Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42640.t1 | QCE16349.1 | 58.5 | 831 | 197 | 10 | 140 | 835 | 28 | 845 | 1.80E-253 | 885.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42640.t1 | Q8VYG3 | 65.6 | 459 | 133 | 3 | 401 | 834 | 27 | 485 | 1.1e-177 | 625.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42640.t1 | A0A4D6NUZ0 | 58.5 | 831 | 197 | 10 | 140 | 835 | 28 | 845 | 1.3e-253 | 885.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42640.t1 | MTR_3g105230 | 91.904 | 457 | 13 | 2 | 404 | 836 | 27 | 483 | 0.0 | 879 |
MS.gene42640.t1 | MTR_3g023740 | 82.046 | 479 | 52 | 3 | 392 | 836 | 5 | 483 | 0.0 | 807 |
MS.gene42640.t1 | MTR_5g009970 | 46.256 | 454 | 217 | 5 | 406 | 832 | 40 | 493 | 8.27e-136 | 413 |
MS.gene42640.t1 | MTR_5g010000 | 45.788 | 463 | 224 | 5 | 397 | 832 | 30 | 492 | 1.73e-132 | 405 |
MS.gene42640.t1 | MTR_3g080190 | 42.975 | 484 | 236 | 6 | 393 | 836 | 26 | 509 | 4.81e-123 | 381 |
MS.gene42640.t1 | MTR_5g085730 | 42.500 | 480 | 236 | 7 | 393 | 832 | 17 | 496 | 6.19e-123 | 380 |
MS.gene42640.t1 | MTR_8g099410 | 43.923 | 469 | 223 | 7 | 404 | 833 | 25 | 492 | 3.59e-122 | 379 |
MS.gene42640.t1 | MTR_3g080810 | 43.601 | 461 | 219 | 9 | 407 | 830 | 35 | 491 | 1.40e-121 | 376 |
MS.gene42640.t1 | MTR_5g093590 | 42.127 | 489 | 240 | 6 | 388 | 835 | 17 | 503 | 1.13e-120 | 374 |
MS.gene42640.t1 | MTR_8g099410 | 43.923 | 469 | 223 | 7 | 404 | 833 | 25 | 492 | 4.95e-120 | 377 |
MS.gene42640.t1 | MTR_8g104820 | 41.775 | 462 | 228 | 9 | 407 | 830 | 30 | 488 | 1.17e-116 | 363 |
MS.gene42640.t1 | MTR_3g117500 | 42.151 | 465 | 230 | 9 | 403 | 830 | 20 | 482 | 2.04e-115 | 360 |
MS.gene42640.t1 | MTR_5g009970 | 44.686 | 414 | 202 | 5 | 446 | 832 | 6 | 419 | 1.35e-114 | 355 |
MS.gene42640.t1 | MTR_3g010330 | 41.215 | 461 | 233 | 6 | 407 | 833 | 25 | 481 | 3.76e-111 | 348 |
MS.gene42640.t1 | MTR_4g035975 | 42.887 | 471 | 220 | 12 | 407 | 834 | 27 | 491 | 4.45e-111 | 348 |
MS.gene42640.t1 | MTR_4g035955 | 41.575 | 457 | 230 | 7 | 406 | 830 | 13 | 464 | 6.21e-110 | 345 |
MS.gene42640.t1 | MTR_4g074960 | 41.438 | 473 | 235 | 9 | 402 | 834 | 24 | 494 | 1.89e-109 | 348 |
MS.gene42640.t1 | MTR_4g035930 | 40.130 | 461 | 237 | 7 | 403 | 830 | 11 | 465 | 3.69e-107 | 338 |
MS.gene42640.t1 | MTR_1g088190 | 42.117 | 463 | 210 | 9 | 407 | 833 | 39 | 479 | 3.96e-105 | 333 |
MS.gene42640.t1 | MTR_1g037340 | 41.739 | 460 | 233 | 6 | 407 | 833 | 25 | 482 | 3.78e-104 | 330 |
MS.gene42640.t1 | MTR_5g009970 | 43.112 | 392 | 196 | 5 | 468 | 832 | 1 | 392 | 2.74e-102 | 322 |
MS.gene42640.t1 | MTR_3g113720 | 38.593 | 469 | 240 | 9 | 408 | 834 | 58 | 520 | 1.35e-99 | 320 |
MS.gene42640.t1 | MTR_8g075990 | 36.966 | 468 | 249 | 9 | 408 | 834 | 64 | 526 | 5.43e-85 | 281 |
MS.gene42640.t1 | MTR_5g009970 | 44.753 | 324 | 166 | 4 | 522 | 832 | 1 | 324 | 4.30e-84 | 272 |
MS.gene42640.t1 | MTR_2g028480 | 35.583 | 489 | 244 | 12 | 407 | 833 | 111 | 590 | 5.70e-78 | 265 |
MS.gene42640.t1 | MTR_1g015750 | 68.889 | 180 | 44 | 1 | 217 | 396 | 190 | 357 | 7.28e-75 | 249 |
MS.gene42640.t1 | MTR_1g015750 | 68.889 | 180 | 44 | 1 | 217 | 396 | 198 | 365 | 8.45e-75 | 249 |
MS.gene42640.t1 | MTR_3g090540 | 33.058 | 484 | 255 | 12 | 409 | 832 | 109 | 583 | 9.01e-72 | 247 |
MS.gene42640.t1 | MTR_3g082440 | 34.879 | 496 | 247 | 16 | 402 | 834 | 111 | 593 | 3.68e-71 | 246 |
MS.gene42640.t1 | MTR_1g088190 | 41.584 | 303 | 123 | 6 | 407 | 675 | 39 | 321 | 2.45e-57 | 200 |
MS.gene42640.t1 | MTR_1g015750 | 66.667 | 102 | 22 | 1 | 217 | 318 | 190 | 279 | 2.27e-38 | 145 |
MS.gene42640.t1 | MTR_1g111340 | 47.273 | 165 | 43 | 3 | 610 | 764 | 1 | 131 | 3.31e-37 | 136 |
MS.gene42640.t1 | MTR_7g108925 | 43.046 | 151 | 84 | 2 | 684 | 833 | 50 | 199 | 3.55e-35 | 134 |
MS.gene42640.t1 | MTR_0393s0050 | 41.791 | 134 | 77 | 1 | 683 | 815 | 26 | 159 | 6.96e-28 | 111 |
MS.gene42640.t1 | MTR_4g128810 | 26.478 | 423 | 202 | 16 | 420 | 834 | 14 | 335 | 1.32e-27 | 115 |
MS.gene42640.t1 | MTR_3g105240 | 40.722 | 194 | 67 | 6 | 151 | 308 | 36 | 217 | 2.31e-27 | 111 |
MS.gene42640.t1 | MTR_1g037320 | 38.220 | 191 | 101 | 2 | 468 | 641 | 1 | 191 | 1.84e-24 | 104 |
MS.gene42640.t1 | MTR_1g037320 | 41.803 | 122 | 69 | 2 | 710 | 830 | 169 | 289 | 5.39e-23 | 100 |
MS.gene42640.t1 | MTR_5g027970 | 30.303 | 165 | 85 | 6 | 222 | 375 | 632 | 777 | 6.63e-14 | 76.3 |
MS.gene42640.t1 | MTR_6g071360 | 31.579 | 152 | 79 | 5 | 256 | 392 | 703 | 844 | 6.62e-13 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42640.t1 | AT3G43860 | 64.668 | 467 | 140 | 3 | 393 | 834 | 19 | 485 | 0.0 | 622 |
MS.gene42640.t1 | AT3G43860 | 64.668 | 467 | 140 | 3 | 393 | 834 | 19 | 485 | 0.0 | 622 |
MS.gene42640.t1 | AT4G11050 | 45.011 | 471 | 219 | 7 | 403 | 834 | 22 | 491 | 1.19e-126 | 391 |
MS.gene42640.t1 | AT4G23560 | 46.137 | 466 | 223 | 6 | 396 | 834 | 12 | 476 | 7.55e-126 | 387 |
MS.gene42640.t1 | AT4G11050 | 45.011 | 471 | 219 | 7 | 403 | 834 | 22 | 491 | 1.06e-125 | 391 |
MS.gene42640.t1 | AT4G11050 | 45.011 | 471 | 219 | 7 | 403 | 834 | 22 | 491 | 1.10e-125 | 391 |
MS.gene42640.t1 | AT4G09740 | 45.923 | 466 | 224 | 6 | 396 | 834 | 12 | 476 | 3.48e-125 | 385 |
MS.gene42640.t1 | AT4G02290 | 44.206 | 466 | 222 | 7 | 403 | 833 | 48 | 510 | 1.97e-123 | 382 |
MS.gene42640.t1 | AT1G64390 | 44.325 | 467 | 220 | 7 | 407 | 834 | 25 | 490 | 2.58e-122 | 382 |
MS.gene42640.t1 | AT1G02800 | 45.022 | 462 | 214 | 8 | 407 | 833 | 43 | 499 | 5.94e-120 | 372 |
MS.gene42640.t1 | AT1G70710 | 42.245 | 490 | 240 | 11 | 383 | 834 | 3 | 487 | 1.54e-119 | 371 |
MS.gene42640.t1 | AT2G32990 | 43.497 | 469 | 225 | 6 | 403 | 831 | 35 | 503 | 2.46e-119 | 371 |
MS.gene42640.t1 | AT1G23210 | 42.457 | 464 | 227 | 9 | 407 | 834 | 28 | 487 | 7.52e-116 | 361 |
MS.gene42640.t1 | AT1G71380 | 41.522 | 460 | 234 | 8 | 407 | 834 | 24 | 480 | 2.96e-111 | 349 |
MS.gene42640.t1 | AT1G22880 | 41.304 | 460 | 235 | 8 | 407 | 834 | 24 | 480 | 7.51e-110 | 345 |
MS.gene42640.t1 | AT2G44550 | 42.232 | 457 | 229 | 7 | 407 | 830 | 33 | 487 | 2.47e-109 | 344 |
MS.gene42640.t1 | AT4G39010 | 40.171 | 468 | 240 | 9 | 405 | 834 | 27 | 492 | 1.06e-106 | 337 |
MS.gene42640.t1 | AT2G44540 | 41.957 | 460 | 231 | 7 | 407 | 832 | 33 | 490 | 1.57e-106 | 337 |
MS.gene42640.t1 | AT2G44560 | 41.501 | 453 | 228 | 8 | 393 | 811 | 20 | 469 | 7.91e-104 | 330 |
MS.gene42640.t1 | AT1G19940 | 40.821 | 463 | 222 | 9 | 407 | 827 | 48 | 500 | 1.03e-103 | 330 |
MS.gene42640.t1 | AT1G19940 | 40.821 | 463 | 222 | 9 | 407 | 827 | 48 | 500 | 1.03e-103 | 330 |
MS.gene42640.t1 | AT2G44570 | 41.126 | 462 | 235 | 8 | 407 | 833 | 33 | 492 | 4.07e-101 | 323 |
MS.gene42640.t1 | AT1G48930 | 40.645 | 465 | 236 | 7 | 406 | 831 | 29 | 492 | 1.09e-100 | 326 |
MS.gene42640.t1 | AT4G39000 | 37.554 | 466 | 251 | 7 | 407 | 834 | 25 | 488 | 8.44e-98 | 314 |
MS.gene42640.t1 | AT1G75680 | 40.969 | 454 | 224 | 10 | 408 | 823 | 58 | 505 | 1.71e-96 | 311 |
