AlfalfaGEDB | MS.gene024612

M. sativa cultivar XinJiangDaYe / MS.gene024612

KEGG: -
GO: -
PFAM: PF13302.10

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024612.t1	XP_003626377.2	97.7	176	4	0	1	176	1	176	1.00E-95	359.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024612.t1	O34569	29.7	175	115	4	4	172	5	177	1.1e-13	78.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024612.t1	G7L0S4	97.7	176	4	0	1	176	1	176	7.3e-96	359.4

TFs/TRs:

Gene ID	Type	Classification
MS.gene024612.t1	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene77154	MS.gene024612	PPI
MS.gene001038	MS.gene024612	PPI
MS.gene070945	MS.gene024612	PPI
MS.gene21830	MS.gene024612	PPI
MS.gene024612	MS.gene001034	PPI
MS.gene21833	MS.gene024612	PPI
MS.gene043815	MS.gene024612	PPI
MS.gene024612	MS.gene72809	PPI
MS.gene024858	MS.gene024612	PPI
MS.gene024859	MS.gene024612	PPI
MS.gene024612	MS.gene043813	PPI
MS.gene024855	MS.gene024612	PPI
MS.gene006418	MS.gene024612	PPI
MS.gene024612	MS.gene21831	PPI
MS.gene024612	MS.gene34371	PPI
MS.gene024612	MS.gene82121	PPI
MS.gene024612	MS.gene006417	PPI
MS.gene024612	MS.gene028111	PPI
MS.gene024612	MS.gene21827	PPI
MS.gene024612	MS.gene070944	PPI
MS.gene001033	MS.gene024612	PPI
MS.gene49468	MS.gene024612	PPI
MS.gene024612	MS.gene49470	PPI
MS.gene95802	MS.gene024612	PPI
MS.gene024854	MS.gene024612	PPI
MS.gene024612	MS.gene024857	PPI
MS.gene024612	MS.gene95801	PPI
MS.gene024612	MS.gene001037	PPI
MS.gene071361	MS.gene024612	PPI
MS.gene024612	MS.gene071357	PPI
MS.gene024612	MS.gene21828	PPI
MS.gene34370	MS.gene024612	PPI
MS.gene024612	MS.gene001032	PPI
MS.gene024612	MS.gene83474	PPI
MS.gene024612	MS.gene49471	PPI
MS.gene49472	MS.gene024612	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024612.t1	MTR_7g114410	97.727	176	4	0	1	176	1	176	2.02e-127	355
MS.gene024612.t1	MTR_7g114410	97.436	156	4	0	1	156	1	156	4.11e-112	316
MS.gene024612.t1	MTR_3g463610	62.573	171	61	1	4	171	3	173	1.21e-79	236
MS.gene024612.t1	MTR_7g024780	58.523	176	72	1	1	176	1	175	4.06e-71	213
MS.gene024612.t1	MTR_7g024765	60.920	174	66	2	1	174	1	172	4.52e-67	203
MS.gene024612.t1	MTR_7g024760	59.195	174	69	2	1	174	1	172	7.32e-67	202
MS.gene024612.t1	MTR_1g103150	46.784	171	86	2	4	171	19	187	6.47e-48	154
MS.gene024612.t1	MTR_1g103110	45.614	171	88	2	4	171	19	187	7.08e-47	152
MS.gene024612.t1	MTR_5g006450	42.442	172	96	1	3	171	16	187	1.47e-46	151
MS.gene024612.t1	MTR_5g006520	44.444	171	92	1	4	171	1735	1905	4.15e-45	159
MS.gene024612.t1	MTR_5g006470	43.787	169	94	1	4	171	17	185	2.12e-44	145
MS.gene024612.t1	MTR_5g006510	42.775	173	91	4	4	171	19	188	1.83e-41	138
MS.gene024612.t1	MTR_5g006460	43.429	175	90	5	4	171	18	190	1.86e-41	138

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024612.t1	AT3G22560	55.422	166	72	1	8	171	7	172	9.75e-64	194
MS.gene024612.t1	AT2G32030	47.305	167	84	2	8	173	24	187	4.77e-57	178
MS.gene024612.t1	AT2G32020	47.701	174	87	2	1	173	12	182	1.17e-56	177

