Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50877.t1 | XP_013459054.1 | 92.3 | 483 | 16 | 2 | 1 | 462 | 1 | 483 | 1.70E-261 | 911.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50877.t1 | Q8VYG3 | 66.7 | 462 | 132 | 3 | 21 | 460 | 24 | 485 | 5.8e-181 | 635.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50877.t1 | A0A072UTZ1 | 92.3 | 483 | 16 | 2 | 1 | 462 | 1 | 483 | 1.2e-261 | 911.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50877.t1 | MTR_3g023740 | 92.340 | 483 | 16 | 2 | 1 | 462 | 1 | 483 | 0.0 | 922 |
MS.gene50877.t1 | MTR_3g105230 | 83.795 | 469 | 55 | 2 | 1 | 448 | 1 | 469 | 0.0 | 833 |
MS.gene50877.t1 | MTR_5g009970 | 46.916 | 454 | 217 | 6 | 29 | 458 | 40 | 493 | 3.89e-142 | 417 |
MS.gene50877.t1 | MTR_5g010000 | 46.256 | 454 | 220 | 5 | 29 | 458 | 39 | 492 | 9.53e-137 | 403 |
MS.gene50877.t1 | MTR_5g085730 | 41.884 | 499 | 252 | 8 | 1 | 461 | 1 | 499 | 8.20e-129 | 383 |
MS.gene50877.t1 | MTR_5g093590 | 43.312 | 471 | 229 | 5 | 29 | 461 | 33 | 503 | 9.65e-128 | 380 |
MS.gene50877.t1 | MTR_3g080190 | 43.524 | 471 | 229 | 6 | 29 | 462 | 39 | 509 | 2.11e-127 | 380 |
MS.gene50877.t1 | MTR_8g099410 | 43.497 | 469 | 228 | 7 | 27 | 459 | 25 | 492 | 3.93e-126 | 376 |
MS.gene50877.t1 | MTR_8g104820 | 43.506 | 462 | 223 | 10 | 30 | 456 | 30 | 488 | 1.56e-125 | 374 |
MS.gene50877.t1 | MTR_3g080810 | 42.585 | 472 | 235 | 7 | 18 | 456 | 23 | 491 | 1.84e-125 | 374 |
MS.gene50877.t1 | MTR_8g099410 | 43.497 | 469 | 228 | 7 | 27 | 459 | 25 | 492 | 9.73e-125 | 376 |
MS.gene50877.t1 | MTR_3g117500 | 43.167 | 461 | 226 | 8 | 30 | 456 | 24 | 482 | 2.15e-122 | 365 |
MS.gene50877.t1 | MTR_5g009970 | 45.411 | 414 | 202 | 6 | 69 | 458 | 6 | 419 | 1.06e-120 | 359 |
MS.gene50877.t1 | MTR_4g035955 | 42.918 | 466 | 229 | 7 | 22 | 456 | 5 | 464 | 2.33e-119 | 357 |
MS.gene50877.t1 | MTR_3g010330 | 42.241 | 464 | 237 | 6 | 25 | 459 | 20 | 481 | 2.67e-117 | 352 |
MS.gene50877.t1 | MTR_4g074960 | 41.365 | 469 | 237 | 8 | 29 | 460 | 27 | 494 | 4.13e-115 | 351 |
MS.gene50877.t1 | MTR_4g035930 | 40.389 | 463 | 246 | 5 | 22 | 456 | 5 | 465 | 1.04e-113 | 343 |
MS.gene50877.t1 | MTR_4g035975 | 42.004 | 469 | 230 | 12 | 30 | 460 | 27 | 491 | 3.82e-113 | 342 |
MS.gene50877.t1 | MTR_1g088190 | 42.117 | 463 | 213 | 9 | 30 | 459 | 39 | 479 | 1.85e-109 | 332 |
MS.gene50877.t1 | MTR_1g037340 | 41.522 | 460 | 237 | 6 | 30 | 459 | 25 | 482 | 2.31e-108 | 329 |
MS.gene50877.t1 | MTR_5g009970 | 43.878 | 392 | 196 | 6 | 91 | 458 | 1 | 392 | 2.31e-108 | 327 |
MS.gene50877.t1 | MTR_3g113720 | 38.462 | 468 | 245 | 9 | 31 | 460 | 58 | 520 | 1.24e-103 | 319 |
MS.gene50877.t1 | MTR_8g075990 | 37.821 | 468 | 248 | 9 | 31 | 460 | 64 | 526 | 4.19e-92 | 289 |
MS.gene50877.t1 | MTR_5g009970 | 44.753 | 324 | 166 | 4 | 148 | 458 | 1 | 324 | 6.66e-87 | 269 |
MS.gene50877.t1 | MTR_2g028480 | 36.253 | 491 | 242 | 13 | 30 | 461 | 111 | 589 | 9.80e-83 | 267 |
MS.gene50877.t1 | MTR_3g090540 | 33.265 | 490 | 258 | 13 | 29 | 461 | 106 | 583 | 4.02e-76 | 249 |
MS.gene50877.t1 | MTR_3g082440 | 36.049 | 491 | 240 | 17 | 30 | 461 | 116 | 591 | 1.30e-75 | 249 |
MS.gene50877.t1 | MTR_1g088190 | 41.118 | 304 | 126 | 7 | 30 | 301 | 39 | 321 | 5.14e-59 | 197 |
MS.gene50877.t1 | MTR_1g111340 | 50.909 | 165 | 37 | 3 | 236 | 390 | 1 | 131 | 5.00e-41 | 143 |
MS.gene50877.t1 | MTR_7g108925 | 43.558 | 163 | 89 | 3 | 298 | 459 | 39 | 199 | 4.86e-37 | 135 |
MS.gene50877.t1 | MTR_4g128810 | 26.056 | 426 | 202 | 14 | 43 | 461 | 14 | 333 | 3.72e-31 | 123 |
MS.gene50877.t1 | MTR_1g037320 | 39.583 | 192 | 100 | 3 | 91 | 267 | 1 | 191 | 2.24e-27 | 111 |
MS.gene50877.t1 | MTR_1g037320 | 42.623 | 122 | 68 | 2 | 336 | 456 | 169 | 289 | 4.33e-24 | 102 |
MS.gene50877.t1 | MTR_0393s0050 | 44.186 | 129 | 71 | 1 | 310 | 437 | 27 | 155 | 5.33e-26 | 104 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50877.t1 | AT3G43860 | 66.667 | 462 | 132 | 3 | 21 | 460 | 24 | 485 | 0.0 | 625 |
MS.gene50877.t1 | AT3G43860 | 66.667 | 462 | 132 | 3 | 21 | 460 | 24 | 485 | 0.0 | 625 |
MS.gene50877.t1 | AT4G23560 | 46.476 | 454 | 218 | 6 | 31 | 460 | 24 | 476 | 2.29e-131 | 388 |
MS.gene50877.t1 | AT4G09740 | 45.833 | 456 | 222 | 6 | 29 | 460 | 22 | 476 | 1.32e-129 | 384 |
MS.gene50877.t1 | AT4G11050 | 44.754 | 467 | 221 | 7 | 30 | 460 | 26 | 491 | 2.09e-129 | 385 |
MS.gene50877.t1 | AT4G11050 | 44.754 | 467 | 221 | 7 | 30 | 460 | 26 | 491 | 1.20e-128 | 386 |
MS.gene50877.t1 | AT4G11050 | 44.754 | 467 | 221 | 7 | 30 | 460 | 26 | 491 | 1.51e-128 | 386 |
MS.gene50877.t1 | AT4G02290 | 44.372 | 462 | 222 | 7 | 30 | 459 | 52 | 510 | 3.91e-126 | 376 |
MS.gene50877.t1 | AT1G64390 | 43.897 | 467 | 225 | 7 | 30 | 460 | 25 | 490 | 5.66e-125 | 377 |
MS.gene50877.t1 | AT1G70710 | 41.582 | 493 | 249 | 10 | 1 | 460 | 1 | 487 | 1.78e-123 | 369 |
MS.gene50877.t1 | AT2G32990 | 42.949 | 468 | 230 | 6 | 27 | 457 | 36 | 503 | 2.31e-123 | 369 |
MS.gene50877.t1 | AT1G02800 | 44.156 | 462 | 221 | 8 | 30 | 459 | 43 | 499 | 3.17e-121 | 363 |
MS.gene50877.t1 | AT1G23210 | 42.026 | 464 | 232 | 9 | 30 | 460 | 28 | 487 | 8.58e-120 | 359 |
MS.gene50877.t1 | AT1G22880 | 42.826 | 460 | 231 | 8 | 30 | 460 | 24 | 480 | 5.88e-118 | 354 |
MS.gene50877.t1 | AT1G71380 | 42.826 | 460 | 231 | 8 | 30 | 460 | 24 | 480 | 8.78e-118 | 354 |
MS.gene50877.t1 | AT4G39010 | 40.592 | 473 | 244 | 9 | 23 | 460 | 22 | 492 | 5.76e-116 | 350 |
MS.gene50877.t1 | AT1G19940 | 41.703 | 458 | 228 | 9 | 30 | 453 | 48 | 500 | 1.78e-109 | 333 |
MS.gene50877.t1 | AT1G19940 | 41.703 | 458 | 228 | 9 | 30 | 453 | 48 | 500 | 1.78e-109 | 333 |
MS.gene50877.t1 | AT2G44550 | 39.669 | 484 | 258 | 8 | 3 | 456 | 8 | 487 | 2.05e-109 | 332 |
MS.gene50877.t1 | AT2G44540 | 39.425 | 487 | 256 | 9 | 5 | 458 | 10 | 490 | 2.15e-108 | 330 |
MS.gene50877.t1 | AT2G44560 | 39.796 | 490 | 260 | 8 | 1 | 459 | 6 | 491 | 4.00e-107 | 327 |
MS.gene50877.t1 | AT2G44570 | 41.113 | 467 | 241 | 8 | 25 | 459 | 28 | 492 | 3.60e-106 | 324 |
MS.gene50877.t1 | AT1G48930 | 40.860 | 465 | 238 | 7 | 29 | 457 | 29 | 492 | 3.81e-106 | 328 |
MS.gene50877.t1 | AT4G39000 | 38.065 | 465 | 253 | 5 | 30 | 460 | 25 | 488 | 1.11e-102 | 315 |
MS.gene50877.t1 | AT1G75680 | 41.228 | 456 | 223 | 10 | 31 | 449 | 58 | 505 | 2.35e-102 | 315 |
MS.gene50877.t1 | AT4G38990 | 38.593 | 469 | 242 | 10 | 30 | 456 | 23 | 487 | 2.63e-99 | 306 |
MS.gene50877.t1 | AT4G02290 | 41.147 | 401 | 201 | 7 | 91 | 459 | 1 | 398 | 4.21e-93 | 288 |
MS.gene50877.t1 | AT1G22880 | 40.100 | 399 | 207 | 8 | 91 | 460 | 1 | 396 | 1.57e-90 | 281 |
MS.gene50877.t1 | AT4G39010 | 38.753 | 369 | 191 | 7 | 23 | 357 | 22 | 389 | 2.04e-86 | 270 |
MS.gene50877.t1 | AT5G49720 | 36.049 | 491 | 243 | 15 | 30 | 461 | 108 | 586 | 4.66e-81 | 263 |
MS.gene50877.t1 | AT1G19940 | 39.612 | 361 | 183 | 7 | 30 | 356 | 48 | 407 | 3.33e-75 | 242 |
MS.gene50877.t1 | AT1G65610 | 36.196 | 489 | 241 | 17 | 30 | 461 | 116 | 590 | 2.42e-74 | 245 |
MS.gene50877.t1 | AT4G24260 | 34.924 | 524 | 255 | 17 | 9 | 461 | 78 | 586 | 6.63e-74 | 244 |
MS.gene50877.t1 | AT2G44570 | 39.669 | 363 | 186 | 7 | 25 | 356 | 28 | 388 | 2.39e-71 | 231 |
MS.gene50877.t1 | AT1G22880 | 44.000 | 300 | 138 | 6 | 30 | 301 | 24 | 321 | 1.19e-70 | 228 |
MS.gene50877.t1 | AT4G38990 | 36.336 | 333 | 166 | 6 | 30 | 335 | 23 | 336 | 3.04e-58 | 196 |
MS.gene50877.t1 | AT4G24260 | 31.981 | 419 | 206 | 14 | 9 | 356 | 78 | 488 | 4.11e-43 | 159 |
MS.gene50877.t1 | AT4G24260 | 32.410 | 361 | 168 | 12 | 9 | 301 | 78 | 430 | 3.82e-39 | 147 |
Find 108 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAGCAAAGCTTGCTTCTT+TGG | 0.193643 | 3.1:-14238805 | MS.gene50877:CDS |
TCTTCGTTTGGTGACAAATT+TGG | 0.202470 | 3.1:+14239002 | None:intergenic |
TTATATACTTACTTGCATTT+TGG | 0.202567 | 3.1:+14239577 | None:intergenic |
AAACAGATGGATTACATATT+AGG | 0.203643 | 3.1:-14239107 | MS.gene50877:intron |
GGAAACTCCCTTCCAGTAAT+AGG | 0.223572 | 3.1:-14241148 | MS.gene50877:CDS |
ATTGAATAGGTTGACCTATC+AGG | 0.261586 | 3.1:-14240849 | MS.gene50877:intron |
TCTCCTCAATAAAGCAAAAT+TGG | 0.261612 | 3.1:-14240448 | MS.gene50877:intron |
AGGAGACGGCGAGCATATTT+AGG | 0.264621 | 3.1:+14240465 | None:intergenic |
CCAAATCCACATGAGCTAAC+TGG | 0.270045 | 3.1:-14238933 | MS.gene50877:CDS |
AGATCATACATGGTAGGATT+TGG | 0.292392 | 3.1:-14239068 | MS.gene50877:CDS |
CTAGCAAAGCTTGCTTCTTT+GGG | 0.299112 | 3.1:-14238804 | MS.gene50877:CDS |
GCTGGAGACAATGTGAAATA+TGG | 0.300456 | 3.1:-14240813 | MS.gene50877:CDS |
CCCTTCTACTGCTCCTATTC+AGG | 0.300909 | 3.1:-14240199 | MS.gene50877:CDS |
CCAGTTAGCTCATGTGGATT+TGG | 0.301161 | 3.1:+14238933 | None:intergenic |
TCTCCAAGGGACCCTATTAC+TGG | 0.323891 | 3.1:+14241136 | None:intergenic |
GTCAAATTGATTTGCTTGTA+AGG | 0.327863 | 3.1:+14239841 | None:intergenic |
TTCTTAGAGGCGCAAAGATC+AGG | 0.334942 | 3.1:-14241170 | MS.gene50877:CDS |
ATTTGCTTGTAAGGACTATC+AGG | 0.344561 | 3.1:+14239850 | None:intergenic |
AAAATCTCTCATCTTCTTAG+AGG | 0.350453 | 3.1:-14241183 | MS.gene50877:CDS |
AACAGATGGATTACATATTA+GGG | 0.358207 | 3.1:-14239106 | MS.gene50877:intron |
ACCATGTATGATCTTCCTTC+AGG | 0.359145 | 3.1:+14239077 | None:intergenic |
ATTTGAAGCAACAAATGAAA+TGG | 0.361468 | 3.1:-14240730 | MS.gene50877:CDS |
TGGATAATAAAAGAGTATAT+TGG | 0.363178 | 3.1:-14241289 | MS.gene50877:CDS |
GGAAACATGACACTTGTTAA+AGG | 0.365753 | 3.1:-14241233 | MS.gene50877:CDS |
GCCTGAATAGGAGCAGTAGA+AGG | 0.378778 | 3.1:+14240198 | None:intergenic |
CAACAATGGTGATCATCAAC+TGG | 0.379312 | 3.1:+14240618 | None:intergenic |
ATATTCAAAATGCCATTAGA+TGG | 0.385203 | 3.1:-14240704 | MS.gene50877:CDS |
AAGCAAATCAATTTGACTCT+TGG | 0.389184 | 3.1:-14239835 | MS.gene50877:intron |
TTGGCACTGAAGCACCTCTA+TGG | 0.398776 | 3.1:+14239021 | None:intergenic |
GATCATACATGGTAGGATTT+GGG | 0.403815 | 3.1:-14239067 | MS.gene50877:CDS |
TATGTGCAAGGTTCGGTCTT+AGG | 0.410154 | 3.1:+14238852 | None:intergenic |
CAAATCCACATGAGCTAACT+GGG | 0.410353 | 3.1:-14238932 | MS.gene50877:CDS |
CTATGGTGAGCTTGTGTTGG+TGG | 0.424826 | 3.1:+14239038 | None:intergenic |
GAATTGGCAAAATCTCATAA+AGG | 0.424938 | 3.1:-14240241 | MS.gene50877:CDS |
TCACAGTTACTACATTATCA+TGG | 0.431674 | 3.1:-14240776 | MS.gene50877:CDS |
GGACAGTTTATCTCTTCGTT+TGG | 0.432535 | 3.1:+14238990 | None:intergenic |
GAAACTCCCTTCCAGTAATA+GGG | 0.434684 | 3.1:-14241147 | MS.gene50877:CDS |
AGCTGAAACTTCTGCTGCTA+TGG | 0.438179 | 3.1:-14240520 | MS.gene50877:CDS |
ATAATCCGTACCCCATCTAA+TGG | 0.439713 | 3.1:+14240692 | None:intergenic |
TAGCCATTTCTTAAAGCTTG+TGG | 0.441135 | 3.1:+14238968 | None:intergenic |
GTCCCACAAGCTTTAAGAAA+TGG | 0.446283 | 3.1:-14238971 | MS.gene50877:CDS |
ACATACATTATAGCCTGAAT+AGG | 0.446803 | 3.1:+14240186 | None:intergenic |
TAACAAGTGTCATGTTTCCT+TGG | 0.449294 | 3.1:+14241237 | None:intergenic |
TTGAACTTGTCGTTGATGTC+AGG | 0.451159 | 3.1:+14238894 | None:intergenic |
TTTGAAGCAACAAATGAAAT+GGG | 0.463240 | 3.1:-14240729 | MS.gene50877:CDS |
TCTCATAAAGGAACCTATGA+TGG | 0.468029 | 3.1:-14240229 | MS.gene50877:CDS |
ACATGGCTTGCTTTGTTCCA+AGG | 0.473298 | 3.1:-14241254 | MS.gene50877:CDS |
GGAGACTCAGCAGTGGATGA+TGG | 0.473612 | 3.1:-14241113 | MS.gene50877:CDS |
AGCCATTTCTTAAAGCTTGT+GGG | 0.474167 | 3.1:+14238969 | None:intergenic |
ACTTGCCAAATATAATCAAA+AGG | 0.476084 | 3.1:-14239648 | MS.gene50877:CDS |
TTGAATAGGTTGACCTATCA+GGG | 0.476637 | 3.1:-14240848 | MS.gene50877:intron |
GAGCTAACTGGGGCCATTGT+TGG | 0.483453 | 3.1:-14238921 | MS.gene50877:CDS |
GAAGGGACATTCTCCATCAT+AGG | 0.487500 | 3.1:+14240216 | None:intergenic |
TATTCAAAATGCCATTAGAT+GGG | 0.489997 | 3.1:-14240703 | MS.gene50877:CDS |
AGTTGATGATCACCATTGTT+GGG | 0.498423 | 3.1:-14240616 | MS.gene50877:CDS |
CAGTTGATGATCACCATTGT+TGG | 0.502750 | 3.1:-14240617 | MS.gene50877:CDS |
TGCTAGAACACCGGCTGCAA+GGG | 0.505101 | 3.1:+14238821 | None:intergenic |
TAAAGGTCAATTTAATTACA+AGG | 0.507603 | 3.1:-14241216 | MS.gene50877:CDS |
CTTCCAGTAATAGGGTCCCT+TGG | 0.507808 | 3.1:-14241139 | MS.gene50877:CDS |
AGCAAGCCATGTTGCAATGA+CGG | 0.524115 | 3.1:+14241265 | None:intergenic |
CTGCTGAGTCTCCTCTCCAA+GGG | 0.526075 | 3.1:+14241123 | None:intergenic |
CACAGTTACTACATTATCAT+GGG | 0.526401 | 3.1:-14240775 | MS.gene50877:CDS |
CCTCTATGGTGAGCTTGTGT+TGG | 0.530222 | 3.1:+14239035 | None:intergenic |
TTGCTAGAACACCGGCTGCA+AGG | 0.530745 | 3.1:+14238820 | None:intergenic |
