AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36490.t1 MTR_4g096790 100.000 151 0 0 1 151 1 151 7.46e-108 303
MS.gene36490.t1 MTR_2g019670 98.675 151 2 0 1 151 1 151 1.02e-106 301
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36490.t1 AT3G11510 90.580 138 13 0 3 140 2 139 9.06e-91 260
MS.gene36490.t1 AT3G52580 89.855 138 14 0 3 140 2 139 3.38e-90 259
MS.gene36490.t1 AT2G36160 89.130 138 15 0 3 140 2 139 1.83e-89 257
MS.gene36490.t1 ATCG00750 33.613 119 70 2 29 147 28 137 7.54e-12 59.7

Find 47 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGTCACTGTTTCTTCCTT+TGG 0.286906 4.1:+18303456 None:intergenic
CACGATGAAGGTATCGTTAA+AGG 0.289627 4.1:+18303377 None:intergenic
GGGTGCTGTCAGAAGGAATT+GGG 0.306077 4.1:+18301369 None:intergenic
GAAACACTTGTCCGTATTAC+TGG 0.323177 4.1:-18303239 MS.gene36490:intron
TACCCCTTCTACCACTCTTT+CGG 0.329294 4.1:+18301345 None:intergenic
CGGGTGCTGTCAGAAGGAAT+TGG 0.336102 4.1:+18301368 None:intergenic
CGGAGAGCAGCCTGAGCACC+AGG 0.397348 4.1:+18301691 None:intergenic
AACACCAGGCCCTGGTGCTC+AGG 0.414511 4.1:-18301701 MS.gene36490:CDS
CTCCGAGCCTTGGCTCGGTC+AGG 0.414628 4.1:-18301673 MS.gene36490:CDS
CCCGCCGAAAGAGTGGTAGA+AGG 0.418808 4.1:-18301349 MS.gene36490:CDS
CAGCATGTAACTGATTTGTC+TGG 0.432105 4.1:-18303266 MS.gene36490:CDS
TCAGGCTGCTCTCCGAGCCT+TGG 0.439119 4.1:-18301683 MS.gene36490:CDS
GCAGCCTGAGCACCAGGGCC+TGG 0.441174 4.1:+18301697 None:intergenic
AAATGCAATTACCTTGCATC+TGG 0.446928 4.1:+18301905 None:intergenic
CTATCTTTCAGGTGGAATGA+AGG 0.447568 4.1:-18301991 MS.gene36490:intron
AGAGTGGTAGAAGGGGTAGA+AGG 0.460011 4.1:-18301340 MS.gene36490:CDS
CCCTTCTACCACTCTTTCGG+CGG 0.475876 4.1:+18301348 None:intergenic
TGTTCACCATCTTTAACAGC+TGG 0.478914 4.1:+18303429 None:intergenic
CTGCTCTCCGAGCCTTGGCT+CGG 0.481498 4.1:-18301678 MS.gene36490:CDS
CACATCAAACTCCGTGCCAC+TGG 0.484727 4.1:-18301739 MS.gene36490:CDS
TGTGTTCTGGAACAGGAGTT+GGG 0.489912 4.1:-18301775 MS.gene36490:intron
TTTAGTCTTGTTTCCTCCAG+TGG 0.507848 4.1:+18301723 None:intergenic
AAACACACTTACCAGTAATA+CGG 0.508460 4.1:+18303228 None:intergenic
CCTTCTACCACTCTTTCGGC+GGG 0.512822 4.1:+18301349 None:intergenic
GCAGCAAGCATAGCAGCATA+TGG 0.514159 4.1:+18301942 None:intergenic
GCTCGGTCAGGAATGAAAAT+CGG 0.525104 4.1:-18301661 MS.gene36490:CDS
TGCAATTACCTTGCATCTGG+TGG 0.525795 4.1:+18301908 None:intergenic