Find 0 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AGAAAGTATACTTATATCAA+AGG	-	51739:30933-30952	MS.gene024612:CDS	20.0%
!!!	ATGATTTTTCTGATTTGTTA+AGG	-	51739:30829-30848	MS.gene024612:CDS	20.0%
	AGACATCTTTGATGAAAGTT+AGG	+	51739:30626-30645	MS.gene024612:intergenic	30.0%
	GACATCTTTGATGAAAGTTA+GGG	+	51739:30625-30644	MS.gene024612:intergenic	30.0%
!	TTTTACTTACGTGGATAACA+AGG	-	51739:30860-30879	MS.gene024612:CDS	30.0%
!!	TTATATCAAAGGTACCATCA+TGG	-	51739:30944-30963	MS.gene024612:CDS	30.0%
!!!	AGCAATTTTGATTGCTTTTG+TGG	+	51739:30793-30812	MS.gene024612:intergenic	30.0%
!!!	TTCTCAAAGAGTTTTGGAAA+AGG	-	51739:30884-30903	MS.gene024612:CDS	30.0%
	AAGTAACCAAAAACATCCGA+TGG	-	51739:30574-30593	MS.gene024612:CDS	35.0%
	ACGTTGACGATTTCATGTTA+TGG	-	51739:30538-30557	MS.gene024612:CDS	35.0%
	ATACACAGAAACAAAACCGA+TGG	+	51739:30694-30713	MS.gene024612:intergenic	35.0%
	ATGGAAAACTTGCAATTCGA+GGG	-	51739:30593-30612	MS.gene024612:CDS	35.0%
	CAGGAGACAAAATAATCAAC+AGG	+	51739:31011-31030	MS.gene024612:intergenic	35.0%
	CGTTGACGATTTCATGTTAT+GGG	-	51739:30539-30558	MS.gene024612:CDS	35.0%
	GAGACAAAATAATCAACAGG+AGG	+	51739:31008-31027	MS.gene024612:intergenic	35.0%
!	AGTTTTCCATCGGATGTTTT+TGG	+	51739:30583-30602	MS.gene024612:intergenic	35.0%
!	ATCTATCTAGGATATCTCTG+AGG	-	51739:30499-30518	MS.gene024612:CDS	35.0%
!	ATGCTGTTGCTTCTAACTAT+TGG	-	51739:30754-30773	MS.gene024612:CDS	35.0%
!	TCGAATTGCAAGTTTTCCAT+CGG	+	51739:30593-30612	MS.gene024612:intergenic	35.0%
!	TGCTGTTGCTTCTAACTATT+GGG	-	51739:30755-30774	MS.gene024612:CDS	35.0%
!!	TTCTGATTTGTTAAGGTTGC+AGG	-	51739:30836-30855	MS.gene024612:CDS	35.0%
!!!	AAAGAGTTTTGGAAAAGGCT+GGG	-	51739:30889-30908	MS.gene024612:CDS	35.0%
!!!	GTTTTGTTTCTGTGTATCCT+TGG	-	51739:30697-30716	MS.gene024612:CDS	35.0%
	AAAGACAGCCAAATCCATGA+TGG	+	51739:30961-30980	MS.gene024611:intergenic	40.0%
	ACGATTTCATGTTATGGGCA+GGG	-	51739:30544-30563	MS.gene024612:CDS	40.0%
	CAGAAACAAAACCGATGGAA+CGG	+	51739:30689-30708	MS.gene024612:intergenic	40.0%
	CTTCTAACTATTGGGGTCAA+GGG	-	51739:30763-30782	MS.gene024612:CDS	40.0%
	GATGGAAAACTTGCAATTCG+AGG	-	51739:30592-30611	MS.gene024612:CDS	40.0%
!	CAAGGCTTCTCAAAGAGTTT+TGG	-	51739:30878-30897	MS.gene024612:CDS	40.0%
!	GCTGTTGCTTCTAACTATTG+GGG	-	51739:30756-30775	MS.gene024612:CDS	40.0%
!	TCAACGTCTGTTAGCTTGAA+TGG	+	51739:30525-30544	MS.gene024612:intergenic	40.0%
!	TTCTAAGAACACCCTCTCTA+AGG	+	51739:30917-30936	MS.gene024612:intergenic	40.0%
!!	CAAAGGTACCATCATGGATT+TGG	-	51739:30950-30969	MS.gene024612:CDS	40.0%
!!!	CAAAGAGTTTTGGAAAAGGC+TGG	-	51739:30888-30907	MS.gene024612:CDS	40.0%
	ATCCTTGGTCAGGTGATGAT+AGG	-	51739:30712-30731	MS.gene024612:CDS	45.0%
	CGATTTCATGTTATGGGCAG+GGG	-	51739:30545-30564	MS.gene024612:CDS	45.0%
	GACGATTTCATGTTATGGGC+AGG	-	51739:30543-30562	MS.gene024612:CDS	45.0%
	GATAGGTGCAAAGCTGACAT+AGG	-	51739:30729-30748	MS.gene024612:CDS	45.0%
	GCTTCTAACTATTGGGGTCA+AGG	-	51739:30762-30781	MS.gene024612:CDS	45.0%
	GTTTCTGTGTATCCTTGGTC+AGG	-	51739:30702-30721	MS.gene024612:CDS	45.0%
	TGGCAAAGGTGGATCTATCT+AGG	-	51739:30487-30506	MS.gene024612:CDS	45.0%
!	GTTGCAGGCTTTTACTTACG+TGG	-	51739:30851-30870	MS.gene024612:CDS	45.0%
	AAAGGCTGGGTTCCTTAGAG+AGG	-	51739:30902-30921	MS.gene024612:CDS	50.0%
	AAGGCTGGGTTCCTTAGAGA+GGG	-	51739:30903-30922	MS.gene024612:CDS	50.0%
	AGACAGATCGAATGACGCCA+AGG	+	51739:30660-30679	MS.gene024612:intergenic	50.0%
	ATGTCTGCATACCTCACCCT+TGG	-	51739:30640-30659	MS.gene024612:CDS	50.0%
	CACCTATCATCACCTGACCA+AGG	+	51739:30717-30736	MS.gene024612:intergenic	50.0%
	GACAGATCGAATGACGCCAA+GGG	+	51739:30659-30678	MS.gene024612:intergenic	50.0%
	ATCGAATGACGCCAAGGGTG+AGG	+	51739:30654-30673	MS.gene024612:intergenic	55.0%
	TGTCTCGACGACCGTTCCAT+CGG	-	51739:30675-30694	MS.gene024612:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
51739	gene	30486	31043	30486	ID=MS.gene024612
51739	mRNA	30486	31043	30486	ID=MS.gene024612.t1;Parent=MS.gene024612
51739	exon	30486	31043	30486	ID=MS.gene024612.t1.exon1;Parent=MS.gene024612.t1
51739	CDS	30486	31043	30486	ID=cds.MS.gene024612.t1;Parent=MS.gene024612.t1

Gene Sequence

>MS.gene024612

ATGGCAAAGGTGGATCTATCTAGGATATCTCTGAGGCCATTCAAGCTAACAGACGTTGACGATTTCATGTTATGGGCAGGGGACGATGAAGTAACCAAAAACATCCGATGGAAAACTTGCAATTCGAGGGAAGAAGCCCTAACTTTCATCAAAGATGTCTGCATACCTCACCCTTGGCGTCATTCGATCTGTCTCGACGACCGTTCCATCGGTTTTGTTTCTGTGTATCCTTGGTCAGGTGATGATAGGTGCAAAGCTGACATAGGTTATGCTGTTGCTTCTAACTATTGGGGTCAAGGGATAGCCACAAAAGCAATCAAAATTGCTCTGTCTCAAGTGTTTAATGATTTTTCTGATTTGTTAAGGTTGCAGGCTTTTACTTACGTGGATAACAAGGCTTCTCAAAGAGTTTTGGAAAAGGCTGGGTTCCTTAGAGAGGGTGTTCTTAGAAAGTATACTTATATCAAAGGTACCATCATGGATTTGGCTGTCTTTAGTTTTTTGTCAACAGATGAAATTCCTCCTGTTGATTATTTTGTCTCCTGTTACTCTTTATGA

Protein sequence

>MS.gene024612.t1

MAKVDLSRISLRPFKLTDVDDFMLWAGDDEVTKNIRWKTCNSREEALTFIKDVCIPHPWRHSICLDDRSIGFVSVYPWSGDDRCKADIGYAVASNYWGQGIATKAIKIALSQVFNDFSDLLRLQAFTYVDNKASQRVLEKAGFLREGVLRKYTYIKGTIMDLAVFSFLSTDEIPPVDYFVSCYSL