TACGTTAATTCCCTTGCAGC+CGG | 0.531438 | 3.1:-14238831 | MS.gene50877:CDS |
AAATGCCATTAGATGGGGTA+CGG | 0.536678 | 3.1:-14240697 | MS.gene50877:CDS |
CTAACTGGGGCCATTGTTGG+TGG | 0.545679 | 3.1:-14238918 | MS.gene50877:CDS |
GCTGGTGGCATATTGTGTAT+TGG | 0.548328 | 3.1:+14239703 | None:intergenic |
TTTGGCAAAATCAAGGAGAT+GGG | 0.548916 | 3.1:+14239595 | None:intergenic |
CTGGAGACAATGTGAAATAT+GGG | 0.550838 | 3.1:-14240812 | MS.gene50877:CDS |
ATGGCCCCAGTTAGCTCATG+TGG | 0.556380 | 3.1:+14238927 | None:intergenic |
AGCAAGCTTTGCTAGAACAC+CGG | 0.556441 | 3.1:+14238812 | None:intergenic |
TCTTAGAGGCGCAAAGATCA+GGG | 0.558185 | 3.1:-14241169 | MS.gene50877:CDS |
CTTGAAGCATTTAAAGCACA+TGG | 0.561349 | 3.1:-14239898 | MS.gene50877:CDS |
ATATATAGGATGAGCTAATG+TGG | 0.565889 | 3.1:-14240080 | MS.gene50877:intron |
ACTGCTGAGTCTCCTCTCCA+AGG | 0.567602 | 3.1:+14241122 | None:intergenic |
GGGTTTATTCATATGAGAGA+TGG | 0.573447 | 3.1:-14239728 | MS.gene50877:CDS |
TATAATCAAAAGGTCAAATG+TGG | 0.574640 | 3.1:-14239638 | MS.gene50877:CDS |
ATTAACGTATGTGCAAGGTT+CGG | 0.574763 | 3.1:+14238845 | None:intergenic |
CATGGCTATACATGGCAACA+AGG | 0.579656 | 3.1:-14240050 | MS.gene50877:CDS |
TCCTGAAGGAAGATCATACA+TGG | 0.586107 | 3.1:-14239078 | MS.gene50877:CDS |
GGCTGCAACATGGCTATACA+TGG | 0.586171 | 3.1:-14240058 | MS.gene50877:CDS |
TCAGCTGCAATCTCAGTACC+AGG | 0.587163 | 3.1:+14240537 | None:intergenic |
TATATAGGATGAGCTAATGT+GGG | 0.588691 | 3.1:-14240079 | MS.gene50877:intron |
CAAGGGACCCTATTACTGGA+AGG | 0.589819 | 3.1:+14241140 | None:intergenic |
CCTGAATAGGAGCAGTAGAA+GGG | 0.590602 | 3.1:+14240199 | None:intergenic |
CCAACACAAGCTCACCATAG+AGG | 0.591866 | 3.1:-14239035 | MS.gene50877:CDS |
GATGTCAGGTCCACCAACAA+TGG | 0.594292 | 3.1:+14238908 | None:intergenic |
AAGGGACCCTATTACTGGAA+GGG | 0.614059 | 3.1:+14241141 | None:intergenic |
AGCTAATGTGGGCTGCAACA+TGG | 0.614595 | 3.1:-14240068 | MS.gene50877:CDS |
GAAGGAAGATCATACATGGT+AGG | 0.615068 | 3.1:-14239074 | MS.gene50877:CDS |
GTAGTAACTGTGAATGCCAT+TGG | 0.617815 | 3.1:+14240786 | None:intergenic |
ATTGGACCGTCATTGCAACA+TGG | 0.620258 | 3.1:-14241271 | MS.gene50877:CDS |
AGTGAACAAGAAAGATGTGC+TGG | 0.624046 | 3.1:+14239685 | None:intergenic |
AGTAATAGGGTCCCTTGGAG+AGG | 0.629528 | 3.1:-14241134 | MS.gene50877:CDS |
TGTGAAATATGGGCTACCAA+TGG | 0.631971 | 3.1:-14240802 | MS.gene50877:CDS |
GCTTGTAAGGACTATCAGGA+AGG | 0.637627 | 3.1:+14239854 | None:intergenic |
ATTCAAAATGCCATTAGATG+GGG | 0.646428 | 3.1:-14240702 | MS.gene50877:CDS |
AGGGAATTAACGTATGTGCA+AGG | 0.656102 | 3.1:+14238840 | None:intergenic |
AACAATGGTGATCATCAACT+GGG | 0.657794 | 3.1:+14240619 | None:intergenic |
TTTCTGGTGGTGCCCAACAA+TGG | 0.671282 | 3.1:+14240604 | None:intergenic |
TGAATAGGTTGACCTATCAG+GGG | 0.682641 | 3.1:-14240847 | MS.gene50877:intron |
TTGGAGAGGAGACTCAGCAG+TGG | 0.683745 | 3.1:-14241120 | MS.gene50877:CDS |
GAATAGGTTGACCTATCAGG+GGG | 0.686550 | 3.1:-14240846 | MS.gene50877:intron |
AGTTACTACATTATCATGGG+CGG | 0.687711 | 3.1:-14240772 | MS.gene50877:CDS |
TTAATTGATAGTAACACACC+TGG | 0.700118 | 3.1:-14240555 | MS.gene50877:CDS |
GAACAAGAAAGATGTGCTGG+TGG | 0.714032 | 3.1:+14239688 | None:intergenic |
AAATCCACATGAGCTAACTG+GGG | 0.756843 | 3.1:-14238931 | MS.gene50877:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAATAATGTATTTTCTTA+AGG | + | chr3.1:14240555-14240574 | None:intergenic | 10.0% |
!!! | TTAATAATGTATTTTCTTAA+GGG | + | chr3.1:14240554-14240573 | None:intergenic | 10.0% |
!! | ATATTTAAATATGATTATGC+AGG | - | chr3.1:14240338-14240357 | MS.gene50877:intron | 15.0% |
!!! | GATAATTTAACTTTTTCTAA+TGG | - | chr3.1:14239154-14239173 | MS.gene50877:intron | 15.0% |
!!! | TAATAATGTATTTTCTTAAG+GGG | + | chr3.1:14240553-14240572 | None:intergenic | 15.0% |
!!! | TACATATAATCTATTTCTTT+GGG | + | chr3.1:14239440-14239459 | None:intergenic | 15.0% |
!!! | TTGATTTTATTGAATTGAAT+AGG | - | chr3.1:14239228-14239247 | MS.gene50877:intron | 15.0% |
!! | AAGAAATAGATTATATGTAG+AGG | - | chr3.1:14239441-14239460 | MS.gene50877:intron | 20.0% |
!! | ACGTACAAAATGAATAATTT+GGG | - | chr3.1:14239196-14239215 | MS.gene50877:intron | 20.0% |
!! | ACTAAGAGTGAATTAATATT+GGG | - | chr3.1:14239958-14239977 | MS.gene50877:intron | 20.0% |
!! | ATGTAATTGGTATATTGTTT+AGG | + | chr3.1:14239709-14239728 | None:intergenic | 20.0% |
!! | CTCAAAACAAAATCATTATT+AGG | - | chr3.1:14239027-14239046 | MS.gene50877:CDS | 20.0% |
!! | TAAAGGTCAATTTAATTACA+AGG | - | chr3.1:14238874-14238893 | MS.gene50877:CDS | 20.0% |
!! | TACGTACAAAATGAATAATT+TGG | - | chr3.1:14239195-14239214 | MS.gene50877:intron | 20.0% |
!! | TTTATCTCTAAATATTAGTG+AGG | - | chr3.1:14239082-14239101 | MS.gene50877:CDS | 20.0% |
!!! | CATTTTTCTATACATGTAAT+TGG | + | chr3.1:14239722-14239741 | None:intergenic | 20.0% |
!!! | CTACATATAATCTATTTCTT+TGG | + | chr3.1:14239441-14239460 | None:intergenic | 20.0% |
!!! | TGGATAATAAAAGAGTATAT+TGG | - | chr3.1:14238801-14238820 | MS.gene50877:CDS | 20.0% |
!!! | TTATATACTTACTTGCATTT+TGG | + | chr3.1:14240516-14240535 | None:intergenic | 20.0% |
!!! | TTTGACCTTTTGATTATATT+TGG | + | chr3.1:14240450-14240469 | None:intergenic | 20.0% |
! | AATAGATTATATGTAGAGGT+AGG | - | chr3.1:14239445-14239464 | MS.gene50877:intron | 25.0% |
! | ACTTGCCAAATATAATCAAA+AGG | - | chr3.1:14240442-14240461 | MS.gene50877:intron | 25.0% |
! | ATAGATTATATGTAGAGGTA+GGG | - | chr3.1:14239446-14239465 | MS.gene50877:intron | 25.0% |
! | ATATTACCAACCAATACTAT+AGG | + | chr3.1:14239788-14239807 | None:intergenic | 25.0% |
! | ATATTCAAAATGCCATTAGA+TGG | - | chr3.1:14239386-14239405 | MS.gene50877:intron | 25.0% |
! | ATCAACATATATAATCGTAG+AGG | - | chr3.1:14240881-14240900 | MS.gene50877:intron | 25.0% |
! | ATCAATATGCCTAAAAACAA+TGG | + | chr3.1:14239605-14239624 | None:intergenic | 25.0% |
! | ATGAAATTGATCTTCAATGT+TGG | + | chr3.1:14239108-14239127 | None:intergenic | 25.0% |
! | ATTGAAGTAACCTATAGTAT+TGG | - | chr3.1:14239775-14239794 | MS.gene50877:intron | 25.0% |
! | CACTAAGAGTGAATTAATAT+TGG | - | chr3.1:14239957-14239976 | MS.gene50877:intron | 25.0% |
! | GAATATTAGAGATGTCAAAA+TGG | + | chr3.1:14240640-14240659 | None:intergenic | 25.0% |
! | TATAATCAAAAGGTCAAATG+TGG | - | chr3.1:14240452-14240471 | MS.gene50877:CDS | 25.0% |
! | TATTCAAAATGCCATTAGAT+GGG | - | chr3.1:14239387-14239406 | MS.gene50877:intron | 25.0% |
! | TTAAATATGATTATGCAGGT+GGG | - | chr3.1:14240342-14240361 | MS.gene50877:intron | 25.0% |
! | TTAATGTGATGCGTATATAT+AGG | - | chr3.1:14239996-14240015 | MS.gene50877:CDS | 25.0% |
! | TTTAAATATGATTATGCAGG+TGG | - | chr3.1:14240341-14240360 | MS.gene50877:intron | 25.0% |
!! | ATTTGAAGCAACAAATGAAA+TGG | - | chr3.1:14239360-14239379 | MS.gene50877:intron | 25.0% |
!! | TTTGAAGCAACAAATGAAAT+GGG | - | chr3.1:14239361-14239380 | MS.gene50877:intron | 25.0% |
!!! | AAACAGATGGATTACATATT+AGG | - | chr3.1:14240983-14241002 | MS.gene50877:intron | 25.0% |
!!! | AACAGATGGATTACATATTA+GGG | - | chr3.1:14240984-14241003 | MS.gene50877:intron | 25.0% |
!!! | ATACCAATTTTGCTTTATTG+AGG | + | chr3.1:14239648-14239667 | None:intergenic | 25.0% |
!!! | TTACATTTTGAAGGTCAAAA+AGG | - | chr3.1:14240168-14240187 | MS.gene50877:intron | 25.0% |
AAAATCTCTCATCTTCTTAG+AGG | - | chr3.1:14238907-14238926 | MS.gene50877:CDS | 30.0% | |
AAGCAAATCAATTTGACTCT+TGG | - | chr3.1:14240255-14240274 | MS.gene50877:intron | 30.0% | |
ACATACATTATAGCCTGAAT+AGG | + | chr3.1:14239907-14239926 | None:intergenic | 30.0% | |
AGCATATGTAATAGCAACTT+TGG | + | chr3.1:14240909-14240928 | None:intergenic | 30.0% | |
AGTTGCTATAACATGTGATT+TGG | - | chr3.1:14240847-14240866 | MS.gene50877:intron | 30.0% | |
ATATATAGGATGAGCTAATG+TGG | - | chr3.1:14240010-14240029 | MS.gene50877:CDS | 30.0% | |
ATATTAGGGAAAAATCCTGA+AGG | - | chr3.1:14240998-14241017 | MS.gene50877:intron | 30.0% | |
ATCACATGTTATAGCAACTT+TGG | + | chr3.1:14240846-14240865 | None:intergenic | 30.0% | |
ATTCAAAATGCCATTAGATG+GGG | - | chr3.1:14239388-14239407 | MS.gene50877:intron | 30.0% | |
CACAGTTACTACATTATCAT+GGG | - | chr3.1:14239315-14239334 | MS.gene50877:intron | 30.0% | |
CACTCTTAGTGAATTAAGAA+AGG | + | chr3.1:14239948-14239967 | None:intergenic | 30.0% | |
GAATTGGCAAAATCTCATAA+AGG | - | chr3.1:14239849-14239868 | MS.gene50877:CDS | 30.0% | |
TAGAGTGACTATCTAATACT+TGG | - | chr3.1:14240955-14240974 | MS.gene50877:intron | 30.0% | |
TAGATTATATGTAGAGGTAG+GGG | - | chr3.1:14239447-14239466 | MS.gene50877:intron | 30.0% | |
TATATAGGATGAGCTAATGT+GGG | - | chr3.1:14240011-14240030 | MS.gene50877:CDS | 30.0% | |
TCACAGTTACTACATTATCA+TGG | - | chr3.1:14239314-14239333 | MS.gene50877:intron | 30.0% | |
TCTCCTCAATAAAGCAAAAT+TGG | - | chr3.1:14239642-14239661 | MS.gene50877:CDS | 30.0% | |
! | CTCTTTGTCTTCATATTTTC+TGG | + | chr3.1:14239505-14239524 | None:intergenic | 30.0% |
! | TTAATTGATAGTAACACACC+TGG | - | chr3.1:14239535-14239554 | MS.gene50877:intron | 30.0% |
! | TTTGTCTTCATATTTTCTGG+TGG | + | chr3.1:14239502-14239521 | None:intergenic | 30.0% |
!! | AAGTAACCTATAGTATTGGT+TGG | - | chr3.1:14239779-14239798 | MS.gene50877:intron | 30.0% |
!! | ATTTTGCTTTATTGAGGAGA+CGG | + | chr3.1:14239642-14239661 | None:intergenic | 30.0% |
!! | GTCAAATTGATTTGCTTGTA+AGG | + | chr3.1:14240252-14240271 | None:intergenic | 30.0% |
AACAATGGTGATCATCAACT+GGG | + | chr3.1:14239474-14239493 | None:intergenic | 35.0% | |
AGATCATACATGGTAGGATT+TGG | - | chr3.1:14241022-14241041 | MS.gene50877:intron | 35.0% | |
AGCCATTTCTTAAAGCTTGT+GGG | + | chr3.1:14241124-14241143 | None:intergenic | 35.0% | |
AGTTACTACATTATCATGGG+CGG | - | chr3.1:14239318-14239337 | MS.gene50877:intron | 35.0% | |
ATACTTGGATGGTAAACAGA+TGG | - | chr3.1:14240970-14240989 | MS.gene50877:intron | 35.0% | |
ATTAACGTATGTGCAAGGTT+CGG | + | chr3.1:14241248-14241267 | None:intergenic | 35.0% | |
ATTTGCTTGTAAGGACTATC+AGG | + | chr3.1:14240243-14240262 | None:intergenic | 35.0% | |
CTGGAGACAATGTGAAATAT+GGG | - | chr3.1:14239278-14239297 | MS.gene50877:intron | 35.0% | |
CTTGAACTCCAGCATATTTA+AGG | + | chr3.1:14240134-14240153 | None:intergenic | 35.0% | |
GATCATACATGGTAGGATTT+GGG | - | chr3.1:14241023-14241042 | MS.gene50877:intron | 35.0% | |
GGGTTTATTCATATGAGAGA+TGG | - | chr3.1:14240362-14240381 | MS.gene50877:intron | 35.0% | |
GTGACTATCTAATACTTGGA+TGG | - | chr3.1:14240959-14240978 | MS.gene50877:intron | 35.0% | |
TAACAAGTGTCATGTTTCCT+TGG | + | chr3.1:14238856-14238875 | None:intergenic | 35.0% | |
TAGCCATTTCTTAAAGCTTG+TGG | + | chr3.1:14241125-14241144 | None:intergenic | 35.0% | |
TAGTGTAGCAGAATTCAGTT+GGG | - | chr3.1:14240107-14240126 | MS.gene50877:intron | 35.0% | |
TCTCATAAAGGAACCTATGA+TGG | - | chr3.1:14239861-14239880 | MS.gene50877:CDS | 35.0% | |
TTTGGCAAAATCAAGGAGAT+GGG | + | chr3.1:14240498-14240517 | None:intergenic | 35.0% | |
! | ATTGAATAGGTTGACCTATC+AGG | - | chr3.1:14239241-14239260 | MS.gene50877:intron | 35.0% |
! | CTCACTCAGTTACATTTTGA+AGG | - | chr3.1:14240159-14240178 | MS.gene50877:intron | 35.0% |
! | CTTGAAGCATTTAAAGCACA+TGG | - | chr3.1:14240192-14240211 | MS.gene50877:CDS | 35.0% |
! | GGAAACATGACACTTGTTAA+AGG | - | chr3.1:14238857-14238876 | MS.gene50877:CDS | 35.0% |
! | TCTTCGTTTGGTGACAAATT+TGG | + | chr3.1:14241091-14241110 | None:intergenic | 35.0% |
! | TTGAATAGGTTGACCTATCA+GGG | - | chr3.1:14239242-14239261 | MS.gene50877:intron | 35.0% |
! | TTTTGGCAAAATCAAGGAGA+TGG | + | chr3.1:14240499-14240518 | None:intergenic | 35.0% |
!! | AGTTGATGATCACCATTGTT+GGG | - | chr3.1:14239474-14239493 | MS.gene50877:intron | 35.0% |
!! | CTGCTTCTTCCATTGTTTTT+AGG | - | chr3.1:14239593-14239612 | MS.gene50877:CDS | 35.0% |
!! | CTTGCATTTTGGCAAAATCA+AGG | + | chr3.1:14240505-14240524 | None:intergenic | 35.0% |
AAATCCACATGAGCTAACTG+GGG | - | chr3.1:14241159-14241178 | MS.gene50877:CDS | 40.0% | |
AAATGCCATTAGATGGGGTA+CGG | - | chr3.1:14239393-14239412 | MS.gene50877:intron | 40.0% | |
ACCATGTATGATCTTCCTTC+AGG | + | chr3.1:14241016-14241035 | None:intergenic | 40.0% | |
AGGGAATTAACGTATGTGCA+AGG | + | chr3.1:14241253-14241272 | None:intergenic | 40.0% | |
AGTGAACAAGAAAGATGTGC+TGG | + | chr3.1:14240408-14240427 | None:intergenic | 40.0% | |
AGTTGGGACCTTAAATATGC+TGG | - | chr3.1:14240123-14240142 | MS.gene50877:intron | 40.0% | |
ATAATCCGTACCCCATCTAA+TGG | + | chr3.1:14239401-14239420 | None:intergenic | 40.0% | |
CAAATCCACATGAGCTAACT+GGG | - | chr3.1:14241158-14241177 | MS.gene50877:CDS | 40.0% | |
CAACAATGGTGATCATCAAC+TGG | + | chr3.1:14239475-14239494 | None:intergenic | 40.0% | |
CATCATAATATCCCCCTGAT+AGG | + | chr3.1:14239258-14239277 | None:intergenic | 40.0% | |
CGAAAAGCTGCTAGGAAATT+GGG | + | chr3.1:14239830-14239849 | None:intergenic | 40.0% | |
CTAGTGTAGCAGAATTCAGT+TGG | - | chr3.1:14240106-14240125 | MS.gene50877:intron | 40.0% | |
GAAACTCCCTTCCAGTAATA+GGG | - | chr3.1:14238943-14238962 | MS.gene50877:CDS | 40.0% | |
GAAGGAAGATCATACATGGT+AGG | - | chr3.1:14241016-14241035 | MS.gene50877:intron | 40.0% | |
GCTGCAACATCATACTACAT+CGG | + | chr3.1:14240728-14240747 | None:intergenic | 40.0% | |
GCTGGAGACAATGTGAAATA+TGG | - | chr3.1:14239277-14239296 | MS.gene50877:intron | 40.0% | |
GGACAGTTTATCTCTTCGTT+TGG | + | chr3.1:14241103-14241122 | None:intergenic | 40.0% | |
GTAGTAACTGTGAATGCCAT+TGG | + | chr3.1:14239307-14239326 | None:intergenic | 40.0% | |
TCCTGAAGGAAGATCATACA+TGG | - | chr3.1:14241012-14241031 | MS.gene50877:intron | 40.0% | |
TCGAAAAGCTGCTAGGAAAT+TGG | + | chr3.1:14239831-14239850 | None:intergenic | 40.0% | |
TTGAACTTGTCGTTGATGTC+AGG | + | chr3.1:14241199-14241218 | None:intergenic | 40.0% | |
! | CTAGCAAAGCTTGCTTCTTT+GGG | - | chr3.1:14241286-14241305 | MS.gene50877:CDS | 40.0% |
! | TCTAGCAAAGCTTGCTTCTT+TGG | - | chr3.1:14241285-14241304 | MS.gene50877:CDS | 40.0% |
! | TGAATAGGTTGACCTATCAG+GGG | - | chr3.1:14239243-14239262 | MS.gene50877:intron | 40.0% |
! | TGTGAAATATGGGCTACCAA+TGG | - | chr3.1:14239288-14239307 | MS.gene50877:intron | 40.0% |
! | TTCCTAGCAGCTTTTCGAAT+TGG | - | chr3.1:14239833-14239852 | MS.gene50877:intron | 40.0% |
!! | ATTGTGGTATGGTGTTGTCA+CGG | + | chr3.1:14240813-14240832 | None:intergenic | 40.0% |
!! | CAGTTGATGATCACCATTGT+TGG | - | chr3.1:14239473-14239492 | MS.gene50877:intron | 40.0% |
!! | GTCCCACAAGCTTTAAGAAA+TGG | - | chr3.1:14241119-14241138 | MS.gene50877:CDS | 40.0% |
AAGGGACCCTATTACTGGAA+GGG | + | chr3.1:14238952-14238971 | None:intergenic | 45.0% | |
ACACCATACCACAATCGTAG+AGG | - | chr3.1:14240818-14240837 | MS.gene50877:CDS | 45.0% | |
AGCAAGCCATGTTGCAATGA+CGG | + | chr3.1:14238828-14238847 | None:intergenic | 45.0% | |
AGCAAGCTTTGCTAGAACAC+CGG | + | chr3.1:14241281-14241300 | None:intergenic | 45.0% | |
AGCTGAAACTTCTGCTGCTA+TGG | - | chr3.1:14239570-14239589 | MS.gene50877:intron | 45.0% | |
ATTGGACCGTCATTGCAACA+TGG | - | chr3.1:14238819-14238838 | MS.gene50877:CDS | 45.0% | |
CATGGCTATACATGGCAACA+AGG | - | chr3.1:14240040-14240059 | MS.gene50877:CDS | 45.0% | |
CCAAATCCACATGAGCTAAC+TGG | - | chr3.1:14241157-14241176 | MS.gene50877:CDS | 45.0% | |
CCAGTTAGCTCATGTGGATT+TGG | + | chr3.1:14241160-14241179 | None:intergenic | 45.0% | |
CCTGAATAGGAGCAGTAGAA+GGG | + | chr3.1:14239894-14239913 | None:intergenic | 45.0% | |
CTTTGGATCCTCTACGATTG+TGG | + | chr3.1:14240829-14240848 | None:intergenic | 45.0% | |
GAACAAGAAAGATGTGCTGG+TGG | + | chr3.1:14240405-14240424 | None:intergenic | 45.0% | |
GAAGGGACATTCTCCATCAT+AGG | + | chr3.1:14239877-14239896 | None:intergenic | 45.0% | |
GATCCTCTACGATTGTGGTA+TGG | + | chr3.1:14240824-14240843 | None:intergenic | 45.0% | |
GCTGGTGGCATATTGTGTAT+TGG | + | chr3.1:14240390-14240409 | None:intergenic | 45.0% | |
GCTTGTAAGGACTATCAGGA+AGG | + | chr3.1:14240239-14240258 | None:intergenic | 45.0% | |
GGAAACTCCCTTCCAGTAAT+AGG | - | chr3.1:14238942-14238961 | MS.gene50877:CDS | 45.0% | |
TACGTTAATTCCCTTGCAGC+CGG | - | chr3.1:14241259-14241278 | MS.gene50877:CDS | 45.0% | |
TCAGGGGGATATTATGATGC+TGG | - | chr3.1:14239259-14239278 | MS.gene50877:intron | 45.0% | |
TGCCAATTCGAAAAGCTGCT+AGG | + | chr3.1:14239838-14239857 | None:intergenic | 45.0% | |
! | GAATAGGTTGACCTATCAGG+GGG | - | chr3.1:14239244-14239263 | MS.gene50877:intron | 45.0% |
! | TATGTGCAAGGTTCGGTCTT+AGG | + | chr3.1:14241241-14241260 | None:intergenic | 45.0% |
! | TCTTAGAGGCGCAAAGATCA+GGG | - | chr3.1:14238921-14238940 | MS.gene50877:CDS | 45.0% |
! | TGATGTTGCAGCTTTAGCGA+CGG | - | chr3.1:14240736-14240755 | MS.gene50877:CDS | 45.0% |
! | TTCTTAGAGGCGCAAAGATC+AGG | - | chr3.1:14238920-14238939 | MS.gene50877:CDS | 45.0% |
