AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51960.t1 MTR_3g010330 94.976 418 6 1 15 417 67 484 0.0 825
MS.gene51960.t1 MTR_3g080810 55.819 421 166 3 14 415 76 495 1.97e-160 461
MS.gene51960.t1 MTR_3g117500 53.901 423 171 6 16 416 67 487 2.00e-152 441
MS.gene51960.t1 MTR_1g088190 55.932 413 161 4 21 414 69 479 2.56e-151 437
MS.gene51960.t1 MTR_8g104820 52.246 423 180 5 15 416 72 493 2.04e-147 428
MS.gene51960.t1 MTR_4g035955 51.442 416 184 4 13 413 54 466 5.62e-141 410
MS.gene51960.t1 MTR_4g035930 50.240 416 189 4 13 413 55 467 6.52e-139 405
MS.gene51960.t1 MTR_4g035975 51.313 419 181 7 14 413 75 489 1.73e-137 403
MS.gene51960.t1 MTR_5g010000 46.209 422 201 7 15 417 82 496 6.37e-119 355
MS.gene51960.t1 MTR_5g009970 44.444 423 209 7 12 415 6 421 1.56e-118 352
MS.gene51960.t1 MTR_5g009970 44.524 420 207 7 15 415 83 495 7.66e-117 350
MS.gene51960.t1 MTR_8g099410 44.651 430 207 9 15 417 70 495 2.54e-112 339
MS.gene51960.t1 MTR_8g099410 44.860 428 205 9 15 415 70 493 4.20e-111 339
MS.gene51960.t1 MTR_3g080190 42.958 426 214 7 15 413 82 505 1.85e-107 327
MS.gene51960.t1 MTR_5g085730 41.395 430 215 9 15 413 73 496 3.67e-107 326
MS.gene51960.t1 MTR_5g009970 42.893 401 203 7 34 415 1 394 1.14e-105 318
MS.gene51960.t1 MTR_5g093590 42.588 425 214 8 15 411 76 498 9.21e-103 314
MS.gene51960.t1 MTR_3g105230 41.379 406 213 6 15 403 72 469 1.26e-102 313
MS.gene51960.t1 MTR_1g037340 43.705 421 211 8 15 414 67 482 3.30e-101 309
MS.gene51960.t1 MTR_3g023740 42.686 417 214 6 15 414 72 480 1.36e-98 303
MS.gene51960.t1 MTR_4g074960 43.294 425 208 10 15 411 71 490 6.92e-97 302
MS.gene51960.t1 MTR_3g113720 39.813 427 219 10 15 411 98 516 1.70e-87 275
MS.gene51960.t1 MTR_1g088190 57.031 256 105 2 21 272 69 323 5.06e-86 266
MS.gene51960.t1 MTR_8g075990 41.218 427 213 12 15 411 104 522 5.46e-83 264
MS.gene51960.t1 MTR_5g009970 42.470 332 168 5 101 415 1 326 6.02e-82 255
MS.gene51960.t1 MTR_0393s0050 87.143 140 3 1 272 396 20 159 1.53e-81 249
MS.gene51960.t1 MTR_2g028480 39.509 448 210 18 16 416 159 592 3.76e-65 219
MS.gene51960.t1 MTR_3g082440 37.273 440 217 19 17 410 162 588 5.26e-62 211
MS.gene51960.t1 MTR_3g090540 33.483 445 236 17 14 410 148 580 1.84e-56 196
MS.gene51960.t1 MTR_7g108925 51.899 158 60 2 272 414 43 199 3.23e-50 169
MS.gene51960.t1 MTR_1g037320 49.080 163 78 3 34 194 1 160 9.05e-32 122
MS.gene51960.t1 MTR_1g037320 35.772 123 63 2 304 411 168 289 5.60e-15 75.5
MS.gene51960.t1 MTR_4g128810 27.686 242 130 7 186 410 117 330 1.95e-15 77.8
MS.gene51960.t1 MTR_7g108920 50.847 59 25 1 182 236 86 144 7.93e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51960.t1 AT1G71380 73.141 417 96 2 14 415 65 480 0.0 621
MS.gene51960.t1 AT1G22880 71.770 418 102 2 14 416 65 481 0.0 610
MS.gene51960.t1 AT1G22880 70.603 398 101 2 34 416 1 397 0.0 570
MS.gene51960.t1 AT4G02290 58.432 421 154 4 13 414 92 510 1.81e-167 480
MS.gene51960.t1 AT1G02800 58.195 421 153 5 13 414 83 499 1.66e-163 469
MS.gene51960.t1 AT1G70710 53.791 422 174 4 15 417 70 489 1.71e-155 449
MS.gene51960.t1 AT4G02290 57.250 400 150 4 34 414 1 398 2.78e-154 442
MS.gene51960.t1 AT1G23210 52.732 421 178 4 15 416 70 488 3.49e-149 432
