Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028302.t1 | XP_003608501.1 | 100 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 1.20E-75 | 292.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028302.t1 | O22584 | 95.3 | 149 | 7 | 0 | 3 | 151 | 2 | 150 | 4.9e-73 | 275.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028302.t1 | B7FGP1 | 100.0 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 9.0e-76 | 292.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028302.t1 | MTR_4g096790 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 7.46e-108 | 303 |
MS.gene028302.t1 | MTR_2g019670 | 98.675 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 1.02e-106 | 301 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028302.t1 | AT3G11510 | 90.580 | 138 | 13 | 0 | 3 | 140 | 2 | 139 | 9.06e-91 | 260 |
MS.gene028302.t1 | AT3G52580 | 89.855 | 138 | 14 | 0 | 3 | 140 | 2 | 139 | 3.38e-90 | 259 |
MS.gene028302.t1 | AT2G36160 | 89.130 | 138 | 15 | 0 | 3 | 140 | 2 | 139 | 1.83e-89 | 257 |
MS.gene028302.t1 | ATCG00750 | 33.613 | 119 | 70 | 2 | 29 | 147 | 28 | 137 | 7.54e-12 | 59.7 |
Find 49 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGCATGTAACTGATTTATC+TGG | 0.235737 | 4.2:-17462666 | MS.gene028302:CDS |
AGAGTCACTGTTTCTTCCTT+TGG | 0.286906 | 4.2:+17462856 | None:intergenic |
CACGATGAAGGTATCGTTAA+AGG | 0.289627 | 4.2:+17462777 | None:intergenic |
GGGTGCTGTCAGAAGGAATT+GGG | 0.306077 | 4.2:+17461000 | None:intergenic |
GAGACACTTGTCCGTATTAC+TGG | 0.335548 | 4.2:-17462639 | MS.gene028302:intron |
CGGGTGCTGTCAGAAGGAAT+TGG | 0.341952 | 4.2:+17460999 | None:intergenic |
CGGAGAGCAGCCTGAGCACC+AGG | 0.369620 | 4.2:+17461322 | None:intergenic |
CTCCGTGCCTTGGCTCGGTC+AGG | 0.393863 | 4.2:-17461304 | MS.gene028302:CDS |
CCCGCCGGAAGAGTGGTAGA+AGG | 0.403003 | 4.2:-17460980 | MS.gene028302:CDS |
GCAATTAATTACCTTGCATC+TGG | 0.403445 | 4.2:+17461540 | None:intergenic |
AACACCAGGCCCTGGTGCTC+AGG | 0.414511 | 4.2:-17461332 | MS.gene028302:CDS |
CTGCTCTCCGTGCCTTGGCT+CGG | 0.417239 | 4.2:-17461309 | MS.gene028302:CDS |
TACCCCTTCTACCACTCTTC+CGG | 0.418937 | 4.2:+17460976 | None:intergenic |
CACATCAAACTCCGTGCTAC+TGG | 0.433708 | 4.2:-17461370 | MS.gene028302:CDS |
TCAGGCTGCTCTCCGTGCCT+TGG | 0.439119 | 4.2:-17461314 | MS.gene028302:CDS |
GCAGCCTGAGCACCAGGGCC+TGG | 0.441174 | 4.2:+17461328 | None:intergenic |
CTATCTTTCAGGTGGAATGA+AGG | 0.447568 | 4.2:-17461626 | MS.gene028302:intron |
AGAGTGGTAGAAGGGGTAGA+AGG | 0.476500 | 4.2:-17460971 | MS.gene028302:CDS |
TGTTCACCATCTTTAACAGC+TGG | 0.478914 | 4.2:+17462829 | None:intergenic |
TGTGTTCTGGAACAGGAGTT+GGG | 0.489912 | 4.2:-17461406 | MS.gene028302:intron |
AAACACACTTACCAGTAATA+CGG | 0.508460 | 4.2:+17462628 | None:intergenic |
GCAGCAAGCATAGCAGCATA+TGG | 0.514159 | 4.2:+17461577 | None:intergenic |
GCTCGGTCAGGAATGAAAAT+CGG | 0.525104 | 4.2:-17461292 | MS.gene028302:CDS |
CCGCCGGAAGAGTGGTAGAA+GGG | 0.526261 | 4.2:-17460979 | MS.gene028302:CDS |
CCCTTCTACCACTCTTCCGG+CGG | 0.527005 | 4.2:+17460979 | None:intergenic |
TTCCGGCGGGTGCTGTCAGA+AGG | 0.527543 | 4.2:+17460993 | None:intergenic |
ATTAATTACCTTGCATCTGG+TGG | 0.534259 | 4.2:+17461543 | None:intergenic |
AGCATGTAACTGATTTATCT+GGG | 0.535775 | 4.2:-17462665 | MS.gene028302:CDS |
AAGGAAGAAACAGTGACTCT+TGG | 0.536189 | 4.2:-17462853 | MS.gene028302:CDS |
GGTAAATAGACTCACGATGA+AGG | 0.542298 | 4.2:+17462765 | None:intergenic |
ATTGTAGTCGTCGAAGAGAA+AGG | 0.542368 | 4.2:-17462887 | MS.gene028302:intron |
TAGCACGGAGTTTGATGTGA+AGG | 0.550450 | 4.2:+17461374 | None:intergenic |
CTTGGTCCAGCTGTTAAAGA+TGG | 0.556489 | 4.2:-17462835 | MS.gene028302:CDS |
CCTTCTACCACTCTTCCGGC+GGG | 0.560950 | 4.2:+17460980 | None:intergenic |
TCTTGTTTCCTCCAGTAGCA+CGG | 0.560976 | 4.2:+17461359 | None:intergenic |
AAGACTAAAACACCAGGCCC+TGG | 0.563534 | 4.2:-17461340 | MS.gene028302:CDS |
GAGAAAGGTTAGAGAGCCAA+AGG | 0.564924 | 4.2:-17462872 | MS.gene028302:CDS |
GACAGCACCCGCCGGAAGAG+TGG | 0.573460 | 4.2:-17460987 | MS.gene028302:CDS |
TTTCATTCCTGACCGAGCCA+AGG | 0.588154 | 4.2:+17461297 | None:intergenic |
TTCCTGACCGAGCCAAGGCA+CGG | 0.590022 | 4.2:+17461302 | None:intergenic |
TTCCTTCTGACAGCACCCGC+CGG | 0.596996 | 4.2:-17460995 | MS.gene028302:CDS |
GGAATGAAAATCGGTCGCAT+AGG | 0.601542 | 4.2:-17461283 | MS.gene028302:intron |
AGCACGGAGTTTGATGTGAA+GGG | 0.613466 | 4.2:+17461375 | None:intergenic |
AGATGTCGCCACCAGATGCA+AGG | 0.617051 | 4.2:-17461551 | MS.gene028302:intron |
GGTGCTGTCAGAAGGAATTG+GGG | 0.625333 | 4.2:+17461001 | None:intergenic |
CGCCGGAAGAGTGGTAGAAG+GGG | 0.627165 | 4.2:-17460978 | MS.gene028302:CDS |
ATCAAACTCCGTGCTACTGG+AGG | 0.632452 | 4.2:-17461367 | MS.gene028302:CDS |
GGAGAGCAGCCTGAGCACCA+GGG | 0.667118 | 4.2:+17461323 | None:intergenic |
GGAAACAAGACTAAAACACC+AGG | 0.683642 | 4.2:-17461346 | MS.gene028302:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATAAGTCAATCAAAA+TGG | + | chr4.2:17461702-17461721 | None:intergenic | 15.0% |
!! | AAAAATAAGTCAATCAAAAT+GGG | + | chr4.2:17461701-17461720 | None:intergenic | 15.0% |
!!! | AAAAAACACACAATTTTTTT+TGG | + | chr4.2:17461304-17461323 | None:intergenic | 15.0% |
!! | AACACCAAATAAAAAACATT+TGG | - | chr4.2:17462147-17462166 | MS.gene028302:intron | 20.0% |
!! | AACCCATAATGAAAAATATT+TGG | + | chr4.2:17462290-17462309 | None:intergenic | 20.0% |
!! | AATACAAAATAAGAGTAACT+GGG | + | chr4.2:17462912-17462931 | None:intergenic | 20.0% |
!! | AATTCAATCAAATTAAAAGC+AGG | + | chr4.2:17462557-17462576 | None:intergenic | 20.0% |
!! | ACACCAAATAAAAAACATTT+GGG | - | chr4.2:17462148-17462167 | MS.gene028302:intron | 20.0% |
!! | ACCCATAATGAAAAATATTT+GGG | + | chr4.2:17462289-17462308 | None:intergenic | 20.0% |
!! | ATTCAATCAAATTAAAAGCA+GGG | + | chr4.2:17462556-17462575 | None:intergenic | 20.0% |
!! | ATTGTTATAGAAATAGCTTA+TGG | + | chr4.2:17461846-17461865 | None:intergenic | 20.0% |
!! | CAATTCAATTTCAATTTCAA+AGG | + | chr4.2:17461074-17461093 | None:intergenic | 20.0% |
!! | CTGCAAATTTAAAAAACAAA+AGG | + | chr4.2:17462995-17463014 | None:intergenic | 20.0% |
!! | TATCTAATTTACTATCTTTC+AGG | - | chr4.2:17462388-17462407 | MS.gene028302:intron | 20.0% |
!!! | ATTTTCATATGTTTATGTCA+TGG | + | chr4.2:17461959-17461978 | None:intergenic | 20.0% |
!!! | TATTCTTTTAGTCCATTTTT+AGG | - | chr4.2:17462765-17462784 | MS.gene028302:intron | 20.0% |
!!! | TTTGTTTTTTAAATTTGCAG+AGG | - | chr4.2:17462995-17463014 | MS.gene028302:intron | 20.0% |
!!! | TTTTCATATGTTTATGTCAT+GGG | + | chr4.2:17461958-17461977 | None:intergenic | 20.0% |
! | AAAATTGTAAATGGCAAGAA+GGG | + | chr4.2:17462083-17462102 | None:intergenic | 25.0% |
! | ACTTACCATGATTAGATATA+AGG | - | chr4.2:17461675-17461694 | MS.gene028302:intron | 25.0% |
! | ATAGCTTATATGAAAACACT+TGG | + | chr4.2:17461882-17461901 | None:intergenic | 25.0% |
! | ATTACACAGATCAATGTTTA+TGG | + | chr4.2:17460982-17461001 | None:intergenic | 25.0% |
! | ATTGCTCCATTTATATTATC+AGG | + | chr4.2:17462113-17462132 | None:intergenic | 25.0% |
! | ATTTCACTACAAACACTTTA+TGG | - | chr4.2:17461003-17461022 | MS.gene028302:CDS | 25.0% |
! | GAATACAAAATAAGAGTAAC+TGG | + | chr4.2:17462913-17462932 | None:intergenic | 25.0% |
! | TAGCTTATATGAAAACACTT+GGG | + | chr4.2:17461881-17461900 | None:intergenic | 25.0% |
! | TGGAATGAATGATAAAAAGA+AGG | + | chr4.2:17461284-17461303 | None:intergenic | 25.0% |
! | TTCAATCAAATTAAAAGCAG+GGG | + | chr4.2:17462555-17462574 | None:intergenic | 25.0% |
! | TTGCTCCATTTATATTATCA+GGG | + | chr4.2:17462112-17462131 | None:intergenic | 25.0% |
!! | GCCCAAATATTTTTCATTAT+GGG | - | chr4.2:17462285-17462304 | MS.gene028302:intron | 25.0% |
!! | TATGTTTGATATGTGTTTTG+TGG | - | chr4.2:17461544-17461563 | MS.gene028302:intron | 25.0% |
!! | TGCCCAAATATTTTTCATTA+TGG | - | chr4.2:17462284-17462303 | MS.gene028302:intron | 25.0% |
AAACACACTTACCAGTAATA+CGG | + | chr4.2:17461400-17461419 | None:intergenic | 30.0% | |
AAATAGCTTATGGACATGTT+AGG | + | chr4.2:17461836-17461855 | None:intergenic | 30.0% | |
AAATGGAGCAATTCTTCTAT+TGG | - | chr4.2:17462121-17462140 | MS.gene028302:intron | 30.0% | |
AAGCTAATTAGATACTAAGC+TGG | + | chr4.2:17462971-17462990 | None:intergenic | 30.0% | |
AAGTTGGAAATAACCAAACA+GGG | + | chr4.2:17461644-17461663 | None:intergenic | 30.0% | |
ACATTATGCAAAACAGCTTA+TGG | + | chr4.2:17461797-17461816 | None:intergenic | 30.0% | |
ATAAATGAGCGATTCTACTA+TGG | + | chr4.2:17462317-17462336 | None:intergenic | 30.0% | |
CAAAATTGTAAATGGCAAGA+AGG | + | chr4.2:17462084-17462103 | None:intergenic | 30.0% | |
CTAATTTACTATCTTTCAGG+TGG | - | chr4.2:17462391-17462410 | MS.gene028302:intron | 30.0% | |
CTCTACCCTGATAATATAAA+TGG | - | chr4.2:17462104-17462123 | MS.gene028302:intron | 30.0% | |
! | AAAGATGGTGAACAAGTTTT+TGG | - | chr4.2:17461205-17461224 | MS.gene028302:intron | 30.0% |
! | AGCATGTAACTGATTTATCT+GGG | - | chr4.2:17461360-17461379 | MS.gene028302:CDS | 30.0% |
! | TAAGTTGGAAATAACCAAAC+AGG | + | chr4.2:17461645-17461664 | None:intergenic | 30.0% |
!! | ATTTTCCAAAATAGCTTGTG+AGG | + | chr4.2:17461912-17461931 | None:intergenic | 30.0% |
!! | TTTGTGGAATTCTGTTTCTA+TGG | - | chr4.2:17461560-17461579 | MS.gene028302:CDS | 30.0% |
!!! | ACACTTGTTTTAGAGAACTT+AGG | + | chr4.2:17462019-17462038 | None:intergenic | 30.0% |
!!! | GTGCCCAAATGTTTTTTATT+TGG | + | chr4.2:17462154-17462173 | None:intergenic | 30.0% |
!!! | TGTTTTTCTCTAAGATCTGA+TGG | - | chr4.2:17461092-17461111 | MS.gene028302:intron | 30.0% |
ATTAATTACCTTGCATCTGG+TGG | + | chr4.2:17462485-17462504 | None:intergenic | 35.0% | |
CAAAATAAGAGTAACTGGGA+AGG | + | chr4.2:17462908-17462927 | None:intergenic | 35.0% | |
CAAGACATGCATCCTAAAAA+TGG | + | chr4.2:17462780-17462799 | None:intergenic | 35.0% | |
GCAATTAATTACCTTGCATC+TGG | + | chr4.2:17462488-17462507 | None:intergenic | 35.0% | |
GGGTAGAGCAAAATTGTAAA+TGG | + | chr4.2:17462092-17462111 | None:intergenic | 35.0% | |
TAAGTGCACACACTATAAGT+TGG | + | chr4.2:17461660-17461679 | None:intergenic | 35.0% | |
! | AGATCTGATGGTTTGTGAAA+TGG | - | chr4.2:17461104-17461123 | MS.gene028302:intron | 35.0% |
! | ATGGGCCTTATATCTAATCA+TGG | + | chr4.2:17461683-17461702 | None:intergenic | 35.0% |
! | CAGCATGTAACTGATTTATC+TGG | - | chr4.2:17461359-17461378 | MS.gene028302:CDS | 35.0% |
!!! | CATTTTTAGGATGCATGTCT+TGG | - | chr4.2:17462778-17462797 | MS.gene028302:intron | 35.0% |
!!! | CTGGTAAGTGTGTTTTGTTT+AGG | - | chr4.2:17461405-17461424 | MS.gene028302:intron | 35.0% |
AAGGAAGAAACAGTGACTCT+TGG | - | chr4.2:17461172-17461191 | MS.gene028302:intron | 40.0% | |
ATTGTAGTCGTCGAAGAGAA+AGG | - | chr4.2:17461138-17461157 | MS.gene028302:intron | 40.0% | |
GGAAACAAGACTAAAACACC+AGG | - | chr4.2:17462679-17462698 | MS.gene028302:intron | 40.0% | |
GGTAAATAGACTCACGATGA+AGG | + | chr4.2:17461263-17461282 | None:intergenic | 40.0% | |
TGTTCACCATCTTTAACAGC+TGG | + | chr4.2:17461199-17461218 | None:intergenic | 40.0% | |
! | AGAGTCACTGTTTCTTCCTT+TGG | + | chr4.2:17461172-17461191 | None:intergenic | 40.0% |
! | CTATCTTTCAGGTGGAATGA+AGG | - | chr4.2:17462399-17462418 | MS.gene028302:intron | 40.0% |
! | CTGATGGTTTGTGAAATGGT+TGG | - | chr4.2:17461108-17461127 | MS.gene028302:intron | 40.0% |
!! | AATTTGCTGATCCTGTGTTC+TGG | - | chr4.2:17462606-17462625 | MS.gene028302:intron | 40.0% |
!! | CACGATGAAGGTATCGTTAA+AGG | + | chr4.2:17461251-17461270 | None:intergenic | 40.0% |
AATGGCAAGAAGGGTCTGTT+TGG | + | chr4.2:17462074-17462093 | None:intergenic | 45.0% | |
AGCACGGAGTTTGATGTGAA+GGG | + | chr4.2:17462653-17462672 | None:intergenic | 45.0% | |
CTTGGTCCAGCTGTTAAAGA+TGG | - | chr4.2:17461190-17461209 | MS.gene028302:intron | 45.0% | |
GAGAAAGGTTAGAGAGCCAA+AGG | - | chr4.2:17461153-17461172 | MS.gene028302:intron | 45.0% | |
GAGACACTTGTCCGTATTAC+TGG | - | chr4.2:17461386-17461405 | MS.gene028302:CDS | 45.0% | |
GCTCGGTCAGGAATGAAAAT+CGG | - | chr4.2:17462733-17462752 | MS.gene028302:intron | 45.0% | |
GGAATGAAAATCGGTCGCAT+AGG | - | chr4.2:17462742-17462761 | MS.gene028302:intron | 45.0% | |
TAGCACGGAGTTTGATGTGA+AGG | + | chr4.2:17462654-17462673 | None:intergenic | 45.0% | |
! | AGGGCACGAATCTTCACTTT+TGG | + | chr4.2:17461625-17461644 | None:intergenic | 45.0% |
! | CCAAAATAGCTTGTGAGGAC+AGG | + | chr4.2:17461907-17461926 | None:intergenic | 45.0% |
! | CCTGTCCTCACAAGCTATTT+TGG | - | chr4.2:17461904-17461923 | MS.gene028302:intron | 45.0% |
! | TCTTGTTTCCTCCAGTAGCA+CGG | + | chr4.2:17462669-17462688 | None:intergenic | 45.0% |
!! | TGTGTTCTGGAACAGGAGTT+GGG | - | chr4.2:17462619-17462638 | MS.gene028302:intron | 45.0% |
AAGACTAAAACACCAGGCCC+TGG | - | chr4.2:17462685-17462704 | MS.gene028302:intron | 50.0% | |
ACATGCGTCCAGCTGGTTAA+TGG | + | chr4.2:17462352-17462371 | None:intergenic | 50.0% | |
AGAGTGGTAGAAGGGGTAGA+AGG | - | chr4.2:17463054-17463073 | MS.gene028302:intron | 50.0% | |
ATCACCAGCTTAGAGCAGCA+GGG | + | chr4.2:17462814-17462833 | None:intergenic | 50.0% | |
CAACTCCTGTTCCAGAACAC+AGG | + | chr4.2:17462620-17462639 | None:intergenic | 50.0% | |
CACATCAAACTCCGTGCTAC+TGG | - | chr4.2:17462655-17462674 | MS.gene028302:CDS | 50.0% | |
CTTCGTTGCCATTAACCAGC+TGG | - | chr4.2:17462341-17462360 | MS.gene028302:intron | 50.0% | |
GCAGCAAGCATAGCAGCATA+TGG | + | chr4.2:17462451-17462470 | None:intergenic | 50.0% | |
GTGAAGATTCGTGCCCTGTT+TGG | - | chr4.2:17461628-17461647 | MS.gene028302:intron | 50.0% | |
TACCCCTTCTACCACTCTTC+CGG | + | chr4.2:17463052-17463071 | None:intergenic | 50.0% | |
TTTCATTCCTGACCGAGCCA+AGG | + | chr4.2:17462731-17462750 | None:intergenic | 50.0% | |
! | ATCAAACTCCGTGCTACTGG+AGG | - | chr4.2:17462658-17462677 | MS.gene028302:CDS | 50.0% |
! | GGGTGCTGTCAGAAGGAATT+GGG | + | chr4.2:17463028-17463047 | None:intergenic | 50.0% |
! | GGTGCTGTCAGAAGGAATTG+GGG | + | chr4.2:17463027-17463046 | None:intergenic | 50.0% |
! | TCTAAGCTGGTGATGTGGTC+TGG | - | chr4.2:17462820-17462839 | MS.gene028302:CDS | 50.0% |
!! | CTGATCCTGTGTTCTGGAAC+AGG | - | chr4.2:17462612-17462631 | MS.gene028302:intron | 50.0% |
!! | CTGTGTTCTGGAACAGGAGT+TGG | - | chr4.2:17462618-17462637 | MS.gene028302:intron | 50.0% |
AGATGTCGCCACCAGATGCA+AGG | - | chr4.2:17462474-17462493 | MS.gene028302:intron | 55.0% | |
CATCACCAGCTTAGAGCAGC+AGG | + | chr4.2:17462815-17462834 | None:intergenic | 55.0% | |
GACTTAGACATGCGTCCAGC+TGG | + | chr4.2:17462359-17462378 | None:intergenic | 55.0% | |
! | CGGGTGCTGTCAGAAGGAAT+TGG | + | chr4.2:17463029-17463048 | None:intergenic | 55.0% |
! | GCTGCTCTAAGCTGGTGATG+TGG | - | chr4.2:17462815-17462834 | MS.gene028302:CDS | 55.0% |
! | TGTTCCCTGCTGCTCTAAGC+TGG | - | chr4.2:17462807-17462826 | MS.gene028302:CDS | 55.0% |
CCCTTCTACCACTCTTCCGG+CGG | + | chr4.2:17463049-17463068 | None:intergenic | 60.0% | |
CCGCCGGAAGAGTGGTAGAA+GGG | - | chr4.2:17463046-17463065 | MS.gene028302:intron | 60.0% | |
CCTTCTACCACTCTTCCGGC+GGG | + | chr4.2:17463048-17463067 | None:intergenic | 60.0% | |
CGCCGGAAGAGTGGTAGAAG+GGG | - | chr4.2:17463047-17463066 | MS.gene028302:intron | 60.0% | |
TTCCTGACCGAGCCAAGGCA+CGG | + | chr4.2:17462726-17462745 | None:intergenic | 60.0% | |
TTCCTTCTGACAGCACCCGC+CGG | - | chr4.2:17463030-17463049 | MS.gene028302:intron | 60.0% | |
AACACCAGGCCCTGGTGCTC+AGG | - | chr4.2:17462693-17462712 | MS.gene028302:intron | 65.0% | |
CCCGCCGGAAGAGTGGTAGA+AGG | - | chr4.2:17463045-17463064 | MS.gene028302:intron | 65.0% | |
CTGCTCTCCGTGCCTTGGCT+CGG | - | chr4.2:17462716-17462735 | MS.gene028302:intron | 65.0% | |
GGAGAGCAGCCTGAGCACCA+GGG | + | chr4.2:17462705-17462724 | None:intergenic | 65.0% | |
TCAGGCTGCTCTCCGTGCCT+TGG | - | chr4.2:17462711-17462730 | MS.gene028302:intron | 65.0% | |
! | TTCCGGCGGGTGCTGTCAGA+AGG | + | chr4.2:17463035-17463054 | None:intergenic | 65.0% |
CGGAGAGCAGCCTGAGCACC+AGG | + | chr4.2:17462706-17462725 | None:intergenic | 70.0% | |
GACAGCACCCGCCGGAAGAG+TGG | - | chr4.2:17463038-17463057 | MS.gene028302:intron | 70.0% | |
!! | CTCCGTGCCTTGGCTCGGTC+AGG | - | chr4.2:17462721-17462740 | MS.gene028302:intron | 70.0% |
GCAGCCTGAGCACCAGGGCC+TGG | + | chr4.2:17462700-17462719 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 17460965 | 17463082 | 17460965 | ID=MS.gene028302 |
chr4.2 | mRNA | 17460965 | 17463082 | 17460965 | ID=MS.gene028302.t1;Parent=MS.gene028302 |
chr4.2 | exon | 17463080 | 17463082 | 17463080 | ID=MS.gene028302.t1.exon1;Parent=MS.gene028302.t1 |
chr4.2 | CDS | 17463080 | 17463082 | 17463080 | ID=cds.MS.gene028302.t1;Parent=MS.gene028302.t1 |
chr4.2 | exon | 17462780 | 17462902 | 17462780 | ID=MS.gene028302.t1.exon2;Parent=MS.gene028302.t1 |
chr4.2 | CDS | 17462780 | 17462902 | 17462780 | ID=cds.MS.gene028302.t1;Parent=MS.gene028302.t1 |
chr4.2 | exon | 17462640 | 17462685 | 17462640 | ID=MS.gene028302.t1.exon3;Parent=MS.gene028302.t1 |
chr4.2 | CDS | 17462640 | 17462685 | 17462640 | ID=cds.MS.gene028302.t1;Parent=MS.gene028302.t1 |
chr4.2 | exon | 17461552 | 17461637 | 17461552 | ID=MS.gene028302.t1.exon4;Parent=MS.gene028302.t1 |
chr4.2 | CDS | 17461552 | 17461637 | 17461552 | ID=cds.MS.gene028302.t1;Parent=MS.gene028302.t1 |
chr4.2 | exon | 17461284 | 17461413 | 17461284 | ID=MS.gene028302.t1.exon5;Parent=MS.gene028302.t1 |
chr4.2 | CDS | 17461284 | 17461413 | 17461284 | ID=cds.MS.gene028302.t1;Parent=MS.gene028302.t1 |
chr4.2 | exon | 17460965 | 17461032 | 17460965 | ID=MS.gene028302.t1.exon6;Parent=MS.gene028302.t1 |
chr4.2 | CDS | 17460965 | 17461032 | 17460965 | ID=cds.MS.gene028302.t1;Parent=MS.gene028302.t1 |
Gene Sequence |
Protein sequence |