CCGCCGAAAGAGTGGTAGAA+GGG 0.532687 4.1:-18301348 MS.gene36490:CDS
AAGGAAGAAACAGTGACTCT+TGG 0.536189 4.1:-18303453 MS.gene36490:CDS
TTTCGGCGGGTGCTGTCAGA+AGG 0.542032 4.1:+18301362 None:intergenic
GGTAAATAGACTCACGATGA+AGG 0.542298 4.1:+18303365 None:intergenic
ATTGTAGTCGTCGAAGAGAA+AGG 0.542368 4.1:-18303487 MS.gene36490:intron
TCTTGTTTCCTCCAGTGGCA+CGG 0.542571 4.1:+18301728 None:intergenic
TTCCTGACCGAGCCAAGGCT+CGG 0.542845 4.1:+18301671 None:intergenic
CTTGGTCCAGCTGTTAAAGA+TGG 0.556489 4.1:-18303435 MS.gene36490:CDS
AAGACTAAAACACCAGGCCC+TGG 0.563534 4.1:-18301709 MS.gene36490:CDS
GAGAAAGGTTAGAGAGCCAA+AGG 0.564924 4.1:-18303472 MS.gene36490:CDS
GACAGCACCCGCCGAAAGAG+TGG 0.584213 4.1:-18301356 MS.gene36490:CDS
TTTCATTCCTGACCGAGCCA+AGG 0.585926 4.1:+18301666 None:intergenic
GGAATGAAAATCGGTCGCAT+AGG 0.601542 4.1:-18301652 MS.gene36490:intron
ATCAAACTCCGTGCCACTGG+AGG 0.606930 4.1:-18301736 MS.gene36490:CDS
AGATGTCGCCACCAGATGCA+AGG 0.617051 4.1:-18301916 MS.gene36490:intron
AGCATGTAACTGATTTGTCT+GGG 0.620131 4.1:-18303265 MS.gene36490:CDS
GGTGCTGTCAGAAGGAATTG+GGG 0.625333 4.1:+18301370 None:intergenic
CGCCGAAAGAGTGGTAGAAG+GGG 0.627165 4.1:-18301347 MS.gene36490:CDS
GGAGAGCAGCCTGAGCACCA+GGG 0.647832 4.1:+18301692 None:intergenic
GGAAACAAGACTAAAACACC+AGG 0.683642 4.1:-18301715 MS.gene36490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAGTCAATCAAAA+TGG + chr4.1:18302075-18302094 None:intergenic 15.0%
!! AAAAATAAGTCAATCAAAAT+GGG + chr4.1:18302074-18302093 None:intergenic 15.0%
!! AATTTCAATTTCAATTTCAA+AGG + chr4.1:18301441-18301460 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + chr4.1:18302743-18302762 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr4.1:18302744-18302763 None:intergenic 15.0%
!! AAAAAACACACAAAACAATT+TGG + chr4.1:18301677-18301696 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr4.1:18302719-18302738 None:intergenic 20.0%
!! AACACCAAATAAAAAACATT+TGG - chr4.1:18302524-18302543 MS.gene36490:intron 20.0%
!! AACCCATAATGAAAAATATT+TGG + chr4.1:18302898-18302917 None:intergenic 20.0%
!! AATACAAAATAAGAGTAACT+GGG + chr4.1:18303516-18303535 None:intergenic 20.0%
!! AATTCAATCAAATTAAAAGC+AGG + chr4.1:18303161-18303180 None:intergenic 20.0%
!! ACACCAAATAAAAAACATTT+GGG - chr4.1:18302525-18302544 MS.gene36490:intron 20.0%
!! ACCCATAATGAAAAATATTT+GGG + chr4.1:18302897-18302916 None:intergenic 20.0%
