Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023152.t1 | XP_003608501.1 | 100 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 1.20E-75 | 292.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023152.t1 | O22584 | 95.3 | 149 | 7 | 0 | 3 | 151 | 2 | 150 | 4.9e-73 | 275.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023152.t1 | B7FGP1 | 100.0 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 9.0e-76 | 292.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023152.t1 | MTR_4g096790 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 7.46e-108 | 303 |
MS.gene023152.t1 | MTR_2g019670 | 98.675 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 1.02e-106 | 301 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023152.t1 | AT3G11510 | 90.580 | 138 | 13 | 0 | 3 | 140 | 2 | 139 | 9.06e-91 | 260 |
MS.gene023152.t1 | AT3G52580 | 89.855 | 138 | 14 | 0 | 3 | 140 | 2 | 139 | 3.38e-90 | 259 |
MS.gene023152.t1 | AT2G36160 | 89.130 | 138 | 15 | 0 | 3 | 140 | 2 | 139 | 1.83e-89 | 257 |
MS.gene023152.t1 | ATCG00750 | 33.613 | 119 | 70 | 2 | 29 | 147 | 28 | 137 | 7.54e-12 | 59.7 |
Find 47 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGTCACTGTTTCTTCCTT+TGG | 0.286906 | 4.3:+18890825 | None:intergenic |
CACGATGAAGGTATCGTTAA+AGG | 0.289627 | 4.3:+18890746 | None:intergenic |
GGGTGCTGTCAGAAGGAATT+GGG | 0.306077 | 4.3:+18888959 | None:intergenic |
GAAACACTTGTCCGTATTAC+TGG | 0.323177 | 4.3:-18890608 | MS.gene023152:intron |
TACCCCTTCTACCACTCTTT+CGG | 0.329294 | 4.3:+18888935 | None:intergenic |
CGGGTGCTGTCAGAAGGAAT+TGG | 0.336102 | 4.3:+18888958 | None:intergenic |
CGGAGAGCAGCCTGAGCACC+AGG | 0.397348 | 4.3:+18889281 | None:intergenic |
AACACCAGGCCCTGGTGCTC+AGG | 0.414511 | 4.3:-18889291 | MS.gene023152:CDS |
CTCCGAGCCTTGGCTCGGTC+AGG | 0.414628 | 4.3:-18889263 | MS.gene023152:CDS |
CCCGCCGAAAGAGTGGTAGA+AGG | 0.418808 | 4.3:-18888939 | MS.gene023152:CDS |
CAGCATGTAACTGATTTGTC+TGG | 0.432105 | 4.3:-18890635 | MS.gene023152:CDS |
TCAGGCTGCTCTCCGAGCCT+TGG | 0.439119 | 4.3:-18889273 | MS.gene023152:CDS |
GCAGCCTGAGCACCAGGGCC+TGG | 0.441174 | 4.3:+18889287 | None:intergenic |
AAATGCAATTACCTTGCATC+TGG | 0.446928 | 4.3:+18889495 | None:intergenic |
CTATCTTTCAGGTGGAATGA+AGG | 0.447568 | 4.3:-18889581 | MS.gene023152:intron |
AGAGTGGTAGAAGGGGTAGA+AGG | 0.460011 | 4.3:-18888930 | MS.gene023152:CDS |
CCCTTCTACCACTCTTTCGG+CGG | 0.475876 | 4.3:+18888938 | None:intergenic |
ATTGTAGTCTTCGAAGAGAA+AGG | 0.478213 | 4.3:-18890856 | MS.gene023152:intron |
TGTTCACCATCTTTAACAGC+TGG | 0.478914 | 4.3:+18890798 | None:intergenic |
CTGCTCTCCGAGCCTTGGCT+CGG | 0.481498 | 4.3:-18889268 | MS.gene023152:CDS |
CACATCAAACTCCGTGCCAC+TGG | 0.484727 | 4.3:-18889329 | MS.gene023152:CDS |
TGTGTTCTGGAACAGGAGTT+GGG | 0.489912 | 4.3:-18889365 | MS.gene023152:intron |
TTTAGTCTTGTTTCCTCCAG+TGG | 0.507848 | 4.3:+18889313 | None:intergenic |
AAACACACTTACCAGTAATA+CGG | 0.508460 | 4.3:+18890597 | None:intergenic |
CCTTCTACCACTCTTTCGGC+GGG | 0.512822 | 4.3:+18888939 | None:intergenic |
GCAGCAAGCATAGCAGCATA+TGG | 0.514159 | 4.3:+18889532 | None:intergenic |
GCTCGGTCAGGAATGAAAAT+CGG | 0.525104 | 4.3:-18889251 | MS.gene023152:CDS |
TGCAATTACCTTGCATCTGG+TGG | 0.525795 | 4.3:+18889498 | None:intergenic |
CCGCCGAAAGAGTGGTAGAA+GGG | 0.532687 | 4.3:-18888938 | MS.gene023152:CDS |
AAGGAAGAAACAGTGACTCT+TGG | 0.536189 | 4.3:-18890822 | MS.gene023152:CDS |
TTTCGGCGGGTGCTGTCAGA+AGG | 0.542032 | 4.3:+18888952 | None:intergenic |
GGTAAATAGACTCACGATGA+AGG | 0.542298 | 4.3:+18890734 | None:intergenic |
TCTTGTTTCCTCCAGTGGCA+CGG | 0.542571 | 4.3:+18889318 | None:intergenic |
TTCCTGACCGAGCCAAGGCT+CGG | 0.542845 | 4.3:+18889261 | None:intergenic |
CTTGGTCCAGCTGTTAAAGA+TGG | 0.556489 | 4.3:-18890804 | MS.gene023152:CDS |
AAGACTAAAACACCAGGCCC+TGG | 0.563534 | 4.3:-18889299 | MS.gene023152:CDS |
GAGAAAGGTTAGAGAGCCAA+AGG | 0.564924 | 4.3:-18890841 | MS.gene023152:CDS |
GACAGCACCCGCCGAAAGAG+TGG | 0.584213 | 4.3:-18888946 | MS.gene023152:CDS |
TTTCATTCCTGACCGAGCCA+AGG | 0.585926 | 4.3:+18889256 | None:intergenic |
GGAATGAAAATCGGTCGCAT+AGG | 0.601542 | 4.3:-18889242 | MS.gene023152:intron |
ATCAAACTCCGTGCCACTGG+AGG | 0.606930 | 4.3:-18889326 | MS.gene023152:CDS |
AGATGTCGCCACCAGATGCA+AGG | 0.617051 | 4.3:-18889506 | MS.gene023152:intron |
AGCATGTAACTGATTTGTCT+GGG | 0.620131 | 4.3:-18890634 | MS.gene023152:CDS |
GGTGCTGTCAGAAGGAATTG+GGG | 0.625333 | 4.3:+18888960 | None:intergenic |
CGCCGAAAGAGTGGTAGAAG+GGG | 0.627165 | 4.3:-18888937 | MS.gene023152:CDS |
GGAGAGCAGCCTGAGCACCA+GGG | 0.647832 | 4.3:+18889282 | None:intergenic |
GGAAACAAGACTAAAACACC+AGG | 0.683642 | 4.3:-18889305 | MS.gene023152:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATAAGTCAATCAAAA+TGG | + | chr4.3:18889624-18889643 | None:intergenic | 15.0% |
!! | AAAAATAAGTCAATCAAAAT+GGG | + | chr4.3:18889623-18889642 | None:intergenic | 15.0% |
!! | AAAAAACACACAAAACAATT+TGG | + | chr4.3:18889217-18889236 | None:intergenic | 20.0% |
!! | AACACCAAATAAAAAACATT+TGG | - | chr4.3:18890073-18890092 | MS.gene023152:intron | 20.0% |
!! | AACCCATAATGAAAAATATT+TGG | + | chr4.3:18890217-18890236 | None:intergenic | 20.0% |
!! | AATACAAAATAAGAGTAACT+GGG | + | chr4.3:18890835-18890854 | None:intergenic | 20.0% |
!! | AATTCAATCAAATTAAAAGC+AGG | + | chr4.3:18890480-18890499 | None:intergenic | 20.0% |
!! | ACACCAAATAAAAAACATTT+GGG | - | chr4.3:18890074-18890093 | MS.gene023152:intron | 20.0% |
!! | ACCCATAATGAAAAATATTT+GGG | + | chr4.3:18890216-18890235 | None:intergenic | 20.0% |
!! | ACTTATCATGATTAGATATA+TGG | - | chr4.3:18889597-18889616 | MS.gene023152:intron | 20.0% |
