Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35155.t1 | XP_003608501.1 | 100 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 1.20E-75 | 292.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35155.t1 | O22584 | 95.3 | 149 | 7 | 0 | 3 | 151 | 2 | 150 | 4.9e-73 | 275.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35155.t1 | B7FGP1 | 100.0 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 9.0e-76 | 292.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35155.t1 | MTR_4g096790 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 7.46e-108 | 303 |
MS.gene35155.t1 | MTR_2g019670 | 98.675 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 1.02e-106 | 301 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35155.t1 | AT3G11510 | 90.580 | 138 | 13 | 0 | 3 | 140 | 2 | 139 | 9.06e-91 | 260 |
MS.gene35155.t1 | AT3G52580 | 89.855 | 138 | 14 | 0 | 3 | 140 | 2 | 139 | 3.38e-90 | 259 |
MS.gene35155.t1 | AT2G36160 | 89.130 | 138 | 15 | 0 | 3 | 140 | 2 | 139 | 1.83e-89 | 257 |
MS.gene35155.t1 | ATCG00750 | 33.613 | 119 | 70 | 2 | 29 | 147 | 28 | 137 | 7.54e-12 | 59.7 |
Find 45 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGCATGTAACTGATTTATC+TGG | 0.235737 | 4.4:-19326356 | MS.gene35155:CDS |
AGAGTCACTGTTTCTTCCTT+TGG | 0.286906 | 4.4:+19326546 | None:intergenic |
CACGATGAAGGTATCGTTAA+AGG | 0.289627 | 4.4:+19326467 | None:intergenic |
GGGTGCTGTCAGAAGGAATT+GGG | 0.306077 | 4.4:+19324689 | None:intergenic |
TACCCCTTCTACCACTCTTT+CGG | 0.329294 | 4.4:+19324665 | None:intergenic |
GAGACACTTGTCCGTATTAC+TGG | 0.335548 | 4.4:-19326329 | MS.gene35155:intron |
CGGGTGCTGTCAGAAGGAAT+TGG | 0.336102 | 4.4:+19324688 | None:intergenic |
CGGAGAGCAGCCTGAGCACC+AGG | 0.389887 | 4.4:+19325011 | None:intergenic |
AACACCAGGCCCTGGTGCTC+AGG | 0.414511 | 4.4:-19325021 | MS.gene35155:CDS |
CTCCGTGCATTGGCTCGGTC+AGG | 0.418440 | 4.4:-19324993 | MS.gene35155:CDS |
CCCGCCGAAAGAGTGGTAGA+AGG | 0.418808 | 4.4:-19324669 | MS.gene35155:CDS |
CACATCAAACTCCGTGCTAC+TGG | 0.433708 | 4.4:-19325059 | MS.gene35155:CDS |
GCAGCCTGAGCACCAGGGCC+TGG | 0.441174 | 4.4:+19325017 | None:intergenic |
AAATGCAATTACCTTGCATC+TGG | 0.446928 | 4.4:+19325225 | None:intergenic |
CTATCTTTCAGGTGGAATGA+AGG | 0.447568 | 4.4:-19325311 | MS.gene35155:intron |
TCAGGCTGCTCTCCGTGCAT+TGG | 0.455384 | 4.4:-19325003 | MS.gene35155:CDS |
AGAGTGGTAGAAGGGGTAGA+AGG | 0.460011 | 4.4:-19324660 | MS.gene35155:CDS |
CTGCTCTCCGTGCATTGGCT+CGG | 0.461034 | 4.4:-19324998 | MS.gene35155:CDS |
CCCTTCTACCACTCTTTCGG+CGG | 0.475876 | 4.4:+19324668 | None:intergenic |
TGTTCACCATCTTTAACAGC+TGG | 0.478914 | 4.4:+19326519 | None:intergenic |
TGTGTTCTGGAACAGGAGTT+GGG | 0.489912 | 4.4:-19325095 | MS.gene35155:intron |
AAACACACTTACCAGTAATA+CGG | 0.508460 | 4.4:+19326318 | None:intergenic |
CCTTCTACCACTCTTTCGGC+GGG | 0.512822 | 4.4:+19324669 | None:intergenic |
GCAGCAAGCATAGCAGCATA+TGG | 0.514159 | 4.4:+19325262 | None:intergenic |
TGCAATTACCTTGCATCTGG+TGG | 0.525795 | 4.4:+19325228 | None:intergenic |
GCTCGGTCAGGAATGAAAAT+CGG | 0.527587 | 4.4:-19324981 | MS.gene35155:CDS |
CCGCCGAAAGAGTGGTAGAA+GGG | 0.532687 | 4.4:-19324668 | MS.gene35155:CDS |
AGCATGTAACTGATTTATCT+GGG | 0.535775 | 4.4:-19326355 | MS.gene35155:CDS |
AAGGAAGAAACAGTGACTCT+TGG | 0.536189 | 4.4:-19326543 | MS.gene35155:CDS |
TTTCGGCGGGTGCTGTCAGA+AGG | 0.542032 | 4.4:+19324682 | None:intergenic |
GGTAAATAGACTCACGATGA+AGG | 0.542298 | 4.4:+19326455 | None:intergenic |
ATTGTAGTCGTCGAAGAGAA+AGG | 0.542368 | 4.4:-19326577 | MS.gene35155:intron |
CTTGGTCCAGCTGTTAAAGA+TGG | 0.556489 | 4.4:-19326525 | MS.gene35155:CDS |
TCTTGTTTCCTCCAGTAGCA+CGG | 0.560976 | 4.4:+19325048 | None:intergenic |
AAGACTAAAACACCAGGCCC+TGG | 0.563534 | 4.4:-19325029 | MS.gene35155:CDS |
GAGAAAGGTTAGAGAGCCAA+AGG | 0.564924 | 4.4:-19326562 | MS.gene35155:CDS |
GACAGCACCCGCCGAAAGAG+TGG | 0.584213 | 4.4:-19324676 | MS.gene35155:CDS |
TTCCTGACCGAGCCAATGCA+CGG | 0.590022 | 4.4:+19324991 | None:intergenic |
GGAATGAAAATCGGTCGCAT+AGG | 0.601542 | 4.4:-19324972 | MS.gene35155:intron |
AGATGTCGCCACCAGATGCA+AGG | 0.617051 | 4.4:-19325236 | MS.gene35155:intron |
GGTGCTGTCAGAAGGAATTG+GGG | 0.625333 | 4.4:+19324690 | None:intergenic |
CGCCGAAAGAGTGGTAGAAG+GGG | 0.627165 | 4.4:-19324667 | MS.gene35155:CDS |
ATCAAACTCCGTGCTACTGG+AGG | 0.632452 | 4.4:-19325056 | MS.gene35155:CDS |
GGAGAGCAGCCTGAGCACCA+GGG | 0.667118 | 4.4:+19325012 | None:intergenic |
GGAAACAAGACTAAAACACC+AGG | 0.683642 | 4.4:-19325035 | MS.gene35155:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATAAGTCAATCAAAA+TGG | + | chr4.4:19325389-19325408 | None:intergenic | 15.0% |
!! | AAAAATAAGTCAATCAAAAT+GGG | + | chr4.4:19325388-19325407 | None:intergenic | 15.0% |
!! | AACACAAAATAAAAAACATT+TGG | - | chr4.4:19325839-19325858 | MS.gene35155:intron | 15.0% |
!! | ACACAAAATAAAAAACATTT+GGG | - | chr4.4:19325840-19325859 | MS.gene35155:intron | 15.0% |
!!! | AAAAAACACACAATTTTTTT+TGG | + | chr4.4:19324991-19325010 | None:intergenic | 15.0% |
!!! | TTTTGATAAATTTTCCAAAA+TGG | + | chr4.4:19325613-19325632 | None:intergenic | 15.0% |
!! | AACCCATAATGAAAAATATT+TGG | + | chr4.4:19325982-19326001 | None:intergenic | 20.0% |
!! | AATACAAAATAAGAGTAACT+GGG | + | chr4.4:19326600-19326619 | None:intergenic | 20.0% |
!! | AATTCAATCAAATTAAAAGC+AGG | + | chr4.4:19326245-19326264 | None:intergenic | 20.0% |
!! | ACCCATAATGAAAAATATTT+GGG | + | chr4.4:19325981-19326000 | None:intergenic | 20.0% |
!! | ATTCAATCAAATTAAAAGCA+GGG | + | chr4.4:19326244-19326263 | None:intergenic | 20.0% |
!! | ATTGTTATAGAAATAGCTTA+TGG | + | chr4.4:19325538-19325557 | None:intergenic | 20.0% |
!! | CAATTCAATTTCAATTTCAA+AGG | + | chr4.4:19324761-19324780 | None:intergenic | 20.0% |
!! | CTGCAAATTTAAAAAACAAA+AGG | + | chr4.4:19326683-19326702 | None:intergenic | 20.0% |
!! | GAAAATTTATCAAAATAAGC+TGG | - | chr4.4:19325618-19325637 | MS.gene35155:intron | 20.0% |
!! | TATCTAATTTACTATCTTTC+AGG | - | chr4.4:19326080-19326099 | MS.gene35155:intron | 20.0% |
!! | TTATTACAGATCAATGTTTA+TGG | + | chr4.4:19324671-19324690 | None:intergenic | 20.0% |
!!! | TATTCTTTTAGTCCATTTTT+AGG | - | chr4.4:19326453-19326472 | MS.gene35155:intron | 20.0% |
!!! | TTTGTTTTTTAAATTTGCAG+AGG | - | chr4.4:19326683-19326702 | MS.gene35155:intron | 20.0% |
! | AAAATTGTAAATGGCAAGAA+GGG | + | chr4.4:19325775-19325794 | None:intergenic | 25.0% |
! | ACTTACCATGATTAGATATA+AGG | - | chr4.4:19325362-19325381 | MS.gene35155:intron | 25.0% |
! | ATAGCTTATATGAAAACACT+TGG | + | chr4.4:19325574-19325593 | None:intergenic | 25.0% |
! | ATTGCTCCATTTATATTATC+AGG | + | chr4.4:19325805-19325824 | None:intergenic | 25.0% |
! | ATTTCACTACAAACACTTTA+TGG | - | chr4.4:19324690-19324709 | MS.gene35155:CDS | 25.0% |
! | GAATACAAAATAAGAGTAAC+TGG | + | chr4.4:19326601-19326620 | None:intergenic | 25.0% |
! | TAGCTTATATGAAAACACTT+GGG | + | chr4.4:19325573-19325592 | None:intergenic | 25.0% |
! | TGGAATGAATGATAAAAAGA+AGG | + | chr4.4:19324971-19324990 | None:intergenic | 25.0% |
! | TTCAATCAAATTAAAAGCAG+GGG | + | chr4.4:19326243-19326262 | None:intergenic | 25.0% |
! | TTGCTCCATTTATATTATCA+GGG | + | chr4.4:19325804-19325823 | None:intergenic | 25.0% |
!! | AAATGGAGCAATTCTTTTAT+TGG | - | chr4.4:19325813-19325832 | MS.gene35155:intron | 25.0% |
!! | GCCCAAATATTTTTCATTAT+GGG | - | chr4.4:19325977-19325996 | MS.gene35155:intron | 25.0% |
!! | TATGTTTGATATGTGTTTTG+TGG | - | chr4.4:19325231-19325250 | MS.gene35155:intron | 25.0% |
!! | TGCCCAAATATTTTTCATTA+TGG | - | chr4.4:19325976-19325995 | MS.gene35155:intron | 25.0% |
AAACACACTTACCAGTAATA+CGG | + | chr4.4:19325087-19325106 | None:intergenic | 30.0% | |
AAATAGCTTATGGACATGTT+GGG | + | chr4.4:19325528-19325547 | None:intergenic | 30.0% | |
AAGCTAATTAGATACTAAGC+TGG | + | chr4.4:19326659-19326678 | None:intergenic | 30.0% | |
AAGTTGGAAATAACCAAACA+GGG | + | chr4.4:19325331-19325350 | None:intergenic | 30.0% | |
ACATTATGCAAAACAGCTTA+TGG | + | chr4.4:19325489-19325508 | None:intergenic | 30.0% | |
ATAAATGAGCGATTCTACTA+TGG | + | chr4.4:19326009-19326028 | None:intergenic | 30.0% | |
CAAAATTGTAAATGGCAAGA+AGG | + | chr4.4:19325776-19325795 | None:intergenic | 30.0% | |
CTAATTTACTATCTTTCAGG+TGG | - | chr4.4:19326083-19326102 | MS.gene35155:intron | 30.0% | |
CTCTACCCTGATAATATAAA+TGG | - | chr4.4:19325796-19325815 | MS.gene35155:intron | 30.0% | |
! | AAAGATGGTGAACAAGTTTT+TGG | - | chr4.4:19324892-19324911 | MS.gene35155:intron | 30.0% |
! | AGCATGTAACTGATTTATCT+GGG | - | chr4.4:19325047-19325066 | MS.gene35155:CDS | 30.0% |
! | TAAGTTGGAAATAACCAAAC+AGG | + | chr4.4:19325332-19325351 | None:intergenic | 30.0% |
!! | TTTGTGGAATTCTGTTTCTA+TGG | - | chr4.4:19325247-19325266 | MS.gene35155:CDS | 30.0% |
!!! | ACACTTGTTTTAGAGAACTT+AGG | + | chr4.4:19325711-19325730 | None:intergenic | 30.0% |
!!! | TGTTTTTCTCTAAGATCTGA+TGG | - | chr4.4:19324779-19324798 | MS.gene35155:intron | 30.0% |
AAATGCAATTACCTTGCATC+TGG | + | chr4.4:19326180-19326199 | None:intergenic | 35.0% | |
CAAAATAAGAGTAACTGGGA+AGG | + | chr4.4:19326596-19326615 | None:intergenic | 35.0% | |
CAAGACATGCATCCTAAAAA+TGG | + | chr4.4:19326468-19326487 | None:intergenic | 35.0% | |
GAAATAGCTTATGGACATGT+TGG | + | chr4.4:19325529-19325548 | None:intergenic | 35.0% | |
GGGTAGAGCAAAATTGTAAA+TGG | + | chr4.4:19325784-19325803 | None:intergenic | 35.0% | |
TAAGTGCACACACTATAAGT+TGG | + | chr4.4:19325347-19325366 | None:intergenic | 35.0% | |
! | AGATCTGATGGTTTGTGAAA+TGG | - | chr4.4:19324791-19324810 | MS.gene35155:intron | 35.0% |
! | ATGGGCCTTATATCTAATCA+TGG | + | chr4.4:19325370-19325389 | None:intergenic | 35.0% |
! | CAGCATGTAACTGATTTATC+TGG | - | chr4.4:19325046-19325065 | MS.gene35155:CDS | 35.0% |
!! | ATTTTCCAAAATGGCTTGTG+AGG | + | chr4.4:19325604-19325623 | None:intergenic | 35.0% |
!!! | CATTTTTAGGATGCATGTCT+TGG | - | chr4.4:19326466-19326485 | MS.gene35155:intron | 35.0% |
AAGGAAGAAACAGTGACTCT+TGG | - | chr4.4:19324859-19324878 | MS.gene35155:intron | 40.0% | |
ATTGTAGTCGTCGAAGAGAA+AGG | - | chr4.4:19324825-19324844 | MS.gene35155:intron | 40.0% | |
GGAAACAAGACTAAAACACC+AGG | - | chr4.4:19326367-19326386 | MS.gene35155:intron | 40.0% | |
GGTAAATAGACTCACGATGA+AGG | + | chr4.4:19324950-19324969 | None:intergenic | 40.0% | |
TGTTCACCATCTTTAACAGC+TGG | + | chr4.4:19324886-19324905 | None:intergenic | 40.0% | |
! | AATGGCAAGAAGGGTATGTT+TGG | + | chr4.4:19325766-19325785 | None:intergenic | 40.0% |
! | AGAGTCACTGTTTCTTCCTT+TGG | + | chr4.4:19324859-19324878 | None:intergenic | 40.0% |
! | CTATCTTTCAGGTGGAATGA+AGG | - | chr4.4:19326091-19326110 | MS.gene35155:intron | 40.0% |
! | CTGATGGTTTGTGAAATGGT+TGG | - | chr4.4:19324795-19324814 | MS.gene35155:intron | 40.0% |
!! | CACGATGAAGGTATCGTTAA+AGG | + | chr4.4:19324938-19324957 | None:intergenic | 40.0% |
AATTTGCCGATCCTGTGTTC+TGG | - | chr4.4:19326294-19326313 | MS.gene35155:intron | 45.0% | |
CTTGGTCCAGCTGTTAAAGA+TGG | - | chr4.4:19324877-19324896 | MS.gene35155:intron | 45.0% | |
GAGAAAGGTTAGAGAGCCAA+AGG | - | chr4.4:19324840-19324859 | MS.gene35155:intron | 45.0% | |
GAGACACTTGTCCGTATTAC+TGG | - | chr4.4:19325073-19325092 | MS.gene35155:CDS | 45.0% | |
GCTCGGTCAGGAATGAAAAT+CGG | - | chr4.4:19326421-19326440 | MS.gene35155:intron | 45.0% | |
GGAATGAAAATCGGTCGCAT+AGG | - | chr4.4:19326430-19326449 | MS.gene35155:intron | 45.0% | |
TACCCCTTCTACCACTCTTT+CGG | + | chr4.4:19326740-19326759 | None:intergenic | 45.0% | |
TGCAATTACCTTGCATCTGG+TGG | + | chr4.4:19326177-19326196 | None:intergenic | 45.0% | |
! | AGGGCACGAATCTTCACTTT+TGG | + | chr4.4:19325312-19325331 | None:intergenic | 45.0% |
! | TCTTGTTTCCTCCAGTAGCA+CGG | + | chr4.4:19326357-19326376 | None:intergenic | 45.0% |
!! | TGTGTTCTGGAACAGGAGTT+GGG | - | chr4.4:19326307-19326326 | MS.gene35155:intron | 45.0% |
AAGACTAAAACACCAGGCCC+TGG | - | chr4.4:19326373-19326392 | MS.gene35155:intron | 50.0% | |
ACATGCGTCCAGCTGGTTAA+TGG | + | chr4.4:19326044-19326063 | None:intergenic | 50.0% | |
AGAGTGGTAGAAGGGGTAGA+AGG | - | chr4.4:19326742-19326761 | MS.gene35155:intron | 50.0% | |
ATCACCAGCTTAGAGCAGCA+GGG | + | chr4.4:19326502-19326521 | None:intergenic | 50.0% | |
CAACTCCTGTTCCAGAACAC+AGG | + | chr4.4:19326308-19326327 | None:intergenic | 50.0% | |
CACATCAAACTCCGTGCTAC+TGG | - | chr4.4:19326343-19326362 | MS.gene35155:CDS | 50.0% | |
CCTGTTCCAGAACACAGGAT+CGG | + | chr4.4:19326303-19326322 | None:intergenic | 50.0% | |
CTTCGTTGCCATTAACCAGC+TGG | - | chr4.4:19326033-19326052 | MS.gene35155:intron | 50.0% | |
GCAGCAAGCATAGCAGCATA+TGG | + | chr4.4:19326143-19326162 | None:intergenic | 50.0% | |
GTGAAGATTCGTGCCCTGTT+TGG | - | chr4.4:19325315-19325334 | MS.gene35155:intron | 50.0% | |
! | ATCAAACTCCGTGCTACTGG+AGG | - | chr4.4:19326346-19326365 | MS.gene35155:CDS | 50.0% |
! | CCAAAATGGCTTGTGAGGAC+AGG | + | chr4.4:19325599-19325618 | None:intergenic | 50.0% |
! | CCTGTCCTCACAAGCCATTT+TGG | - | chr4.4:19325596-19325615 | MS.gene35155:intron | 50.0% |
! | GGGTGCTGTCAGAAGGAATT+GGG | + | chr4.4:19326716-19326735 | None:intergenic | 50.0% |
! | GGTGCTGTCAGAAGGAATTG+GGG | + | chr4.4:19326715-19326734 | None:intergenic | 50.0% |
! | TCTAAGCTGGTGATGTGGTC+TGG | - | chr4.4:19326508-19326527 | MS.gene35155:CDS | 50.0% |
!! | CTGTGTTCTGGAACAGGAGT+TGG | - | chr4.4:19326306-19326325 | MS.gene35155:intron | 50.0% |
AGATGTCGCCACCAGATGCA+AGG | - | chr4.4:19326166-19326185 | MS.gene35155:intron | 55.0% | |
CATCACCAGCTTAGAGCAGC+AGG | + | chr4.4:19326503-19326522 | None:intergenic | 55.0% | |
CCCTTCTACCACTCTTTCGG+CGG | + | chr4.4:19326737-19326756 | None:intergenic | 55.0% | |
CCGCCGAAAGAGTGGTAGAA+GGG | - | chr4.4:19326734-19326753 | MS.gene35155:intron | 55.0% | |
CCTTCTACCACTCTTTCGGC+GGG | + | chr4.4:19326736-19326755 | None:intergenic | 55.0% | |
CGCCGAAAGAGTGGTAGAAG+GGG | - | chr4.4:19326735-19326754 | MS.gene35155:intron | 55.0% | |
GACTTAGACATGCGTCCAGC+TGG | + | chr4.4:19326051-19326070 | None:intergenic | 55.0% | |
TTCCTGACCGAGCCAATGCA+CGG | + | chr4.4:19326414-19326433 | None:intergenic | 55.0% | |
! | CGGGTGCTGTCAGAAGGAAT+TGG | + | chr4.4:19326717-19326736 | None:intergenic | 55.0% |
! | GCTGCTCTAAGCTGGTGATG+TGG | - | chr4.4:19326503-19326522 | MS.gene35155:CDS | 55.0% |
! | TGTTCCCTGCTGCTCTAAGC+TGG | - | chr4.4:19326495-19326514 | MS.gene35155:CDS | 55.0% |
!! | CCGATCCTGTGTTCTGGAAC+AGG | - | chr4.4:19326300-19326319 | MS.gene35155:intron | 55.0% |
CCCGCCGAAAGAGTGGTAGA+AGG | - | chr4.4:19326733-19326752 | MS.gene35155:intron | 60.0% | |
TCAGGCTGCTCTCCGTGCAT+TGG | - | chr4.4:19326399-19326418 | MS.gene35155:intron | 60.0% | |
! | TTTCGGCGGGTGCTGTCAGA+AGG | + | chr4.4:19326723-19326742 | None:intergenic | 60.0% |
!! | CTGCTCTCCGTGCATTGGCT+CGG | - | chr4.4:19326404-19326423 | MS.gene35155:intron | 60.0% |
AACACCAGGCCCTGGTGCTC+AGG | - | chr4.4:19326381-19326400 | MS.gene35155:intron | 65.0% | |
GACAGCACCCGCCGAAAGAG+TGG | - | chr4.4:19326726-19326745 | MS.gene35155:intron | 65.0% | |
GGAGAGCAGCCTGAGCACCA+GGG | + | chr4.4:19326393-19326412 | None:intergenic | 65.0% | |
!! | CTCCGTGCATTGGCTCGGTC+AGG | - | chr4.4:19326409-19326428 | MS.gene35155:intron | 65.0% |
CGGAGAGCAGCCTGAGCACC+AGG | + | chr4.4:19326394-19326413 | None:intergenic | 70.0% | |
GCAGCCTGAGCACCAGGGCC+TGG | + | chr4.4:19326388-19326407 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 19324654 | 19326770 | 19324654 | ID=MS.gene35155 |
chr4.4 | mRNA | 19324654 | 19326770 | 19324654 | ID=MS.gene35155.t1;Parent=MS.gene35155 |
chr4.4 | exon | 19326768 | 19326770 | 19326768 | ID=MS.gene35155.t1.exon1;Parent=MS.gene35155.t1 |
chr4.4 | CDS | 19326768 | 19326770 | 19326768 | ID=cds.MS.gene35155.t1;Parent=MS.gene35155.t1 |
chr4.4 | exon | 19326470 | 19326592 | 19326470 | ID=MS.gene35155.t1.exon2;Parent=MS.gene35155.t1 |
chr4.4 | CDS | 19326470 | 19326592 | 19326470 | ID=cds.MS.gene35155.t1;Parent=MS.gene35155.t1 |
chr4.4 | exon | 19326330 | 19326375 | 19326330 | ID=MS.gene35155.t1.exon3;Parent=MS.gene35155.t1 |
chr4.4 | CDS | 19326330 | 19326375 | 19326330 | ID=cds.MS.gene35155.t1;Parent=MS.gene35155.t1 |
chr4.4 | exon | 19325237 | 19325322 | 19325237 | ID=MS.gene35155.t1.exon4;Parent=MS.gene35155.t1 |
chr4.4 | CDS | 19325237 | 19325322 | 19325237 | ID=cds.MS.gene35155.t1;Parent=MS.gene35155.t1 |
chr4.4 | exon | 19324973 | 19325102 | 19324973 | ID=MS.gene35155.t1.exon5;Parent=MS.gene35155.t1 |
chr4.4 | CDS | 19324973 | 19325102 | 19324973 | ID=cds.MS.gene35155.t1;Parent=MS.gene35155.t1 |
chr4.4 | exon | 19324654 | 19324721 | 19324654 | ID=MS.gene35155.t1.exon6;Parent=MS.gene35155.t1 |
chr4.4 | CDS | 19324654 | 19324721 | 19324654 | ID=cds.MS.gene35155.t1;Parent=MS.gene35155.t1 |
Gene Sequence |
Protein sequence |