!! ACTTATCATGATTAGATATA+TGG - chr4.1:18302048-18302067 MS.gene36490:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr4.1:18302646-18302665 None:intergenic 20.0%
!! ATTCAATCAAATTAAAAGCA+GGG + chr4.1:18303160-18303179 None:intergenic 20.0%
!! ATTTAGTGTTACATTGTATT+GGG + chr4.1:18302678-18302697 None:intergenic 20.0%
!! CTGCAAATTTAAAAAACAAA+AGG + chr4.1:18303599-18303618 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr4.1:18302645-18302664 None:intergenic 20.0%
!! TATTTAGTGTTACATTGTAT+TGG + chr4.1:18302679-18302698 None:intergenic 20.0%
!! TTATTACAGATCAATGTTTA+TGG + chr4.1:18301351-18301370 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + chr4.1:18302742-18302761 None:intergenic 20.0%
!!! TATTCTTTTAGTCCATTTTT+AGG - chr4.1:18303369-18303388 MS.gene36490:intron 20.0%
!!! TTTGTTTTTTAAATTTGCAG+AGG - chr4.1:18303599-18303618 MS.gene36490:intron 20.0%
! AAAAATAAGCTAATCCTAAC+AGG - chr4.1:18302197-18302216 MS.gene36490:intron 25.0%
! AAAATTGTAAATGGCAAGAA+GGG + chr4.1:18302460-18302479 None:intergenic 25.0%
! ATAGCTTATATGAAAACACT+TGG + chr4.1:18302260-18302279 None:intergenic 25.0%
! ATTGCTCCATTTATATTATC+AGG + chr4.1:18302490-18302509 None:intergenic 25.0%
! ATTTCACTACAAACACTTTA+TGG - chr4.1:18301370-18301389 MS.gene36490:CDS 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr4.1:18302720-18302739 None:intergenic 25.0%
! GAATACAAAATAAGAGTAAC+TGG + chr4.1:18303517-18303536 None:intergenic 25.0%
! TAGCTTATATGAAAACACTT+GGG + chr4.1:18302259-18302278 None:intergenic 25.0%
! TGTCTAATTTACTATCTTTC+AGG - chr4.1:18302996-18303015 MS.gene36490:intron 25.0%
! TTCAATCAAATTAAAAGCAG+GGG + chr4.1:18303159-18303178 None:intergenic 25.0%
! TTGCTCCATTTATATTATCA+GGG + chr4.1:18302489-18302508 None:intergenic 25.0%
!! GCCCAAATATTTTTCATTAT+GGG - chr4.1:18302893-18302912 MS.gene36490:intron 25.0%
!! TATGTTTGATATGTGTTTTG+TGG - chr4.1:18301917-18301936 MS.gene36490:CDS 25.0%
!! TGCCCAAATATTTTTCATTA+TGG - chr4.1:18302892-18302911 MS.gene36490:intron 25.0%
!!! GGGACTTTTTTTTAGAAAAT+GGG + chr4.1:18302611-18302630 None:intergenic 25.0%
!!! TGGGACTTTTTTTTAGAAAA+TGG + chr4.1:18302612-18302631 None:intergenic 25.0%
AAACACACTTACCAGTAATA+CGG + chr4.1:18301773-18301792 None:intergenic 30.0%
AAATAGCTTATGAACCTGTT+AGG + chr4.1:18302214-18302233 None:intergenic 30.0%
AAATGGAGCAATTCTTCTAT+TGG - chr4.1:18302498-18302517 MS.gene36490:intron 30.0%
AAGCTAATTAGATACTAAGC+TGG + chr4.1:18303575-18303594 None:intergenic 30.0%
AAGTTGGAAATAACCAAACA+GGG + chr4.1:18302017-18302036 None:intergenic 30.0%
AATGCCAAAAGTGAAGATTT+GGG - chr4.1:18301991-18302010 MS.gene36490:intron 30.0%
ACATTATGCAAAACAGCTTA+CGG + chr4.1:18302175-18302194 None:intergenic 30.0%
ATAAATGAGCGATTCTACTA+TGG + chr4.1:18302925-18302944 None:intergenic 30.0%
CAAAATTGTAAATGGCAAGA+AGG + chr4.1:18302461-18302480 None:intergenic 30.0%
CTAATTTACTATCTTTCAGG+TGG - chr4.1:18302999-18303018 MS.gene36490:intron 30.0%
CTCTACCCTGATAATATAAA+TGG - chr4.1:18302481-18302500 MS.gene36490:intron 30.0%
TGGAATGAATGATAAAACGA+AGG + chr4.1:18301657-18301676 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr4.1:18302735-18302754 None:intergenic 30.0%
! AAAGATGGTGAACAAGTTTT+TGG - chr4.1:18301578-18301597 MS.gene36490:intron 30.0%
! TAAGTTGGAAATAACCAAAC+AGG + chr4.1:18302018-18302037 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr4.1:18302632-18302651 None:intergenic 30.0%
!! ATTTTCCAAAATAGCTTGTG+AGG + chr4.1:18302290-18302309 None:intergenic 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr4.1:18302631-18302650 None:intergenic 30.0%
!!! ACACTTGTTTTAGAGAACTT+AGG + chr4.1:18302396-18302415 None:intergenic 30.0%
!!! GTGCCCAAATGTTTTTTATT+TGG + chr4.1:18302531-18302550 None:intergenic 30.0%
!!! TGTTTTTCTCTAAGATCTGA+TGG - chr4.1:18301465-18301484 MS.gene36490:intron 30.0%
AAATGCAATTACCTTGCATC+TGG + chr4.1:18303096-18303115 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr4.1:18302598-18302617 None:intergenic 35.0%
CAAAATAAGAGTAACTGGGA+AGG + chr4.1:18303512-18303531 None:intergenic 35.0%
CAAAGTAGGTCAATTAAACC+GGG - chr4.1:18302779-18302798 MS.gene36490:intron 35.0%
CAATGCCAAAAGTGAAGATT+TGG - chr4.1:18301990-18302009 MS.gene36490:intron 35.0%
CCAAAGTAGGTCAATTAAAC+CGG - chr4.1:18302778-18302797 MS.gene36490:intron 35.0%
GGGTAGAGCAAAATTGTAAA+TGG + chr4.1:18302469-18302488 None:intergenic 35.0%
TAAGTGCACACACTATAAGT+TGG + chr4.1:18302033-18302052 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr4.1:18302765-18302784 MS.gene36490:intron 35.0%
! AGATCTGATGGTTTGTGAAA+TGG - chr4.1:18301477-18301496 MS.gene36490:intron 35.0%
!! AGCATGTAACTGATTTGTCT+GGG - chr4.1:18301733-18301752 MS.gene36490:CDS 35.0%
!! TTTGTGGAACTCTGTTTCTA+TGG - chr4.1:18301933-18301952 MS.gene36490:CDS 35.0%
AAGGAAGAAACAGTGACTCT+TGG - chr4.1:18301545-18301564 MS.gene36490:intron 40.0%
ATTGTAGTCGTCGAAGAGAA+AGG - chr4.1:18301511-18301530 MS.gene36490:intron 40.0%
CACGACATGCATCCTAAAAA+TGG + chr4.1:18303384-18303403 None:intergenic 40.0%
CCGGTTTAATTGACCTACTT+TGG + chr4.1:18302781-18302800 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr4.1:18302597-18302616 None:intergenic 40.0%
GAAACACTTGTCCGTATTAC+TGG - chr4.1:18301759-18301778 MS.gene36490:CDS 40.0%
GGAAACAAGACTAAAACACC+AGG - chr4.1:18303283-18303302 MS.gene36490:intron 40.0%
GGTAAATAGACTCACGATGA+AGG + chr4.1:18301636-18301655 None:intergenic 40.0%
TGTTCACCATCTTTAACAGC+TGG + chr4.1:18301572-18301591 None:intergenic 40.0%
! AGAGTCACTGTTTCTTCCTT+TGG + chr4.1:18301545-18301564 None:intergenic 40.0%
! CTATCTTTCAGGTGGAATGA+AGG - chr4.1:18303007-18303026 MS.gene36490:intron 40.0%
! CTGATGGTTTGTGAAATGGT+TGG - chr4.1:18301481-18301500 MS.gene36490:intron 40.0%
!! AATTTGCTGATCCTGTGTTC+TGG - chr4.1:18303210-18303229 MS.gene36490:intron 40.0%
!! CACGATGAAGGTATCGTTAA+AGG + chr4.1:18301624-18301643 None:intergenic 40.0%
!! CAGCATGTAACTGATTTGTC+TGG - chr4.1:18301732-18301751 MS.gene36490:CDS 40.0%
!! TTTAGTCTTGTTTCCTCCAG+TGG + chr4.1:18303278-18303297 None:intergenic 40.0%
!!! CATTTTTAGGATGCATGTCG+TGG - chr4.1:18303382-18303401 MS.gene36490:CDS 40.0%
AAAAATTACTCCCTCCGTCC+CGG - chr4.1:18302576-18302595 MS.gene36490:intron 45.0%
AATGGCAAGAAGGGTCTGTT+TGG + chr4.1:18302451-18302470 None:intergenic 45.0%
ACATGCATCCAGCTGGTTAA+TGG + chr4.1:18302960-18302979 None:intergenic 45.0%
CTTGGTCCAGCTGTTAAAGA+TGG - chr4.1:18301563-18301582 MS.gene36490:intron 45.0%
GAGAAAGGTTAGAGAGCCAA+AGG - chr4.1:18301526-18301545 MS.gene36490:intron 45.0%
GCTCGGTCAGGAATGAAAAT+CGG - chr4.1:18303337-18303356 MS.gene36490:intron 45.0%
GGAATGAAAATCGGTCGCAT+AGG - chr4.1:18303346-18303365 MS.gene36490:intron 45.0%
GTAGGTCAATTAAACCGGGA+CGG - chr4.1:18302783-18302802 MS.gene36490:intron 45.0%
TACCCCTTCTACCACTCTTT+CGG + chr4.1:18303656-18303675 None:intergenic 45.0%
TGCAATTACCTTGCATCTGG+TGG + chr4.1:18303093-18303112 None:intergenic 45.0%
! AGGGCCCAAATCTTCACTTT+TGG + chr4.1:18301998-18302017 None:intergenic 45.0%
! CCAAAATAGCTTGTGAGGAC+AGG + chr4.1:18302285-18302304 None:intergenic 45.0%
! CCTGTCCTCACAAGCTATTT+TGG - chr4.1:18302282-18302301 MS.gene36490:intron 45.0%
!! TGTGTTCTGGAACAGGAGTT+GGG - chr4.1:18303223-18303242 MS.gene36490:intron 45.0%
