080-21891099 MS.gene026233:intron 45.0%
CCCCTCTCCATGTTACTCTT+TGG + chr1.1:21889759-21889778 None:intergenic 50.0%
CTGCTGGTGGGATACTATCA+TGG + chr1.1:21890527-21890546 None:intergenic 50.0%
GCTTTATAGGGCCACAGACT+TGG - chr1.1:21890756-21890775 MS.gene026233:intron 50.0%
GTGGGTGGATACTATGATGC+TGG - chr1.1:21889953-21889972 MS.gene026233:intron 50.0%
! TGCTGAAACTGCTGCTGCTT+TGG - chr1.1:21890264-21890283 MS.gene026233:CDS 50.0%
! TTGGAGGTGCAGACGACATT+GGG - chr1.1:21890797-21890816 MS.gene026233:intron 50.0%
!! GGCAGCAGCATGGCTTTATA+GGG - chr1.1:21890744-21890763 MS.gene026233:intron 50.0%
!! GTTTAGGTTGACCTAGTGGG+TGG - chr1.1:21889938-21889957 MS.gene026233:intron 50.0%
AGCATTGCTATCGGAGGGCT+CGG - chr1.1:21890300-21890319 MS.gene026233:CDS 55.0%
CAATGTCGTCTGCACCTCCA+AGG + chr1.1:21890798-21890817 None:intergenic 55.0%
GCCCTCCGATAGCAATGCTA+TGG + chr1.1:21890299-21890318 None:intergenic 55.0%
TCAGCAGCAAGATCAGTGCC+TGG + chr1.1:21890250-21890269 None:intergenic 55.0%
! CTTGGAGGTGCAGACGACAT+TGG - chr1.1:21890796-21890815 MS.gene026233:intron 55.0%
! TGGAGGTGCAGACGACATTG+GGG - chr1.1:21890798-21890817 MS.gene026233:intron 55.0%
!! GGGCAGCAGCATGGCTTTAT+AGG - chr1.1:21890743-21890762 MS.gene026233:intron 55.0%
! GGAGGTGCAGACGACATTGG+GGG - chr1.1:21890799-21890818 MS.gene026233:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 21889613 21891858 21889613 ID=MS.gene026233
chr1.1 mRNA 21889613 21891858 21889613 ID=MS.gene026233.t1;Parent=MS.gene026233
chr1.1 exon 21891661 21891858 21891661 ID=MS.gene026233.t1.exon1;Parent=MS.gene026233.t1
chr1.1 CDS 21891661 21891858 21891661 ID=cds.MS.gene026233.t1;Parent=MS.gene026233.t1
chr1.1 exon 21891114 21891527 21891114 ID=MS.gene026233.t1.exon2;Parent=MS.gene026233.t1
chr1.1 CDS 21891114 21891527 21891114 ID=cds.MS.gene026233.t1;Parent=MS.gene026233.t1
chr1.1 exon 21890896 21890982 21890896 ID=MS.gene026233.t1.exon3;Parent=MS.gene026233.t1
chr1.1 CDS 21890896 21890982 21890896 ID=cds.MS.gene026233.t1;Parent=MS.gene026233.t1
chr1.1 exon 21890589 21890741 21890589 ID=MS.gene026233.t1.exon4;Parent=MS.gene026233.t1
chr1.1 CDS 21890589 21890741 21890589 ID=cds.MS.gene026233.t1;Parent=MS.gene026233.t1
chr1.1 exon 21890098 21890379 21890098 ID=MS.gene026233.t1.exon5;Parent=MS.gene026233.t1
chr1.1 CDS 21890098 21890379 21890098 ID=cds.MS.gene026233.t1;Parent=MS.gene026233.t1
chr1.1 exon 21889613 21889927 21889613 ID=MS.gene026233.t1.exon6;Parent=MS.gene026233.t1
chr1.1 CDS 21889613 21889927 21889613 ID=cds.MS.gene026233.t1;Parent=MS.gene026233.t1
Gene Sequence

>MS.gene026233

ATGTCACTAAACAATATTTTCATTTTCATTCTCCTTTGTTGTTTTTCTCTGATTCATAATGTTACTTGTGCTGATTATGGAACAGCACTCACAAAAAGTTTGTTGTTTTTTGAGGGACAACGTTCAGGTGTGTTGCCTCCTAACCAAAGAGTAACATGGAGAGGGGATTCTGCACTTAATGATGGCAAAGATGCTGGGGTAAATTACTATTTTTTTACTCCTTTGACTTCTCCTTCATTTTATAATGAAAATGCTTATGATATATATATATATATATATATATATATATATATATTATTAGACAAATTATAACTTTCTTATATGTGTTTAGGTTGACCTAGTGGGTGGATACTATGATGCTGGAGACAATTTGAAGTTAGGATTTCCAATGGCATTTACCATAACAATGCTATCATGGAGCACAATAGAGTTCAAGGACAAACTTGAAAAAACCAATGAGTATACAAATGCATTATCAGCCATAAAATGGGGAGCAGATTACTTGATGAAAGCACATCCACAACCAAACATTTTATATGGAGAAATTGGTGATCCTGATTCAGACCATCAATGTTGGGAAAGACCAGAGGATATGTCAACACCTAGAAATTCCTATAAGATCGATGAAGAACATCCAGGCACTGATCTTGCTGCTGAAACTGCTGCTGCTTTGGCTGCTGCTTCCATAGCATTGCTATCGGAGGGCTCGGATTATGTAATCTCATTGCGCAATCATGCAAAGCAAGTATGGTTTTATTTTTGTAAAAATTATTTGTTTTTTACAAATCAAAAAGTATATTATTACAAATAAGAAATAAAATATAGTTTATAAGTTTTCTTTTTTGGTGAAAATTTCTAATTTAGTTTCTCTTGCAGCTTTTTGACTTTGCAAACAATTCTAGAGGCTTATACCATGATAGTATCCCACCAGCAGCAAAAGTATATTCCAGTAGTGGGTTTAAGGTGATCTACTTATATCTTTTGAAATTTTGTTTCAATATACTAAACAATGATTTGAGAACATTTAGTTGCCATGGTTACAATGATTGGCAACCACAATTACTAAAAAAATTAATTTATACATACATGAAAATTGGGAATTTTTTGGTACAAACAGGATGAATTACTATGGGCAGCAGCATGGCTTTATAGGGCCACAGACTTGGCTAAATACTTTGATTACCTTGGAGGTGCAGACGACATTGGGGGTGTAAGATCAATGTTTAGTTGGGATGACAAGTATGTTGGTGCACAAATTCTTGTTGCAAGGGTATATTTCTTGGTGCACAATTACTTTTTTTTTTTAAAGAAATTTACAAGGTGATGATTTTAAATTTTTTTATATAGATAATAAAGTAATTTAGAAATAATATATTTGTTTAGGGTTTGCTACACATCATTATGCAAAATTTGTTTGCTACTTCCTAAAAAAAAAAATTTGTTTGCTACTTAAATTTTCCATTATATTGGGCCATGCAGTTTGTTTTAGGTTGGAAAGAGGAGTCTCCAAAGATTTGGACTGAATACAAAGCAAATGCAGAAAACTTCATATGCTCATGTGCTCAAAAATCAACCAAAAATGTGGAGAAAACACCAGGGGGTTTATTATGGTTTCAACCATGGGCTAATATTCAATATGTTTCTACTGCTACATTTGCAATGGCTACTTATTCTAAATACTTGTCTAAAAAGCAAGCAACCCTAAAATGTAGTGATGGTGATGTTAGTCCTTCTGATCTCACATCTCTTGTTCAAGCTCAGGTAATCCAATTTGAATGTATAAATTAAAAGTGTGTATAGTAATATTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTACCTTTTGACAAACATTCAAATTTTTAATTAATCCATTTTTTTGGTAACATTTTAGGTGGACTACATCTTGGGTTCTAATCCAAGAAATATGAGTTACATGGTGGGATATGGATCAAATTATCCACAACAAATTCATCATAGAGGATCATCAATTGTATCAATCAAAAATGATAATGCACCAGTTACATGTCAAGATGGTATTCAGAAATGGTTCAATAAAAATGCACCAAACCCTAATATATTAGAAGGAGCAGTTGTGAGTTCAGATCAAAATGATGATTTTACTGATAGTAGGAATGACTTCCAATTAGGGGAGCCAACTACTACTTCTGTTGCACCTTTAGTTGGTGTTCTTGCTTATCTAGCCTAA
Protein sequence

>MS.gene026233.t1

MSLNNIFIFILLCCFSLIHNVTCADYGTALTKSLLFFEGQRSGVLPPNQRVTWRGDSALNDGKDAGVDLVGGYYDAGDNLKLGFPMAFTITMLSWSTIEFKDKLEKTNEYTNALSAIKWGADYLMKAHPQPNILYGEIGDPDSDHQCWERPEDMSTPRNSYKIDEEHPGTDLAAETAAALAAASIALLSEGSDYVISLRNHAKQLFDFANNSRGLYHDSIPPAAKVYSSSGFKDELLWAAAWLYRATDLAKYFDYLGGADDIGGVRSMFSWDDKYVGAQILVARFVLGWKEESPKIWTEYKANAENFICSCAQKSTKNVEKTPGGLLWFQPWANIQYVSTATFAMATYSKYLSKKQATLKCSDGDVSPSDLTSLVQAQVDYILGSNPRNMSYMVGYGSNYPQQIHHRGSSIVSIKNDNAPVTCQDGIQKWFNKNAPNPNILEGAVVSSDQNDDFTDSRNDFQLGEPTTTSVAPLVGVLAYLA