!! | ATTCAATCAAATTAAAAGCA+GGG | + | chr4.3:18890479-18890498 | None:intergenic | 20.0% |
!! | CTGCAAATTTAAAAAACAAA+AGG | + | chr4.3:18890918-18890937 | None:intergenic | 20.0% |
!! | GAAAAACATTTCAATTTCAA+AGG | + | chr4.3:18888997-18889016 | None:intergenic | 20.0% |
!! | TTATTACAGATCAATGTTTA+TGG | + | chr4.3:18888941-18888960 | None:intergenic | 20.0% |
!!! | TATTCTTTTAGTCCATTTTT+AGG | - | chr4.3:18890688-18890707 | MS.gene023152:intron | 20.0% |
!!! | TTTGTTTTTTAAATTTGCAG+AGG | - | chr4.3:18890918-18890937 | MS.gene023152:intron | 20.0% |
! | AAAAATAAGCTAATCCTAAC+AGG | - | chr4.3:18889746-18889765 | MS.gene023152:intron | 25.0% |
! | AAAATTGTAAATGGCAAGAA+GGG | + | chr4.3:18890009-18890028 | None:intergenic | 25.0% |
! | ATAGCTTATATGAAAACACT+TGG | + | chr4.3:18889809-18889828 | None:intergenic | 25.0% |
! | ATTGCTCCATTTATATTATC+AGG | + | chr4.3:18890039-18890058 | None:intergenic | 25.0% |
! | ATTTCACTACAAACACTTTA+TGG | - | chr4.3:18888960-18888979 | MS.gene023152:CDS | 25.0% |
! | GAATACAAAATAAGAGTAAC+TGG | + | chr4.3:18890836-18890855 | None:intergenic | 25.0% |
! | TAGCTTATATGAAAACACTT+GGG | + | chr4.3:18889808-18889827 | None:intergenic | 25.0% |
! | TGTCTAATTTACTATCTTTC+AGG | - | chr4.3:18890315-18890334 | MS.gene023152:intron | 25.0% |
! | TTCAATCAAATTAAAAGCAG+GGG | + | chr4.3:18890478-18890497 | None:intergenic | 25.0% |
! | TTGCTCCATTTATATTATCA+GGG | + | chr4.3:18890038-18890057 | None:intergenic | 25.0% |
!! | GCCCAAATATTTTTCATTAT+GGG | - | chr4.3:18890212-18890231 | MS.gene023152:intron | 25.0% |
!! | TATGTTTGATATGTGTTTTG+TGG | - | chr4.3:18889466-18889485 | MS.gene023152:intron | 25.0% |
!! | TGCCCAAATATTTTTCATTA+TGG | - | chr4.3:18890211-18890230 | MS.gene023152:intron | 25.0% |
AAACACACTTACCAGTAATA+CGG | + | chr4.3:18889313-18889332 | None:intergenic | 30.0% | |
AAAGCCAAAAGTGAAGATTT+GGG | - | chr4.3:18889540-18889559 | MS.gene023152:CDS | 30.0% | |
AAATAGCTTATGAACCTGTT+AGG | + | chr4.3:18889763-18889782 | None:intergenic | 30.0% | |
AAATGGAGCAATTCTTCTAT+TGG | - | chr4.3:18890047-18890066 | MS.gene023152:intron | 30.0% | |
AAGCTAATTAGATACTAAGC+TGG | + | chr4.3:18890894-18890913 | None:intergenic | 30.0% | |
AAGTTGGAAATAACCAAACA+GGG | + | chr4.3:18889566-18889585 | None:intergenic | 30.0% | |
ACATTATGCAAAACAGCTTA+CGG | + | chr4.3:18889724-18889743 | None:intergenic | 30.0% | |
ATAAATGAGCGATTCTACTA+TGG | + | chr4.3:18890244-18890263 | None:intergenic | 30.0% | |
CAAAATTGTAAATGGCAAGA+AGG | + | chr4.3:18890010-18890029 | None:intergenic | 30.0% | |
CTAATTTACTATCTTTCAGG+TGG | - | chr4.3:18890318-18890337 | MS.gene023152:intron | 30.0% | |
CTCTACCCTGATAATATAAA+TGG | - | chr4.3:18890030-18890049 | MS.gene023152:intron | 30.0% | |
TGGAATGAATGATAAAACGA+AGG | + | chr4.3:18889197-18889216 | None:intergenic | 30.0% | |
! | AAAGATGGTGAACAAGTTTT+TGG | - | chr4.3:18889118-18889137 | MS.gene023152:intron | 30.0% |
! | TAAGTTGGAAATAACCAAAC+AGG | + | chr4.3:18889567-18889586 | None:intergenic | 30.0% |
!! | ATTTTCCAAAATAGCTTGTG+AGG | + | chr4.3:18889839-18889858 | None:intergenic | 30.0% |
!!! | ACACTTGTTTTAGAGAACTT+AGG | + | chr4.3:18889945-18889964 | None:intergenic | 30.0% |
!!! | GTGCCCAAATGTTTTTTATT+TGG | + | chr4.3:18890080-18890099 | None:intergenic | 30.0% |
AAATGCAATTACCTTGCATC+TGG | + | chr4.3:18890415-18890434 | None:intergenic | 35.0% | |
ACCATTTCACTATCAGATCT+TGG | + | chr4.3:18889021-18889040 | None:intergenic | 35.0% | |
ATTGTAGTCTTCGAAGAGAA+AGG | - | chr4.3:18889051-18889070 | MS.gene023152:intron | 35.0% | |
CAAAATAAGAGTAACTGGGA+AGG | + | chr4.3:18890831-18890850 | None:intergenic | 35.0% | |
CAAAGCCAAAAGTGAAGATT+TGG | - | chr4.3:18889539-18889558 | MS.gene023152:CDS | 35.0% | |
GGGTAGAGCAAAATTGTAAA+TGG | + | chr4.3:18890018-18890037 | None:intergenic | 35.0% | |
TAAGTGCACACACTATAAGT+TGG | + | chr4.3:18889582-18889601 | None:intergenic | 35.0% | |
! | AGATCTGATAGTGAAATGGT+TGG | - | chr4.3:18889021-18889040 | MS.gene023152:intron | 35.0% |
! | TCCAAGATCTGATAGTGAAA+TGG | - | chr4.3:18889017-18889036 | MS.gene023152:intron | 35.0% |
!! | AGCATGTAACTGATTTGTCT+GGG | - | chr4.3:18889273-18889292 | MS.gene023152:CDS | 35.0% |
!! | TTTGTGGAACTCTGTTTCTA+TGG | - | chr4.3:18889482-18889501 | MS.gene023152:intron | 35.0% |
AAGGAAGAAACAGTGACTCT+TGG | - | chr4.3:18889085-18889104 | MS.gene023152:intron | 40.0% | |
CACGACATGCATCCTAAAAA+TGG | + | chr4.3:18890703-18890722 | None:intergenic | 40.0% | |
GAAACACTTGTCCGTATTAC+TGG | - | chr4.3:18889299-18889318 | MS.gene023152:CDS | 40.0% | |
GGAAACAAGACTAAAACACC+AGG | - | chr4.3:18890602-18890621 | MS.gene023152:intron | 40.0% | |
GGTAAATAGACTCACGATGA+AGG | + | chr4.3:18889176-18889195 | None:intergenic | 40.0% | |
TGTTCACCATCTTTAACAGC+TGG | + | chr4.3:18889112-18889131 | None:intergenic | 40.0% | |
! | AGAGTCACTGTTTCTTCCTT+TGG | + | chr4.3:18889085-18889104 | None:intergenic | 40.0% |
! | CTATCTTTCAGGTGGAATGA+AGG | - | chr4.3:18890326-18890345 | MS.gene023152:intron | 40.0% |
!! | AATTTGCTGATCCTGTGTTC+TGG | - | chr4.3:18890529-18890548 | MS.gene023152:intron | 40.0% |
!! | CACGATGAAGGTATCGTTAA+AGG | + | chr4.3:18889164-18889183 | None:intergenic | 40.0% |
!! | CAGCATGTAACTGATTTGTC+TGG | - | chr4.3:18889272-18889291 | MS.gene023152:CDS | 40.0% |
!! | TTTAGTCTTGTTTCCTCCAG+TGG | + | chr4.3:18890597-18890616 | None:intergenic | 40.0% |
!!! | CATTTTTAGGATGCATGTCG+TGG | - | chr4.3:18890701-18890720 | MS.gene023152:intron | 40.0% |
AATGGCAAGAAGGGTCTGTT+TGG | + | chr4.3:18890000-18890019 | None:intergenic | 45.0% | |
ACATGCATCCAGCTGGTTAA+TGG | + | chr4.3:18890279-18890298 | None:intergenic | 45.0% | |
CTTGGTCCAGCTGTTAAAGA+TGG | - | chr4.3:18889103-18889122 | MS.gene023152:intron | 45.0% | |
GAGAAAGGTTAGAGAGCCAA+AGG | - | chr4.3:18889066-18889085 | MS.gene023152:intron | 45.0% | |
GCTCGGTCAGGAATGAAAAT+CGG | - | chr4.3:18890656-18890675 | MS.gene023152:intron | 45.0% | |
GGAATGAAAATCGGTCGCAT+AGG | - | chr4.3:18890665-18890684 | MS.gene023152:intron | 45.0% | |
TACCCCTTCTACCACTCTTT+CGG | + | chr4.3:18890975-18890994 | None:intergenic | 45.0% | |
TGCAATTACCTTGCATCTGG+TGG | + | chr4.3:18890412-18890431 | None:intergenic | 45.0% | |
! | AGGGCCCAAATCTTCACTTT+TGG | + | chr4.3:18889547-18889566 | None:intergenic | 45.0% |
! | CCAAAATAGCTTGTGAGGAC+AGG | + | chr4.3:18889834-18889853 | None:intergenic | 45.0% |
! | CCTGTCCTCACAAGCTATTT+TGG | - | chr4.3:18889831-18889850 | MS.gene023152:intron | 45.0% |
!! | TGTGTTCTGGAACAGGAGTT+GGG | - | chr4.3:18890542-18890561 | MS.gene023152:intron | 45.0% |
AAGACTAAAACACCAGGCCC+TGG | - | chr4.3:18890608-18890627 | MS.gene023152:intron | 50.0% | |
AGAGTGGTAGAAGGGGTAGA+AGG | - | chr4.3:18890977-18890996 | MS.gene023152:intron | 50.0% | |
ATCACCAGCTTAGAGCAGCA+GGG | + | chr4.3:18890737-18890756 | None:intergenic | 50.0% | |
CAACTCCTGTTCCAGAACAC+AGG | + | chr4.3:18890543-18890562 | None:intergenic | 50.0% | |
CTTCGTTGCCATTAACCAGC+TGG | - | chr4.3:18890268-18890287 | MS.gene023152:intron | 50.0% | |
GACTTAGACATGCATCCAGC+TGG | + | chr4.3:18890286-18890305 | None:intergenic | 50.0% | |
GCAGCAAGCATAGCAGCATA+TGG | + | chr4.3:18890378-18890397 | None:intergenic | 50.0% | |
GTGAAGATTTGGGCCCTGTT+TGG | - | chr4.3:18889550-18889569 | MS.gene023152:CDS | 50.0% | |
TTTCATTCCTGACCGAGCCA+AGG | + | chr4.3:18890654-18890673 | None:intergenic | 50.0% | |
! | GGGTGCTGTCAGAAGGAATT+GGG | + | chr4.3:18890951-18890970 | None:intergenic | 50.0% |
! | GGTGCTGTCAGAAGGAATTG+GGG | + | chr4.3:18890950-18890969 | None:intergenic | 50.0% |
! | TCTAAGCTGGTGATGTGGTC+TGG | - | chr4.3:18890743-18890762 | MS.gene023152:intron | 50.0% |
! | TCTTGTTTCCTCCAGTGGCA+CGG | + | chr4.3:18890592-18890611 | None:intergenic | 50.0% |
!! | CTGATCCTGTGTTCTGGAAC+AGG | - | chr4.3:18890535-18890554 | MS.gene023152:intron | 50.0% |
!! | CTGTGTTCTGGAACAGGAGT+TGG | - | chr4.3:18890541-18890560 | MS.gene023152:intron | 50.0% |
AGATGTCGCCACCAGATGCA+AGG | - | chr4.3:18890401-18890420 | MS.gene023152:intron | 55.0% | |
CACATCAAACTCCGTGCCAC+TGG | - | chr4.3:18890578-18890597 | MS.gene023152:intron | 55.0% | |
CATCACCAGCTTAGAGCAGC+AGG | + | chr4.3:18890738-18890757 | None:intergenic | 55.0% | |
CCCTTCTACCACTCTTTCGG+CGG | + | chr4.3:18890972-18890991 | None:intergenic | 55.0% | |
CCGCCGAAAGAGTGGTAGAA+GGG | - | chr4.3:18890969-18890988 | MS.gene023152:intron | 55.0% | |
CCTTCTACCACTCTTTCGGC+GGG | + | chr4.3:18890971-18890990 | None:intergenic | 55.0% | |
CGCCGAAAGAGTGGTAGAAG+GGG | - | chr4.3:18890970-18890989 | MS.gene023152:intron | 55.0% | |
! | ATCAAACTCCGTGCCACTGG+AGG | - | chr4.3:18890581-18890600 | MS.gene023152:intron | 55.0% |
! | CGGGTGCTGTCAGAAGGAAT+TGG | + | chr4.3:18890952-18890971 | None:intergenic | 55.0% |
! | GCTGCTCTAAGCTGGTGATG+TGG | - | chr4.3:18890738-18890757 | MS.gene023152:intron | 55.0% |
! | TGTTCCCTGCTGCTCTAAGC+TGG | - | chr4.3:18890730-18890749 | MS.gene023152:intron | 55.0% |
CCCGCCGAAAGAGTGGTAGA+AGG | - | chr4.3:18890968-18890987 | MS.gene023152:intron | 60.0% | |
TTCCTGACCGAGCCAAGGCT+CGG | + | chr4.3:18890649-18890668 | None:intergenic | 60.0% | |
! | TTTCGGCGGGTGCTGTCAGA+AGG | + | chr4.3:18890958-18890977 | None:intergenic | 60.0% |
AACACCAGGCCCTGGTGCTC+AGG | - | chr4.3:18890616-18890635 | MS.gene023152:CDS | 65.0% | |
CTGCTCTCCGAGCCTTGGCT+CGG | - | chr4.3:18890639-18890658 | MS.gene023152:intron | 65.0% | |
GACAGCACCCGCCGAAAGAG+TGG | - | chr4.3:18890961-18890980 | MS.gene023152:intron | 65.0% | |
GGAGAGCAGCCTGAGCACCA+GGG | + | chr4.3:18890628-18890647 | None:intergenic | 65.0% | |
TCAGGCTGCTCTCCGAGCCT+TGG | - | chr4.3:18890634-18890653 | MS.gene023152:CDS | 65.0% | |
CGGAGAGCAGCCTGAGCACC+AGG | + | chr4.3:18890629-18890648 | None:intergenic | 70.0% | |
!! | CTCCGAGCCTTGGCTCGGTC+AGG | - | chr4.3:18890644-18890663 | MS.gene023152:intron | 70.0% |
GCAGCCTGAGCACCAGGGCC+TGG | + | chr4.3:18890623-18890642 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 18888924 | 18891005 | 18888924 | ID=MS.gene023152 |
chr4.3 | mRNA | 18888924 | 18891005 | 18888924 | ID=MS.gene023152.t1;Parent=MS.gene023152 |
chr4.3 | exon | 18891003 | 18891005 | 18891003 | ID=MS.gene023152.t1.exon1;Parent=MS.gene023152.t1 |
chr4.3 | CDS | 18891003 | 18891005 | 18891003 | ID=cds.MS.gene023152.t1;Parent=MS.gene023152.t1 |
chr4.3 | exon | 18890749 | 18890871 | 18890749 | ID=MS.gene023152.t1.exon2;Parent=MS.gene023152.t1 |
chr4.3 | CDS | 18890749 | 18890871 | 18890749 | ID=cds.MS.gene023152.t1;Parent=MS.gene023152.t1 |
chr4.3 | exon | 18890609 | 18890654 | 18890609 | ID=MS.gene023152.t1.exon3;Parent=MS.gene023152.t1 |
chr4.3 | CDS | 18890609 | 18890654 | 18890609 | ID=cds.MS.gene023152.t1;Parent=MS.gene023152.t1 |
chr4.3 | exon | 18889507 | 18889592 | 18889507 | ID=MS.gene023152.t1.exon4;Parent=MS.gene023152.t1 |
chr4.3 | CDS | 18889507 | 18889592 | 18889507 | ID=cds.MS.gene023152.t1;Parent=MS.gene023152.t1 |
chr4.3 | exon | 18889243 | 18889372 | 18889243 | ID=MS.gene023152.t1.exon5;Parent=MS.gene023152.t1 |
chr4.3 | CDS | 18889243 | 18889372 | 18889243 | ID=cds.MS.gene023152.t1;Parent=MS.gene023152.t1 |
chr4.3 | exon | 18888924 | 18888991 | 18888924 | ID=MS.gene023152.t1.exon6;Parent=MS.gene023152.t1 |
chr4.3 | CDS | 18888924 | 18888991 | 18888924 | ID=cds.MS.gene023152.t1;Parent=MS.gene023152.t1 |
Gene Sequence |
Protein sequence |