MS.gene51960.t1 AT1G22880 78.378 259 56 0 14 272 65 323 6.16e-145 416
MS.gene51960.t1 AT4G39010 50.472 424 187 5 15 416 71 493 6.19e-145 422
MS.gene51960.t1 AT4G39000 45.775 426 208 5 13 416 65 489 3.15e-123 366
MS.gene51960.t1 AT4G23560 47.596 416 191 8 15 411 65 472 1.33e-114 344
MS.gene51960.t1 AT4G39010 51.104 317 148 3 15 324 71 387 3.70e-114 339
MS.gene51960.t1 AT4G38990 43.852 431 214 6 13 416 63 492 8.31e-114 342
MS.gene51960.t1 AT4G09740 46.763 417 193 9 15 411 65 472 7.86e-111 334
MS.gene51960.t1 AT2G32990 43.897 426 206 9 15 411 81 502 2.71e-110 334
MS.gene51960.t1 AT1G64390 43.868 424 207 9 15 411 67 486 1.58e-106 327
MS.gene51960.t1 AT4G11050 43.632 424 208 10 15 411 68 487 1.61e-106 325
MS.gene51960.t1 AT4G11050 43.632 424 208 10 15 411 68 487 6.37e-106 326
MS.gene51960.t1 AT4G11050 43.632 424 208 10 15 411 68 487 6.76e-106 326
MS.gene51960.t1 AT3G43860 43.705 421 212 6 12 415 73 485 1.46e-105 321
MS.gene51960.t1 AT3G43860 43.705 421 212 6 12 415 73 485 1.46e-105 321
MS.gene51960.t1 AT2G44540 42.005 419 218 8 14 411 74 488 2.05e-98 303
MS.gene51960.t1 AT2G44550 41.627 418 220 7 14 411 74 487 2.67e-97 300
MS.gene51960.t1 AT2G44570 41.844 423 220 9 14 414 74 492 2.38e-96 297
MS.gene51960.t1 AT2G44560 42.654 422 217 8 14 414 74 491 4.76e-95 294
MS.gene51960.t1 AT1G75680 43.750 416 200 10 15 404 98 505 1.59e-94 293
MS.gene51960.t1 AT1G19940 40.714 420 215 10 15 408 89 500 1.18e-91 286
MS.gene51960.t1 AT1G19940 40.714 420 215 10 15 408 89 500 1.18e-91 286
MS.gene51960.t1 AT1G48930 42.925 424 211 8 15 411 72 491 6.93e-91 287
MS.gene51960.t1 AT1G19940 41.925 322 173 7 15 325 89 407 1.64e-71 231
MS.gene51960.t1 AT4G38990 42.905 296 141 3 13 303 63 335 3.86e-71 228
MS.gene51960.t1 AT2G44570 41.867 332 181 9 14 337 74 401 4.43e-68 222
MS.gene51960.t1 AT4G24260 37.978 445 219 16 16 415 156 588 4.39e-64 216
MS.gene51960.t1 AT5G49720 39.013 446 214 16 16 415 155 588 2.00e-63 215
MS.gene51960.t1 AT1G65610 35.455 440 227 19 17 411 161 588 1.10e-55 194
MS.gene51960.t1 AT4G24260 39.296 341 168 14 16 325 156 488 8.57e-44 159
MS.gene51960.t1 AT4G24260 41.481 270 126 10 16 258 156 420 1.31e-41 153

Find 94 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACAGTTCTCAAGGTATT+TGG 0.188395 3.2:+4067653 None:intergenic
ATGGCTCCAACCAATATATT+AGG 0.202587 3.2:+4067361 None:intergenic
TGCTGTTAAATACTACAATT+TGG 0.250375 3.2:-4068298 MS.gene51960:CDS
CTACAATTTGGCCAAGTCTT+TGG 0.251872 3.2:-4068286 MS.gene51960:CDS
AGCAAGTGCAGCAGCAGTTT+CGG 0.284069 3.2:+4068866 None:intergenic
CCAGAATATGAGCAATAAAA+TGG 0.291892 3.2:+4068711 None:intergenic
TACAATTTGGCCAAGTCTTT+GGG 0.295167 3.2:-4068285 MS.gene51960:CDS
CTGGTTTGGACCTCCAACTA+TGG 0.301617 3.2:+4067342 None:intergenic
CAACACTTGTGATCAACATT+TGG 0.323361 3.2:+4068966 None:intergenic
TTATCCCAGCTGAAGATATC+AGG 0.329473 3.2:+4068249 None:intergenic
TGAATCCTCTTGGGAAAATA+TGG 0.350676 3.2:+4067481 None:intergenic
TCATGGAGCACAATTGAATA+TGG 0.352249 3.2:-4069104 MS.gene51960:CDS
GAATCAGAACCCTAATATAT+TGG 0.355685 3.2:-4067371 MS.gene51960:CDS
AATCTAACATTAATTGTTAC+CGG 0.359003 3.2:+4067225 None:intergenic
TACAACCTATTCCAAGTATA+TGG 0.367719 3.2:-4067720 MS.gene51960:CDS