AAGACTAAAACACCAGGCCC+TGG - chr4.1:18303289-18303308 MS.gene36490:intron 50.0%
AGAGTGGTAGAAGGGGTAGA+AGG - chr4.1:18303658-18303677 MS.gene36490:intron 50.0%
ATCACCAGCTTAGAGCAGCA+GGG + chr4.1:18303418-18303437 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr4.1:18302593-18302612 None:intergenic 50.0%
CAACTCCTGTTCCAGAACAC+AGG + chr4.1:18303224-18303243 None:intergenic 50.0%
CTTCGTTGCCATTAACCAGC+TGG - chr4.1:18302949-18302968 MS.gene36490:intron 50.0%
GACTTAGACATGCATCCAGC+TGG + chr4.1:18302967-18302986 None:intergenic 50.0%
GCAGCAAGCATAGCAGCATA+TGG + chr4.1:18303059-18303078 None:intergenic 50.0%
GTCAATTAAACCGGGACGGA+GGG - chr4.1:18302787-18302806 MS.gene36490:intron 50.0%
GTGAAGATTTGGGCCCTGTT+TGG - chr4.1:18302001-18302020 MS.gene36490:intron 50.0%
TTTCATTCCTGACCGAGCCA+AGG + chr4.1:18303335-18303354 None:intergenic 50.0%
! GGGTGCTGTCAGAAGGAATT+GGG + chr4.1:18303632-18303651 None:intergenic 50.0%
! GGTGCTGTCAGAAGGAATTG+GGG + chr4.1:18303631-18303650 None:intergenic 50.0%
! TCTAAGCTGGTGATGTGGTC+TGG - chr4.1:18303424-18303443 MS.gene36490:CDS 50.0%
! TCTTGTTTCCTCCAGTGGCA+CGG + chr4.1:18303273-18303292 None:intergenic 50.0%
!! CTGATCCTGTGTTCTGGAAC+AGG - chr4.1:18303216-18303235 MS.gene36490:intron 50.0%
!! CTGTGTTCTGGAACAGGAGT+TGG - chr4.1:18303222-18303241 MS.gene36490:intron 50.0%
AGATGTCGCCACCAGATGCA+AGG - chr4.1:18303082-18303101 MS.gene36490:intron 55.0%
CACATCAAACTCCGTGCCAC+TGG - chr4.1:18303259-18303278 MS.gene36490:CDS 55.0%
CATCACCAGCTTAGAGCAGC+AGG + chr4.1:18303419-18303438 None:intergenic 55.0%
CCCTTCTACCACTCTTTCGG+CGG + chr4.1:18303653-18303672 None:intergenic 55.0%
CCGCCGAAAGAGTGGTAGAA+GGG - chr4.1:18303650-18303669 MS.gene36490:intron 55.0%
CCTTCTACCACTCTTTCGGC+GGG + chr4.1:18303652-18303671 None:intergenic 55.0%
CGCCGAAAGAGTGGTAGAAG+GGG - chr4.1:18303651-18303670 MS.gene36490:intron 55.0%
GGTCAATTAAACCGGGACGG+AGG - chr4.1:18302786-18302805 MS.gene36490:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr4.1:18302589-18302608 None:intergenic 55.0%
! ATCAAACTCCGTGCCACTGG+AGG - chr4.1:18303262-18303281 MS.gene36490:CDS 55.0%
! CGGGTGCTGTCAGAAGGAAT+TGG + chr4.1:18303633-18303652 None:intergenic 55.0%
! CTCTTTTACTCCCTCCGTCC+CGG + chr4.1:18302800-18302819 None:intergenic 55.0%
! GCTGCTCTAAGCTGGTGATG+TGG - chr4.1:18303419-18303438 MS.gene36490:CDS 55.0%
! TGTTCCCTGCTGCTCTAAGC+TGG - chr4.1:18303411-18303430 MS.gene36490:CDS 55.0%
CCCGCCGAAAGAGTGGTAGA+AGG - chr4.1:18303649-18303668 MS.gene36490:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr4.1:18302590-18302609 None:intergenic 60.0%
TTCCTGACCGAGCCAAGGCT+CGG + chr4.1:18303330-18303349 None:intergenic 60.0%
! TTTCGGCGGGTGCTGTCAGA+AGG + chr4.1:18303639-18303658 None:intergenic 60.0%
AACACCAGGCCCTGGTGCTC+AGG - chr4.1:18303297-18303316 MS.gene36490:intron 65.0%
CTGCTCTCCGAGCCTTGGCT+CGG - chr4.1:18303320-18303339 MS.gene36490:intron 65.0%
GACAGCACCCGCCGAAAGAG+TGG - chr4.1:18303642-18303661 MS.gene36490:intron 65.0%
GGAGAGCAGCCTGAGCACCA+GGG + chr4.1:18303309-18303328 None:intergenic 65.0%
TCAGGCTGCTCTCCGAGCCT+TGG - chr4.1:18303315-18303334 MS.gene36490:intron 65.0%
CGGAGAGCAGCCTGAGCACC+AGG + chr4.1:18303310-18303329 None:intergenic 70.0%
!! CTCCGAGCCTTGGCTCGGTC+AGG - chr4.1:18303325-18303344 MS.gene36490:intron 70.0%
GCAGCCTGAGCACCAGGGCC+TGG + chr4.1:18303304-18303323 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 18301334 18303686 18301334 ID=MS.gene36490
chr4.1 mRNA 18301334 18303686 18301334 ID=MS.gene36490.t1;Parent=MS.gene36490
chr4.1 exon 18303684 18303686 18303684 ID=MS.gene36490.t1.exon1;Parent=MS.gene36490.t1
chr4.1 CDS 18303684 18303686 18303684 ID=cds.MS.gene36490.t1;Parent=MS.gene36490.t1
chr4.1 exon 18303380 18303502 18303380 ID=MS.gene36490.t1.exon2;Parent=MS.gene36490.t1
chr4.1 CDS 18303380 18303502 18303380 ID=cds.MS.gene36490.t1;Parent=MS.gene36490.t1
chr4.1 exon 18303240 18303285 18303240 ID=MS.gene36490.t1.exon3;Parent=MS.gene36490.t1
chr4.1 CDS 18303240 18303285 18303240 ID=cds.MS.gene36490.t1;Parent=MS.gene36490.t1
chr4.1 exon 18301917 18302002 18301917 ID=MS.gene36490.t1.exon4;Parent=MS.gene36490.t1
chr4.1 CDS 18301917 18302002 18301917 ID=cds.MS.gene36490.t1;Parent=MS.gene36490.t1
chr4.1 exon 18301653 18301782 18301653 ID=MS.gene36490.t1.exon5;Parent=MS.gene36490.t1
chr4.1 CDS 18301653 18301782 18301653 ID=cds.MS.gene36490.t1;Parent=MS.gene36490.t1
chr4.1 exon 18301334 18301401 18301334 ID=MS.gene36490.t1.exon6;Parent=MS.gene36490.t1
chr4.1 CDS 18301334 18301401 18301334 ID=cds.MS.gene36490.t1;Parent=MS.gene36490.t1
Gene Sequence

>MS.gene36490

ATGGTACGTTAACTCCATAAACATTGATCTGTAATAATTTCACTACAAACACTTTATGGCTTTTAATTTCAATTGTTAAGTCATTGAGCATACAAATCGATTTTCCTTTGAAATTGAAATTGAAATTGAAATGTTTTTCTCTAAGATCTGATGGTTTGTGAAATGGTTGGTTATGTAATTGTAGTCGTCGAAGAGAAAGGTTAGAGAGCCAAAGGAAGAAACAGTGACTCTTGGTCCAGCTGTTAAAGATGGTGAACAAGTTTTTGGTGTTGCTCGTATCTTTGCTTCCTTTAACGATACCTTCATCGTGAGTCTATTTACCTTCGTTTTATCATTCATTCCAAATTGTTTTGTGTGTTTTTTGATTTGTTGTTGTAATTCATTGAATTGATTTATTGCAGCATGTAACTGATTTGTCTGGGAGAGAAACACTTGTCCGTATTACTGGTAAGTGTGTTTTGTTTTGATTTCTTTTATCATTAAATTTGATCATTTTTGAAGTTATATTGAATTTTTTTCTCTATCTTAGTTGATTTGTGTGAATATCAGTTTTTATCTCATGATATTTGATTTATAAGATTATTATGTTTGATATGTGTTTTGTGGAACTCTGTTTCTATGGAACTTTTTTATTTTCAACTGATTATAAACTTAAGCAATGCCAAAAGTGAAGATTTGGGCCCTGTTTGGTTATTTCCAACTTATAGTGTGTGCACTTATCATGATTAGATATATGGCCCATTTTGATTGACTTATTTTTTAGTTTAAGAAAAATAGCTTATGCAAATAAATATACTTATGACAAGCTTATGAATAATACATAGAAGCTTATTTATTTCCGTAAGCTGTTTTGCATAATGTCAAAAAATAAGCTAATCCTAACAGGTTCATAAGCTATTTCTATAACAATAGATAATATAAACCCAAGTGTTTTCATATAAGCTATAACCTGTCCTCACAAGCTATTTTGGAAAATTTATGAAAATAAGCTGAAAACAGCTCATGACATAAACATATGAAAATAAGCTGAAACAGCTTATGAATGTCAAAAGCTGTCTTCCTAAGTTCTCTAAAACAAGTGTTTATGCTAGTAGATAAGCTTAAATAATCAATTCCAAACAGACCCTTCTTGCCATTTACAATTTTGCTCTACCCTGATAATATAAATGGAGCAATTCTTCTATTGGCACAACACCAAATAAAAAACATTTGGGCACACTCACATCAGTCGCATCAAATGAAAAAAATTACTCCCTCCGTCCCGGAATAACTGACCCATTTTCTAAAAAAAAGTCCCAAAATAACTGACCCATTTCAATTTTCAATACAACTTTCATCATTCCCAATACAATGTAACACTAAATAATACTACTTTTATCATTCCCAATACAATATATTCCACTTTCCCCTTTATTTATACACTTTTCTTAATCTGTGTGAAAAACCAAAGTAGGTCAATTAAACCGGGACGGAGGGAGTAAAAGAGAATAAAATTAAATGATGTTGATTGATGTGATTAAATTAATTTTGTTTTTATTTTTTTCATTAAGTGTGAGTGTGCCCAAATATTTTTCATTATGGGTTGTGACCATAGTAGAATCGCTCATTTATAGATCTTCGTTGCCATTAACCAGCTGGATGCATGTCTAAGTCTGTTTGTCTTGTCTAATTTACTATCTTTCAGGTGGAATGAAGGTCAAAGCTGACAGAGATGAGTCATCTCCATATGCTGCTATGCTTGCTGCACAAGATGTCGCCACCAGATGCAAGGTAATTGCATTTATTTGTATCTTGTTATTCATATGTGCTTTTTCTTGACAAGCCCCTGCTTTTAATTTGATTGAATTCGTATAATCTGATTGCAATTAGCTGTCATAATTTGCTGATCCTGTGTTCTGGAACAGGAGTTGGGCATAACTGCTCTTCACATCAAACTCCGTGCCACTGGAGGAAACAAGACTAAAACACCAGGCCCTGGTGCTCAGGCTGCTCTCCGAGCCTTGGCTCGGTCAGGAATGAAAATCGGTCGCATAGGTATTCTTTTAGTCCATTTTTAGGATGCATGTCGTGGTAAATTTGTTCCCTGCTGCTCTAAGCTGGTGATGTGGTCTGGTTTTTATGTGCTTTTGTTTTTTGTGTTGTGTTTGTGAATCTTGTTTATGAAGTAATAGTTCTCCTTCCCAGTTACTCTTATTTTGTATTCTCAGCATTTGACGATGAGTTTCTAAGTTTTGATATCCAGCTTAGTATCTAATTAGCTTGCCTTTTGTTTTTTAAATTTGCAGAGGATGTGACCCCAATTCCTTCTGACAGCACCCGCCGAAAGAGTGGTAGAAGGGGTAGAAGGCTCTGA
Protein sequence

>MS.gene36490.t1

MSSKRKVREPKEETVTLGPAVKDGEQVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL