AlfalfaGEDB | MS.gene013348

M. sativa cultivar XinJiangDaYe / MS.gene013348

KEGG: K10355
GO: -
PFAM: PF00022.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013348.t1	XP_012571874.1	100	377	0	0	1	377	1	377	4.80E-217	763.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013348.t1	P53492	98.4	377	6	0	1	377	1	377	4.1e-217	755.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013348.t1	G7JAX4	100.0	377	0	0	1	377	1	377	3.4e-217	763.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene013348	MS.gene86676	PPI
MS.gene013348	MS.gene014281	PPI
MS.gene013348	MS.gene065414	PPI
MS.gene45491	MS.gene013348	PPI
MS.gene013348	MS.gene46685	PPI
MS.gene013348	MS.gene053110	PPI
MS.gene022650	MS.gene013348	PPI
MS.gene013348	MS.gene032698	PPI
MS.gene017992	MS.gene013348	PPI
MS.gene064894	MS.gene013348	PPI
MS.gene77958	MS.gene013348	PPI
MS.gene79962	MS.gene013348	PPI
MS.gene013348	MS.gene04628	PPI
MS.gene013348	MS.gene024155	PPI
MS.gene013348	MS.gene55068	PPI
MS.gene31154	MS.gene013348	PPI
MS.gene044849	MS.gene013348	PPI
MS.gene013348	MS.gene30959	PPI
MS.gene055437	MS.gene013348	PPI
MS.gene013348	MS.gene68222	PPI
MS.gene013348	MS.gene37081	PPI
MS.gene013348	MS.gene86783	PPI
MS.gene013348	MS.gene052120	PPI
MS.gene033590	MS.gene013348	PPI
MS.gene013348	MS.gene063165	PPI
MS.gene013348	MS.gene52664	PPI
MS.gene013348	MS.gene000108	PPI
MS.gene001874	MS.gene013348	PPI
MS.gene013348	MS.gene037838	PPI
MS.gene45493	MS.gene013348	PPI
MS.gene82765	MS.gene013348	PPI
MS.gene92731	MS.gene013348	PPI
MS.gene034501	MS.gene013348	PPI
MS.gene013348	MS.gene055991	PPI
MS.gene013348	MS.gene37274	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013348.t1	MTR_3g095530	100.000	377	0	0	1	377	1	377	0.0	783
MS.gene013348.t1	MTR_0015s0130	95.756	377	16	0	1	377	1	377	0.0	763
MS.gene013348.t1	MTR_7g026230	96.021	377	15	0	1	377	1	377	0.0	762
MS.gene013348.t1	MTR_7g093260	95.756	377	16	0	1	377	1	377	0.0	761
MS.gene013348.t1	MTR_6g004000	95.491	377	17	0	1	377	1	377	0.0	761
MS.gene013348.t1	MTR_2g096840	94.960	377	19	0	1	377	1	377	0.0	761
MS.gene013348.t1	MTR_2g008050	94.695	377	20	0	1	377	1	377	0.0	754
MS.gene013348.t1	MTR_7g027185	43.799	379	199	3	10	374	7	385	3.83e-121	355
MS.gene013348.t1	MTR_7g027185	45.070	355	182	2	10	351	7	361	1.94e-118	348
MS.gene013348.t1	MTR_7g027185	48.208	307	157	1	10	314	7	313	9.99e-111	326
MS.gene013348.t1	MTR_5g066400	37.360	447	206	12	1	376	1	444	7.43e-91	280
MS.gene013348.t1	MTR_8g464900	36.659	431	200	11	1	361	1	428	3.17e-84	263
MS.gene013348.t1	MTR_5g066400	34.753	446	191	12	1	376	1	416	4.03e-78	246
MS.gene013348.t1	MTR_8g089630	34.474	409	222	8	10	372	10	418	4.24e-72	231
MS.gene013348.t1	MTR_3g030550	37.105	380	213	9	7	377	1	363	2.05e-68	220
MS.gene013348.t1	MTR_5g066400	34.000	400	193	11	1	332	1	397	1.22e-66	217
MS.gene013348.t1	MTR_2g445210	28.132	423	238	7	8	366	6	426	1.50e-55	189
MS.gene013348.t1	MTR_8g007440	33.206	262	152	5	77	319	9	266	4.35e-44	154
MS.gene013348.t1	MTR_2g445210	26.882	372	206	7	8	315	6	375	6.14e-42	151
MS.gene013348.t1	MTR_3g010170	30.976	297	181	9	91	371	179	467	1.26e-39	147
MS.gene013348.t1	MTR_8g070520	32.082	293	172	10	91	366	187	469	3.90e-37	140
MS.gene013348.t1	MTR_8g070520	31.655	278	164	9	91	352	187	454	1.44e-33	130
MS.gene013348.t1	MTR_3g067945	30.556	252	156	7	9	245	21	268	8.01e-24	103
MS.gene013348.t1	MTR_3g067945	34.426	122	77	2	250	368	586	707	6.27e-16	79.7
MS.gene013348.t1	MTR_8g008540	72.973	37	10	0	340	376	41	77	2.58e-13	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013348.t1	AT5G09810	98.408	377	6	0	1	377	1	377	0.0	774
MS.gene013348.t1	AT3G53750	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene013348.t1	AT3G53750	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene013348.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene013348.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene013348.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene013348.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene013348.t1	AT3G12110	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene013348.t1	AT3G46520	94.430	377	21	0	1	377	1	377	0.0	749
MS.gene013348.t1	AT3G46520	94.430	377	21	0	1	377	1	377	0.0	749
MS.gene013348.t1	AT1G49240	93.369	377	25	0	1	377	1	377	0.0	749
MS.gene013348.t1	AT5G59370	94.164	377	22	0	1	377	1	377	0.0	748
MS.gene013348.t1	AT5G59370	94.164	377	22	0	1	377	1	377	0.0	748
MS.gene013348.t1	AT3G18780	93.103	377	26	0	1	377	1	377	0.0	747
MS.gene013348.t1	AT3G18780	93.103	377	26	0	1	377	1	377	0.0	747
MS.gene013348.t1	AT3G18780	92.521	361	27	0	1	361	1	361	0.0	707
MS.gene013348.t1	AT2G42100	84.511	368	57	0	10	377	11	378	0.0	674
MS.gene013348.t1	AT2G42090	71.622	370	100	1	7	376	1	365	0.0	569
MS.gene013348.t1	AT2G42170	78.313	332	69	1	46	377	1	329	0.0	560
MS.gene013348.t1	AT2G42170	78.313	332	69	1	46	377	1	329	0.0	560
MS.gene013348.t1	AT2G42170	78.526	312	64	1	46	357	1	309	0.0	523
MS.gene013348.t1	AT2G42170	78.526	312	64	1	46	357	1	309	0.0	523
MS.gene013348.t1	AT2G42170	78.319	226	46	1	152	377	9	231	2.42e-131	375
MS.gene013348.t1	AT3G27000	44.591	379	196	4	10	374	7	385	1.12e-122	360
MS.gene013348.t1	AT1G18450	38.202	445	201	11	1	376	1	440	8.62e-95	290
MS.gene013348.t1	AT1G13180	34.867	413	215	10	10	372	9	417	1.55e-72	233
MS.gene013348.t1	AT3G60830	37.467	379	213	9	7	377	1	363	1.66e-66	215
MS.gene013348.t1	AT3G33520	30.404	421	235	7	10	377	5	420	3.61e-59	197
MS.gene013348.t1	AT5G56180	30.928	291	175	9	91	364	50	331	2.01e-35	132
MS.gene013348.t1	AT5G56180	30.928	291	175	9	91	364	182	463	1.17e-34	133
MS.gene013348.t1	AT3G12380	29.572	257	158	6	9	245	21	274	3.50e-26	110
MS.gene013348.t1	AT3G12380	34.426	122	77	1	250	368	595	716	6.04e-16	80.1
MS.gene013348.t1	AT3G12380	29.412	255	155	6	9	245	21	268	1.77e-25	108
MS.gene013348.t1	AT3G12380	34.426	122	77	1	250	368	589	710	5.80e-16	80.1
MS.gene013348.t1	AT1G73910	35.862	145	74	3	1	129	1	142	2.69e-23	95.1
MS.gene013348.t1	AT1G73910	35.862	145	74	3	1	129	1	142	2.69e-23	95.1
MS.gene013348.t1	AT5G56180	31.683	202	115	7	91	281	182	371	4.62e-19	88.2
MS.gene013348.t1	AT1G73910	29.268	123	71	2	1	107	1	123	2.86e-12	65.1

Find 119 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAAAGTCTCAAACATGATT+TGG	0.224034	3.4:+86756548	None:intergenic
AGAAGCACTGGGTGCTCTTC+AGG	0.266274	3.4:+86756616	None:intergenic
GAGAGTAAGAATACCTCTTT+TGG	0.276320	3.4:+86756729	None:intergenic
GATGGTTGGAAAAGGACTTC+TGG	0.306272	3.4:+86756054	None:intergenic
AGCACGGTATTGTCAGTAAC+TGG	0.314467	3.4:-86756693	MS.gene013348:CDS
ACAGGTATTGTGTTGGATTC+CGG	0.317257	3.4:-86756381	MS.gene013348:intron
CTGACAATACCGTGCTCAAT+GGG	0.336851	3.4:+86756700	None:intergenic
ATCCTTCGTTTGGATCTTGC+TGG	0.344358	3.4:-86756303	MS.gene013348:CDS
TCCTAGCAGCATGAAGATTA+AGG	0.346598	3.4:-86755863	MS.gene013348:CDS
GGTGGTTCAACTATGTTTCC+TGG	0.355516	3.4:-86755925	MS.gene013348:CDS
TGTGTGCAGGCTGGATTTGC+TGG	0.360977	3.4:-86756862	MS.gene013348:intron
GAAAGTCTCAAACATGATTT+GGG	0.367813	3.4:+86756549	None:intergenic
GCTTCCATTCCGATCATTGA+TGG	0.371444	3.4:+86756036	None:intergenic
CTATTGGCCTTTGGGTTAAG+TGG	0.372320	3.4:+86756583	None:intergenic
TACTGGTGTCATGGTTGGTA+TGG	0.381549	3.4:-86756788	MS.gene013348:CDS
CCCACATGCTATCCTTCGTT+TGG	0.383523	3.4:-86756313	MS.gene013348:CDS
CGAGGTCGGCCAACAATACT+TGG	0.411313	3.4:+86756814	None:intergenic
TACGGCAACATTGTTCTTAG+TGG	0.417976	3.4:-86755946	MS.gene013348:CDS
ATGGTTGGAAAAGGACTTCT+GGG	0.420047	3.4:+86756055	None:intergenic
GGAAATTGTCCGTGACATAA+AGG	0.432407	3.4:-86756208	MS.gene013348:CDS
TATGCAAGTGGTCGTACAAC+TGG	0.432992	3.4:-86756481	MS.gene013348:intron
GTTGGCCGACCTCGTCATAC+TGG	0.436618	3.4:-86756805	MS.gene013348:CDS
CTTGTTTGTGACAATGGAAC+TGG	0.436831	3.4:-86756978	MS.gene013348:CDS
TCTTCATGCTGCTAGGAGCC+AGG	0.437433	3.4:+86755869	None:intergenic
CAACCCCTTGTTTGTGACAA+TGG	0.439095	3.4:-86756984	MS.gene013348:CDS
TTCTCTCAGTACTTTCCAGC+AGG	0.448158	3.4:-86755785	MS.gene013348:intron
GGAGCCTCAGTTAGAAGCAC+TGG	0.448567	3.4:+86756604	None:intergenic
TTGCTGGTGATGATGCTCCT+AGG	0.448710	3.4:-86756846	MS.gene013348:CDS
GCTGTGTTTCCAAGTATTGT+TGG	0.449099	3.4:-86756823	MS.gene013348:CDS
CGCCATGTATGTGGCCATCC+AGG	0.449438	3.4:-86756518	MS.gene013348:CDS
ACACTTCATGATAGAGTTGT+AGG	0.451087	3.4:+86755993	None:intergenic
GATGGACAAGTTATCACAAT+TGG	0.452391	3.4:-86756096	MS.gene013348:CDS
AGAAAGTACAGTGTGTGGAT+TGG	0.454365	3.4:-86755823	MS.gene013348:CDS
ATTGTGATAACTTGTCCATC+AGG	0.464957	3.4:+86756099	None:intergenic
CACACACTGTACTTTCTCTC+TGG	0.465571	3.4:+86755829	None:intergenic
CATTTCCTGTGGACAATGGA+TGG	0.469196	3.4:+86755628	None:intergenic
CGATCATTGATGGTTGGAAA+AGG	0.470418	3.4:+86756046	None:intergenic
GGGATGACATGGAGAAGATC+TGG	0.479434	3.4:-86756672	MS.gene013348:CDS
GAAGCTTGCATATGTTGCCT+TGG	0.482032	3.4:-86756184	MS.gene013348:CDS
AGCCTGGATGGCCACATACA+TGG	0.486225	3.4:+86756516	None:intergenic
TCACACTGTGCCAATCTATG+AGG	0.492803	3.4:-86756346	MS.gene013348:CDS
ACTGACAATACCGTGCTCAA+TGG	0.496612	3.4:+86756699	None:intergenic
ATGAAGATCCTCACTGAGAG+AGG	0.498979	3.4:-86756258	MS.gene013348:CDS
AAGGGTGAATATGACGAGTC+TGG	0.499493	3.4:-86755652	MS.gene013348:CDS
AAGTACAGTGTGTGGATTGG+AGG	0.499666	3.4:-86755820	MS.gene013348:CDS
CAGCATGAAGATTAAGGTTG+TGG	0.500086	3.4:-86755857	MS.gene013348:CDS
GTTCACCACCTCAGCTGAGC+GGG	0.502382	3.4:-86756229	MS.gene013348:CDS
AGTGCATAACCCTCATAGAT+TGG	0.503175	3.4:+86756336	None:intergenic
CCATTCCGATCATTGATGGT+TGG	0.507915	3.4:+86756040	None:intergenic
CTCATACGGTCAGCAATACC+AGG	0.512812	3.4:+86755907	None:intergenic
TGCTGGTGATGATGCTCCTA+GGG	0.516201	3.4:-86756845	MS.gene013348:CDS
CATAGAGGGAGAGGACAGCC+TGG	0.522013	3.4:+86756500	None:intergenic
TTGGGCTTCGTCACCAACAT+AGG	0.522846	3.4:+86756753	None:intergenic
CAGTTCCATTGTCACAAACA+AGG	0.524372	3.4:+86756979	None:intergenic
GGCAACATTGTTCTTAGTGG+TGG	0.526272	3.4:-86755943	MS.gene013348:CDS
GAGCAAGGAGATCACTGCCC+TGG	0.526620	3.4:-86755887	MS.gene013348:CDS
CAGTGATCTCCTTGCTCATA+CGG	0.530919	3.4:+86755893	None:intergenic
CCAACCATCAATGATCGGAA+TGG	0.531135	3.4:-86756040	MS.gene013348:CDS
CATGGTTGGTATGGGTCAAA+AGG	0.532081	3.4:-86756779	MS.gene013348:CDS
ATTGTGTTGGATTCCGGCGA+TGG	0.537139	3.4:-86756375	MS.gene013348:CDS
ACTGGTGTCATGGTTGGTAT+GGG	0.539815	3.4:-86756787	MS.gene013348:CDS
ACCTCGTCATACTGGTGTCA+TGG	0.540702	3.4:-86756797	MS.gene013348:CDS
GACAATTTCCCGCTCAGCTG+AGG	0.541645	3.4:+86756221	None:intergenic
ACACTGTACTTTCTCTCTGG+TGG	0.542019	3.4:+86755832	None:intergenic
ATGATCGGAATGGAAGCTGC+TGG	0.546973	3.4:-86756030	MS.gene013348:CDS
TGTACGACCACTTGCATAGA+GGG	0.561313	3.4:+86756486	None:intergenic
AGTTCCATTGTCACAAACAA+GGG	0.561709	3.4:+86756980	None:intergenic
TGTCAGTAACTGGGATGACA+TGG	0.562581	3.4:-86756683	MS.gene013348:CDS
GAGGGAGAGGACAGCCTGGA+TGG	0.565012	3.4:+86756504	None:intergenic
TTGTACGACCACTTGCATAG+AGG	0.570654	3.4:+86756485	None:intergenic
AGACTCGTCATATTCACCCT+TGG	0.570952	3.4:+86755654	None:intergenic
AATTTCCCGCTCAGCTGAGG+TGG	0.571031	3.4:+86756224	None:intergenic
AAGTTCTTGTTCATAATCCA+AGG	0.571032	3.4:+86756167	None:intergenic
ATACTTGGAAACACAGCCCT+AGG	0.573620	3.4:+86756829	None:intergenic
CGTCATACTGGTGTCATGGT+TGG	0.573856	3.4:-86756793	MS.gene013348:CDS
CTTCATGCTGCTAGGAGCCA+GGG	0.577950	3.4:+86755870	None:intergenic
GAAGCATTTCCTGTGGACAA+TGG	0.580709	3.4:+86755624	None:intergenic
CAAGCTTCTCCTTTATGTCA+CGG	0.584330	3.4:+86756199	None:intergenic
GACCACTTGCATAGAGGGAG+AGG	0.585397	3.4:+86756491	None:intergenic
CTGGCCCATCCATTGTCCAC+AGG	0.585546	3.4:-86755633	MS.gene013348:CDS
GCAAAAGATGGCAGATGCTG+AGG	0.585999	3.4:-86757012	None:intergenic
CAATGTGCCCGCCATGTATG+TGG	0.588880	3.4:-86756527	MS.gene013348:CDS
TGGATGGCCACATACATGGC+GGG	0.589918	3.4:+86756520	None:intergenic
GACGAAGCCCAATCCAAAAG+AGG	0.590961	3.4:-86756742	MS.gene013348:CDS
GATATCAGAAAAGATCTGTA+CGG	0.594697	3.4:-86755964	MS.gene013348:CDS
GTCCTCTCCCTCTATGCAAG+TGG	0.594901	3.4:-86756493	MS.gene013348:CDS
ATTTCCTGTGGACAATGGAT+GGG	0.598758	3.4:+86755629	None:intergenic
ACCTTAATCTTCATGCTGCT+AGG	0.600175	3.4:+86755862	None:intergenic
TTTGCAGATGTGGATATCCA+AGG	0.604467	3.4:-86755671	MS.gene013348:intron
CTCAAGTACCCCATTGAGCA+CGG	0.608960	3.4:-86756709	MS.gene013348:CDS
CACACTGTGCCAATCTATGA+GGG	0.612158	3.4:-86756345	MS.gene013348:CDS
TATTGCTGACCGTATGAGCA+AGG	0.626661	3.4:-86755902	MS.gene013348:CDS
CAGAGAGAAAGTACAGTGTG+TGG	0.628344	3.4:-86755828	MS.gene013348:CDS
GAGCCTCAGTTAGAAGCACT+GGG	0.630481	3.4:+86756605	None:intergenic
AGTGTGACTCACACCATCGC+CGG	0.631174	3.4:+86756362	None:intergenic
GCACGGTATTGTCAGTAACT+GGG	0.632162	3.4:-86756692	MS.gene013348:CDS
GGTCAAAAGGATGCCTATGT+TGG	0.633441	3.4:-86756766	MS.gene013348:CDS
TCCAAACGAAGGATAGCATG+TGG	0.637382	3.4:+86756312	None:intergenic
TTGTGACAATGGAACTGGAA+TGG	0.639550	3.4:-86756973	MS.gene013348:CDS
CTCTATCATGAAGTGTGATG+TGG	0.640270	3.4:-86755986	MS.gene013348:CDS
GGACTTAGAAGCATTTCCTG+TGG	0.642629	3.4:+86755617	None:intergenic
GGAAAAGGACTTCTGGGCAA+CGG	0.648496	3.4:+86756061	None:intergenic
GGAAAGTACTGAGAGAAGCA+AGG	0.656348	3.4:+86755791	None:intergenic
GTTCCATTGTCACAAACAAG+GGG	0.658903	3.4:+86756981	None:intergenic
CAATGGAACTGGAATGGTGA+AGG	0.661223	3.4:-86756967	MS.gene013348:intron
TGAAGATCCTCACTGAGAGA+GGG	0.661425	3.4:-86756257	MS.gene013348:CDS
TTATCACAATTGGAGCTGAG+AGG	0.664936	3.4:-86756086	MS.gene013348:CDS
TGAGGCTCCACTTAACCCAA+AGG	0.668440	3.4:-86756590	MS.gene013348:CDS
TGACACCAGTATGACGAGGT+CGG	0.672228	3.4:+86756800	None:intergenic
GCACCCAGTGCTTCTAACTG+AGG	0.673440	3.4:-86756608	MS.gene013348:CDS
CCAAACGAAGGATAGCATGT+GGG	0.675471	3.4:+86756313	None:intergenic
TTGCAGATGTGGATATCCAA+GGG	0.681771	3.4:-86755670	MS.gene013348:intron
CTGGATGGCCACATACATGG+CGG	0.687535	3.4:+86756519	None:intergenic
CTTCATGATAGAGTTGTAGG+TGG	0.694993	3.4:+86755996	None:intergenic
GACCAGCAAGATCCAAACGA+AGG	0.704830	3.4:+86756301	None:intergenic
ACATGTACCCTCTCTCAGTG+AGG	0.709732	3.4:+86756250	None:intergenic
TGACAATACCGTGCTCAATG+GGG	0.720666	3.4:+86756701	None:intergenic
TGTTCACCACCTCAGCTGAG+CGG	0.722178	3.4:-86756230	MS.gene013348:CDS
ACCATGACACCAGTATGACG+AGG	0.732971	3.4:+86756796	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTCAAAAATGAAAAGATTGA+GGG	+	chr3.4:86756225-86756244	None:intergenic	20.0%
!!	TTTCAAAAATGAAAAGATTG+AGG	+	chr3.4:86756226-86756245	None:intergenic	20.0%
!!!	AATCTTTTCATTTTTGAAAC+AGG	-	chr3.4:86756227-86756246	MS.gene013348:CDS	20.0%
	AAAAACTATGAACTTCCTGA+TGG	-	chr3.4:86756512-86756531	MS.gene013348:CDS	30.0%
	AAGTTCTTGTTCATAATCCA+AGG	+	chr3.4:86756462-86756481	None:intergenic	30.0%
	GAAAGTCTCAAACATGATTT+GGG	+	chr3.4:86756080-86756099	None:intergenic	30.0%
	GACATCACATACATTATACA+TGG	+	chr3.4:86756898-86756917	None:intergenic	30.0%
	GATATCAGAAAAGATCTGTA+CGG	-	chr3.4:86756662-86756681	MS.gene013348:CDS	30.0%
	TGAAAGTCTCAAACATGATT+TGG	+	chr3.4:86756081-86756100	None:intergenic	30.0%
!	AAGAATACCTCTTTTGGATT+GGG	+	chr3.4:86755894-86755913	None:intergenic	30.0%
!	TAAGAATACCTCTTTTGGAT+TGG	+	chr3.4:86755895-86755914	None:intergenic	30.0%
!!!	TTGTTTTTGTTTTGCAGATG+TGG	-	chr3.4:86756945-86756964	MS.gene013348:intron	30.0%
!!!	TTTTGAAACAGGTATTGTGT+TGG	-	chr3.4:86756238-86756257	MS.gene013348:CDS	30.0%
	AAGATTGAGGGACAGAATAA+TGG	+	chr3.4:86756213-86756232	None:intergenic	35.0%
	ACACTTCATGATAGAGTTGT+AGG	+	chr3.4:86756636-86756655	None:intergenic	35.0%
	AGTTCCATTGTCACAAACAA+GGG	+	chr3.4:86755649-86755668	None:intergenic	35.0%
	GATGGACAAGTTATCACAAT+TGG	-	chr3.4:86756530-86756549	MS.gene013348:CDS	35.0%
	GTGATAAAATAATCACCTGC+TGG	+	chr3.4:86756859-86756878	None:intergenic	35.0%
	TTCATCTACAATTTGTGTGC+AGG	-	chr3.4:86755751-86755770	MS.gene013348:intron	35.0%
!	ATTGTGATAACTTGTCCATC+AGG	+	chr3.4:86756530-86756549	None:intergenic	35.0%
!	CTTTTCCAACCATCAATGAT+CGG	-	chr3.4:86756581-86756600	MS.gene013348:CDS	35.0%
!	GAGAGTAAGAATACCTCTTT+TGG	+	chr3.4:86755900-86755919	None:intergenic	35.0%
!	TTGGGTCATCTTTTCTCTAT+TGG	+	chr3.4:86756062-86756081	None:intergenic	35.0%
!!!	ATCTTTTCTCTATTGGCCTT+TGG	+	chr3.4:86756055-86756074	None:intergenic	35.0%
!!!	TCTTTTCTCTATTGGCCTTT+GGG	+	chr3.4:86756054-86756073	None:intergenic	35.0%
	ACCTTAATCTTCATGCTGCT+AGG	+	chr3.4:86756767-86756786	None:intergenic	40.0%
	AGTGCATAACCCTCATAGAT+TGG	+	chr3.4:86756293-86756312	None:intergenic	40.0%
	ATGGTTGGAAAAGGACTTCT+GGG	+	chr3.4:86756574-86756593	None:intergenic	40.0%
	ATTTCCTGTGGACAATGGAT+GGG	+	chr3.4:86757000-86757019	None:intergenic	40.0%
	CAAGCTTCTCCTTTATGTCA+CGG	+	chr3.4:86756430-86756449	None:intergenic	40.0%
	CAGCATGAAGATTAAGGTTG+TGG	-	chr3.4:86756769-86756788	MS.gene013348:CDS	40.0%
	CAGTTCCATTGTCACAAACA+AGG	+	chr3.4:86755650-86755669	None:intergenic	40.0%
	CTCTATCATGAAGTGTGATG+TGG	-	chr3.4:86756640-86756659	MS.gene013348:CDS	40.0%
	CTTCATGATAGAGTTGTAGG+TGG	+	chr3.4:86756633-86756652	None:intergenic	40.0%
	CTTGTTTGTGACAATGGAAC+TGG	-	chr3.4:86755648-86755667	MS.gene013348:CDS	40.0%
	GGAAATTGTCCGTGACATAA+AGG	-	chr3.4:86756418-86756437	MS.gene013348:intron	40.0%
	GTTCCATTGTCACAAACAAG+GGG	+	chr3.4:86755648-86755667	None:intergenic	40.0%
	TACGGCAACATTGTTCTTAG+TGG	-	chr3.4:86756680-86756699	MS.gene013348:CDS	40.0%
	TCCTAGCAGCATGAAGATTA+AGG	-	chr3.4:86756763-86756782	MS.gene013348:CDS	40.0%
	TTATCACAATTGGAGCTGAG+AGG	-	chr3.4:86756540-86756559	MS.gene013348:CDS	40.0%
	TTGCAGATGTGGATATCCAA+GGG	-	chr3.4:86756956-86756975	MS.gene013348:intron	40.0%
	TTGTGACAATGGAACTGGAA+TGG	-	chr3.4:86755653-86755672	MS.gene013348:CDS	40.0%
	TTTGCAGATGTGGATATCCA+AGG	-	chr3.4:86756955-86756974	MS.gene013348:intron	40.0%
!	ACAGGTATTGTGTTGGATTC+CGG	-	chr3.4:86756245-86756264	MS.gene013348:CDS	40.0%
!	AGAAAGTACAGTGTGTGGAT+TGG	-	chr3.4:86756803-86756822	MS.gene013348:CDS	40.0%
!	CGATCATTGATGGTTGGAAA+AGG	+	chr3.4:86756583-86756602	None:intergenic	40.0%
!	GCTGTGTTTCCAAGTATTGT+TGG	-	chr3.4:86755803-86755822	MS.gene013348:CDS	40.0%
	AAGGGTGAATATGACGAGTC+TGG	-	chr3.4:86756974-86756993	MS.gene013348:CDS	45.0%
	ACACTGTACTTTCTCTCTGG+TGG	+	chr3.4:86756797-86756816	None:intergenic	45.0%
	ACTGACAATACCGTGCTCAA+TGG	+	chr3.4:86755930-86755949	None:intergenic	45.0%
	AGACTCGTCATATTCACCCT+TGG	+	chr3.4:86756975-86756994	None:intergenic	45.0%
	AGCACGGTATTGTCAGTAAC+TGG	-	chr3.4:86755933-86755952	MS.gene013348:CDS	45.0%
	ATACTTGGAAACACAGCCCT+AGG	+	chr3.4:86755800-86755819	None:intergenic	45.0%
	ATCCTTCGTTTGGATCTTGC+TGG	-	chr3.4:86756323-86756342	MS.gene013348:CDS	45.0%
	ATGAAGATCCTCACTGAGAG+AGG	-	chr3.4:86756368-86756387	MS.gene013348:CDS	45.0%
	CAATGGAACTGGAATGGTGA+AGG	-	chr3.4:86755659-86755678	MS.gene013348:CDS	45.0%
	CACACACTGTACTTTCTCTC+TGG	+	chr3.4:86756800-86756819	None:intergenic	45.0%
	CACACTGTGCCAATCTATGA+GGG	-	chr3.4:86756281-86756300	MS.gene013348:CDS	45.0%
	CAGTGATCTCCTTGCTCATA+CGG	+	chr3.4:86756736-86756755	None:intergenic	45.0%
	CATTTCCTGTGGACAATGGA+TGG	+	chr3.4:86757001-86757020	None:intergenic	45.0%
	CCAAACGAAGGATAGCATGT+GGG	+	chr3.4:86756316-86756335	None:intergenic	45.0%
	CCAACCATCAATGATCGGAA+TGG	-	chr3.4:86756586-86756605	MS.gene013348:CDS	45.0%
	CTGACAATACCGTGCTCAAT+GGG	+	chr3.4:86755929-86755948	None:intergenic	45.0%
	GAAGCTTGCATATGTTGCCT+TGG	-	chr3.4:86756442-86756461	MS.gene013348:intron	45.0%
	GATGGTTGGAAAAGGACTTC+TGG	+	chr3.4:86756575-86756594	None:intergenic	45.0%
	GCACGGTATTGTCAGTAACT+GGG	-	chr3.4:86755934-86755953	MS.gene013348:CDS	45.0%
	GCTTCCATTCCGATCATTGA+TGG	+	chr3.4:86756593-86756612	None:intergenic	45.0%
	GGCAACATTGTTCTTAGTGG+TGG	-	chr3.4:86756683-86756702	MS.gene013348:CDS	45.0%
	GGTCAAAAGGATGCCTATGT+TGG	-	chr3.4:86755860-86755879	MS.gene013348:CDS	45.0%
	GGTGGTTCAACTATGTTTCC+TGG	-	chr3.4:86756701-86756720	MS.gene013348:CDS	45.0%
	TATGCAAGTGGTCGTACAAC+TGG	-	chr3.4:86756145-86756164	MS.gene013348:CDS	45.0%
	TATTGCTGACCGTATGAGCA+AGG	-	chr3.4:86756724-86756743	MS.gene013348:CDS	45.0%
	TCACACTGTGCCAATCTATG+AGG	-	chr3.4:86756280-86756299	MS.gene013348:CDS	45.0%
	TCCAAACGAAGGATAGCATG+TGG	+	chr3.4:86756317-86756336	None:intergenic	45.0%
	TCTACAATTTGTGTGCAGGC+TGG	-	chr3.4:86755755-86755774	MS.gene013348:intron	45.0%
	TGAAGATCCTCACTGAGAGA+GGG	-	chr3.4:86756369-86756388	MS.gene013348:CDS	45.0%
	TGACAATACCGTGCTCAATG+GGG	+	chr3.4:86755928-86755947	None:intergenic	45.0%
	TGTACGACCACTTGCATAGA+GGG	+	chr3.4:86756143-86756162	None:intergenic	45.0%
	TGTCAGTAACTGGGATGACA+TGG	-	chr3.4:86755943-86755962	MS.gene013348:CDS	45.0%
	TTCTCTCAGTACTTTCCAGC+AGG	-	chr3.4:86756841-86756860	MS.gene013348:CDS	45.0%
	TTGTACGACCACTTGCATAG+AGG	+	chr3.4:86756144-86756163	None:intergenic	45.0%
!	CAACCCCTTGTTTGTGACAA+TGG	-	chr3.4:86755642-86755661	MS.gene013348:CDS	45.0%
!	CAGAGAGAAAGTACAGTGTG+TGG	-	chr3.4:86756798-86756817	MS.gene013348:CDS	45.0%
!	CATGGTTGGTATGGGTCAAA+AGG	-	chr3.4:86755847-86755866	MS.gene013348:CDS	45.0%
!	CCATTCCGATCATTGATGGT+TGG	+	chr3.4:86756589-86756608	None:intergenic	45.0%
!	GAAGCATTTCCTGTGGACAA+TGG	+	chr3.4:86757005-86757024	None:intergenic	45.0%
!!	AAGTACAGTGTGTGGATTGG+AGG	-	chr3.4:86756806-86756825	MS.gene013348:CDS	45.0%
!!	ACTGGTGTCATGGTTGGTAT+GGG	-	chr3.4:86755839-86755858	MS.gene013348:CDS	45.0%
!!	CTATTGGCCTTTGGGTTAAG+TGG	+	chr3.4:86756046-86756065	None:intergenic	45.0%
!!	GGAAAGTACTGAGAGAAGCA+AGG	+	chr3.4:86756838-86756857	None:intergenic	45.0%
!!	TACTGGTGTCATGGTTGGTA+TGG	-	chr3.4:86755838-86755857	MS.gene013348:CDS	45.0%
	ACATGTACCCTCTCTCAGTG+AGG	+	chr3.4:86756379-86756398	None:intergenic	50.0%
	ACCATGACACCAGTATGACG+AGG	+	chr3.4:86755833-86755852	None:intergenic	50.0%
	ATGATCGGAATGGAAGCTGC+TGG	-	chr3.4:86756596-86756615	MS.gene013348:CDS	50.0%
	ATTGTGTTGGATTCCGGCGA+TGG	-	chr3.4:86756251-86756270	MS.gene013348:CDS	50.0%
	CCCACATGCTATCCTTCGTT+TGG	-	chr3.4:86756313-86756332	MS.gene013348:CDS	50.0%
	CTCAAGTACCCCATTGAGCA+CGG	-	chr3.4:86755917-86755936	MS.gene013348:CDS	50.0%
	CTCATACGGTCAGCAATACC+AGG	+	chr3.4:86756722-86756741	None:intergenic	50.0%
	GACCAGCAAGATCCAAACGA+AGG	+	chr3.4:86756328-86756347	None:intergenic	50.0%
	GACGAAGCCCAATCCAAAAG+AGG	-	chr3.4:86755884-86755903	MS.gene013348:CDS	50.0%
	GGAAAAGGACTTCTGGGCAA+CGG	+	chr3.4:86756568-86756587	None:intergenic	50.0%
	GGGATGACATGGAGAAGATC+TGG	-	chr3.4:86755954-86755973	MS.gene013348:CDS	50.0%
	TGACACCAGTATGACGAGGT+CGG	+	chr3.4:86755829-86755848	None:intergenic	50.0%
	TGAGGCTCCACTTAACCCAA+AGG	-	chr3.4:86756036-86756055	MS.gene013348:CDS	50.0%
	TTGGGCTTCGTCACCAACAT+AGG	+	chr3.4:86755876-86755895	None:intergenic	50.0%
!	ACCTCGTCATACTGGTGTCA+TGG	-	chr3.4:86755829-86755848	MS.gene013348:CDS	50.0%
!	TGCTGGTGATGATGCTCCTA+GGG	-	chr3.4:86755781-86755800	MS.gene013348:intron	50.0%
!	TTGCTGGTGATGATGCTCCT+AGG	-	chr3.4:86755780-86755799	MS.gene013348:intron	50.0%
!!	CGTCATACTGGTGTCATGGT+TGG	-	chr3.4:86755833-86755852	MS.gene013348:CDS	50.0%
!!	GAGCCTCAGTTAGAAGCACT+GGG	+	chr3.4:86756024-86756043	None:intergenic	50.0%
	AATTTCCCGCTCAGCTGAGG+TGG	+	chr3.4:86756405-86756424	None:intergenic	55.0%
	AGCCTGGATGGCCACATACA+TGG	+	chr3.4:86756113-86756132	None:intergenic	55.0%
	AGTGTGACTCACACCATCGC+CGG	+	chr3.4:86756267-86756286	None:intergenic	55.0%
	CAATGTGCCCGCCATGTATG+TGG	-	chr3.4:86756099-86756118	MS.gene013348:CDS	55.0%
	CGAGGTCGGCCAACAATACT+TGG	+	chr3.4:86755815-86755834	None:intergenic	55.0%
	CTGGATGGCCACATACATGG+CGG	+	chr3.4:86756110-86756129	None:intergenic	55.0%
	CTTCATGCTGCTAGGAGCCA+GGG	+	chr3.4:86756759-86756778	None:intergenic	55.0%
	GACAATTTCCCGCTCAGCTG+AGG	+	chr3.4:86756408-86756427	None:intergenic	55.0%
	GACCACTTGCATAGAGGGAG+AGG	+	chr3.4:86756138-86756157	None:intergenic	55.0%
	GCACCCAGTGCTTCTAACTG+AGG	-	chr3.4:86756018-86756037	MS.gene013348:CDS	55.0%
	GTCCTCTCCCTCTATGCAAG+TGG	-	chr3.4:86756133-86756152	MS.gene013348:CDS	55.0%
	TCTTCATGCTGCTAGGAGCC+AGG	+	chr3.4:86756760-86756779	None:intergenic	55.0%
	TGGATGGCCACATACATGGC+GGG	+	chr3.4:86756109-86756128	None:intergenic	55.0%
	TGTGTGCAGGCTGGATTTGC+TGG	-	chr3.4:86755764-86755783	MS.gene013348:intron	55.0%
	TGTTCACCACCTCAGCTGAG+CGG	-	chr3.4:86756396-86756415	MS.gene013348:intron	55.0%
!	GGAGCCTCAGTTAGAAGCAC+TGG	+	chr3.4:86756025-86756044	None:intergenic	55.0%
!!	AGAAGCACTGGGTGCTCTTC+AGG	+	chr3.4:86756013-86756032	None:intergenic	55.0%
	CATAGAGGGAGAGGACAGCC+TGG	+	chr3.4:86756129-86756148	None:intergenic	60.0%
	CGCCATGTATGTGGCCATCC+AGG	-	chr3.4:86756108-86756127	MS.gene013348:CDS	60.0%
	CTGGCCCATCCATTGTCCAC+AGG	-	chr3.4:86756993-86757012	MS.gene013348:CDS	60.0%
	GAGCAAGGAGATCACTGCCC+TGG	-	chr3.4:86756739-86756758	MS.gene013348:CDS	60.0%
	GTTCACCACCTCAGCTGAGC+GGG	-	chr3.4:86756397-86756416	MS.gene013348:intron	60.0%
	GTTGGCCGACCTCGTCATAC+TGG	-	chr3.4:86755821-86755840	MS.gene013348:CDS	60.0%
	GAGGGAGAGGACAGCCTGGA+TGG	+	chr3.4:86756125-86756144	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	86755621	86757027	86755621	ID=MS.gene013348
chr3.4	mRNA	86755621	86757027	86755621	ID=MS.gene013348.t1;Parent=MS.gene013348
chr3.4	exon	86756968	86757027	86756968	ID=MS.gene013348.t1.exon1;Parent=MS.gene013348.t1
chr3.4	CDS	86756968	86757027	86756968	ID=cds.MS.gene013348.t1;Parent=MS.gene013348.t1
chr3.4	exon	86756482	86756875	86756482	ID=MS.gene013348.t1.exon2;Parent=MS.gene013348.t1
chr3.4	CDS	86756482	86756875	86756482	ID=cds.MS.gene013348.t1;Parent=MS.gene013348.t1
chr3.4	exon	86755786	86756399	86755786	ID=MS.gene013348.t1.exon3;Parent=MS.gene013348.t1
chr3.4	CDS	86755786	86756399	86755786	ID=cds.MS.gene013348.t1;Parent=MS.gene013348.t1
chr3.4	exon	86755621	86755686	86755621	ID=MS.gene013348.t1.exon4;Parent=MS.gene013348.t1
chr3.4	CDS	86755621	86755686	86755621	ID=cds.MS.gene013348.t1;Parent=MS.gene013348.t1

Gene Sequence

>MS.gene013348

ATGGCAGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGTTAGTAATTCAAAAAAAAAATCTGTCATTTTTGTGTGTTTGATTTTTGTTTTTGTTACTGAACGATGTGTTCATCTACAATTTGTGTGCAGGCTGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCAAGTATTGTTGGCCGACCTCGTCATACTGGTGTCATGGTTGGTATGGGTCAAAAGGATGCCTATGTTGGTGACGAAGCCCAATCCAAAAGAGGTATTCTTACTCTCAAGTACCCCATTGAGCACGGTATTGTCAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTAACTGAGGCTCCACTTAACCCAAAGGCCAATAGAGAAAAGATGACCCAAATCATGTTTGAGACTTTCAATGTGCCCGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTCTATGCAAGTGGTCGTACAACTGGTTCGTATTTTGACTATCTTTTTGAGAACATACTTTTGTCATTCCATTATTCTGTCCCTCAATCTTTTCATTTTTGAAACAGGTATTGTGTTGGATTCCGGCGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGTTATGCACTCCCACATGCTATCCTTCGTTTGGATCTTGCTGGTCGTGATCTAACTGATTCTTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCAGCTGAGCGGGAAATTGTCCGTGACATAAAGGAGAAGCTTGCATATGTTGCCTTGGATTATGAACAAGAACTTGAGACTGCAAAGAGCAGTTCTTCAATTGAGAAAAACTATGAACTTCCTGATGGACAAGTTATCACAATTGGAGCTGAGAGGTTCCGTTGCCCAGAAGTCCTTTTCCAACCATCAATGATCGGAATGGAAGCTGCTGGAATTCACGAGACCACCTACAACTCTATCATGAAGTGTGATGTGGATATCAGAAAAGATCTGTACGGCAACATTGTTCTTAGTGGTGGTTCAACTATGTTTCCTGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCCCTGGCTCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTACAGTGTGTGGATTGGAGGATCAATCCTTGCTTCTCTCAGTACTTTCCAGCAGGTGATTATTTTATCACAGATTAGCACATTTTGCCATGTATAATGTATGTGATGTCAATTTTATCTAATTCTACAATTTATTTTTGTTTTTGTTTTGCAGATGTGGATATCCAAGGGTGAATATGACGAGTCTGGCCCATCCATTGTCCACAGGAAATGCTTCTAA

Protein sequence

>MS.gene013348.t1

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF