AlfalfaGEDB | MS.gene77822

M. sativa cultivar XinJiangDaYe / MS.gene77822

KEGG: K10418
GO: GO:0005575 GO:0005875 GO:0007017 GO:0008150 GO:0009987 GO:0030286 GO:0032991 GO:1902494
PFAM: PF01221.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77822.t1	XP_003609697.1	98.1	103	2	0	1	103	1	103	6.30E-47	196.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77822.t1	Q3MHR3	62.7	59	22	0	45	103	4	62	3.8e-16	85.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77822.t1	G7JLJ9	98.1	103	2	0	1	103	1	103	4.6e-47	196.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene99872	MS.gene77822	PPI
MS.gene016178	MS.gene77822	PPI
MS.gene043643	MS.gene77822	PPI
MS.gene81099	MS.gene77822	PPI
MS.gene071366	MS.gene77822	PPI
MS.gene29908	MS.gene77822	PPI
MS.gene25633	MS.gene77822	PPI
MS.gene77822	MS.gene043595	PPI
MS.gene77822	MS.gene09543	PPI
MS.gene015202	MS.gene77822	PPI
MS.gene070831	MS.gene77822	PPI
MS.gene071364	MS.gene77822	PPI
MS.gene043645	MS.gene77822	PPI
MS.gene77822	MS.gene028302	PPI
MS.gene96225	MS.gene77822	PPI
MS.gene070946	MS.gene77822	PPI
MS.gene77822	MS.gene002746	PPI
MS.gene043593	MS.gene77822	PPI
MS.gene015206	MS.gene77822	PPI
MS.gene25632	MS.gene77822	PPI
MS.gene77822	MS.gene043821	PPI
MS.gene043818	MS.gene77822	PPI
MS.gene024860	MS.gene77822	PPI
MS.gene064353	MS.gene77822	PPI
MS.gene77163	MS.gene77822	PPI
MS.gene95803	MS.gene77822	PPI
MS.gene77822	MS.gene35155	PPI
MS.gene035825	MS.gene77822	PPI
MS.gene77822	MS.gene34372	PPI
MS.gene77822	MS.gene051574	PPI
MS.gene49473	MS.gene77822	PPI
MS.gene21834	MS.gene77822	PPI
MS.gene77822	MS.gene09540	PPI
MS.gene77822	MS.gene004435	PPI
MS.gene73093	MS.gene77822	PPI
MS.gene77822	MS.gene25631	PPI
MS.gene035826	MS.gene77822	PPI
MS.gene77160	MS.gene77822	PPI
MS.gene33030	MS.gene77822	PPI
MS.gene070829	MS.gene77822	PPI
MS.gene064351	MS.gene77822	PPI
MS.gene035828	MS.gene77822	PPI
MS.gene023152	MS.gene77822	PPI
MS.gene20245	MS.gene77822	PPI
MS.gene001031	MS.gene77822	PPI
MS.gene36490	MS.gene77822	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77822.t1	MTR_4g120150	98.058	103	2	0	1	103	1	103	1.79e-71	209
MS.gene77822.t1	MTR_8g464690	48.333	60	29	1	46	103	5	64	4.14e-15	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77822.t1	AT4G15930	58.252	103	36	3	1	103	1	96	4.74e-35	115
MS.gene77822.t1	AT4G15930	58.252	103	36	3	1	103	1	96	5.75e-35	116

Find 0 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATTAGAAAAAATTGAAGA+AGG	-	32570:7986-8005	MS.gene77822:intergenic	15.0%
!!!	TATTGTTTTGAAATTGAATT+AGG	+	32570:8030-8049	MS.gene77822:intron	15.0%
	AATTGAATTAGGCATTTGAG+AGG	+	32570:8041-8060	MS.gene77822:intron	30.0%
	TAAAGAAGGAGTTTGACAAG+AGG	+	32570:8095-8114	MS.gene77822:CDS	35.0%
	TGTTGCAGAGACTATAAAGA+AGG	+	32570:8081-8100	MS.gene77822:CDS	35.0%
!	AACAAGTGGTTTTCGATCTT+CGG	-	32570:7809-7828	MS.gene77822:intergenic	35.0%
	AACAACGACAGCGATATCAA+CGG	-	32570:7929-7948	MS.gene77820:intergenic	40.0%
	ATAATGACCTTCTTCGTTGC+GGG	-	32570:7868-7887	MS.gene77822:intergenic	40.0%
	CCAACAATACAATGCCAAGT+AGG	-	32570:8127-8146	MS.gene77822:intergenic	40.0%
	CCTACTTGGCATTGTATTGT+TGG	+	32570:8124-8143	MS.gene77822:CDS	40.0%
	GATAATGACCTTCTTCGTTG+CGG	-	32570:7869-7888	MS.gene77822:intergenic	40.0%
	AAGGAGTTTGACAAGAGGCA+TGG	+	32570:8100-8119	MS.gene77822:CDS	45.0%
	GAGAGTGGAGATGTAACAAG+TGG	-	32570:7823-7842	MS.gene77822:intergenic	45.0%
	TATGCTCCCTGACATGCAAA+AGG	+	32570:7900-7919	MS.gene77822:CDS	45.0%
!	TGGTTTTCGATCTTCGGTGA+GGG	-	32570:7803-7822	MS.gene77822:intergenic	45.0%
!	TTGCATGTCAGGGAGCATAT+CGG	-	32570:7899-7918	MS.gene77822:intergenic	45.0%
!	ACAAGAGGCATGGTCCTACT+TGG	+	32570:8110-8129	MS.gene77822:CDS	50.0%
!	ACGGCTTCCTTTTGCATGTC+AGG	-	32570:7910-7929	MS.gene77822:intergenic	50.0%
!	CGGCTTCCTTTTGCATGTCA+GGG	-	32570:7909-7928	MS.gene77822:intergenic	50.0%
!	GTGGTTTTCGATCTTCGGTG+AGG	-	32570:7804-7823	MS.gene77822:intergenic	50.0%
!!	AGGTGGAGGAGCATCTCTAA+TGG	+	32570:7771-7790	MS.gene77822:CDS	50.0%
	TGCAACACCCGCAACGAAGA+AGG	+	32570:7858-7877	MS.gene77822:CDS	55.0%
!	TTCTTCGTTGCGGGTGTTGC+AGG	-	32570:7859-7878	MS.gene77822:intergenic	55.0%
	GGAGAAGCGGATGCAGAGAG+TGG	-	32570:7838-7857	MS.gene77822:intergenic	60.0%
!	AAGAAGCACAGCGCAGGTGG+AGG	+	32570:7757-7776	MS.gene77822:CDS	60.0%
!	TGCGGGTGTTGCAGGAGAAG+CGG	-	32570:7851-7870	MS.gene77822:intergenic	60.0%
!	GAGGCGAAGAAGCACAGCGC+AGG	+	32570:7751-7770	MS.gene77822:CDS	65.0%
!	GCGAAGAAGCACAGCGCAGG+TGG	+	32570:7754-7773	MS.gene77822:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
32570	gene	7742	8157	7742	ID=MS.gene77822
32570	mRNA	7742	8157	7742	ID=MS.gene77822.t1;Parent=MS.gene77822
32570	exon	7742	7945	7742	ID=MS.gene77822.t1.exon1;Parent=MS.gene77822.t1
32570	CDS	7742	7945	7742	ID=cds.MS.gene77822.t1;Parent=MS.gene77822.t1
32570	exon	8052	8157	8052	ID=MS.gene77822.t1.exon2;Parent=MS.gene77822.t1
32570	CDS	8052	8157	8052	ID=cds.MS.gene77822.t1;Parent=MS.gene77822.t1

Gene Sequence

>MS.gene77822

ATGAGCGAGGAGGCGAAGAAGCACAGCGCAGGTGGAGGAGCATCTCTAATGGCGAAATCCCTCACCGAAGATCGAAAACCACTTGTTACATCTCCACTCTCTGCATCCGCTTCTCCTGCAACACCCGCAACGAAGAAGGTCATTATCAAGAGTGCCGATATGCTCCCTGACATGCAAAAGGAAGCCGTTGATATCGCTGTCGTTGTTAGTCTCTCTTACTCTTCAACATTCACTTCTTCTTCCTTCTTCAATTTTTTCTAATTTTCATTTTTTTTTATTTTTTGCTAATATTGTTTTGAAATTGAATTAGGCATTTGAGAGGCACAGCGTAGAGAAAGATGTTGCAGAGACTATAAAGAAGGAGTTTGACAAGAGGCATGGTCCTACTTGGCATTGTATTGTTGGTCGCAATTTCG

Protein sequence

>MS.gene77822.t1

MSEEAKKHSAGGGASLMAKSLTEDRKPLVTSPLSASASPATPATKKVIIKSADMLPDMQKEAVDIAVVAFERHSVEKDVAETIKKEFDKRHGPTWHCIVGRNF