Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81610.t1 | XP_003616918.1 | 96.1 | 516 | 19 | 1 | 1 | 515 | 1 | 516 | 4.20E-302 | 1046.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81610.t1 | O48766 | 74.6 | 507 | 120 | 2 | 4 | 504 | 9 | 512 | 1.1e-237 | 823.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81610.t1 | G7K7J2 | 96.1 | 516 | 19 | 1 | 1 | 515 | 1 | 516 | 3.0e-302 | 1046.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81610.t1 | MTR_5g085730 | 96.124 | 516 | 19 | 1 | 1 | 515 | 1 | 516 | 0.0 | 1048 |
MS.gene81610.t1 | MTR_3g080190 | 81.673 | 502 | 92 | 0 | 12 | 513 | 21 | 522 | 0.0 | 867 |
MS.gene81610.t1 | MTR_5g093590 | 71.888 | 498 | 139 | 1 | 4 | 500 | 7 | 504 | 0.0 | 752 |
MS.gene81610.t1 | MTR_8g099410 | 60.515 | 466 | 182 | 1 | 31 | 496 | 28 | 491 | 0.0 | 619 |
MS.gene81610.t1 | MTR_8g099410 | 58.402 | 488 | 199 | 2 | 31 | 516 | 28 | 513 | 0.0 | 617 |
MS.gene81610.t1 | MTR_4g074960 | 59.701 | 469 | 186 | 3 | 29 | 496 | 26 | 492 | 0.0 | 587 |
MS.gene81610.t1 | MTR_1g037340 | 50.932 | 483 | 223 | 6 | 17 | 494 | 6 | 479 | 4.99e-166 | 481 |
MS.gene81610.t1 | MTR_5g010000 | 49.375 | 480 | 223 | 7 | 22 | 497 | 30 | 493 | 7.60e-153 | 448 |
MS.gene81610.t1 | MTR_5g009970 | 47.983 | 471 | 226 | 6 | 30 | 497 | 40 | 494 | 2.59e-152 | 446 |
MS.gene81610.t1 | MTR_3g105230 | 45.661 | 484 | 246 | 6 | 1 | 484 | 1 | 467 | 2.42e-146 | 431 |
MS.gene81610.t1 | MTR_8g104820 | 47.447 | 470 | 234 | 8 | 31 | 496 | 30 | 490 | 2.12e-144 | 426 |
MS.gene81610.t1 | MTR_3g080810 | 47.122 | 469 | 235 | 8 | 31 | 496 | 35 | 493 | 1.12e-142 | 422 |
MS.gene81610.t1 | MTR_3g023740 | 45.766 | 496 | 252 | 6 | 1 | 496 | 1 | 479 | 1.22e-142 | 421 |
MS.gene81610.t1 | MTR_3g117500 | 44.421 | 475 | 253 | 6 | 26 | 497 | 19 | 485 | 1.85e-141 | 418 |
MS.gene81610.t1 | MTR_4g035955 | 45.416 | 469 | 241 | 6 | 29 | 496 | 12 | 466 | 5.16e-141 | 416 |
MS.gene81610.t1 | MTR_4g035930 | 42.739 | 482 | 259 | 7 | 17 | 496 | 1 | 467 | 9.47e-137 | 405 |
MS.gene81610.t1 | MTR_3g010330 | 45.435 | 471 | 237 | 8 | 31 | 496 | 25 | 480 | 5.95e-133 | 396 |
MS.gene81610.t1 | MTR_1g088190 | 45.860 | 471 | 223 | 9 | 31 | 498 | 39 | 480 | 1.48e-132 | 395 |
MS.gene81610.t1 | MTR_4g035975 | 45.000 | 480 | 233 | 10 | 31 | 496 | 27 | 489 | 4.63e-132 | 394 |
MS.gene81610.t1 | MTR_5g009970 | 46.963 | 428 | 208 | 6 | 73 | 497 | 9 | 420 | 8.95e-132 | 391 |
MS.gene81610.t1 | MTR_3g113720 | 45.011 | 471 | 245 | 9 | 32 | 497 | 58 | 519 | 4.07e-131 | 393 |
MS.gene81610.t1 | MTR_8g075990 | 45.940 | 468 | 239 | 10 | 32 | 494 | 64 | 522 | 3.13e-126 | 381 |
MS.gene81610.t1 | MTR_5g009970 | 45.232 | 409 | 205 | 6 | 92 | 497 | 1 | 393 | 1.82e-119 | 359 |
MS.gene81610.t1 | MTR_2g028480 | 39.963 | 543 | 259 | 17 | 2 | 491 | 56 | 584 | 3.71e-101 | 319 |
MS.gene81610.t1 | MTR_3g082440 | 39.308 | 491 | 256 | 17 | 27 | 491 | 112 | 586 | 8.66e-89 | 286 |
MS.gene81610.t1 | MTR_5g009970 | 44.575 | 341 | 170 | 6 | 160 | 497 | 1 | 325 | 5.13e-88 | 275 |
MS.gene81610.t1 | MTR_3g090540 | 36.605 | 489 | 269 | 17 | 29 | 491 | 105 | 578 | 9.81e-85 | 275 |
MS.gene81610.t1 | MTR_1g088190 | 45.791 | 297 | 131 | 7 | 31 | 324 | 39 | 308 | 1.09e-70 | 231 |
MS.gene81610.t1 | MTR_1g037320 | 54.658 | 161 | 72 | 1 | 92 | 252 | 1 | 160 | 5.06e-46 | 164 |
MS.gene81610.t1 | MTR_1g037320 | 49.180 | 122 | 61 | 1 | 373 | 494 | 169 | 289 | 8.44e-34 | 130 |
MS.gene81610.t1 | MTR_7g108925 | 45.283 | 159 | 86 | 1 | 340 | 498 | 43 | 200 | 1.91e-44 | 157 |
MS.gene81610.t1 | MTR_0393s0050 | 44.286 | 140 | 78 | 0 | 340 | 479 | 20 | 159 | 7.73e-38 | 138 |
MS.gene81610.t1 | MTR_4g128810 | 43.151 | 146 | 78 | 4 | 347 | 491 | 187 | 328 | 1.09e-26 | 112 |
MS.gene81610.t1 | MTR_4g047570 | 34.211 | 114 | 54 | 3 | 280 | 393 | 2 | 94 | 5.08e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81610.t1 | AT2G32990 | 75.502 | 498 | 113 | 2 | 4 | 495 | 9 | 503 | 0.0 | 802 |
MS.gene81610.t1 | AT1G64390 | 61.159 | 466 | 179 | 1 | 31 | 496 | 25 | 488 | 0.0 | 618 |
MS.gene81610.t1 | AT4G11050 | 60.510 | 471 | 184 | 1 | 27 | 497 | 22 | 490 | 0.0 | 613 |
MS.gene81610.t1 | AT4G11050 | 60.510 | 471 | 184 | 1 | 27 | 497 | 22 | 490 | 0.0 | 613 |
MS.gene81610.t1 | AT4G11050 | 60.510 | 471 | 184 | 1 | 27 | 497 | 22 | 490 | 0.0 | 611 |
MS.gene81610.t1 | AT1G48930 | 57.940 | 466 | 194 | 2 | 30 | 495 | 29 | 492 | 0.0 | 546 |
MS.gene81610.t1 | AT2G44550 | 49.177 | 486 | 237 | 5 | 9 | 494 | 12 | 487 | 1.21e-160 | 467 |
MS.gene81610.t1 | AT2G44560 | 49.177 | 486 | 238 | 5 | 9 | 494 | 12 | 488 | 2.35e-158 | 461 |
MS.gene81610.t1 | AT2G44540 | 48.765 | 486 | 240 | 5 | 9 | 494 | 12 | 488 | 2.35e-158 | 461 |
MS.gene81610.t1 | AT2G44570 | 47.942 | 486 | 244 | 6 | 10 | 494 | 12 | 489 | 5.85e-156 | 456 |
MS.gene81610.t1 | AT1G70710 | 46.076 | 497 | 255 | 7 | 1 | 496 | 1 | 485 | 4.36e-148 | 435 |
MS.gene81610.t1 | AT4G02290 | 48.188 | 469 | 233 | 6 | 31 | 498 | 52 | 511 | 3.00e-146 | 432 |
MS.gene81610.t1 | AT1G23210 | 45.808 | 489 | 255 | 6 | 9 | 496 | 6 | 485 | 8.02e-146 | 429 |
MS.gene81610.t1 | AT1G02800 | 48.712 | 466 | 225 | 7 | 31 | 494 | 43 | 496 | 1.99e-144 | 426 |
MS.gene81610.t1 | AT4G23560 | 48.529 | 476 | 223 | 8 | 26 | 497 | 18 | 475 | 7.93e-144 | 424 |
MS.gene81610.t1 | AT3G43860 | 44.378 | 498 | 254 | 8 | 3 | 496 | 5 | 483 | 2.46e-141 | 418 |
MS.gene81610.t1 | AT3G43860 | 44.378 | 498 | 254 | 8 | 3 | 496 | 5 | 483 | 2.46e-141 | 418 |
MS.gene81610.t1 | AT4G09740 | 47.689 | 476 | 227 | 8 | 26 | 497 | 18 | 475 | 1.55e-140 | 416 |
MS.gene81610.t1 | AT4G39010 | 45.106 | 470 | 246 | 7 | 31 | 496 | 29 | 490 | 1.15e-139 | 414 |
MS.gene81610.t1 | AT1G75680 | 47.484 | 457 | 230 | 7 | 32 | 487 | 58 | 505 | 2.15e-136 | 407 |
MS.gene81610.t1 | AT1G19940 | 47.403 | 462 | 233 | 7 | 31 | 491 | 48 | 500 | 5.98e-136 | 405 |
MS.gene81610.t1 | AT1G19940 | 47.403 | 462 | 233 | 7 | 31 | 491 | 48 | 500 | 5.98e-136 | 405 |
MS.gene81610.t1 | AT4G39000 | 46.072 | 471 | 240 | 8 | 31 | 496 | 25 | 486 | 1.16e-133 | 399 |
MS.gene81610.t1 | AT1G22880 | 43.326 | 487 | 257 | 10 | 16 | 496 | 5 | 478 | 3.33e-132 | 394 |
MS.gene81610.t1 | AT1G71380 | 43.648 | 488 | 256 | 11 | 15 | 496 | 4 | 478 | 4.82e-131 | 391 |
MS.gene81610.t1 | AT4G38990 | 43.434 | 495 | 259 | 10 | 13 | 496 | 5 | 489 | 1.40e-124 | 375 |
MS.gene81610.t1 | AT4G02290 | 45.588 | 408 | 212 | 6 | 92 | 498 | 1 | 399 | 2.43e-114 | 346 |
MS.gene81610.t1 | AT2G44570 | 45.000 | 400 | 211 | 6 | 10 | 408 | 12 | 403 | 1.51e-111 | 339 |
MS.gene81610.t1 | AT1G22880 | 41.769 | 407 | 222 | 9 | 92 | 496 | 1 | 394 | 1.57e-104 | 320 |
MS.gene81610.t1 | AT4G39010 | 43.716 | 366 | 195 | 6 | 31 | 392 | 29 | 387 | 1.05e-102 | 315 |
MS.gene81610.t1 | AT1G19940 | 45.604 | 364 | 193 | 5 | 31 | 393 | 48 | 407 | 4.30e-98 | 305 |
MS.gene81610.t1 | AT5G49720 | 42.245 | 490 | 238 | 17 | 31 | 491 | 108 | 581 | 9.15e-94 | 300 |
MS.gene81610.t1 | AT1G65610 | 37.526 | 485 | 264 | 17 | 31 | 491 | 116 | 585 | 3.72e-85 | 277 |
MS.gene81610.t1 | AT4G24260 | 41.309 | 489 | 244 | 17 | 31 | 491 | 108 | 581 | 1.20e-84 | 276 |
MS.gene81610.t1 | AT4G38990 | 41.274 | 361 | 182 | 6 | 13 | 372 | 5 | 336 | 6.22e-80 | 255 |
MS.gene81610.t1 | AT1G22880 | 46.032 | 315 | 153 | 8 | 16 | 324 | 5 | 308 | 3.06e-78 | 250 |
MS.gene81610.t1 | AT4G24260 | 38.974 | 390 | 202 | 14 | 31 | 393 | 108 | 488 | 6.91e-53 | 187 |
MS.gene81610.t1 | AT4G24260 | 39.437 | 355 | 187 | 11 | 31 | 361 | 108 | 458 | 4.31e-52 | 185 |
Find 108 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCACAAGTTGATTACATTT+TGG | 0.114624 | 5.1:+67652007 | MS.gene81610:CDS |
ACACAATGGAAGCAATTAAA+TGG | 0.182204 | 5.1:+67649502 | MS.gene81610:CDS |
AAGGAGAATAAAGGGTTTAT+TGG | 0.201878 | 5.1:+67652122 | MS.gene81610:CDS |
ATGGGCCTAGTTACCCTAAA+AGG | 0.230203 | 5.1:+67652066 | MS.gene81610:CDS |
GCAGGTGATCATGTAAAATT+TGG | 0.275934 | 5.1:+67649393 | MS.gene81610:CDS |
TCAAAATTGTCTTGCCAATC+AGG | 0.280992 | 5.1:-67652224 | None:intergenic |
ACTAAGTAGCTCATGTTCAT+AGG | 0.326589 | 5.1:-67652038 | None:intergenic |
AGATCCTAACCCTAATGTTT+TGG | 0.327088 | 5.1:+67652181 | MS.gene81610:CDS |
GCATATTGAAGACAATAAAA+TGG | 0.327204 | 5.1:+67652328 | MS.gene81610:CDS |
AACAATGTTGCATGAGAAAA+TGG | 0.330935 | 5.1:-67649076 | None:intergenic |
ATGTCATATAAGGAGAATAA+AGG | 0.332352 | 5.1:+67652113 | MS.gene81610:CDS |
GTACTCAAGGGTATGATAAT+TGG | 0.334494 | 5.1:+67652147 | MS.gene81610:CDS |
TTTGTGTAGTTGTTTGAGTT+TGG | 0.335226 | 5.1:+67650224 | MS.gene81610:intron |
CAAAACTTAGAATTTCTTCA+TGG | 0.342767 | 5.1:-67651980 | None:intergenic |
ATGAGCTACTTAGTGGGTTA+TGG | 0.343248 | 5.1:+67652047 | MS.gene81610:CDS |
GATCATTCTGCCCTCATTGA+TGG | 0.345421 | 5.1:+67649239 | MS.gene81610:CDS |
AAAGCTCCAACCAAAACATT+AGG | 0.350493 | 5.1:-67652191 | None:intergenic |
CTTTGGTTGGTGGTCCTGAT+TGG | 0.363936 | 5.1:+67652210 | MS.gene81610:CDS |
ACCTCTGCCCACAAAACATT+TGG | 0.367502 | 5.1:-67649558 | None:intergenic |
AGCATCAATTATGTCATATA+AGG | 0.370317 | 5.1:+67652103 | MS.gene81610:CDS |
TTACTGTGACAATGCTTTCA+TGG | 0.375820 | 5.1:+67649430 | MS.gene81610:CDS |
AACGCTGTGCTTCAAAATAA+AGG | 0.388474 | 5.1:-67649178 | None:intergenic |
TGTCATATAAGGAGAATAAA+GGG | 0.398718 | 5.1:+67652114 | MS.gene81610:CDS |
CACAATGGAAGCAATTAAAT+GGG | 0.416525 | 5.1:+67649503 | MS.gene81610:CDS |
TGAGCTACTTAGTGGGTTAT+GGG | 0.420359 | 5.1:+67652048 | MS.gene81610:CDS |
CTTGATGTTGTCATGTCCTC+TGG | 0.421252 | 5.1:-67649704 | None:intergenic |
ATTAACAATGCTAATAACTT+TGG | 0.421348 | 5.1:+67650392 | MS.gene81610:CDS |
ATCCCAGCTGAACTCTGTTA+TGG | 0.429035 | 5.1:-67650429 | None:intergenic |
TCTCCAACTCATTGCTTCTC+AGG | 0.431384 | 5.1:+67650466 | MS.gene81610:CDS |
GATACATGGATGAGTTGTTA+TGG | 0.433641 | 5.1:+67650315 | MS.gene81610:CDS |
GTGACCTGGTGCGGTGGTCC+TGG | 0.439799 | 5.1:-67654484 | None:intergenic |
GCTAATAACTTTGGTGGCAT+TGG | 0.440288 | 5.1:+67650401 | MS.gene81610:CDS |
CAAGCGACGCGTTGATTGTA+AGG | 0.449742 | 5.1:-67649212 | None:intergenic |
AATCCTGGTTCAGATCTTGC+TGG | 0.454479 | 5.1:+67649752 | MS.gene81610:CDS |
TGTAGGTGGATTTGGTAGGA+GGG | 0.457992 | 5.1:+67649361 | MS.gene81610:intron |
TAAGAATGGTGAAGATGAAA+AGG | 0.458583 | 5.1:-67649106 | None:intergenic |
ATCTAAATACTCTTCTTTGT+CGG | 0.460194 | 5.1:-67650363 | None:intergenic |
GAGTTTGGAGACAAGTATAG+AGG | 0.461932 | 5.1:+67650239 | MS.gene81610:CDS |
GTGTAGGTGGATTTGGTAGG+AGG | 0.462897 | 5.1:+67649360 | MS.gene81610:intron |
GGTCCATAACAGAGTTCAGC+TGG | 0.465205 | 5.1:+67650426 | MS.gene81610:CDS |
AGGTCACGTCGACGCGTCTC+AGG | 0.466847 | 5.1:+67654500 | MS.gene81610:CDS |
CTCATTGATGGTCTTGAACA+AGG | 0.471313 | 5.1:+67649251 | MS.gene81610:CDS |
GGAAAATATGATGCAAGTGT+TGG | 0.472006 | 5.1:+67650260 | MS.gene81610:CDS |
GGGTTTATTGGTTGTACTCA+AGG | 0.473441 | 5.1:+67652134 | MS.gene81610:CDS |
AAGCTCCAACCAAAACATTA+GGG | 0.475626 | 5.1:-67652190 | None:intergenic |
GTAGGAGGGTATTATGATGC+AGG | 0.476688 | 5.1:+67649375 | MS.gene81610:CDS |
AACAATGCTAATAACTTTGG+TGG | 0.477129 | 5.1:+67650395 | MS.gene81610:CDS |
TGGAGAGACAGCAGCAGCTA+TGG | 0.477469 | 5.1:+67649772 | MS.gene81610:CDS |
AAAACCAGGACCACCGCACC+AGG | 0.477531 | 5.1:+67654480 | MS.gene81610:CDS |
GTGATATACTTGACCAATAT+AGG | 0.486868 | 5.1:+67651754 | MS.gene81610:CDS |
CCAACCAAAACATTAGGGTT+AGG | 0.487034 | 5.1:-67652185 | None:intergenic |
TTGGTTGGAGCTTTGGTTGG+TGG | 0.496064 | 5.1:+67652200 | MS.gene81610:CDS |
TGTAAAATTTGGTTTACCAA+TGG | 0.496239 | 5.1:+67649404 | MS.gene81610:CDS |
ATACATGGATGAGTTGTTAT+GGG | 0.499908 | 5.1:+67650316 | MS.gene81610:CDS |
TACTGTGACAATGCTTTCAT+GGG | 0.500919 | 5.1:+67649431 | MS.gene81610:CDS |
AGCTGGGATGTCAAATATGC+AGG | 0.502495 | 5.1:+67650443 | MS.gene81610:CDS |
TATGAACATGAGCTACTTAG+TGG | 0.502664 | 5.1:+67652040 | MS.gene81610:CDS |
ATAACTTTGGTGGCATTGGT+TGG | 0.503155 | 5.1:+67650405 | MS.gene81610:CDS |
TAATTGATGCTCCTCTATGA+TGG | 0.503574 | 5.1:-67652091 | None:intergenic |
AGCTGGAGTTCTTTCCACAT+TGG | 0.505872 | 5.1:-67651829 | None:intergenic |
GGCCATGCCGACTGCTATAG+TGG | 0.506213 | 5.1:+67654446 | MS.gene81610:CDS |
CTTACAATCAACGCGTCGCT+TGG | 0.511017 | 5.1:+67649213 | MS.gene81610:CDS |
CTAAGTAGCTCATGTTCATA+GGG | 0.511542 | 5.1:-67652037 | None:intergenic |
AAGATAGATGAAAACAATCC+TGG | 0.513053 | 5.1:+67649737 | MS.gene81610:CDS |
GTGACACTGATCATTATTGT+TGG | 0.516338 | 5.1:+67649675 | MS.gene81610:CDS |
ATAGAAGAAATTGAAGGTGC+TGG | 0.518789 | 5.1:+67649468 | MS.gene81610:CDS |
TTGAATGTTAGTCGTAAGAA+TGG | 0.521671 | 5.1:-67649120 | None:intergenic |
TCATTGATGGTCTTGAACAA+GGG | 0.524596 | 5.1:+67649252 | MS.gene81610:CDS |
AGTTACTATGCGTCGGTGAG+TGG | 0.530726 | 5.1:+67650293 | MS.gene81610:CDS |
GAATATATAGAAGAAATTGA+AGG | 0.537965 | 5.1:+67649462 | MS.gene81610:CDS |
TGGGCCTAGTTACCCTAAAA+GGG | 0.540813 | 5.1:+67652067 | MS.gene81610:CDS |
CTAACATATAGTAATCCAGC+TGG | 0.543246 | 5.1:-67651846 | None:intergenic |
GTATGATAATTGGTACAGTA+AGG | 0.548590 | 5.1:+67652157 | MS.gene81610:CDS |
GGTTTATTGGTTGTACTCAA+GGG | 0.549775 | 5.1:+67652135 | MS.gene81610:CDS |
TAAATACTCTTCTTTGTCGG+TGG | 0.550160 | 5.1:-67650360 | None:intergenic |
TTTGTGTAGGTGGATTTGGT+AGG | 0.556338 | 5.1:+67649357 | MS.gene81610:intron |
TTACCTGAGAAGCAATGAGT+TGG | 0.557016 | 5.1:-67650469 | None:intergenic |
CCTAAAAGGGTCCATCATAG+AGG | 0.567742 | 5.1:+67652080 | MS.gene81610:CDS |
TGCGTCGGTGAGTGGATACA+TGG | 0.568122 | 5.1:+67650301 | MS.gene81610:CDS |
AATGTGGAAAGAACTCCAGC+TGG | 0.574282 | 5.1:+67651831 | MS.gene81610:CDS |
CATTGATGGTCTTGAACAAG+GGG | 0.580301 | 5.1:+67649253 | MS.gene81610:CDS |
ATTGTCACAGTAAATGCCAT+TGG | 0.581317 | 5.1:-67649420 | None:intergenic |
AAAAGTAAATGAGAGTAATG+TGG | 0.585609 | 5.1:-67649827 | None:intergenic |
TGAGACGCGTCGACGTGACC+TGG | 0.587482 | 5.1:-67654498 | None:intergenic |
CGCGTCGACGTGACCTGGTG+CGG | 0.588486 | 5.1:-67654493 | None:intergenic |
GAATTGTCTTAGGTTGGTGA+TGG | 0.590307 | 5.1:+67649653 | MS.gene81610:intron |
GATTTAGTACCTGTTGAGCA+TGG | 0.594061 | 5.1:-67649853 | None:intergenic |
GTCGACGTGACCTGGTGCGG+TGG | 0.603299 | 5.1:-67654490 | None:intergenic |
TGCCGACTGCTATAGTGGAG+CGG | 0.612889 | 5.1:+67654451 | MS.gene81610:CDS |
GATTACTATATGTTAGACAA+TGG | 0.612919 | 5.1:+67651853 | MS.gene81610:CDS |
CTCCGCTCCACTATAGCAGT+CGG | 0.616565 | 5.1:-67654453 | None:intergenic |
TTGTTCAAGACCATCAATGA+GGG | 0.619710 | 5.1:-67649249 | None:intergenic |
AGTGAAAAGTTACTATGCGT+CGG | 0.625933 | 5.1:+67650286 | MS.gene81610:CDS |
TCTCCAGCAAGATCTGAACC+AGG | 0.626113 | 5.1:-67649755 | None:intergenic |
CTCCACTATAGCAGTCGGCA+TGG | 0.628475 | 5.1:-67654448 | None:intergenic |
ATGAACATGAGCTACTTAGT+GGG | 0.640186 | 5.1:+67652041 | MS.gene81610:CDS |
GTCCATAACAGAGTTCAGCT+GGG | 0.646191 | 5.1:+67650427 | MS.gene81610:CDS |
AAACATCAATGGCACCAATG+TGG | 0.651345 | 5.1:+67651815 | MS.gene81610:CDS |
TTATTGTTGGCAAAGACCAG+AGG | 0.655563 | 5.1:+67649688 | MS.gene81610:CDS |
CTTGTTCAAGACCATCAATG+AGG | 0.657147 | 5.1:-67649250 | None:intergenic |
GATTACTCTGTTGTCAATAG+CGG | 0.674797 | 5.1:+67654425 | MS.gene81610:CDS |
GCTGTGCTTCAAAATAAAGG+AGG | 0.685635 | 5.1:-67649175 | None:intergenic |
AGTTGTTATGGGCTGCCACG+TGG | 0.694285 | 5.1:+67650327 | MS.gene81610:CDS |
ACTGTGACAATGCTTTCATG+GGG | 0.697045 | 5.1:+67649432 | MS.gene81610:CDS |
ACAATGGAAGCAATTAAATG+GGG | 0.705575 | 5.1:+67649504 | MS.gene81610:CDS |
TGGTGAATTACAACACACAA+TGG | 0.711977 | 5.1:+67649488 | MS.gene81610:CDS |
ACTGCTATAGTGGAGCGGAG+CGG | 0.734330 | 5.1:+67654456 | MS.gene81610:CDS |
GGTGGCTTTATAAAGCCACG+TGG | 0.802325 | 5.1:-67650342 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAATATTATATTAAAA+AGG | + | chr5.1:67650741-67650760 | MS.gene81610:intron | 0.0% |
!! | AAAACAAAACATATATTAAT+TGG | - | chr5.1:67650200-67650219 | None:intergenic | 10.0% |
!!! | AGATTTGTTATTATAAATTT+TGG | + | chr5.1:67652542-67652561 | MS.gene81610:intron | 10.0% |
!!! | GATTTGTTATTATAAATTTT+GGG | + | chr5.1:67652543-67652562 | MS.gene81610:intron | 10.0% |
!!! | TTAAGAAATTTAACATTTTT+AGG | - | chr5.1:67652867-67652886 | None:intergenic | 10.0% |
!! | AACTTATATATATAGTTACA+AGG | + | chr5.1:67654135-67654154 | MS.gene81610:intron | 15.0% |
!! | AAGTTTAATATATACCAAAT+TGG | + | chr5.1:67653623-67653642 | MS.gene81610:intron | 15.0% |
!! | TTCTTTGATTATCTTATTAT+TGG | - | chr5.1:67651564-67651583 | None:intergenic | 15.0% |
!! | TTTAAAAACTTTGGATAAAA+TGG | - | chr5.1:67650513-67650532 | None:intergenic | 15.0% |
!!! | AAACCATTTTTTAAAAACTT+TGG | - | chr5.1:67650522-67650541 | None:intergenic | 15.0% |
!!! | AAATTTGAAATGAATAAACA+TGG | - | chr5.1:67652617-67652636 | None:intergenic | 15.0% |
!!! | AAGATAACTTTTTGAATAAA+TGG | - | chr5.1:67653365-67653384 | None:intergenic | 15.0% |
!!! | GAATGACATTTTAAAAATAA+TGG | - | chr5.1:67651004-67651023 | None:intergenic | 15.0% |
!!! | GTGTTTACTTTTTTATTTTA+AGG | - | chr5.1:67654222-67654241 | None:intergenic | 15.0% |
!!! | TATCCAAAGTTTTTAAAAAA+TGG | + | chr5.1:67650516-67650535 | MS.gene81610:intron | 15.0% |
!!! | TATTTTTAAAATGTCATTCA+TGG | + | chr5.1:67651005-67651024 | MS.gene81610:intron | 15.0% |
!!! | TCTATTTTCTTAAATTACTA+CGG | - | chr5.1:67649910-67649929 | None:intergenic | 15.0% |
!! | AATATTGTCAATTCTTTAGA+AGG | + | chr5.1:67653440-67653459 | MS.gene81610:intron | 20.0% |
!! | ATGCATGAATTAAAGTATAT+AGG | + | chr5.1:67651031-67651050 | MS.gene81610:intron | 20.0% |
!! | ATGTAACAAAATTAAAGAAG+TGG | - | chr5.1:67649600-67649619 | None:intergenic | 20.0% |
!! | ATTAACAATGCTAATAACTT+TGG | + | chr5.1:67650392-67650411 | MS.gene81610:CDS | 20.0% |
!! | GAATATATAGAAGAAATTGA+AGG | + | chr5.1:67649462-67649481 | MS.gene81610:CDS | 20.0% |
!! | GCTCAAATAAATATATCTAA+TGG | + | chr5.1:67649279-67649298 | MS.gene81610:intron | 20.0% |
!! | TATAATTCTGAATTTCTCTT+TGG | + | chr5.1:67653895-67653914 | MS.gene81610:intron | 20.0% |
!! | TATATAGGTGTATTATCTTT+AGG | + | chr5.1:67651046-67651065 | MS.gene81610:intron | 20.0% |
!! | TATATATAGTTACAAGGTTA+AGG | + | chr5.1:67654141-67654160 | MS.gene81610:intron | 20.0% |
!! | TATTATAATCATGATGATCT+CGG | + | chr5.1:67653488-67653507 | MS.gene81610:intron | 20.0% |
!! | TATTCAACTTTATCTAGATT+TGG | + | chr5.1:67650942-67650961 | MS.gene81610:intron | 20.0% |
!! | TTGTAATTCTAGTATGTTAA+GGG | - | chr5.1:67654290-67654309 | None:intergenic | 20.0% |
!! | TTTACTAATTTGAAAACGAT+AGG | + | chr5.1:67650966-67650985 | MS.gene81610:intron | 20.0% |
!! | TTTGTAATTCTAGTATGTTA+AGG | - | chr5.1:67654291-67654310 | None:intergenic | 20.0% |
!!! | AAGACAATTTTGAAGATAAA+AGG | + | chr5.1:67652234-67652253 | MS.gene81610:CDS | 20.0% |
!!! | AATTGGTTTATATTCAAATC+AGG | + | chr5.1:67653677-67653696 | MS.gene81610:intron | 20.0% |
!!! | ATGCAACTATAATATTGATT+TGG | + | chr5.1:67650572-67650591 | MS.gene81610:intron | 20.0% |
!!! | ATTTGTTTTCTTAAACACAA+TGG | - | chr5.1:67649807-67649826 | None:intergenic | 20.0% |
!!! | CATAATCTAGAATGATAAAA+AGG | - | chr5.1:67652455-67652474 | None:intergenic | 20.0% |
!!! | GAATTTAATTTGATTTGACT+AGG | + | chr5.1:67650071-67650090 | MS.gene81610:intron | 20.0% |
!!! | GATTTTAATTGAATTGTCTT+AGG | + | chr5.1:67649643-67649662 | MS.gene81610:intron | 20.0% |
!!! | GCTTAATATTTTCAAACAAA+AGG | - | chr5.1:67650123-67650142 | None:intergenic | 20.0% |
!!! | TGACATCAAAGATTTTAATA+TGG | - | chr5.1:67650549-67650568 | None:intergenic | 20.0% |
!!! | TTTTTCCTCAAAATTTTCTT+TGG | + | chr5.1:67650897-67650916 | MS.gene81610:intron | 20.0% |
! | AAAAGTAAATGAGAGTAATG+TGG | - | chr5.1:67649830-67649849 | None:intergenic | 25.0% |
! | AAAGAAAAAGCAAAATATCG+AGG | + | chr5.1:67654249-67654268 | MS.gene81610:intron | 25.0% |
! | AATATTCTTTAGATCTGTGA+AGG | + | chr5.1:67650818-67650837 | MS.gene81610:intron | 25.0% |
! | ACAAAAAAATGCAATGAAGT+AGG | + | chr5.1:67652905-67652924 | MS.gene81610:intron | 25.0% |
! | AGCATCAATTATGTCATATA+AGG | + | chr5.1:67652103-67652122 | MS.gene81610:CDS | 25.0% |
! | ATCTAAATACTCTTCTTTGT+CGG | - | chr5.1:67650366-67650385 | None:intergenic | 25.0% |
! | ATGTCATATAAGGAGAATAA+AGG | + | chr5.1:67652113-67652132 | MS.gene81610:CDS | 25.0% |
! | CAAAACTTAGAATTTCTTCA+TGG | - | chr5.1:67651983-67652002 | None:intergenic | 25.0% |
! | CAAGAAAGAAAGAAATTCAA+AGG | - | chr5.1:67652661-67652680 | None:intergenic | 25.0% |
! | CTAGTATTATATGTCTTGTA+AGG | + | chr5.1:67652421-67652440 | MS.gene81610:intron | 25.0% |
! | CTTATGTATAAGGTTACATA+AGG | + | chr5.1:67654032-67654051 | MS.gene81610:intron | 25.0% |
! | GATTACTATATGTTAGACAA+TGG | + | chr5.1:67651853-67651872 | MS.gene81610:CDS | 25.0% |
! | GCATATTGAAGACAATAAAA+TGG | + | chr5.1:67652328-67652347 | MS.gene81610:CDS | 25.0% |
! | GGTTTAAAAACTGCAAAAAA+TGG | - | chr5.1:67651713-67651732 | None:intergenic | 25.0% |
! | TAACTAACCATACTCTAATA+AGG | + | chr5.1:67654191-67654210 | MS.gene81610:intron | 25.0% |
! | TATTGGATAAGTAGCTTATT+TGG | + | chr5.1:67653976-67653995 | MS.gene81610:intron | 25.0% |
! | TGTCATATAAGGAGAATAAA+GGG | + | chr5.1:67652114-67652133 | MS.gene81610:CDS | 25.0% |
! | TGTTAGTGATGAATTAAGTT+AGG | - | chr5.1:67652804-67652823 | None:intergenic | 25.0% |
! | TTAATTGAATTGTCTTAGGT+TGG | + | chr5.1:67649647-67649666 | MS.gene81610:intron | 25.0% |
!! | AAATTCTCGTTAATCACTTT+TGG | + | chr5.1:67653823-67653842 | MS.gene81610:intron | 25.0% |
!! | AATTAAAGTGATGTTGCTTA+TGG | + | chr5.1:67651157-67651176 | MS.gene81610:intron | 25.0% |
!! | ACATGATTGTAATTCACTTT+TGG | + | chr5.1:67652352-67652371 | MS.gene81610:intron | 25.0% |
!! | TGTAAAATTTGGTTTACCAA+TGG | + | chr5.1:67649404-67649423 | MS.gene81610:CDS | 25.0% |
!!! | AACATTCAAGCTTTTGATTA+TGG | + | chr5.1:67649134-67649153 | MS.gene81610:CDS | 25.0% |
!!! | AGCTTTAGTTTTGTATCTTT+GGG | + | chr5.1:67654399-67654418 | MS.gene81610:CDS | 25.0% |
!!! | ATACTGTCATTTCAATTTTG+AGG | - | chr5.1:67650022-67650041 | None:intergenic | 25.0% |
!!! | ATATGTACATGTTTTTGTGT+AGG | + | chr5.1:67649344-67649363 | MS.gene81610:intron | 25.0% |
!!! | ATCACAAGTTGATTACATTT+TGG | + | chr5.1:67652007-67652026 | MS.gene81610:CDS | 25.0% |
!!! | TCACAAGTTGATTACATTTT+GGG | + | chr5.1:67652008-67652027 | MS.gene81610:CDS | 25.0% |
AACAATGCTAATAACTTTGG+TGG | + | chr5.1:67650395-67650414 | MS.gene81610:CDS | 30.0% | |
AACAATGTTGCATGAGAAAA+TGG | - | chr5.1:67649079-67649098 | None:intergenic | 30.0% | |
AACACCAATACAAGTTTCTA+GGG | - | chr5.1:67653874-67653893 | None:intergenic | 30.0% | |
AAGATAGATGAAAACAATCC+TGG | + | chr5.1:67649737-67649756 | MS.gene81610:CDS | 30.0% | |
AAGGAGAATAAAGGGTTTAT+TGG | + | chr5.1:67652122-67652141 | MS.gene81610:CDS | 30.0% | |
AATCAAAAACTCACATGTCA+TGG | + | chr5.1:67651945-67651964 | MS.gene81610:CDS | 30.0% | |
AATTCTCATGTACCTTTACA+TGG | + | chr5.1:67653585-67653604 | MS.gene81610:intron | 30.0% | |
ACAATGGAAGCAATTAAATG+GGG | + | chr5.1:67649504-67649523 | MS.gene81610:CDS | 30.0% | |
ACACAATGGAAGCAATTAAA+TGG | + | chr5.1:67649502-67649521 | MS.gene81610:CDS | 30.0% | |
ACTCTTATCTGTTAAGTTCT+TGG | + | chr5.1:67650855-67650874 | MS.gene81610:intron | 30.0% | |
ATACATGGATGAGTTGTTAT+GGG | + | chr5.1:67650316-67650335 | MS.gene81610:CDS | 30.0% | |
ATGAAAAAGAAGATGAAGTG+TGG | - | chr5.1:67653214-67653233 | None:intergenic | 30.0% | |
ATGATAAGCGCTTATGTATA+AGG | + | chr5.1:67654022-67654041 | MS.gene81610:intron | 30.0% | |
ATTCTAGTATGTTAAGGGAT+TGG | - | chr5.1:67654285-67654304 | None:intergenic | 30.0% | |
CAAATATATCTAGCCAAACA+AGG | - | chr5.1:67654167-67654186 | None:intergenic | 30.0% | |
CACAATGGAAGCAATTAAAT+GGG | + | chr5.1:67649503-67649522 | MS.gene81610:CDS | 30.0% | |
CTGAATATGACTATTGCAAT+TGG | + | chr5.1:67653660-67653679 | MS.gene81610:intron | 30.0% | |
GAACTTAACAGATAAGAGTA+TGG | - | chr5.1:67650854-67650873 | None:intergenic | 30.0% | |
GAGACATCATTAAAAGTGAT+CGG | + | chr5.1:67651486-67651505 | MS.gene81610:intron | 30.0% | |
GTATGATAATTGGTACAGTA+AGG | + | chr5.1:67652157-67652176 | MS.gene81610:CDS | 30.0% | |
GTGATATACTTGACCAATAT+AGG | + | chr5.1:67651754-67651773 | MS.gene81610:CDS | 30.0% | |
TAACACCAATACAAGTTTCT+AGG | - | chr5.1:67653875-67653894 | None:intergenic | 30.0% | |
TAAGAATGGTGAAGATGAAA+AGG | - | chr5.1:67649109-67649128 | None:intergenic | 30.0% | |
TATATCATTCCATATCCTCT+TGG | - | chr5.1:67651203-67651222 | None:intergenic | 30.0% | |
TGTCAAACACAAAAACATGT+TGG | + | chr5.1:67649967-67649986 | MS.gene81610:intron | 30.0% | |
TGTCTCAACAAAAACATCAA+TGG | + | chr5.1:67651804-67651823 | MS.gene81610:CDS | 30.0% | |
TTCTAGTATGTTAAGGGATT+GGG | - | chr5.1:67654284-67654303 | None:intergenic | 30.0% | |
TTGAATGTTAGTCGTAAGAA+TGG | - | chr5.1:67649123-67649142 | None:intergenic | 30.0% | |
TTGCAAAAAGAGCTACTAAA+GGG | - | chr5.1:67652301-67652320 | None:intergenic | 30.0% | |
TTTGAGAAGTTGGAAAATGA+AGG | + | chr5.1:67653019-67653038 | MS.gene81610:intron | 30.0% | |
TTTGCAAAAAGAGCTACTAA+AGG | - | chr5.1:67652302-67652321 | None:intergenic | 30.0% | |
! | AAAATTTTCTTTGGTCCATG+TGG | + | chr5.1:67650906-67650925 | MS.gene81610:intron | 30.0% |
! | AATTTCGTACTTTGAGAAGT+TGG | + | chr5.1:67653009-67653028 | MS.gene81610:intron | 30.0% |
! | ATACTAGTCCAAATGTTTTG+TGG | + | chr5.1:67649550-67649569 | MS.gene81610:CDS | 30.0% |
! | ATGACATGTGAGTTTTTGAT+TGG | - | chr5.1:67651946-67651965 | None:intergenic | 30.0% |
! | ATGGACCAAAGAAAATTTTG+AGG | - | chr5.1:67650905-67650924 | None:intergenic | 30.0% |
! | ATGTTGTTTAGAGTGAAATG+TGG | - | chr5.1:67652768-67652787 | None:intergenic | 30.0% |
! | CAATTCTTTAGAAGGCAATT+TGG | + | chr5.1:67653448-67653467 | MS.gene81610:intron | 30.0% |
! | GAACAATTTTATGCAAACTG+AGG | + | chr5.1:67652256-67652275 | MS.gene81610:CDS | 30.0% |
! | TACTAGTCCAAATGTTTTGT+GGG | + | chr5.1:67649551-67649570 | MS.gene81610:CDS | 30.0% |
! | TATGTTTCTTGTGTTTTGCT+TGG | - | chr5.1:67651734-67651753 | None:intergenic | 30.0% |
! | TCTAGTTCAATTCATTCCTA+TGG | + | chr5.1:67653847-67653866 | MS.gene81610:intron | 30.0% |
! | TTTGTGTAGTTGTTTGAGTT+TGG | + | chr5.1:67650224-67650243 | MS.gene81610:intron | 30.0% |
!! | ACTGCTCTTTTAAAAATGGT+TGG | + | chr5.1:67651458-67651477 | MS.gene81610:intron | 30.0% |
!! | CTCTTTTAAAAATGGTTGGA+AGG | + | chr5.1:67651462-67651481 | MS.gene81610:intron | 30.0% |
!! | TAGCACTGCTCTTTTAAAAA+TGG | + | chr5.1:67651454-67651473 | MS.gene81610:intron | 30.0% |
!!! | GAGCTTTAGTTTTGTATCTT+TGG | + | chr5.1:67654398-67654417 | MS.gene81610:CDS | 30.0% |
!!! | GCAATTTTGGAATTTCAGTT+GGG | + | chr5.1:67653127-67653146 | MS.gene81610:intron | 30.0% |
!!! | TTAGTTTTGTATCTTTGGGA+AGG | + | chr5.1:67654403-67654422 | MS.gene81610:CDS | 30.0% |
AAAGCTCCAACCAAAACATT+AGG | - | chr5.1:67652194-67652213 | None:intergenic | 35.0% | |
AAAGGCTCAAATTAGAGTTG+AGG | - | chr5.1:67652643-67652662 | None:intergenic | 35.0% | |
AACGCTGTGCTTCAAAATAA+AGG | - | chr5.1:67649181-67649200 | None:intergenic | 35.0% | |
AAGCTCCAACCAAAACATTA+GGG | - | chr5.1:67652193-67652212 | None:intergenic | 35.0% | |
AATCATCTTCTTCATCATGG+TGG | + | chr5.1:67653512-67653531 | MS.gene81610:intron | 35.0% | |
ACTAAGTAGCTCATGTTCAT+AGG | - | chr5.1:67652041-67652060 | None:intergenic | 35.0% | |
AGAATGGTGAAAATCGTACT+TGG | + | chr5.1:67652979-67652998 | MS.gene81610:intron | 35.0% | |
AGTGAAAAGTTACTATGCGT+CGG | + | chr5.1:67650286-67650305 | MS.gene81610:CDS | 35.0% | |
ATGAACATGAGCTACTTAGT+GGG | + | chr5.1:67652041-67652060 | MS.gene81610:CDS | 35.0% | |
ATTGTCACAGTAAATGCCAT+TGG | - | chr5.1:67649423-67649442 | None:intergenic | 35.0% | |
CATCGCTTACTTGATATTGT+GGG | + | chr5.1:67652933-67652952 | MS.gene81610:intron | 35.0% | |
CCTCTGCAAACAAAAATCTA+GGG | - | chr5.1:67654316-67654335 | None:intergenic | 35.0% | |
CTAACATATAGTAATCCAGC+TGG | - | chr5.1:67651849-67651868 | None:intergenic | 35.0% | |
CTAAGTAGCTCATGTTCATA+GGG | - | chr5.1:67652040-67652059 | None:intergenic | 35.0% | |
CTCACAAAGAAAAAGAAGTG+AGG | - | chr5.1:67653304-67653323 | None:intergenic | 35.0% | |
CTTGATATTGTGGGAGAAAT+TGG | + | chr5.1:67652942-67652961 | MS.gene81610:intron | 35.0% | |
GATACATGGATGAGTTGTTA+TGG | + | chr5.1:67650315-67650334 | MS.gene81610:CDS | 35.0% | |
GATTACTCTGTTGTCAATAG+CGG | + | chr5.1:67654425-67654444 | MS.gene81610:CDS | 35.0% | |
GCACTATTTACCACAATACA+CGG | - | chr5.1:67651376-67651395 | None:intergenic | 35.0% | |
GCAGGTGATCATGTAAAATT+TGG | + | chr5.1:67649393-67649412 | MS.gene81610:CDS | 35.0% | |
GGAAAATATGATGCAAGTGT+TGG | + | chr5.1:67650260-67650279 | MS.gene81610:CDS | 35.0% | |
GGAAATCATCTTCTTCATCA+TGG | + | chr5.1:67653509-67653528 | MS.gene81610:intron | 35.0% | |
GTGACACTGATCATTATTGT+TGG | + | chr5.1:67649675-67649694 | MS.gene81610:CDS | 35.0% | |
TAAATACTCTTCTTTGTCGG+TGG | - | chr5.1:67650363-67650382 | None:intergenic | 35.0% | |
TAATTGATGCTCCTCTATGA+TGG | - | chr5.1:67652094-67652113 | None:intergenic | 35.0% | |
TACTGTGACAATGCTTTCAT+GGG | + | chr5.1:67649431-67649450 | MS.gene81610:CDS | 35.0% | |
TATGAACATGAGCTACTTAG+TGG | + | chr5.1:67652040-67652059 | MS.gene81610:CDS | 35.0% | |
TCAAAATTGTCTTGCCAATC+AGG | - | chr5.1:67652227-67652246 | None:intergenic | 35.0% | |
TCAGGACCATGTAGAAAATA+TGG | + | chr5.1:67653695-67653714 | MS.gene81610:intron | 35.0% | |
TCATCGCTTACTTGATATTG+TGG | + | chr5.1:67652932-67652951 | MS.gene81610:intron | 35.0% | |
TCATGTACCTTTACATGGAA+AGG | + | chr5.1:67653590-67653609 | MS.gene81610:intron | 35.0% | |
TCCTCTGCAAACAAAAATCT+AGG | - | chr5.1:67654317-67654336 | None:intergenic | 35.0% | |
TGCAAAAAGAGCTACTAAAG+GGG | - | chr5.1:67652300-67652319 | None:intergenic | 35.0% | |
TGGTGAATTACAACACACAA+TGG | + | chr5.1:67649488-67649507 | MS.gene81610:CDS | 35.0% | |
TTAAACTTATGTGCCTCTTC+AGG | + | chr5.1:67654341-67654360 | MS.gene81610:intron | 35.0% | |
TTACTGTGACAATGCTTTCA+TGG | + | chr5.1:67649430-67649449 | MS.gene81610:CDS | 35.0% | |
TTAGTCATTGACAAAGCTAG+TGG | + | chr5.1:67651528-67651547 | MS.gene81610:intron | 35.0% | |
TTGATTGAAAGTTGCACTCT+AGG | - | chr5.1:67652711-67652730 | None:intergenic | 35.0% | |
TTGTTCAAGACCATCAATGA+GGG | - | chr5.1:67649252-67649271 | None:intergenic | 35.0% | |
! | AGATCCTAACCCTAATGTTT+TGG | + | chr5.1:67652181-67652200 | MS.gene81610:CDS | 35.0% |
! | ATAGAAGAAATTGAAGGTGC+TGG | + | chr5.1:67649468-67649487 | MS.gene81610:CDS | 35.0% |
! | CGTCCTAAACAAATTCCTTT+TGG | + | chr5.1:67653554-67653573 | MS.gene81610:intron | 35.0% |
! | CTGCCAAAAGGAATTTGTTT+AGG | - | chr5.1:67653560-67653579 | None:intergenic | 35.0% |
! | GAGTGAAATGTGGTAGTTTT+AGG | - | chr5.1:67652758-67652777 | None:intergenic | 35.0% |
! | GCTTGATGTCACTTCAATTA+CGG | - | chr5.1:67650622-67650641 | None:intergenic | 35.0% |
! | GGAGTATCCTTATTAGAGTA+TGG | - | chr5.1:67654201-67654220 | None:intergenic | 35.0% |
! | GGTTTATTGGTTGTACTCAA+GGG | + | chr5.1:67652135-67652154 | MS.gene81610:CDS | 35.0% |
! | GTACTCAAGGGTATGATAAT+TGG | + | chr5.1:67652147-67652166 | MS.gene81610:CDS | 35.0% |
! | GTTGGTCCATATTTTCTACA+TGG | - | chr5.1:67653704-67653723 | None:intergenic | 35.0% |
! | TCATTGATGGTCTTGAACAA+GGG | + | chr5.1:67649252-67649271 | MS.gene81610:CDS | 35.0% |
! | TGTCACTTCAATTACGGTTA+TGG | - | chr5.1:67650616-67650635 | None:intergenic | 35.0% |
! | TTTAGAGCACTACTGAGTTA+GGG | + | chr5.1:67653950-67653969 | MS.gene81610:intron | 35.0% |
!! | AATAAAGGAGGCTTTTTGAG+AGG | - | chr5.1:67649166-67649185 | None:intergenic | 35.0% |
!! | ACTCTGCTTTTGACCTATAT+TGG | - | chr5.1:67651770-67651789 | None:intergenic | 35.0% |
!! | ATAAAGGAGGCTTTTTGAGA+GGG | - | chr5.1:67649165-67649184 | None:intergenic | 35.0% |
!! | TGTACATGTTTTTGTGTAGG+TGG | + | chr5.1:67649347-67649366 | MS.gene81610:intron | 35.0% |
!! | TGTTTTTGTGTAGGTGGATT+TGG | + | chr5.1:67649353-67649372 | MS.gene81610:intron | 35.0% |
!! | TTTCTTTGTGAGAGCATTAG+TGG | + | chr5.1:67653312-67653331 | MS.gene81610:intron | 35.0% |
!!! | ATTTTGGAATTTCAGTTGGG+AGG | + | chr5.1:67653130-67653149 | MS.gene81610:intron | 35.0% |
!!! | GGCAATTTTGGAATTTCAGT+TGG | + | chr5.1:67653126-67653145 | MS.gene81610:intron | 35.0% |
!!! | TAATGTTTTGGTTGGAGCTT+TGG | + | chr5.1:67652193-67652212 | MS.gene81610:CDS | 35.0% |
!!! | TGTGCTCTTGTTTTGCTTTT+GGG | + | chr5.1:67654369-67654388 | MS.gene81610:CDS | 35.0% |
!!! | TTGTGCTCTTGTTTTGCTTT+TGG | + | chr5.1:67654368-67654387 | MS.gene81610:CDS | 35.0% |
!!! | TTTTGGAATTTCAGTTGGGA+GGG | + | chr5.1:67653131-67653150 | MS.gene81610:intron | 35.0% |
AAACATCAATGGCACCAATG+TGG | + | chr5.1:67651815-67651834 | MS.gene81610:CDS | 40.0% | |
AACCTTGATTACATCACCAC+GGG | + | chr5.1:67653755-67653774 | MS.gene81610:intron | 40.0% | |
ACTGTGACAATGCTTTCATG+GGG | + | chr5.1:67649432-67649451 | MS.gene81610:CDS | 40.0% | |
AGCAGAAAGTGAAATGAAGC+AGG | - | chr5.1:67653250-67653269 | None:intergenic | 40.0% | |
ATGGTGAAAATCGTACTTGG+AGG | + | chr5.1:67652982-67653001 | MS.gene81610:intron | 40.0% | |
ATGTGTGCTAGTGTTGTCAT+CGG | + | chr5.1:67653391-67653410 | MS.gene81610:intron | 40.0% | |
ATTCTCGTTGATGCTCAATC+TGG | + | chr5.1:67653790-67653809 | MS.gene81610:intron | 40.0% | |
CAAAAACTCACATGTCATGG+AGG | + | chr5.1:67651948-67651967 | MS.gene81610:CDS | 40.0% | |
CCAACCAAAACATTAGGGTT+AGG | - | chr5.1:67652188-67652207 | None:intergenic | 40.0% | |
CGGAGATGTGACTGAAAAAT+AGG | - | chr5.1:67651356-67651375 | None:intergenic | 40.0% | |
CTTATGGTTGAGCCTAATGT+TGG | + | chr5.1:67651173-67651192 | MS.gene81610:intron | 40.0% | |
CTTCATCATGGTGGTAACTT+TGG | + | chr5.1:67653521-67653540 | MS.gene81610:intron | 40.0% | |
CTTGTTCAAGACCATCAATG+AGG | - | chr5.1:67649253-67649272 | None:intergenic | 40.0% | |
GAACCTTGATTACATCACCA+CGG | + | chr5.1:67653754-67653773 | MS.gene81610:intron | 40.0% | |
GAGTTTGGAGACAAGTATAG+AGG | + | chr5.1:67650239-67650258 | MS.gene81610:CDS | 40.0% | |
GATTTAGTACCTGTTGAGCA+TGG | - | chr5.1:67649856-67649875 | None:intergenic | 40.0% | |
GCTGTGCTTCAAAATAAAGG+AGG | - | chr5.1:67649178-67649197 | None:intergenic | 40.0% | |
GTGTGATTTAACTCACACAG+CGG | + | chr5.1:67653105-67653124 | MS.gene81610:intron | 40.0% | |
GTTTGACACCAACAAGATGT+TGG | - | chr5.1:67649955-67649974 | None:intergenic | 40.0% | |
TAGAAATATGCCACTCCACA+TGG | - | chr5.1:67650924-67650943 | None:intergenic | 40.0% | |
TATACGTGCCAACATCTTGT+TGG | + | chr5.1:67649944-67649963 | MS.gene81610:intron | 40.0% | |
TCATCACTTAGTGTGTGTGA+TGG | - | chr5.1:67650644-67650663 | None:intergenic | 40.0% | |
TCATCGGCGGATAATATTGT+TGG | + | chr5.1:67653407-67653426 | MS.gene81610:intron | 40.0% | |
TGATTCGCCTTTCCATGTAA+AGG | - | chr5.1:67653600-67653619 | None:intergenic | 40.0% | |
TGGACCCTAGAAACTTGTAT+TGG | + | chr5.1:67653867-67653886 | MS.gene81610:intron | 40.0% | |
TTACCTGAGAAGCAATGAGT+TGG | - | chr5.1:67650472-67650491 | None:intergenic | 40.0% | |
TTATTGTTGGCAAAGACCAG+AGG | + | chr5.1:67649688-67649707 | MS.gene81610:CDS | 40.0% | |
! | AAGTGAGGTATAAGTGTTGC+AGG | - | chr5.1:67653289-67653308 | None:intergenic | 40.0% |
! | ACTTTTACACCATGCTCAAC+AGG | + | chr5.1:67649844-67649863 | MS.gene81610:CDS | 40.0% |
! | CATTGATGGTCTTGAACAAG+GGG | + | chr5.1:67649253-67649272 | MS.gene81610:CDS | 40.0% |
! | CTACTGAGTTAGGGTCTTAT+TGG | + | chr5.1:67653959-67653978 | MS.gene81610:intron | 40.0% |
! | CTCATTGATGGTCTTGAACA+AGG | + | chr5.1:67649251-67649270 | MS.gene81610:CDS | 40.0% |
! | GAGAATTTTGTGCTGCCAAA+AGG | - | chr5.1:67653572-67653591 | None:intergenic | 40.0% |
! | GAGCATCAACGAGAATTTTG+AGG | - | chr5.1:67653786-67653805 | None:intergenic | 40.0% |
! | GCTAATAACTTTGGTGGCAT+TGG | + | chr5.1:67650401-67650420 | MS.gene81610:CDS | 40.0% |
! | GGGTTTATTGGTTGTACTCA+AGG | + | chr5.1:67652134-67652153 | MS.gene81610:CDS | 40.0% |
! | TTTGTGTAGGTGGATTTGGT+AGG | + | chr5.1:67649357-67649376 | MS.gene81610:intron | 40.0% |
!! | ATAACTTTGGTGGCATTGGT+TGG | + | chr5.1:67650405-67650424 | MS.gene81610:CDS | 40.0% |
!! | ATGAGCTACTTAGTGGGTTA+TGG | + | chr5.1:67652047-67652066 | MS.gene81610:CDS | 40.0% |
!! | CCCTAGATTTTTGTTTGCAG+AGG | + | chr5.1:67654313-67654332 | MS.gene81610:intron | 40.0% |
!! | CTTTAGAGCACTACTGAGTT+AGG | + | chr5.1:67653949-67653968 | MS.gene81610:intron | 40.0% |
!! | GAATTGTCTTAGGTTGGTGA+TGG | + | chr5.1:67649653-67649672 | MS.gene81610:intron | 40.0% |
!! | TACAAGGTTAAGGCCTTGTT+TGG | + | chr5.1:67654151-67654170 | MS.gene81610:intron | 40.0% |
!! | TACAAGTTTCTAGGGTCCAT+AGG | - | chr5.1:67653866-67653885 | None:intergenic | 40.0% |
!! | TGAGCTACTTAGTGGGTTAT+GGG | + | chr5.1:67652048-67652067 | MS.gene81610:CDS | 40.0% |
!! | TGCTATTTCTAGCGAGAGAT+AGG | + | chr5.1:67651270-67651289 | MS.gene81610:intron | 40.0% |
!!! | ATTTTGAAGCACAGCGTTCA+GGG | + | chr5.1:67649183-67649202 | MS.gene81610:CDS | 40.0% |
!!! | CCTAACCCTAATGTTTTGGT+TGG | + | chr5.1:67652185-67652204 | MS.gene81610:CDS | 40.0% |
!!! | CTCTATGATGGACCCTTTTA+GGG | - | chr5.1:67652082-67652101 | None:intergenic | 40.0% |
!!! | GTGCTCTTGTTTTGCTTTTG+GGG | + | chr5.1:67654370-67654389 | MS.gene81610:CDS | 40.0% |
!!! | TATTTTGAAGCACAGCGTTC+AGG | + | chr5.1:67649182-67649201 | MS.gene81610:CDS | 40.0% |
AAGCAAAATATCGAGGCAGC+AGG | + | chr5.1:67654256-67654275 | MS.gene81610:intron | 45.0% | |
AATCCTGGTTCAGATCTTGC+TGG | + | chr5.1:67649752-67649771 | MS.gene81610:CDS | 45.0% | |
AATGTGGAAAGAACTCCAGC+TGG | + | chr5.1:67651831-67651850 | MS.gene81610:CDS | 45.0% | |
ACCTCTGCCCACAAAACATT+TGG | - | chr5.1:67649561-67649580 | None:intergenic | 45.0% | |
ACCTTGATTACATCACCACG+GGG | + | chr5.1:67653756-67653775 | MS.gene81610:intron | 45.0% | |
ACTTATGTGCCTCTTCAGGT+AGG | + | chr5.1:67654345-67654364 | MS.gene81610:intron | 45.0% | |
AGCTGGAGTTCTTTCCACAT+TGG | - | chr5.1:67651832-67651851 | None:intergenic | 45.0% | |
AGCTGGGATGTCAAATATGC+AGG | + | chr5.1:67650443-67650462 | MS.gene81610:CDS | 45.0% | |
AGTCACATCTCCGTGTATTG+TGG | + | chr5.1:67651363-67651382 | MS.gene81610:intron | 45.0% | |
ATCCCAGCTGAACTCTGTTA+TGG | - | chr5.1:67650432-67650451 | None:intergenic | 45.0% | |
ATGGGCCTAGTTACCCTAAA+AGG | + | chr5.1:67652066-67652085 | MS.gene81610:CDS | 45.0% | |
CAACGCTTGAATGCATTCGA+TGG | + | chr5.1:67653720-67653739 | MS.gene81610:intron | 45.0% | |
CATCGAATGCATTCAAGCGT+TGG | - | chr5.1:67653722-67653741 | None:intergenic | 45.0% | |
CCTAAAAGGGTCCATCATAG+AGG | + | chr5.1:67652080-67652099 | MS.gene81610:CDS | 45.0% | |
CTTGATGTTGTCATGTCCTC+TGG | - | chr5.1:67649707-67649726 | None:intergenic | 45.0% | |
GATCATTCTGCCCTCATTGA+TGG | + | chr5.1:67649239-67649258 | MS.gene81610:CDS | 45.0% | |
GCTGGCAAGTGTTTATTGCA+TGG | + | chr5.1:67651316-67651335 | MS.gene81610:intron | 45.0% | |
GTAATCAAGGTTCTTCGCGT+TGG | - | chr5.1:67653747-67653766 | None:intergenic | 45.0% | |
GTCCATAACAGAGTTCAGCT+GGG | + | chr5.1:67650427-67650446 | MS.gene81610:CDS | 45.0% | |
TAAACACTTGCCAGCTGTGT+CGG | - | chr5.1:67651311-67651330 | None:intergenic | 45.0% | |
TAGTACGCTCGTCACCAATT+TGG | - | chr5.1:67653640-67653659 | None:intergenic | 45.0% | |
TCTCCAACTCATTGCTTCTC+AGG | + | chr5.1:67650466-67650485 | MS.gene81610:CDS | 45.0% | |
TGGGCCTAGTTACCCTAAAA+GGG | + | chr5.1:67652067-67652086 | MS.gene81610:CDS | 45.0% | |
TTGCAGGTCACAGAAAGAAG+AGG | - | chr5.1:67653273-67653292 | None:intergenic | 45.0% | |
TTTCTTTGGTCCATGTGGAG+TGG | + | chr5.1:67650911-67650930 | MS.gene81610:intron | 45.0% | |
! | AACTCACACAGCGGCAATTT+TGG | + | chr5.1:67653114-67653133 | MS.gene81610:intron | 45.0% |
! | GGGAGGGAGCAATTTTTGTT+GGG | + | chr5.1:67653147-67653166 | MS.gene81610:intron | 45.0% |
! | TCCAAATGTTTTGTGGGCAG+AGG | + | chr5.1:67649557-67649576 | MS.gene81610:CDS | 45.0% |
! | TGGGAGAAATTGGCGTTGAA+TGG | + | chr5.1:67652952-67652971 | MS.gene81610:intron | 45.0% |
! | TGGGAGGGAGCAATTTTTGT+TGG | + | chr5.1:67653146-67653165 | MS.gene81610:intron | 45.0% |
! | TGTAGGTGGATTTGGTAGGA+GGG | + | chr5.1:67649361-67649380 | MS.gene81610:intron | 45.0% |
!! | GTAGGAGGGTATTATGATGC+AGG | + | chr5.1:67649375-67649394 | MS.gene81610:CDS | 45.0% |
!!! | CCTCTATGATGGACCCTTTT+AGG | - | chr5.1:67652083-67652102 | None:intergenic | 45.0% |
!!! | GTTTTGGTTGGAGCTTTGGT+TGG | + | chr5.1:67652197-67652216 | MS.gene81610:CDS | 45.0% |
!!! | TGGACCCTTTTAGGGTAACT+AGG | - | chr5.1:67652074-67652093 | None:intergenic | 45.0% |
!! | CTATATATTTATTTATTTAA+AGG | - | chr5.1:67652384-67652403 | None:intergenic | 5.0% |
!!! | AATAAAATGTAATTTTAAAA+AGG | + | chr5.1:67651243-67651262 | MS.gene81610:intron | 5.0% |
!!! | ATTTTATCATATAATTATTT+TGG | + | chr5.1:67650714-67650733 | MS.gene81610:intron | 5.0% |
!!! | TTTTATCATATAATTATTTT+GGG | + | chr5.1:67650715-67650734 | MS.gene81610:intron | 5.0% |
AAACACTTGCCAGCTGTGTC+GGG | - | chr5.1:67651310-67651329 | None:intergenic | 50.0% | |
AGAGCACAACCTACCTGAAG+AGG | - | chr5.1:67654357-67654376 | None:intergenic | 50.0% | |
CCTAATGTTGGAGAGCCAAG+AGG | + | chr5.1:67651185-67651204 | MS.gene81610:intron | 50.0% | |
CTTACAATCAACGCGTCGCT+TGG | + | chr5.1:67649213-67649232 | MS.gene81610:CDS | 50.0% | |
GGAGACGCTAAGAGAGTTCT+AGG | - | chr5.1:67652596-67652615 | None:intergenic | 50.0% | |
GGTCCATAACAGAGTTCAGC+TGG | + | chr5.1:67650426-67650445 | MS.gene81610:CDS | 50.0% | |
GTTGGAGAGCCAAGAGGATA+TGG | + | chr5.1:67651191-67651210 | MS.gene81610:intron | 50.0% | |
TCTCCAGCAAGATCTGAACC+AGG | - | chr5.1:67649758-67649777 | None:intergenic | 50.0% | |
TGTGCTAGTGTTGTCATCGG+CGG | + | chr5.1:67653394-67653413 | MS.gene81610:intron | 50.0% | |
! | AGTTACTATGCGTCGGTGAG+TGG | + | chr5.1:67650293-67650312 | MS.gene81610:CDS | 50.0% |
! | CCTCTTGGCTCTCCAACATT+AGG | - | chr5.1:67651188-67651207 | None:intergenic | 50.0% |
! | GGCGTTGAATGGCGTAAGAA+TGG | + | chr5.1:67652963-67652982 | MS.gene81610:intron | 50.0% |
! | GTGTAGGTGGATTTGGTAGG+AGG | + | chr5.1:67649360-67649379 | MS.gene81610:intron | 50.0% |
! | TCCCCGTGGTGATGTAATCA+AGG | - | chr5.1:67653760-67653779 | None:intergenic | 50.0% |
! | TGCAAAGCTAAAGCACCACC+AGG | - | chr5.1:67651127-67651146 | None:intergenic | 50.0% |
! | TTGGTTGGAGCTTTGGTTGG+TGG | + | chr5.1:67652200-67652219 | MS.gene81610:CDS | 50.0% |
!! | CAAGCGACGCGTTGATTGTA+AGG | - | chr5.1:67649215-67649234 | None:intergenic | 50.0% |
!! | CTTTGGTTGGTGGTCCTGAT+TGG | + | chr5.1:67652210-67652229 | MS.gene81610:CDS | 50.0% |
!! | GGTGGCTTTATAAAGCCACG+TGG | - | chr5.1:67650345-67650364 | None:intergenic | 50.0% |
!!! | GAATTTTGAGGTTCTCCCCG+TGG | - | chr5.1:67653774-67653793 | None:intergenic | 50.0% |
CTCCACTATAGCAGTCGGCA+TGG | - | chr5.1:67654451-67654470 | None:intergenic | 55.0% | |
CTCCGCTCCACTATAGCAGT+CGG | - | chr5.1:67654456-67654475 | None:intergenic | 55.0% | |
TGGAGAGACAGCAGCAGCTA+TGG | + | chr5.1:67649772-67649791 | MS.gene81610:CDS | 55.0% | |
! | ACTGCTATAGTGGAGCGGAG+CGG | + | chr5.1:67654456-67654475 | MS.gene81610:CDS | 55.0% |
! | AGTTGTTATGGGCTGCCACG+TGG | + | chr5.1:67650327-67650346 | MS.gene81610:CDS | 55.0% |
! | CGAGATTTTCCCGACACAGC+TGG | + | chr5.1:67651298-67651317 | MS.gene81610:intron | 55.0% |
! | TGCCGACTGCTATAGTGGAG+CGG | + | chr5.1:67654451-67654470 | MS.gene81610:CDS | 55.0% |
! | TGCGTCGGTGAGTGGATACA+TGG | + | chr5.1:67650301-67650320 | MS.gene81610:CDS | 55.0% |
AAAACCAGGACCACCGCACC+AGG | + | chr5.1:67654480-67654499 | MS.gene81610:CDS | 60.0% | |
TGGAGCGGAGCGGAAAAACC+AGG | + | chr5.1:67654466-67654485 | MS.gene81610:CDS | 60.0% | |
! | GGCCATGCCGACTGCTATAG+TGG | + | chr5.1:67654446-67654465 | MS.gene81610:CDS | 60.0% |
AGGTCACGTCGACGCGTCTC+AGG | + | chr5.1:67654500-67654519 | MS.gene81610:CDS | 65.0% | |
! | AGCATGCACGTGCTGCTGCC+TGG | + | chr5.1:67651106-67651125 | MS.gene81610:intron | 65.0% |
! | ATGCACGTGCTGCTGCCTGG+TGG | + | chr5.1:67651109-67651128 | MS.gene81610:intron | 65.0% |
! | TGAGACGCGTCGACGTGACC+TGG | - | chr5.1:67654501-67654520 | None:intergenic | 65.0% |
GTCGACGTGACCTGGTGCGG+TGG | - | chr5.1:67654493-67654512 | None:intergenic | 70.0% | |
GTGACCTGGTGCGGTGGTCC+TGG | - | chr5.1:67654487-67654506 | None:intergenic | 70.0% | |
! | CGCGTCGACGTGACCTGGTG+CGG | - | chr5.1:67654496-67654515 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 67649059 | 67654548 | 67649059 | ID=MS.gene81610 |
chr5.1 | mRNA | 67649059 | 67654548 | 67649059 | ID=MS.gene81610.t1;Parent=MS.gene81610 |
chr5.1 | exon | 67649059 | 67649274 | 67649059 | ID=MS.gene81610.t1.exon1;Parent=MS.gene81610.t1 |
chr5.1 | CDS | 67649059 | 67649274 | 67649059 | ID=cds.MS.gene81610.t1;Parent=MS.gene81610.t1 |
chr5.1 | exon | 67649366 | 67649578 | 67649366 | ID=MS.gene81610.t1.exon2;Parent=MS.gene81610.t1 |
chr5.1 | CDS | 67649366 | 67649578 | 67649366 | ID=cds.MS.gene81610.t1;Parent=MS.gene81610.t1 |
chr5.1 | exon | 67649665 | 67649865 | 67649665 | ID=MS.gene81610.t1.exon3;Parent=MS.gene81610.t1 |
chr5.1 | CDS | 67649665 | 67649865 | 67649665 | ID=cds.MS.gene81610.t1;Parent=MS.gene81610.t1 |
chr5.1 | exon | 67650233 | 67650487 | 67650233 | ID=MS.gene81610.t1.exon4;Parent=MS.gene81610.t1 |
chr5.1 | CDS | 67650233 | 67650487 | 67650233 | ID=cds.MS.gene81610.t1;Parent=MS.gene81610.t1 |
chr5.1 | exon | 67651723 | 67652349 | 67651723 | ID=MS.gene81610.t1.exon5;Parent=MS.gene81610.t1 |
chr5.1 | CDS | 67651723 | 67652349 | 67651723 | ID=cds.MS.gene81610.t1;Parent=MS.gene81610.t1 |
chr5.1 | exon | 67654363 | 67654548 | 67654363 | ID=MS.gene81610.t1.exon6;Parent=MS.gene81610.t1 |
chr5.1 | CDS | 67654363 | 67654548 | 67654363 | ID=cds.MS.gene81610.t1;Parent=MS.gene81610.t1 |
Gene Sequence |
Protein sequence |