TAGGGTTCTGATTCATTGAA+TGG 0.377070 3.2:+4067380 None:intergenic
CATCAGGAAATCCGTCGTTC+TGG 0.380884 3.2:+4067323 None:intergenic
CTTTGTAGCTGCCATATACT+TGG 0.384398 3.2:+4067709 None:intergenic
GGAAATCCGTCGTTCTGGTT+TGG 0.384940 3.2:+4067328 None:intergenic
TACATCAATGGTGGGATTGT+TGG 0.387929 3.2:-4067265 MS.gene51960:CDS
GCTCTTGCTTCTTTCATTTG+TGG 0.396038 3.2:+4069068 None:intergenic
TTCGGCAGCAACATCAGAAC+CGG 0.401931 3.2:+4068884 None:intergenic
ACACCAACATAGAGTCTTCC+AGG 0.404144 3.2:+4068996 None:intergenic
TCCTCTGTGGTGAATCCTCT+TGG 0.412922 3.2:+4067471 None:intergenic
CTATAGTCACCGCGATCATC+AGG 0.416806 3.2:+4067307 None:intergenic
CAGTTTGCTTTGCAGTATCA+AGG 0.418073 3.2:-4068768 MS.gene51960:CDS
CCACCATTGATGTAAGTTGC+TGG 0.419287 3.2:+4067274 None:intergenic
TTGCTCATATTCTGGATTCA+AGG 0.420522 3.2:-4068703 MS.gene51960:intron
TGGCTCCAACCAATATATTA+GGG 0.420525 3.2:+4067362 None:intergenic
GGACCTTTAGCGTACTTTGC+CGG 0.422505 3.2:-4067244 MS.gene51960:CDS
ACATACTGAAGATTGCTTGC+AGG 0.422983 3.2:+4067764 None:intergenic
CTAACAGTGTCCATATCTTC+TGG 0.423308 3.2:+4068936 None:intergenic
GTGTTAGCACTTTGTTCCAT+TGG 0.437623 3.2:+4069230 None:intergenic
TGTAGTTGAAGAGGGTGAAT+TGG 0.441166 3.2:+4068016 None:intergenic
TCAGTTCATCCACAGACAAT+AGG 0.447266 3.2:-4067430 MS.gene51960:CDS
TTGGGAAAGACCAGAAGATA+TGG 0.449982 3.2:-4068946 MS.gene51960:CDS
AGCTGCCATATACTTGGAAT+AGG 0.451707 3.2:+4067715 None:intergenic
TTTGTTGAGGACTGCACAAA+AGG 0.452597 3.2:-4068796 MS.gene51960:CDS
AACAAAAGTTTAGAATAAGT+TGG 0.454125 3.2:+4068813 None:intergenic
ATATTGGTTGGAGCCATAGT+TGG 0.454285 3.2:-4067355 MS.gene51960:CDS
AATTGAATATGGAAAGAGAA+TGG 0.462216 3.2:-4069093 MS.gene51960:CDS
ATCAACCTGATATCTTCAGC+TGG 0.462559 3.2:-4068254 MS.gene51960:CDS
TCTTCAGGATGAACTATTGT+GGG 0.468517 3.2:-4068349 MS.gene51960:intron
GTGCACATGTCCTTCTCTCA+AGG 0.474161 3.2:-4068215 MS.gene51960:CDS
AAATGTTGATCACAAGTGTT+GGG 0.476909 3.2:-4068964 MS.gene51960:CDS
CAAATGTTGATCACAAGTGT+TGG 0.484072 3.2:-4068965 MS.gene51960:CDS
ATTGAATATGGAAAGAGAAT+GGG 0.486477 3.2:-4069092 MS.gene51960:CDS
ATTGTTGTTGTGAATGCCAT+TGG 0.494336 3.2:+4069131 None:intergenic
GTCTGTGGCGTGGCGAATTG+CGG 0.497557 3.2:+4069046 None:intergenic
ACAGGAGGCTATTATGATGC+AGG 0.500795 3.2:-4069176 MS.gene51960:CDS
CCTCTGTGGTGAATCCTCTT+GGG 0.506991 3.2:+4067472 None:intergenic
TCACAACAACAATGTTATCA+TGG 0.509771 3.2:-4069121 MS.gene51960:CDS
CAGAACCCTAATATATTGGT+TGG 0.511456 3.2:-4067367 MS.gene51960:CDS
GTGTTGATGTTGCACATTTG+AGG 0.517874 3.2:+4069018 None:intergenic
ATCTTCAGGATGAACTATTG+TGG 0.519125 3.2:-4068350 MS.gene51960:intron
ATCATCAGCTCCCAAAGACT+TGG 0.531480 3.2:+4068275 None:intergenic
GTAGTTGAAGAGGGTGAATT+GGG 0.534837 3.2:+4068017 None:intergenic
ATAAGAACTTTGATCAGTAT+AGG 0.541520 3.2:-4068073 MS.gene51960:CDS
AACTGCTGCTGCACTTGCTG+CGG 0.541749 3.2:-4068862 MS.gene51960:CDS
TATGTATCTTCAAACAATCC+CGG 0.544424 3.2:-4068903 MS.gene51960:CDS
TTGGTTGGAGCCATAGTTGG+AGG 0.545842 3.2:-4067352 MS.gene51960:CDS
CTACAGAGAGCATTGCTGAA+TGG 0.545991 3.2:-4068098 MS.gene51960:intron
CCACAGACAATAGGATGTGA+TGG 0.547733 3.2:-4067421 MS.gene51960:CDS
GAACCAGCAACTTACATCAA+TGG 0.548177 3.2:-4067277 MS.gene51960:CDS
AGCTGGGATAACAAATATGC+TGG 0.549315 3.2:-4068237 MS.gene51960:CDS
GAGAACTGTTGCGAAAAGAC+AGG 0.553255 3.2:-4067642 MS.gene51960:CDS
TTCAACTTACCCTTGAGAGA+AGG 0.570746 3.2:+4068205 None:intergenic
TTGCAGGTGGATTTGACAGG+AGG 0.571495 3.2:-4069191 MS.gene51960:CDS
TTACCGGCAAAGTACGCTAA+AGG 0.575384 3.2:+4067241 None:intergenic
GGAAGACTCTATGTTGGTGT+TGG 0.575499 3.2:-4068993 MS.gene51960:CDS
AACTATTGTGGGGAGCTGCA+TGG 0.591973 3.2:-4068338 MS.gene51960:CDS
TGCACATGTCCTTCTCTCAA+GGG 0.598418 3.2:-4068214 MS.gene51960:intron
CCATCACATCCTATTGTCTG+TGG 0.600403 3.2:+4067421 None:intergenic
GGCTCATACAGTGATTCACT+TGG 0.605518 3.2:-4068747 MS.gene51960:CDS
TCAACCTGATATCTTCAGCT+GGG 0.606032 3.2:-4068253 MS.gene51960:CDS
TGTATACTGTGTAGTTGAAG+AGG 0.614209 3.2:+4068007 None:intergenic
CCAGCAACTTACATCAATGG+TGG 0.615251 3.2:-4067274 MS.gene51960:CDS
AAGCACACATTTAACTGTGG+TGG 0.619659 3.2:-4067689 MS.gene51960:CDS
AAATGTGCAACATCAACACC+TGG 0.628895 3.2:-4069014 MS.gene51960:CDS
TCGGCAGCAACATCAGAACC+GGG 0.629928 3.2:+4068885 None:intergenic
CAGCAACTTACATCAATGGT+GGG 0.637988 3.2:-4067273 MS.gene51960:CDS
ACACCTGGAAGACTCTATGT+TGG 0.645134 3.2:-4068999 MS.gene51960:CDS
CTTCAGGATGAACTATTGTG+GGG 0.648937 3.2:-4068348 MS.gene51960:intron
GTATACTGTGTAGTTGAAGA+GGG 0.651354 3.2:+4068008 None:intergenic
ACATTTGAGGAGATAGTCTG+TGG 0.654390 3.2:+4069031 None:intergenic
CAGACAATAGGATGTGATGG+AGG 0.672550 3.2:-4067418 MS.gene51960:CDS
TGAGGAGATAGTCTGTGGCG+TGG 0.675751 3.2:+4069036 None:intergenic
CCCAAGAGGATTCACCACAG+AGG 0.688585 3.2:-4067472 MS.gene51960:CDS
TCAACTACACAGTATACACA+AGG 0.701067 3.2:-4068002 MS.gene51960:intron
TGTGGATGAACTGATAGTGA+AGG 0.707912 3.2:+4067439 None:intergenic
GACGGATTTCCTGATGATCG+CGG 0.711969 3.2:-4067316 MS.gene51960:CDS
GGAGGTCCAAACCAGAACGA+CGG 0.712912 3.2:-4067334 MS.gene51960:CDS
ACAAAGCACACATTTAACTG+TGG 0.729394 3.2:-4067692 MS.gene51960:CDS
AAGGCAATGAAGATCCTCTG+TGG 0.790898 3.2:+4067458 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAAATTTCAAATCAATA+TGG - chr3.2:4068599-4068618 MS.gene51960:intron 15.0%
!! ACTATAAATATAATAGTTGA+TGG + chr3.2:4068529-4068548 None:intergenic 15.0%
!!! AAAATTTGTTGTAAAATTTC+AGG - chr3.2:4068901-4068920 MS.gene51960:CDS 15.0%
!!! ATAAAATCAATTTTAAACAG+AGG - chr3.2:4067982-4068001 MS.gene51960:intron 15.0%
!!! TAAAATCAATTTTAAACAGA+GGG - chr3.2:4067983-4068002 MS.gene51960:intron 15.0%
!!! TATAGTTAAATATCTAGTTT+TGG - chr3.2:4067847-4067866 MS.gene51960:intron 15.0%
!! AAAGTTTAGACAAAACAAAT+TGG + chr3.2:4068304-4068323 None:intergenic 20.0%
!!! AACAAAAGTTTAGAATAAGT+TGG + chr3.2:4067651-4067670 None:intergenic 20.0%
!!! AACAAATTTTATCAACAAAG+AGG + chr3.2:4068891-4068910 None:intergenic 20.0%
! AATAGGCATTATTTATCTTC+AGG - chr3.2:4068097-4068116 MS.gene51960:intron 25.0%
! AATTGAATATGGAAAGAGAA+TGG - chr3.2:4067368-4067387 MS.gene51960:CDS 25.0%
! ATAAGAACTTTGATCAGTAT+AGG - chr3.2:4068388-4068407 MS.gene51960:intron 25.0%
! ATGAAATCATTCTCTATTCT+TGG + chr3.2:4068565-4068584 None:intergenic 25.0%
! ATTGAATATGGAAAGAGAAT+GGG - chr3.2:4067369-4067388 MS.gene51960:CDS 25.0%
! TCTCTCTAATAGTAAGAAAT+AGG + chr3.2:4068049-4068068 None:intergenic 25.0%
! TGATTCATTGAATGGAAAAA+TGG + chr3.2:4069076-4069095 None:intergenic 25.0%
! TGCTGTTAAATACTACAATT+TGG - chr3.2:4068163-4068182 MS.gene51960:intron 25.0%
!! CTTATTCTAAACTTTTGTTG+AGG - chr3.2:4067652-4067671 MS.gene51960:CDS 25.0%
!! GGCTTATAGAGTATTATAAA+GGG - chr3.2:4068620-4068639 MS.gene51960:intron 25.0%
!! TGGCTTATAGAGTATTATAA+AGG - chr3.2:4068619-4068638 MS.gene51960:intron 25.0%
!! TGTGAAATTCAATTTTCCAA+TGG - chr3.2:4067314-4067333 MS.gene51960:CDS 25.0%
!! TTTCAGGTAGACTATATATT+AGG - chr3.2:4068917-4068936 MS.gene51960:CDS 25.0%
!!! TTTTGGTAGTATCACTATTA+GGG - chr3.2:4067864-4067883 MS.gene51960:intron 25.0%
AAATGTTGATCACAAGTGTT+GGG - chr3.2:4067497-4067516 MS.gene51960:intron 30.0%
ATTGCTTGAATTAATGTGCA+GGG - chr3.2:4068656-4068675 MS.gene51960:intron 30.0%
CCAGAATATGAGCAATAAAA+TGG + chr3.2:4067753-4067772 None:intergenic 30.0%
GAATCAGAACCCTAATATAT+TGG - chr3.2:4069090-4069109 MS.gene51960:CDS 30.0%
TACAACCTATTCCAAGTATA+TGG - chr3.2:4068741-4068760 MS.gene51960:CDS 30.0%
TATGTATCTTCAAACAATCC+CGG - chr3.2:4067558-4067577 MS.gene51960:intron 30.0%
TATTGCTTGAATTAATGTGC+AGG - chr3.2:4068655-4068674 MS.gene51960:intron 30.0%
TCACAACAACAATGTTATCA+TGG - chr3.2:4067340-4067359 MS.gene51960:CDS 30.0%
TCTACTTGTATCGTTCTAAT+AGG - chr3.2:4068080-4068099 MS.gene51960:CDS 30.0%
! CCATTTTATTGCTCATATTC+TGG - chr3.2:4067750-4067769 MS.gene51960:CDS 30.0%
! TTGGTTGTTAAGTTTGAGAT+CGG - chr3.2:4067939-4067958 MS.gene51960:intron 30.0%
! TTTGGTAGTATCACTATTAG+GGG - chr3.2:4067865-4067884 MS.gene51960:intron 30.0%
!! ATACACAAACATTGTTTTGC+AGG - chr3.2:4067254-4067273 MS.gene51960:CDS 30.0%
!! GTTTTGGTAGTATCACTATT+AGG - chr3.2:4067863-4067882 MS.gene51960:intron 30.0%
ACAAAGCACACATTTAACTG+TGG - chr3.2:4068769-4068788 MS.gene51960:CDS 35.0%
ACCATATAGGACATTCTAAG+TGG + chr3.2:4068950-4068969 None:intergenic 35.0%
ATCTTCAGGATGAACTATTG+TGG - chr3.2:4068111-4068130 MS.gene51960:intron 35.0%
ATGGCTCCAACCAATATATT+AGG + chr3.2:4069103-4069122 None:intergenic 35.0%
ATGTCCTATATGGTAGGTTA+TGG - chr3.2:4068956-4068975 MS.gene51960:CDS 35.0%
CAAATGTTGATCACAAGTGT+TGG - chr3.2:4067496-4067515 MS.gene51960:intron 35.0%
CAACACTTGTGATCAACATT+TGG + chr3.2:4067498-4067517 None:intergenic 35.0%
CAGAACCCTAATATATTGGT+TGG - chr3.2:4069094-4069113 MS.gene51960:CDS 35.0%
CTTAGAATGTCCTATATGGT+AGG - chr3.2:4068950-4068969 MS.gene51960:CDS 35.0%
GTATACTGTGTAGTTGAAGA+GGG + chr3.2:4068456-4068475 None:intergenic 35.0%
TACAATTTGGCCAAGTCTTT+GGG - chr3.2:4068176-4068195 MS.gene51960:intron 35.0%
TCAACTACACAGTATACACA+AGG - chr3.2:4068459-4068478 MS.gene51960:intron 35.0%
TCATGGAGCACAATTGAATA+TGG - chr3.2:4067357-4067376 MS.gene51960:CDS 35.0%
TCCACTTAGAATGTCCTATA+TGG - chr3.2:4068946-4068965 MS.gene51960:CDS 35.0%
TCTTCAGGATGAACTATTGT+GGG - chr3.2:4068112-4068131 MS.gene51960:intron 35.0%
TGAATCCTCTTGGGAAAATA+TGG + chr3.2:4068983-4069002 None:intergenic 35.0%
TGGCTCCAACCAATATATTA+GGG + chr3.2:4069102-4069121 None:intergenic 35.0%
TGTATACTGTGTAGTTGAAG+AGG + chr3.2:4068457-4068476 None:intergenic 35.0%
TTGCTCATATTCTGGATTCA+AGG - chr3.2:4067758-4067777 MS.gene51960:CDS 35.0%
TTGCTTGAATTAATGTGCAG+GGG - chr3.2:4068657-4068676 MS.gene51960:intron 35.0%
! ATTGTTGTTGTGAATGCCAT+TGG + chr3.2:4067333-4067352 None:intergenic 35.0%
! TAGGGTTCTGATTCATTGAA+TGG + chr3.2:4069084-4069103 None:intergenic 35.0%
AAATGTGCAACATCAACACC+TGG - chr3.2:4067447-4067466 MS.gene51960:CDS 40.0%
AAGCACACATTTAACTGTGG+TGG - chr3.2:4068772-4068791 MS.gene51960:CDS 40.0%
ACATACTGAAGATTGCTTGC+AGG + chr3.2:4068700-4068719 None:intergenic 40.0%
ACATTTGAGGAGATAGTCTG+TGG + chr3.2:4067433-4067452 None:intergenic 40.0%
AGCTGCCATATACTTGGAAT+AGG + chr3.2:4068749-4068768 None:intergenic 40.0%
AGCTGGGATAACAAATATGC+TGG - chr3.2:4068224-4068243 MS.gene51960:CDS 40.0%
ATCAACCTGATATCTTCAGC+TGG - chr3.2:4068207-4068226 MS.gene51960:intron 40.0%
CAGCAACTTACATCAATGGT+GGG - chr3.2:4069188-4069207 MS.gene51960:CDS 40.0%
CCAATACTCGGATTCTTACT+CGG - chr3.2:4067820-4067839 MS.gene51960:intron 40.0%
CTAACAGTGTCCATATCTTC+TGG + chr3.2:4067528-4067547 None:intergenic 40.0%
CTACAATTTGGCCAAGTCTT+TGG - chr3.2:4068175-4068194 MS.gene51960:intron 40.0%
CTTCAGGATGAACTATTGTG+GGG - chr3.2:4068113-4068132 MS.gene51960:intron 40.0%
CTTTGTAGCTGCCATATACT+TGG + chr3.2:4068755-4068774 None:intergenic 40.0%
GAACCAGCAACTTACATCAA+TGG - chr3.2:4069184-4069203 MS.gene51960:CDS 40.0%
GCTCTTGCTTCTTTCATTTG+TGG + chr3.2:4067396-4067415 None:intergenic 40.0%
GGGTCTGGATTATCTAATGT+AGG - chr3.2:4067885-4067904 MS.gene51960:intron 40.0%
GTAGTTGAAGAGGGTGAATT+GGG + chr3.2:4068447-4068466 None:intergenic 40.0%
TAGTATCACTATTAGGGGTC+TGG - chr3.2:4067870-4067889 MS.gene51960:intron 40.0%
TCAACCTGATATCTTCAGCT+GGG - chr3.2:4068208-4068227 MS.gene51960:intron 40.0%
TCAGTTCATCCACAGACAAT+AGG - chr3.2:4069031-4069050 MS.gene51960:CDS 40.0%
TGCTTGAATTAATGTGCAGG+GGG - chr3.2:4068658-4068677 MS.gene51960:intron 40.0%
TGGACCATAACCTACCATAT+AGG + chr3.2:4068963-4068982 None:intergenic 40.0%
TGTAGTTGAAGAGGGTGAAT+TGG + chr3.2:4068448-4068467 None:intergenic 40.0%
TTATCCCAGCTGAAGATATC+AGG + chr3.2:4068215-4068234 None:intergenic 40.0%
TTCAACTTACCCTTGAGAGA+AGG + chr3.2:4068259-4068278 None:intergenic 40.0%
TTGGGAAAGACCAGAAGATA+TGG - chr3.2:4067515-4067534 MS.gene51960:intron 40.0%
TTTGTTGAGGACTGCACAAA+AGG - chr3.2:4067665-4067684 MS.gene51960:CDS 40.0%
! ATATTGGTTGGAGCCATAGT+TGG - chr3.2:4069106-4069125 MS.gene51960:CDS 40.0%
! ATGGTCCATATTTTCCCAAG+AGG - chr3.2:4068975-4068994 MS.gene51960:CDS 40.0%
! CAGTTTGCTTTGCAGTATCA+AGG - chr3.2:4067693-4067712 MS.gene51960:CDS 40.0%
! CCTAGAGTATCTCCAATACT+CGG - chr3.2:4067808-4067827 MS.gene51960:intron 40.0%
! CTGTGTGATACAGTTTTTCG+AGG - chr3.2:4068020-4068039 MS.gene51960:CDS 40.0%
! GCAACAGTTCTCAAGGTATT+TGG + chr3.2:4068811-4068830 None:intergenic 40.0%
! GTGTTGATGTTGCACATTTG+AGG + chr3.2:4067446-4067465 None:intergenic 40.0%
! TACATCAATGGTGGGATTGT+TGG - chr3.2:4069196-4069215 MS.gene51960:CDS 40.0%
! TCTTTTCGCAACAGTTCTCA+AGG + chr3.2:4068818-4068837 None:intergenic 40.0%
! TGTGGATGAACTGATAGTGA+AGG + chr3.2:4069025-4069044 None:intergenic 40.0%
! TTACACGTAGCAGACAGTTT+TGG - chr3.2:4067920-4067939 MS.gene51960:intron 40.0%
!! CACAAACATTGTTTTGCAGG+TGG - chr3.2:4067257-4067276 MS.gene51960:CDS 40.0%
AAGGCAATGAAGATCCTCTG+TGG + chr3.2:4069006-4069025 None:intergenic 45.0%
ACACCAACATAGAGTCTTCC+AGG + chr3.2:4067468-4067487 None:intergenic 45.0%
ACACCTGGAAGACTCTATGT+TGG - chr3.2:4067462-4067481 MS.gene51960:CDS 45.0%
ACAGGAGGCTATTATGATGC+AGG - chr3.2:4067285-4067304 MS.gene51960:CDS 45.0%
ATCATCAGCTCCCAAAGACT+TGG + chr3.2:4068189-4068208 None:intergenic 45.0%
CAGACAATAGGATGTGATGG+AGG - chr3.2:4069043-4069062 MS.gene51960:CDS 45.0%
CCACAGACAATAGGATGTGA+TGG - chr3.2:4069040-4069059 MS.gene51960:CDS 45.0%
CCACCATTGATGTAAGTTGC+TGG + chr3.2:4069190-4069209 None:intergenic 45.0%
CCAGCAACTTACATCAATGG+TGG - chr3.2:4069187-4069206 MS.gene51960:CDS 45.0%
CCATCACATCCTATTGTCTG+TGG + chr3.2:4069043-4069062 None:intergenic 45.0%
CCGAGTAAGAATCCGAGTAT+TGG + chr3.2:4067823-4067842 None:intergenic 45.0%
GAGAACTGTTGCGAAAAGAC+AGG - chr3.2:4068819-4068838 MS.gene51960:CDS 45.0%
GGAAGACTCTATGTTGGTGT+TGG - chr3.2:4067468-4067487 MS.gene51960:CDS 45.0%
GGCTCATACAGTGATTCACT+TGG - chr3.2:4067714-4067733 MS.gene51960:CDS 45.0%
TGCACATGTCCTTCTCTCAA+GGG - chr3.2:4068247-4068266 MS.gene51960:CDS 45.0%
TTACCGGCAAAGTACGCTAA+AGG + chr3.2:4069223-4069242 None:intergenic 45.0%
!! CCGAGTATTGGAGATACTCT+AGG + chr3.2:4067811-4067830 None:intergenic 45.0%
!! CTACAGAGAGCATTGCTGAA+TGG - chr3.2:4068363-4068382 MS.gene51960:intron 45.0%
!! GTTTTGCAGGTGGATTTGAC+AGG - chr3.2:4067267-4067286 MS.gene51960:CDS 45.0%
AACTATTGTGGGGAGCTGCA+TGG - chr3.2:4068123-4068142 MS.gene51960:intron 50.0%
AGCAAGTGCAGCAGCAGTTT+CGG + chr3.2:4067598-4067617 None:intergenic 50.0%
CATCAGGAAATCCGTCGTTC+TGG + chr3.2:4069141-4069160 None:intergenic 50.0%
CCTCTGTGGTGAATCCTCTT+GGG + chr3.2:4068992-4069011 None:intergenic 50.0%
CTATAGTCACCGCGATCATC+AGG + chr3.2:4069157-4069176 None:intergenic 50.0%
GGACCTTTAGCGTACTTTGC+CGG - chr3.2:4069217-4069236 MS.gene51960:CDS 50.0%
GTGCACATGTCCTTCTCTCA+AGG - chr3.2:4068246-4068265 MS.gene51960:CDS 50.0%
TCCTCTGTGGTGAATCCTCT+TGG + chr3.2:4068993-4069012 None:intergenic 50.0%
TTCGGCAGCAACATCAGAAC+CGG + chr3.2:4067580-4067599 None:intergenic 50.0%
TTGGTTGGAGCCATAGTTGG+AGG - chr3.2:4069109-4069128 MS.gene51960:CDS 50.0%
! GACGGATTTCCTGATGATCG+CGG - chr3.2:4069145-4069164 MS.gene51960:CDS 50.0%
! GGAAATCCGTCGTTCTGGTT+TGG + chr3.2:4069136-4069155 None:intergenic 50.0%
! GGGAGCTGCATGGCTTTTTA+GGG - chr3.2:4068133-4068152 MS.gene51960:intron 50.0%
! TTGCAGGTGGATTTGACAGG+AGG - chr3.2:4067270-4067289 MS.gene51960:CDS 50.0%
!! CTGGTTTGGACCTCCAACTA+TGG + chr3.2:4069122-4069141 None:intergenic 50.0%
CCCAAGAGGATTCACCACAG+AGG - chr3.2:4068989-4069008 MS.gene51960:CDS 55.0%
GGAGGTCCAAACCAGAACGA+CGG - chr3.2:4069127-4069146 MS.gene51960:CDS 55.0%
TCGGCAGCAACATCAGAACC+GGG + chr3.2:4067579-4067598 None:intergenic 55.0%
TGAGGAGATAGTCTGTGGCG+TGG + chr3.2:4067428-4067447 None:intergenic 55.0%
! AACTGCTGCTGCACTTGCTG+CGG - chr3.2:4067599-4067618 MS.gene51960:intron 55.0%
! GGGGAGCTGCATGGCTTTTT+AGG - chr3.2:4068132-4068151 MS.gene51960:intron 55.0%
GTCTGTGGCGTGGCGAATTG+CGG + chr3.2:4067418-4067437 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 4067234 4069249 4067234 ID=MS.gene51960
chr3.2 mRNA 4067234 4069249 4067234 ID=MS.gene51960.t1;Parent=MS.gene51960
chr3.2 exon 4068704 4069249 4068704 ID=MS.gene51960.t1.exon1;Parent=MS.gene51960.t1
chr3.2 CDS 4068704 4069249 4068704 ID=cds.MS.gene51960.t1;Parent=MS.gene51960.t1
chr3.2 exon 4068215 4068364 4068215 ID=MS.gene51960.t1.exon2;Parent=MS.gene51960.t1
chr3.2 CDS 4068215 4068364 4068215 ID=cds.MS.gene51960.t1;Parent=MS.gene51960.t1
chr3.2 exon 4068003 4068114 4068003 ID=MS.gene51960.t1.exon3;Parent=MS.gene51960.t1
chr3.2 CDS 4068003 4068114 4068003 ID=cds.MS.gene51960.t1;Parent=MS.gene51960.t1
chr3.2 exon 4067639 4067806 4067639 ID=MS.gene51960.t1.exon4;Parent=MS.gene51960.t1
chr3.2 CDS 4067639 4067806 4067639 ID=cds.MS.gene51960.t1;Parent=MS.gene51960.t1
chr3.2 exon 4067234 4067511 4067234 ID=MS.gene51960.t1.exon5;Parent=MS.gene51960.t1
chr3.2 CDS 4067234 4067511 4067234 ID=cds.MS.gene51960.t1;Parent=MS.gene51960.t1
Gene Sequence

>MS.gene51960

ATGGAACAAAGTGCTAACACATACACAAACATTGTTTTGCAGGTGGATTTGACAGGAGGCTATTATGATGCAGGAGACAATGTGAAATTCAATTTTCCAATGGCATTCACAACAACAATGTTATCATGGAGCACAATTGAATATGGAAAGAGAATGGGACCACAAATGAAAGAAGCAAGAGCCGCAATTCGCCACGCCACAGACTATCTCCTCAAATGTGCAACATCAACACCTGGAAGACTCTATGTTGGTGTTGGAGATCCAAATGTTGATCACAAGTGTTGGGAAAGACCAGAAGATATGGACACTGTTAGAACTGTTTATTATGTATCTTCAAACAATCCCGGTTCTGATGTTGCTGCCGAAACTGCTGCTGCACTTGCTGCGGCGTCTATTGTTTTTAGAAAAGTTGATCCAACTTATTCTAAACTTTTGTTGAGGACTGCACAAAAGGTTTATCAGTTTGCTTTGCAGTATCAAGGCTCATACAGTGATTCACTTGGTTCTGCTGTTTGTCCATTTTATTGCTCATATTCTGGATTCAAGGTAAAATTTATTTTCTACTGAGTTTTAACCTAGAGTATCTCCAATACTCGGATTCTTACTCGGTTCGTATAGTTAAATATCTAGTTTTGGTAGTATCACTATTAGGGGTCTGGATTATCTAATGTAGGAGAATCACACATTTACACGTAGCAGACAGTTTTGGTTGTTAAGTTTGAGATCGGACATCTCAGATCACACATTCATAAAATCAATTTTAAACAGAGGGTCAAAATCACTAAACTGTGTGATACAGTTTTTCGAGGCAACCTATTTCTTACTATTAGAGAGAGTTTATGTGATTCTACTTGTATCGTTCTAATAGGCATTATTTATCTTCAGGATGAACTATTGTGGGGAGCTGCATGGCTTTTTAGGGCAACAAATGCTGTTAAATACTACAATTTGGCCAAGTCTTTGGGAGCTGATGATCAACCTGATATCTTCAGCTGGGATAACAAATATGCTGGTGCACATGTCCTTCTCTCAAGGGTAAGTTGAATTTCATTGAAAAATATGAATAACCAATTTGTTTTGTCTAAACTTTGCTGATTCACTAGTTTTCTATTGTTGTTTTTAATTGTTACTACAGAGAGCATTGCTGAATGGTGATAAGAACTTTGATCAGTATAGGCAAGAAGCTGATGATTTCATGTGCAAGATCTTGCCCAATTCACCCTCTTCAACTACACAGTATACACAAGGTAAAAGCAACATGACTATCAGCTATTATAATTCGAAAAATGTTACCATCAACTATTATATTTATAGTATTCTAAGTGATTCCAAGAATAGAGAATGATTTCATGAAAATGTAAAATGACATAAATTTCAAATCAATATGGCTTATAGAGTATTATAAAGGGCGTTGTATCATGTATTGCTTGAATTAATGTGCAGGGGGACTAATGTTCAAGTTACCTGCAAGCAATCTTCAGTATGTGACATCTATAACATTCTTACTTACAACCTATTCCAAGTATATGGCAGCTACAAAGCACACATTTAACTGTGGTGGCGTCTTTGTCACTCCAAATACCTTGAGAACTGTTGCGAAAAGACAGGCAAGTCTTATTATTATTTTAACAAAAAAGTTGTAACAATCTCTTCTCCTCTTTGTTGATAAAATTTGTTGTAAAATTTCAGGTAGACTATATATTAGGTGAAAATCCACTTAGAATGTCCTATATGGTAGGTTATGGTCCATATTTTCCCAAGAGGATTCACCACAGAGGATCTTCATTGCCTTCACTATCAGTTCATCCACAGACAATAGGATGTGATGGAGGTTTCAATCCATTTTTCCATTCAATGAATCAGAACCCTAATATATTGGTTGGAGCCATAGTTGGAGGTCCAAACCAGAACGACGGATTTCCTGATGATCGCGGTGACTATAGTCATTCAGAACCAGCAACTTACATCAATGGTGGGATTGTTGGACCTTTAGCGTACTTTGCCGGTAACAATTAA
Protein sequence

>MS.gene51960.t1

MEQSANTYTNIVLQVDLTGGYYDAGDNVKFNFPMAFTTTMLSWSTIEYGKRMGPQMKEARAAIRHATDYLLKCATSTPGRLYVGVGDPNVDHKCWERPEDMDTVRTVYYVSSNNPGSDVAAETAAALAAASIVFRKVDPTYSKLLLRTAQKVYQFALQYQGSYSDSLGSAVCPFYCSYSGFKDELLWGAAWLFRATNAVKYYNLAKSLGADDQPDIFSWDNKYAGAHVLLSRRALLNGDKNFDQYRQEADDFMCKILPNSPSSTTQYTQGGLMFKLPASNLQYVTSITFLLTTYSKYMAATKHTFNCGGVFVTPNTLRTVAKRQASYGPYFPKRIHHRGSSLPSLSVHPQTIGCDGGFNPFFHSMNQNPNILVGAIVGGPNQNDGFPDDRGDYSHSEPATYINGGIVGPLAYFAGNN