MS.gene42640.t1 | AT4G38990 | 38.116 | 467 | 244 | 10 | 407 | 830 | 23 | 487 | 8.11e-94 | 303 |
MS.gene42640.t1 | AT4G02290 | 41.397 | 401 | 197 | 7 | 468 | 833 | 1 | 398 | 5.38e-91 | 293 |
MS.gene42640.t1 | AT1G22880 | 38.596 | 399 | 210 | 8 | 468 | 834 | 1 | 396 | 1.35e-83 | 273 |
MS.gene42640.t1 | AT4G39010 | 37.669 | 369 | 192 | 7 | 400 | 731 | 22 | 389 | 3.49e-79 | 261 |
MS.gene42640.t1 | AT2G26300 | 62.857 | 210 | 49 | 4 | 200 | 396 | 163 | 356 | 1.03e-77 | 257 |
MS.gene42640.t1 | AT2G26300 | 62.857 | 210 | 49 | 4 | 200 | 396 | 163 | 356 | 1.03e-77 | 257 |
MS.gene42640.t1 | AT5G49720 | 35.787 | 489 | 243 | 13 | 407 | 833 | 108 | 587 | 1.39e-77 | 264 |
MS.gene42640.t1 | AT1G19940 | 38.798 | 366 | 176 | 7 | 407 | 730 | 48 | 407 | 1.55e-71 | 241 |
MS.gene42640.t1 | AT4G24260 | 35.714 | 490 | 242 | 14 | 407 | 833 | 108 | 587 | 4.41e-70 | 243 |
MS.gene42640.t1 | AT2G44570 | 40.111 | 359 | 177 | 8 | 407 | 730 | 33 | 388 | 3.46e-69 | 234 |
MS.gene42640.t1 | AT1G65610 | 34.469 | 499 | 252 | 18 | 400 | 836 | 109 | 594 | 3.83e-67 | 235 |
MS.gene42640.t1 | AT1G22880 | 42.955 | 291 | 133 | 6 | 407 | 666 | 24 | 312 | 2.08e-63 | 217 |
MS.gene42640.t1 | AT4G38990 | 36.310 | 336 | 159 | 7 | 407 | 709 | 23 | 336 | 9.85e-55 | 193 |
MS.gene42640.t1 | AT4G24260 | 32.817 | 387 | 191 | 12 | 407 | 730 | 108 | 488 | 3.43e-41 | 158 |
MS.gene42640.t1 | AT4G24260 | 37.786 | 262 | 124 | 7 | 407 | 633 | 108 | 365 | 1.77e-38 | 150 |
MS.gene42640.t1 | AT1G31930 | 33.533 | 167 | 89 | 6 | 242 | 392 | 652 | 812 | 4.24e-15 | 80.1 |
MS.gene42640.t1 | AT1G31930 | 33.533 | 167 | 89 | 6 | 242 | 392 | 652 | 812 | 4.24e-15 | 80.1 |
MS.gene42640.t1 | AT1G31930 | 33.533 | 167 | 89 | 6 | 242 | 392 | 652 | 812 | 4.24e-15 | 80.1 |
MS.gene42640.t1 | AT1G31930 | 33.533 | 167 | 89 | 6 | 242 | 392 | 652 | 812 | 4.24e-15 | 80.1 |
MS.gene42640.t1 | AT1G31930 | 33.533 | 167 | 89 | 6 | 242 | 392 | 652 | 812 | 4.24e-15 | 80.1 |
MS.gene42640.t1 | AT1G31930 | 33.533 | 167 | 89 | 6 | 242 | 392 | 652 | 812 | 4.24e-15 | 80.1 |
Find 194 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAGCAAAGCTTGCTTCTT+TGG | 0.183970 | 3.4:-92062322 | MS.gene42640:CDS |
CTCCAAGGAACCCTGTTATT+TGG | 0.186545 | 3.4:+92064504 | None:intergenic |
ACCATGTATGATCTTCCTTC+TGG | 0.191808 | 3.4:+92062594 | None:intergenic |
CCTTTCTATTGCTCCTATTC+AGG | 0.238466 | 3.4:-92063669 | MS.gene42640:CDS |
TAACAGATGGATTACATATT+GGG | 0.264521 | 3.4:-92062624 | MS.gene42640:intron |
TACCAGGAGACAAATGTATT+TGG | 0.265919 | 3.4:+92063267 | None:intergenic |
AGCAGAAGATTGATGGTAAA+TGG | 0.278811 | 3.4:-92069394 | MS.gene42640:CDS |
CTAGCAAAGCTTGCTTCTTT+GGG | 0.282416 | 3.4:-92062321 | MS.gene42640:CDS |
GCAGGAGATAATGTGAAATA+TGG | 0.286093 | 3.4:-92064187 | MS.gene42640:CDS |
ATGCTCAATCTCTTGTTTCC+CGG | 0.299876 | 3.4:+92065782 | None:intergenic |
TTAACAGATGGATTACATAT+TGG | 0.314396 | 3.4:-92062625 | MS.gene42640:intron |
AAAATCCCTTATATTCTTAG+AGG | 0.322178 | 3.4:-92064550 | MS.gene42640:CDS |
CCATGTATGATCTTCCTTCT+GGG | 0.323883 | 3.4:+92062595 | None:intergenic |
TCTCCTCAACAAAGCAAAAT+TGG | 0.327119 | 3.4:-92063822 | MS.gene42640:intron |
CAGTAAGATATGAAATTAAA+TGG | 0.331173 | 3.4:+92066918 | None:intergenic |
CCAGTTAGCTCATGTGGATT+TGG | 0.335953 | 3.4:+92062450 | None:intergenic |
AGGGTGGTGGTGAGTGACAG+TGG | 0.336091 | 3.4:-92069827 | MS.gene42640:CDS |
GAAAACTCCCTCCAAATAAC+AGG | 0.336359 | 3.4:-92064515 | MS.gene42640:CDS |
TTTGTGCCTCTAAGAATATA+AGG | 0.344488 | 3.4:+92064544 | None:intergenic |
TGCGCTGCAATTAGCGAGTA+TGG | 0.351903 | 3.4:-92066945 | MS.gene42640:CDS |
CTAAGCATGTTGACCTGAAC+TGG | 0.352552 | 3.4:+92067278 | None:intergenic |
AGATAAATGAGAGGATAAAA+TGG | 0.354678 | 3.4:-92067004 | MS.gene42640:CDS |
GTCGATGACTCTTGCCTTCG+AGG | 0.356668 | 3.4:+92065934 | None:intergenic |
ATTTGAAGCAACAAAGGAAA+TGG | 0.364952 | 3.4:-92064104 | MS.gene42640:CDS |
CCAAATCCACATGAGCTAAC+TGG | 0.370400 | 3.4:-92062450 | MS.gene42640:CDS |
TCTTGTTTCCCGGTTGAAAC+TGG | 0.372145 | 3.4:+92065792 | None:intergenic |
GAATGGTGGTGAGGGGAGGG+TGG | 0.379697 | 3.4:-92069843 | MS.gene42640:CDS |
GTGAGTGACAGTGGTGGTGA+GGG | 0.379708 | 3.4:-92069818 | MS.gene42640:CDS |
TCGAAATGGCTGCAAAGAAA+TGG | 0.380962 | 3.4:-92062474 | MS.gene42640:CDS |
TGAATGTAGGTCGACCTATC+TGG | 0.385511 | 3.4:-92064223 | MS.gene42640:intron |
GATTTGGCAAAATCACATAA+AGG | 0.392643 | 3.4:-92063711 | MS.gene42640:CDS |
TGGTGGTGAGGGGAGGGTGG+TGG | 0.393894 | 3.4:-92069840 | MS.gene42640:CDS |
AGATCATACATGGTAGGATT+CGG | 0.394514 | 3.4:-92062585 | MS.gene42640:CDS |
ATTTGGTGGTAAGGACTATC+AGG | 0.398032 | 3.4:+92063284 | None:intergenic |
CACGGTCAGGAGCAGAGCTC+TGG | 0.398034 | 3.4:+92065594 | None:intergenic |
AATTATCAACCAGTTTCAAC+CGG | 0.404306 | 3.4:-92065801 | MS.gene42640:CDS |
GGGAAGGAGCAGAAGATTGA+TGG | 0.407263 | 3.4:-92069401 | MS.gene42640:CDS |
GTGAGTGATGGTGGTGGTGA+GGG | 0.410115 | 3.4:-92069422 | MS.gene42640:CDS |
TATGCAAGAGTTCGTGCAAC+TGG | 0.417027 | 3.4:-92067313 | MS.gene42640:intron |
GATCATACATGGTAGGATTC+GGG | 0.419888 | 3.4:-92062584 | MS.gene42640:CDS |
TCGAATTTGTCATTTATGTC+AGG | 0.420508 | 3.4:+92062411 | None:intergenic |
TTCAGCAAATGCAGTTAAAG+AGG | 0.422359 | 3.4:-92069268 | MS.gene42640:intron |
TATTCAAGATGCAATCAAAT+GGG | 0.427350 | 3.4:-92064077 | MS.gene42640:CDS |
TATGTGCAAGGTTCAGTCTT+AGG | 0.428923 | 3.4:+92062369 | None:intergenic |
GGTGAGTGACAGTGGTGGTG+AGG | 0.431892 | 3.4:-92069819 | MS.gene42640:CDS |
GATGGGAGGGAGCATGTGAT+TGG | 0.433038 | 3.4:-92069605 | MS.gene42640:CDS |
CTCCAAATAACAGGGTTCCT+TGG | 0.434846 | 3.4:-92064506 | MS.gene42640:CDS |
GGTGAGTGATGGTGGTGGTG+AGG | 0.439482 | 3.4:-92069423 | MS.gene42640:CDS |
GGAGAATGGTGGTGAGGGGA+GGG | 0.440823 | 3.4:-92069672 | MS.gene42640:CDS |
GGAGAATGGTGGTGAGGGGA+GGG | 0.440823 | 3.4:-92069759 | MS.gene42640:CDS |
TTCTTCTACAATCTTTAAGC+AGG | 0.441732 | 3.4:-92067926 | MS.gene42640:intron |
GAGCTAACTGGAGCCATTGT+AGG | 0.443297 | 3.4:-92062438 | MS.gene42640:CDS |
GACAAATGTATTTGGTGGTA+AGG | 0.445589 | 3.4:+92063275 | None:intergenic |
TTGTGCCTCTAAGAATATAA+GGG | 0.447754 | 3.4:+92064545 | None:intergenic |
GTCTCGTGGATATCCAGTTC+AGG | 0.449713 | 3.4:-92067291 | MS.gene42640:intron |
GAGCAGGAGAATGGTGGTGA+GGG | 0.450309 | 3.4:-92069677 | MS.gene42640:CDS |
GAGCAGGAGAATGGTGGTGA+GGG | 0.450309 | 3.4:-92069764 | MS.gene42640:CDS |
GGACAATTGATATCTTCGTT+TGG | 0.451331 | 3.4:+92062507 | None:intergenic |
TTCTGAAACGGCTGCTGCTA+TGG | 0.452071 | 3.4:-92063894 | MS.gene42640:CDS |
ACATACGTTATAGCCTGAAT+AGG | 0.452957 | 3.4:+92063656 | None:intergenic |
TGATGGTGGTGGTGAGGGGA+AGG | 0.453175 | 3.4:-92069417 | MS.gene42640:CDS |
CAGGTGATGGTGAGTGATGG+TGG | 0.454129 | 3.4:-92069431 | MS.gene42640:CDS |
AGAATGAGCAGGAGAATGAT+GGG | 0.459403 | 3.4:-92069574 | MS.gene42640:CDS |
AAATGGATCCATCTCTTTGA+AGG | 0.461550 | 3.4:-92066987 | MS.gene42640:CDS |
TCTTCGTTTGGTGACAACTT+TGG | 0.462848 | 3.4:+92062519 | None:intergenic |
AGGAGAATGGTGGTGAGGGG+AGG | 0.465935 | 3.4:-92069673 | MS.gene42640:CDS |
AGGAGAATGGTGGTGAGGGG+AGG | 0.465935 | 3.4:-92069760 | MS.gene42640:CDS |
TGGCAGTGGTGGTGATGGGA+GGG | 0.467369 | 3.4:-92069618 | MS.gene42640:CDS |
TCACATAAAGGAACATATGA+TGG | 0.468381 | 3.4:-92063699 | MS.gene42640:CDS |
TTCTTAGAGGCACAAAGATC+AGG | 0.468999 | 3.4:-92064537 | MS.gene42640:CDS |
ATATTCAAGATGCAATCAAA+TGG | 0.469316 | 3.4:-92064078 | MS.gene42640:CDS |
AGTTGATGATCATCATTGTT+GGG | 0.470055 | 3.4:-92063990 | MS.gene42640:CDS |
AGGGTGATGGTGAGTGACAG+TGG | 0.470293 | 3.4:-92069653 | MS.gene42640:CDS |
AGGGTGATGGTGAGTGACAG+TGG | 0.470293 | 3.4:-92069740 | MS.gene42640:CDS |
CTCCCCTCACCACCATTCTC+CGG | 0.474728 | 3.4:+92069848 | None:intergenic |
GAGAATGAGCAGGAGAATGA+TGG | 0.476231 | 3.4:-92069575 | MS.gene42640:CDS |
AAGATATGAAATTAAATGGC+AGG | 0.477483 | 3.4:+92066922 | None:intergenic |
TCACTGTGACTACATTATCA+TGG | 0.484072 | 3.4:-92064150 | MS.gene42640:CDS |
TTTGAAGCAACAAAGGAAAT+GGG | 0.485003 | 3.4:-92064103 | MS.gene42640:CDS |
TTCAGAAGCAATCTCACTAC+CGG | 0.492191 | 3.4:+92063910 | None:intergenic |
GGGATGGAGCATGTCGTTGA+TGG | 0.497162 | 3.4:-92069884 | MS.gene42640:CDS |
TCACAATAGGGCAGGTAGCT+AGG | 0.499943 | 3.4:+92065531 | None:intergenic |
GTCTATAGACTCTTTGATGT+TGG | 0.500114 | 3.4:-92067032 | MS.gene42640:CDS |
CGGAGAATGGTGGTGAGGGG+AGG | 0.500310 | 3.4:-92069847 | MS.gene42640:CDS |
CAGTTGATGATCATCATTGT+TGG | 0.500741 | 3.4:-92063991 | MS.gene42640:CDS |
TATGTTAATTCTCTTGCAGC+TGG | 0.501079 | 3.4:-92062348 | MS.gene42640:CDS |
CACCAAATACATTTGTCTCC+TGG | 0.502545 | 3.4:-92063269 | MS.gene42640:intron |
CAGGAGATAATGTGAAATAT+GGG | 0.502944 | 3.4:-92064186 | MS.gene42640:CDS |
GGAGAATGGTGGTGAGGGGA+GGG | 0.506045 | 3.4:-92069846 | MS.gene42640:CDS |
CCTGAATAGGAGCAATAGAA+AGG | 0.507839 | 3.4:+92063669 | None:intergenic |
CAAGGAACCCTGTTATTTGG+AGG | 0.510003 | 3.4:+92064507 | None:intergenic |
AAAACACGATCTACACGGTC+AGG | 0.513469 | 3.4:+92065581 | None:intergenic |
GTGATGGCAGTGGTGGTGAT+GGG | 0.515449 | 3.4:-92069622 | MS.gene42640:CDS |
GGGTCAATTTAATTATAAAG+AGG | 0.516477 | 3.4:-92064580 | MS.gene42640:CDS |
ATGGCAGTGGTGGTGATGGG+AGG | 0.516487 | 3.4:-92069619 | MS.gene42640:CDS |
CATCATAATATCCTCCAGAT+AGG | 0.517630 | 3.4:+92064209 | None:intergenic |
TGGTGGTGAGGGGAGGGTGA+TGG | 0.519531 | 3.4:-92069666 | MS.gene42640:CDS |
TGGTGGTGAGGGGAGGGTGA+TGG | 0.519531 | 3.4:-92069753 | MS.gene42640:CDS |
CAGCCATTTCGAAAAGCTCG+TGG | 0.520074 | 3.4:+92062485 | None:intergenic |
CTATGATGAGCTTGTGTGGG+TGG | 0.520571 | 3.4:+92062555 | None:intergenic |
TCTGGAGGATATTATGATGC+AGG | 0.520913 | 3.4:-92064205 | MS.gene42640:CDS |
ACCTCTATGATGAGCTTGTG+TGG | 0.521792 | 3.4:+92062551 | None:intergenic |
TATAGACTCTTTGATGTTGG+CGG | 0.523127 | 3.4:-92067029 | MS.gene42640:CDS |
GAGCCGGAGAATGGTGGTGA+GGG | 0.523754 | 3.4:-92069851 | MS.gene42640:CDS |
GAAGATTGATGGTAAATGGA+AGG | 0.524121 | 3.4:-92069390 | MS.gene42640:CDS |
GAGGAGAATGAGCAGGAGAA+TGG | 0.525424 | 3.4:-92069686 | MS.gene42640:CDS |
TGATGGTGAAGAGAATGAGC+AGG | 0.526015 | 3.4:-92069780 | MS.gene42640:CDS |
TAGTGAGATTGCTTCTGAAA+CGG | 0.528733 | 3.4:-92063906 | MS.gene42640:CDS |
GGGATGAAGCATGTGATTGA+TGG | 0.532712 | 3.4:-92069797 | MS.gene42640:CDS |
CTGTAACTCCTTCAAAGAGA+TGG | 0.533746 | 3.4:+92066979 | None:intergenic |
CATGTAGGATGAATTGTTGT+GGG | 0.533902 | 3.4:-92063513 | MS.gene42640:intron |
CCCAGAAGGAAGATCATACA+TGG | 0.534406 | 3.4:-92062595 | MS.gene42640:CDS |
TGACAGCAAGAACAGAATGA+TGG | 0.535189 | 3.4:-92066503 | MS.gene42640:CDS |
CAGGAGACAAATGTATTTGG+TGG | 0.535513 | 3.4:+92063270 | None:intergenic |
GGATTTATTCATATGAGAGA+TGG | 0.536941 | 3.4:-92063105 | MS.gene42640:CDS |
TGAGTGATGGTGGTGGTGAG+GGG | 0.538596 | 3.4:-92069421 | MS.gene42640:CDS |
CACTGTGACTACATTATCAT+GGG | 0.541514 | 3.4:-92064149 | MS.gene42640:CDS |
AATTGTTGTGGGCAGCAACT+TGG | 0.542150 | 3.4:-92063502 | MS.gene42640:CDS |
AGTGATGGCAGTGGTGGTGA+TGG | 0.543004 | 3.4:-92069623 | MS.gene42640:CDS |
CTGAATAGGAGCAATAGAAA+GGG | 0.546087 | 3.4:+92063670 | None:intergenic |
CTTGAAACATTTAAAGCACA+TGG | 0.547835 | 3.4:-92063332 | MS.gene42640:CDS |
AGCAGGAGAATGGTGGTGAG+GGG | 0.548557 | 3.4:-92069676 | MS.gene42640:CDS |
AGCAGGAGAATGGTGGTGAG+GGG | 0.548557 | 3.4:-92069763 | MS.gene42640:CDS |
TGAGCAGGAGAATGGTGGTG+AGG | 0.550200 | 3.4:-92069678 | MS.gene42640:CDS |
TGAGCAGGAGAATGGTGGTG+AGG | 0.550200 | 3.4:-92069765 | MS.gene42640:CDS |
GAAGAGAATGAGCAGGAGAA+TGG | 0.551775 | 3.4:-92069773 | MS.gene42640:CDS |
ATGGCTCCAGTTAGCTCATG+TGG | 0.553897 | 3.4:+92062444 | None:intergenic |
GGAGACTCGGCTGTCGATGA+CGG | 0.556596 | 3.4:-92064480 | MS.gene42640:CDS |
GCATGATGGAGCAAAGGAGT+TGG | 0.556929 | 3.4:-92067684 | MS.gene42640:CDS |
TGACAGTGGTGGCGAGAGGA+TGG | 0.559981 | 3.4:-92069726 | MS.gene42640:CDS |
GGCAGCAACTTGGTTATACA+TGG | 0.560142 | 3.4:-92063492 | MS.gene42640:CDS |
GCCGGTAGCATATTGTGTAT+TGG | 0.563729 | 3.4:+92063080 | None:intergenic |
TGGTGGCGAGGAGAATGAGC+AGG | 0.564076 | 3.4:-92069585 | MS.gene42640:CDS |
CCTCTATGATGAGCTTGTGT+GGG | 0.566191 | 3.4:+92062552 | None:intergenic |
AACAGAATTTGAAGCAACAA+AGG | 0.567677 | 3.4:-92064110 | MS.gene42640:CDS |
GAGGAGAATGAGCCGGAGAA+TGG | 0.568079 | 3.4:-92069860 | MS.gene42640:CDS |
TGAGTGACAGTGGTGGTGAG+GGG | 0.568222 | 3.4:-92069817 | MS.gene42640:CDS |
GCCAATACACAATATGCTAC+CGG | 0.569100 | 3.4:-92063081 | MS.gene42640:CDS |
TTGTTATTTGACAGCCCTGT+TGG | 0.572334 | 3.4:-92067077 | MS.gene42640:intron |
AGTTCGTGCAACTGGTCTCG+TGG | 0.575924 | 3.4:-92067305 | MS.gene42640:CDS |
GAGCAGGTGATGGTGAGTGA+TGG | 0.578806 | 3.4:-92069434 | MS.gene42640:intron |
AAGGAACCCTGTTATTTGGA+GGG | 0.579113 | 3.4:+92064508 | None:intergenic |
CCCACACAAGCTCATCATAG+AGG | 0.580704 | 3.4:-92062552 | MS.gene42640:CDS |
GTTGGAGAAAATAAGAGAAG+AGG | 0.582712 | 3.4:-92067059 | MS.gene42640:CDS |
TGATGGTGAGGAGAATGAGC+CGG | 0.584508 | 3.4:-92069867 | MS.gene42640:CDS |
GTAGTCACAGTGAATGCCAT+TGG | 0.585430 | 3.4:+92064160 | None:intergenic |
GGGAGGGAGCATGTGATTGG+TGG | 0.586588 | 3.4:-92069602 | MS.gene42640:CDS |
AACAGATGGATTACATATTG+GGG | 0.589442 | 3.4:-92062623 | MS.gene42640:intron |
GGAGCATGTGATTGGTGGCG+AGG | 0.596886 | 3.4:-92069597 | MS.gene42640:CDS |
TTATGAACTCACAATAGGGC+AGG | 0.597701 | 3.4:+92065523 | None:intergenic |
TGAGCAGGAGAATGATGGGA+AGG | 0.598755 | 3.4:-92069570 | MS.gene42640:CDS |
CTAACTGGAGCCATTGTAGG+TGG | 0.599511 | 3.4:-92062435 | MS.gene42640:CDS |
GGCGAGAGTGATGGCAGTGG+TGG | 0.601204 | 3.4:-92069629 | MS.gene42640:CDS |
ATTATCAACCAGTTTCAACC+GGG | 0.601466 | 3.4:-92065800 | MS.gene42640:CDS |
AGCCGGAGAATGGTGGTGAG+GGG | 0.606825 | 3.4:-92069850 | MS.gene42640:CDS |
TGATGGTGAGGAGAATGAGC+AGG | 0.607495 | 3.4:-92069693 | MS.gene42640:CDS |
GAAGGAAGATCATACATGGT+AGG | 0.609021 | 3.4:-92062591 | MS.gene42640:CDS |
TTTAAACAGGTACTGCATGA+TGG | 0.611891 | 3.4:-92067698 | MS.gene42640:intron |
GAGAATGAGCAGGAGAATGG+TGG | 0.615117 | 3.4:-92069683 | MS.gene42640:CDS |
GAGAATGAGCAGGAGAATGG+TGG | 0.615117 | 3.4:-92069770 | MS.gene42640:CDS |
AGTGAACAAGAAAGATGTGC+CGG | 0.615391 | 3.4:+92063062 | None:intergenic |
TATGTCAGGTCCACCTACAA+TGG | 0.616354 | 3.4:+92062425 | None:intergenic |
GGTTCCTTGGAGAGGAGACT+CGG | 0.618882 | 3.4:-92064493 | MS.gene42640:CDS |
GACAGTGGTGGCGAGAGTGA+TGG | 0.620165 | 3.4:-92069638 | MS.gene42640:CDS |
TGAGCCGGAGAATGGTGGTG+AGG | 0.621604 | 3.4:-92069852 | MS.gene42640:CDS |
GGTACTGCATGATGGAGCAA+AGG | 0.624025 | 3.4:-92067690 | MS.gene42640:CDS |
GTGATGGTGAGTGATGGTGG+TGG | 0.626115 | 3.4:-92069428 | MS.gene42640:CDS |
TGTGAAATATGGGTTACCAA+TGG | 0.626157 | 3.4:-92064176 | MS.gene42640:CDS |
TCATGTAGGATGAATTGTTG+TGG | 0.627857 | 3.4:-92063514 | MS.gene42640:intron |
AGAGAATTAACATATGTGCA+AGG | 0.635433 | 3.4:+92062357 | None:intergenic |
ACAGCCGAGTCTCCTCTCCA+AGG | 0.637628 | 3.4:+92064489 | None:intergenic |
GGAGCATGTCGTTGATGGTG+AGG | 0.643944 | 3.4:-92069879 | MS.gene42640:CDS |
TCAGAAGCAATCTCACTACC+GGG | 0.644101 | 3.4:+92063911 | None:intergenic |
GTGGTGGTGAGTGACAGTGG+TGG | 0.649030 | 3.4:-92069824 | MS.gene42640:CDS |
GAACAGAATGATGGAAACCA+AGG | 0.651848 | 3.4:-92066494 | MS.gene42640:CDS |
AATAACAGGGTTCCTTGGAG+AGG | 0.653619 | 3.4:-92064501 | MS.gene42640:CDS |
TAAATGGAAGGAGAAGATGA+TGG | 0.655671 | 3.4:-92069378 | MS.gene42640:intron |
AGGATGGAGCATGTGACTGA+TGG | 0.655910 | 3.4:-92069710 | MS.gene42640:CDS |
AGCCATTTCGAAAAGCTCGT+GGG | 0.656326 | 3.4:+92062486 | None:intergenic |
ATTCAAGATGCAATCAAATG+GGG | 0.657597 | 3.4:-92064076 | MS.gene42640:CDS |
TGATGGGAAGGAGCATGCGA+TGG | 0.664658 | 3.4:-92069558 | MS.gene42640:intron |
GGTGGCGAGAGTGATGGCAG+TGG | 0.667128 | 3.4:-92069632 | MS.gene42640:CDS |
GGTGGTAAGGACTATCAGGA+AGG | 0.672514 | 3.4:+92063288 | None:intergenic |
GTACATGAAACCTCAAAACA+TGG | 0.675416 | 3.4:+92066445 | None:intergenic |
TCTTGAAAACACGATCTACA+CGG | 0.678426 | 3.4:+92065576 | None:intergenic |
GAGAATGAGCCGGAGAATGG+TGG | 0.682313 | 3.4:-92069857 | MS.gene42640:CDS |
GGAGCATGTGACTGATGGTG+AGG | 0.694254 | 3.4:-92069705 | MS.gene42640:CDS |
ATGTAGGTCGACCTATCTGG+AGG | 0.697352 | 3.4:-92064220 | MS.gene42640:intron |
AAAACTCCCTCCAAATAACA+GGG | 0.697948 | 3.4:-92064514 | MS.gene42640:CDS |
TTGGCGGCCAGATAAATGAG+AGG | 0.697977 | 3.4:-92067013 | MS.gene42640:CDS |
GTAATTGATAGTAACACACC+CGG | 0.711099 | 3.4:-92063929 | MS.gene42640:CDS |
TGAGTGACAGTGGTGGCGAG+AGG | 0.726504 | 3.4:-92069730 | MS.gene42640:CDS |
GTGATGGTGAGTGACAGTGG+TGG | 0.785967 | 3.4:-92069650 | MS.gene42640:CDS |
GTGATGGTGAGTGACAGTGG+TGG | 0.785967 | 3.4:-92069737 | MS.gene42640:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 92062317 | 92069903 | 92062317 | ID=MS.gene42640 |
chr3.4 | mRNA | 92062317 | 92069903 | 92062317 | ID=MS.gene42640.t1;Parent=MS.gene42640 |
chr3.4 | exon | 92069559 | 92069903 | 92069559 | ID=MS.gene42640.t1.exon1;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92069559 | 92069903 | 92069559 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92069379 | 92069450 | 92069379 | ID=MS.gene42640.t1.exon2;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92069379 | 92069450 | 92069379 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92069236 | 92069285 | 92069236 | ID=MS.gene42640.t1.exon3;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92069236 | 92069285 | 92069236 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92067927 | 92067954 | 92067927 | ID=MS.gene42640.t1.exon4;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92067927 | 92067954 | 92067927 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92067770 | 92067826 | 92067770 | ID=MS.gene42640.t1.exon5;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92067770 | 92067826 | 92067770 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92067611 | 92067711 | 92067611 | ID=MS.gene42640.t1.exon6;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92067611 | 92067711 | 92067611 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92067292 | 92067327 | 92067292 | ID=MS.gene42640.t1.exon7;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92067292 | 92067327 | 92067292 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92066916 | 92067085 | 92066916 | ID=MS.gene42640.t1.exon8;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92066916 | 92067085 | 92066916 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92066456 | 92066550 | 92066456 | ID=MS.gene42640.t1.exon9;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92066456 | 92066550 | 92066456 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92065926 | 92066009 | 92065926 | ID=MS.gene42640.t1.exon10;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92065926 | 92066009 | 92065926 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92065774 | 92065829 | 92065774 | ID=MS.gene42640.t1.exon11;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92065774 | 92065829 | 92065774 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92065535 | 92065649 | 92065535 | ID=MS.gene42640.t1.exon12;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92065535 | 92065649 | 92065535 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92064467 | 92064601 | 92064467 | ID=MS.gene42640.t1.exon13;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92064467 | 92064601 | 92064467 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92064053 | 92064236 | 92064053 | ID=MS.gene42640.t1.exon14;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92064053 | 92064236 | 92064053 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92063823 | 92064010 | 92063823 | ID=MS.gene42640.t1.exon15;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92063823 | 92064010 | 92063823 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92063662 | 92063739 | 92063662 | ID=MS.gene42640.t1.exon16;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92063662 | 92063739 | 92063662 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92063423 | 92063528 | 92063423 | ID=MS.gene42640.t1.exon17;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92063423 | 92063528 | 92063423 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92063270 | 92063392 | 92063270 | ID=MS.gene42640.t1.exon18;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92063270 | 92063392 | 92063270 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92062966 | 92063129 | 92062966 | ID=MS.gene42640.t1.exon19;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92062966 | 92063129 | 92062966 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
chr3.4 | exon | 92062317 | 92062640 | 92062317 | ID=MS.gene42640.t1.exon20;Parent=MS.gene42640.t1 |
chr3.4 | CDS | 92062317 | 92062640 | 92062317 | ID=cds.MS.gene42640.t1;Parent=MS.gene42640.t1 |
Gene Sequence |
Protein sequence |