!! | ACATGGCTTGCTTTGTTCCA+AGG | - | chr3.1:14238836-14238855 | MS.gene50877:CDS | 45.0% |
AGGAGACGGCGAGCATATTT+AGG | + | chr3.1:14239628-14239647 | None:intergenic | 50.0% | |
AGTAATAGGGTCCCTTGGAG+AGG | - | chr3.1:14238956-14238975 | MS.gene50877:CDS | 50.0% | |
CAAGGGACCCTATTACTGGA+AGG | + | chr3.1:14238953-14238972 | None:intergenic | 50.0% | |
CCAACACAAGCTCACCATAG+AGG | - | chr3.1:14241055-14241074 | MS.gene50877:intron | 50.0% | |
CCCTTCTACTGCTCCTATTC+AGG | - | chr3.1:14239891-14239910 | MS.gene50877:CDS | 50.0% | |
CCTCTATGGTGAGCTTGTGT+TGG | + | chr3.1:14241058-14241077 | None:intergenic | 50.0% | |
CTATGGTGAGCTTGTGTTGG+TGG | + | chr3.1:14241055-14241074 | None:intergenic | 50.0% | |
CTTCCAGTAATAGGGTCCCT+TGG | - | chr3.1:14238951-14238970 | MS.gene50877:CDS | 50.0% | |
GATGTCAGGTCCACCAACAA+TGG | + | chr3.1:14241185-14241204 | None:intergenic | 50.0% | |
GCCTGAATAGGAGCAGTAGA+AGG | + | chr3.1:14239895-14239914 | None:intergenic | 50.0% | |
GGCTGCAACATGGCTATACA+TGG | - | chr3.1:14240032-14240051 | MS.gene50877:CDS | 50.0% | |
TCAGCTGCAATCTCAGTACC+AGG | + | chr3.1:14239556-14239575 | None:intergenic | 50.0% | |
TCTCCAAGGGACCCTATTAC+TGG | + | chr3.1:14238957-14238976 | None:intergenic | 50.0% | |
! | AGCTAATGTGGGCTGCAACA+TGG | - | chr3.1:14240022-14240041 | MS.gene50877:CDS | 50.0% |
! | TTGGCACTGAAGCACCTCTA+TGG | + | chr3.1:14241072-14241091 | None:intergenic | 50.0% |
! | TTTCTGGTGGTGCCCAACAA+TGG | + | chr3.1:14239489-14239508 | None:intergenic | 50.0% |
ACTGCTGAGTCTCCTCTCCA+AGG | + | chr3.1:14238971-14238990 | None:intergenic | 55.0% | |
ATGGCCCCAGTTAGCTCATG+TGG | + | chr3.1:14241166-14241185 | None:intergenic | 55.0% | |
CTAACTGGGGCCATTGTTGG+TGG | - | chr3.1:14241172-14241191 | MS.gene50877:CDS | 55.0% | |
CTGCTGAGTCTCCTCTCCAA+GGG | + | chr3.1:14238970-14238989 | None:intergenic | 55.0% | |
GAGCTAACTGGGGCCATTGT+TGG | - | chr3.1:14241169-14241188 | MS.gene50877:CDS | 55.0% | |
GGAGACTCAGCAGTGGATGA+TGG | - | chr3.1:14238977-14238996 | MS.gene50877:CDS | 55.0% | |
TTGGAGAGGAGACTCAGCAG+TGG | - | chr3.1:14238970-14238989 | MS.gene50877:CDS | 55.0% | |
! | TGCTAGAACACCGGCTGCAA+GGG | + | chr3.1:14241272-14241291 | None:intergenic | 55.0% |
! | TTGCTAGAACACCGGCTGCA+AGG | + | chr3.1:14241273-14241292 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 14238800 | 14241312 | 14238800 | ID=MS.gene50877 |
chr3.1 | mRNA | 14238800 | 14241312 | 14238800 | ID=MS.gene50877.t1;Parent=MS.gene50877 |
chr3.1 | exon | 14241100 | 14241312 | 14241100 | ID=MS.gene50877.t1.exon1;Parent=MS.gene50877.t1 |
chr3.1 | CDS | 14241100 | 14241312 | 14241100 | ID=cds.MS.gene50877.t1;Parent=MS.gene50877.t1 |
chr3.1 | exon | 14240679 | 14240862 | 14240679 | ID=MS.gene50877.t1.exon2;Parent=MS.gene50877.t1 |
chr3.1 | CDS | 14240679 | 14240862 | 14240679 | ID=cds.MS.gene50877.t1;Parent=MS.gene50877.t1 |
chr3.1 | exon | 14240449 | 14240645 | 14240449 | ID=MS.gene50877.t1.exon3;Parent=MS.gene50877.t1 |
chr3.1 | CDS | 14240449 | 14240645 | 14240449 | ID=cds.MS.gene50877.t1;Parent=MS.gene50877.t1 |
chr3.1 | exon | 14240192 | 14240269 | 14240192 | ID=MS.gene50877.t1.exon4;Parent=MS.gene50877.t1 |
chr3.1 | CDS | 14240192 | 14240269 | 14240192 | ID=cds.MS.gene50877.t1;Parent=MS.gene50877.t1 |
chr3.1 | exon | 14239989 | 14240094 | 14239989 | ID=MS.gene50877.t1.exon5;Parent=MS.gene50877.t1 |
chr3.1 | CDS | 14239989 | 14240094 | 14239989 | ID=cds.MS.gene50877.t1;Parent=MS.gene50877.t1 |
chr3.1 | exon | 14239836 | 14239958 | 14239836 | ID=MS.gene50877.t1.exon6;Parent=MS.gene50877.t1 |
chr3.1 | CDS | 14239836 | 14239958 | 14239836 | ID=cds.MS.gene50877.t1;Parent=MS.gene50877.t1 |
chr3.1 | exon | 14239589 | 14239752 | 14239589 | ID=MS.gene50877.t1.exon7;Parent=MS.gene50877.t1 |
chr3.1 | CDS | 14239589 | 14239752 | 14239589 | ID=cds.MS.gene50877.t1;Parent=MS.gene50877.t1 |
chr3.1 | exon | 14238800 | 14239123 | 14238800 | ID=MS.gene50877.t1.exon8;Parent=MS.gene50877.t1 |
chr3.1 | CDS | 14238800 | 14239123 | 14238800 | ID=cds.MS.gene50877.t1;Parent=MS.gene50877.t1 |
Gene Sequence |
Protein sequence |