Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49471.t1 | AES93696.1 | 84.2 | 171 | 22 | 4 | 1 | 167 | 1 | 170 | 8.10E-71 | 276.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49471.t1 | P05332 | 31.3 | 163 | 99 | 6 | 15 | 170 | 2 | 158 | 1.1e-10 | 68.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49471.t1 | G7K3P3 | 84.2 | 171 | 22 | 4 | 1 | 167 | 1 | 170 | 5.9e-71 | 276.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49471.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49471.t1 | MTR_5g006460 | 84.211 | 171 | 22 | 4 | 1 | 167 | 1 | 170 | 2.52e-97 | 282 |
| MS.gene49471.t1 | MTR_5g006510 | 76.647 | 167 | 34 | 2 | 1 | 167 | 7 | 168 | 6.00e-88 | 258 |
| MS.gene49471.t1 | MTR_5g006450 | 72.781 | 169 | 42 | 3 | 1 | 167 | 1 | 167 | 3.31e-79 | 236 |
| MS.gene49471.t1 | MTR_5g006470 | 71.598 | 169 | 42 | 4 | 1 | 167 | 1 | 165 | 2.22e-78 | 234 |
| MS.gene49471.t1 | MTR_5g006520 | 67.857 | 168 | 52 | 2 | 1 | 167 | 1719 | 1885 | 4.40e-68 | 227 |
| MS.gene49471.t1 | MTR_1g103110 | 60.234 | 171 | 60 | 5 | 1 | 167 | 1 | 167 | 1.14e-61 | 191 |
| MS.gene49471.t1 | MTR_1g103150 | 59.064 | 171 | 62 | 5 | 1 | 167 | 1 | 167 | 1.84e-60 | 188 |
| MS.gene49471.t1 | MTR_7g024780 | 41.176 | 153 | 86 | 2 | 16 | 168 | 3 | 151 | 1.72e-31 | 114 |
| MS.gene49471.t1 | MTR_7g114410 | 39.735 | 151 | 88 | 1 | 17 | 167 | 4 | 151 | 2.09e-31 | 113 |
| MS.gene49471.t1 | MTR_7g114410 | 39.735 | 151 | 88 | 1 | 17 | 167 | 4 | 151 | 2.93e-31 | 113 |
| MS.gene49471.t1 | MTR_7g024760 | 40.940 | 149 | 81 | 4 | 20 | 167 | 7 | 149 | 3.86e-30 | 110 |
| MS.gene49471.t1 | MTR_7g024765 | 40.667 | 150 | 82 | 5 | 20 | 168 | 7 | 150 | 8.86e-30 | 109 |
| MS.gene49471.t1 | MTR_3g463610 | 37.748 | 151 | 94 | 0 | 17 | 167 | 3 | 153 | 9.83e-28 | 105 |
| MS.gene49471.t1 | MTR_1g103320 | 52.439 | 82 | 37 | 1 | 50 | 131 | 10 | 89 | 2.43e-19 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49471.t1 | AT2G32020 | 51.316 | 152 | 63 | 6 | 20 | 168 | 18 | 161 | 3.77e-39 | 134 |
| MS.gene49471.t1 | AT2G32030 | 47.778 | 180 | 76 | 8 | 21 | 197 | 24 | 188 | 5.98e-38 | 130 |
| MS.gene49471.t1 | AT3G22560 | 35.484 | 155 | 93 | 3 | 16 | 167 | 2 | 152 | 9.22e-23 | 91.3 |
Find 51 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATCAAATGTGCAGAAAT+TGG | 0.218349 | 5.1:-1244728 | MS.gene49471:CDS |
| ATGAAAAGGTAGCCAAGTTC+TGG | 0.273400 | 5.1:-1244895 | MS.gene49471:CDS |
| CTCTTCATTGGCACATGGTT+TGG | 0.274557 | 5.1:+1244997 | None:intergenic |
| GCTTCAAGCCTTTCCAAGTA+TGG | 0.276638 | 5.1:+1244620 | None:intergenic |
| ATGTTCTAGGCTCTAAATAT+TGG | 0.292142 | 5.1:-1244703 | MS.gene49471:CDS |
| TGTTCTAGGCTCTAAATATT+GGG | 0.316974 | 5.1:-1244702 | MS.gene49471:CDS |
| TTGTTGATGTGGATAATTTA+TGG | 0.328127 | 5.1:-1244595 | MS.gene49471:CDS |
| TGCCATAATGATCATGCTAT+TGG | 0.333891 | 5.1:-1244791 | MS.gene49471:CDS |
| ACCCAATAGCATGATCATTA+TGG | 0.341789 | 5.1:+1244789 | None:intergenic |
| GCAGAAATTGGGTATGTTCT+AGG | 0.344662 | 5.1:-1244716 | MS.gene49471:CDS |
| CAAATCAATGATCTCTTCAT+TGG | 0.363988 | 5.1:+1244985 | None:intergenic |
| CCTTCGTCTTTGCTAGTGTA+AGG | 0.376096 | 5.1:+1244866 | None:intergenic |
| TGTGAAGCTTGCTGCTGAAC+AGG | 0.399282 | 5.1:+1242629 | None:intergenic |
| ATTTGTGCGCGTAGGTGATA+TGG | 0.401373 | 5.1:+1242539 | None:intergenic |
| GGCTCTAAATATTGGGGTAA+AGG | 0.406739 | 5.1:-1244695 | MS.gene49471:CDS |
| ATTCAGTGAATTTCCATACT+TGG | 0.413337 | 5.1:-1244633 | MS.gene49471:CDS |
| CACGTTTGCTGTGAAACAAA+TGG | 0.422199 | 5.1:-1244666 | MS.gene49471:CDS |
| GCTCTAAATATTGGGGTAAA+GGG | 0.428389 | 5.1:-1244694 | MS.gene49471:CDS |
| TTCTGACCTTGATGATGTAA+TGG | 0.440976 | 5.1:-1244933 | MS.gene49471:CDS |
| CAAAGAGTAGTTGAGAAAGT+TGG | 0.450786 | 5.1:-1244569 | MS.gene49471:CDS |
| GAAGATGTCGGAGTGTGATT+TGG | 0.453912 | 5.1:+1244960 | None:intergenic |
| GAATCAAATGTGCAGAAATT+GGG | 0.456981 | 5.1:-1244727 | MS.gene49471:CDS |
| TGCTGTGAAACAAATGGTTA+AGG | 0.473285 | 5.1:-1244660 | MS.gene49471:CDS |
| GCCATAATGATCATGCTATT+GGG | 0.478546 | 5.1:-1244790 | MS.gene49471:CDS |
| TGAAAAGGTAGCCAAGTTCT+GGG | 0.482152 | 5.1:-1244894 | MS.gene49471:CDS |
| GTGAATTTCCATACTTGGAA+AGG | 0.490341 | 5.1:-1244628 | MS.gene49471:CDS |
| GCTTGCTGCTGAACAGGAAA+CGG | 0.499122 | 5.1:+1242635 | None:intergenic |
| TCCCTCCGCAGTGTATTCAC+CGG | 0.533039 | 5.1:+1242685 | None:intergenic |
| CCCTCCGCAGTGTATTCACC+GGG | 0.566810 | 5.1:+1242686 | None:intergenic |
| GCTTGAAGCTCTTGTTGATG+TGG | 0.580383 | 5.1:-1244606 | MS.gene49471:CDS |
| CCCGGTGAATACACTGCGGA+GGG | 0.583486 | 5.1:-1242686 | MS.gene49471:CDS |
| TTGTAGGCTTAAGAAACGCC+CGG | 0.586951 | 5.1:-1242704 | MS.gene49471:intron |
| ACGGCGTGGAATTTGGCTCT+CGG | 0.591742 | 5.1:+1242600 | None:intergenic |
| GTGGCAGCAGACTGATGAAA+AGG | 0.594266 | 5.1:-1244909 | MS.gene49471:CDS |
| GCCACACCATTACATCATCA+AGG | 0.594693 | 5.1:+1244927 | None:intergenic |
| ATGATCTCTTCATTGGCACA+TGG | 0.598564 | 5.1:+1244992 | None:intergenic |
| GATATGGTGTACTGTAGACT+TGG | 0.616292 | 5.1:+1242555 | None:intergenic |
| AAAAGGTAGCCAAGTTCTGG+GGG | 0.620200 | 5.1:-1244892 | MS.gene49471:CDS |
| ATGGTGTACTGTAGACTTGG+AGG | 0.620908 | 5.1:+1242558 | None:intergenic |
| GAAAAGGTAGCCAAGTTCTG+GGG | 0.624494 | 5.1:-1244893 | MS.gene49471:CDS |
| GATATGCCTCACAGCAAGAA+CGG | 0.626057 | 5.1:-1242664 | MS.gene49471:CDS |
| GTTCTAGGCTCTAAATATTG+GGG | 0.628624 | 5.1:-1244701 | MS.gene49471:CDS |
| GGTCAGAAAGATGAAGATGT+CGG | 0.630507 | 5.1:+1244948 | None:intergenic |
| GCCCGGTGAATACACTGCGG+AGG | 0.637373 | 5.1:-1242687 | MS.gene49471:CDS |
| CATTTGTTTCACAGCAAACG+TGG | 0.659491 | 5.1:+1244667 | None:intergenic |
| ACATCACCGTTCTTGCTGTG+AGG | 0.674400 | 5.1:+1242658 | None:intergenic |
| ACCTTGATGATGTAATGGTG+TGG | 0.697032 | 5.1:-1244928 | MS.gene49471:CDS |
| GAGCTGTCATTTGTGCGCGT+AGG | 0.698927 | 5.1:+1242531 | None:intergenic |
| CCTTACACTAGCAAAGACGA+AGG | 0.715657 | 5.1:-1244866 | MS.gene49471:CDS |
| AAAGGTAGCCAAGTTCTGGG+GGG | 0.779565 | 5.1:-1244891 | MS.gene49471:CDS |
| AACGCCCGGTGAATACACTG+CGG | 0.820971 | 5.1:-1242690 | MS.gene49471:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGGATTTCTTTATATTT+AGG | + | chr5.1:1243564-1243583 | None:intergenic | 15.0% |
| !!! | ACTAATTTTTTGTTATCAAT+GGG | + | chr5.1:1244341-1244360 | None:intergenic | 15.0% |
| !!! | ATTTTGTATTATTGGTATTA+TGG | + | chr5.1:1243676-1243695 | None:intergenic | 15.0% |
| !! | ATTCAGATTAAATTTCTCAT+TGG | - | chr5.1:1243877-1243896 | MS.gene49471:intron | 20.0% |
| !! | TCATAATTGGATAAATACTT+TGG | + | chr5.1:1243488-1243507 | None:intergenic | 20.0% |
| !! | TGCAAAAAATTTCAGTTATT+TGG | + | chr5.1:1244226-1244245 | None:intergenic | 20.0% |
| !!! | ACATGTCTATTTTGTATTAT+TGG | + | chr5.1:1243684-1243703 | None:intergenic | 20.0% |
| !!! | ATTTAATCTGAATTTTGTTG+TGG | + | chr5.1:1243870-1243889 | None:intergenic | 20.0% |
| !!! | CACTAATTTTTTGTTATCAA+TGG | + | chr5.1:1244342-1244361 | None:intergenic | 20.0% |
| !!! | CATTGATAACAAAAAATTAG+TGG | - | chr5.1:1244340-1244359 | MS.gene49471:intron | 20.0% |
| !!! | TTATTAATTTATTGGTTGTC+CGG | - | chr5.1:1243207-1243226 | MS.gene49471:intron | 20.0% |
| ! | AAAATATTATCGCATTGAGA+AGG | - | chr5.1:1243800-1243819 | MS.gene49471:intron | 25.0% |
| ! | AATCTCCTATCAAGTAATTA+AGG | - | chr5.1:1243270-1243289 | MS.gene49471:intron | 25.0% |
| ! | AGATTGTACGATGATATATT+TGG | + | chr5.1:1243255-1243274 | None:intergenic | 25.0% |
| ! | ATGGTTATTTACACCTTATA+TGG | + | chr5.1:1243657-1243676 | None:intergenic | 25.0% |
| ! | CAAAATCATCTCTTTAACTA+TGG | - | chr5.1:1243914-1243933 | MS.gene49471:intron | 25.0% |
| ! | CAAAATTGAGAAAAGATTAG+AGG | - | chr5.1:1243129-1243148 | MS.gene49471:intron | 25.0% |
| ! | GCAGAATTGAAATAAAAACA+GGG | - | chr5.1:1243452-1243471 | MS.gene49471:intron | 25.0% |
| ! | TAAGTAAAGTTATAGCTACT+TGG | - | chr5.1:1244760-1244779 | MS.gene49471:CDS | 25.0% |
| ! | TTGTTGATGTGGATAATTTA+TGG | - | chr5.1:1242961-1242980 | MS.gene49471:intron | 25.0% |
| !! | AAAGAGATGATTTTGCAAAA+TGG | + | chr5.1:1243909-1243928 | None:intergenic | 25.0% |
| !! | AAGATCTTATGATAACGTAT+AGG | - | chr5.1:1243718-1243737 | MS.gene49471:intron | 25.0% |
| !! | AGGAAGTATGTATTCTTTAA+AGG | - | chr5.1:1243032-1243051 | MS.gene49471:intron | 25.0% |
| !! | ATAAATACTTTGGTTTAAGC+AGG | + | chr5.1:1243478-1243497 | None:intergenic | 25.0% |
| !! | CATGACAATGTAATGTTTTA+TGG | + | chr5.1:1243581-1243600 | None:intergenic | 25.0% |
| !! | TCTCAATGCGATAATATTTT+TGG | + | chr5.1:1243800-1243819 | None:intergenic | 25.0% |
| !!! | AAAGTTGGTTTTCAAAAAGA+GGG | - | chr5.1:1243002-1243021 | MS.gene49471:intron | 25.0% |
| !!! | CACATGAGGTTTATTTTAAA+AGG | - | chr5.1:1243835-1243854 | MS.gene49471:intron | 25.0% |
| AACCATGCTTGAATGTATTT+GGG | - | chr5.1:1244587-1244606 | MS.gene49471:CDS | 30.0% | |
| ACGATGATATATTTGGATCA+TGG | + | chr5.1:1243248-1243267 | None:intergenic | 30.0% | |
| AGAATCAAATGTGCAGAAAT+TGG | - | chr5.1:1242828-1242847 | MS.gene49471:intron | 30.0% | |
| ATGGTTCAATTAGATTGAAC+CGG | + | chr5.1:1243229-1243248 | None:intergenic | 30.0% | |
| ATTCAGTGAATTTCCATACT+TGG | - | chr5.1:1242923-1242942 | MS.gene49471:intron | 30.0% | |
| CAAATCAATGATCTCTTCAT+TGG | + | chr5.1:1242574-1242593 | None:intergenic | 30.0% | |
| CAATGCCTTAATTACTTGAT+AGG | + | chr5.1:1243278-1243297 | None:intergenic | 30.0% | |
| CAGTAAGGAAAATCCATATA+AGG | - | chr5.1:1243641-1243660 | MS.gene49471:intron | 30.0% | |
| GAATCAAATGTGCAGAAATT+GGG | - | chr5.1:1242829-1242848 | MS.gene49471:intron | 30.0% | |
| GATAACAAAAAATTAGTGGC+AGG | - | chr5.1:1244344-1244363 | MS.gene49471:intron | 30.0% | |
| GGACATCTTAAAGAAATAGT+TGG | - | chr5.1:1244550-1244569 | MS.gene49471:CDS | 30.0% | |
| GGCAGAATTGAAATAAAAAC+AGG | - | chr5.1:1243451-1243470 | MS.gene49471:intron | 30.0% | |
| GTTGATTGTACATCAAACAA+AGG | - | chr5.1:1243430-1243449 | MS.gene49471:intron | 30.0% | |
| TAAAATAAACCTCATGTGCA+AGG | + | chr5.1:1243833-1243852 | None:intergenic | 30.0% | |
| TATCCAATTATGAGTGCATA+TGG | - | chr5.1:1243495-1243514 | MS.gene49471:intron | 30.0% | |
| TCATTTCATGCACTAATTTG+AGG | + | chr5.1:1244030-1244049 | None:intergenic | 30.0% | |
| TGATGTACAATCAACCTATT+GGG | + | chr5.1:1243425-1243444 | None:intergenic | 30.0% | |
| TGCACTAACTACAAATTATG+TGG | - | chr5.1:1244416-1244435 | MS.gene49471:intron | 30.0% | |
| TTGATGTACAATCAACCTAT+TGG | + | chr5.1:1243426-1243445 | None:intergenic | 30.0% | |
| ! | TGCTCTGAATTATGTGTAAA+TGG | + | chr5.1:1244688-1244707 | None:intergenic | 30.0% |
| ! | TTTGAGGTTATCAATGAGAT+TGG | + | chr5.1:1244014-1244033 | None:intergenic | 30.0% |
| ! | TTTTCCTTACTGATACTTCT+TGG | + | chr5.1:1243633-1243652 | None:intergenic | 30.0% |
| !! | ATGTTCTAGGCTCTAAATAT+TGG | - | chr5.1:1242853-1242872 | MS.gene49471:intron | 30.0% |
| !! | GGCATTGATTTAGATTTACT+AGG | - | chr5.1:1243291-1243310 | MS.gene49471:intron | 30.0% |
| !! | TGTTCTAGGCTCTAAATATT+GGG | - | chr5.1:1242854-1242873 | MS.gene49471:intron | 30.0% |
| !! | TTGGGAGTTTTATATACATC+CGG | - | chr5.1:1244605-1244624 | MS.gene49471:CDS | 30.0% |
| !!! | ACTATTTTGATACCGTCTAA+TGG | + | chr5.1:1243744-1243763 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCACAGTTAACCA+TGG | - | chr5.1:1244236-1244255 | MS.gene49471:intron | 30.0% |
| !!! | GAAAGTTGGTTTTCAAAAAG+AGG | - | chr5.1:1243001-1243020 | MS.gene49471:intron | 30.0% |
| AAAATTAGTGGCAGGAATGA+TGG | - | chr5.1:1244352-1244371 | MS.gene49471:intron | 35.0% | |
| AAATGCTTCCACATGAATTG+AGG | - | chr5.1:1244296-1244315 | MS.gene49471:intron | 35.0% | |
| AACTAAGAAGAGTTCCCAAT+AGG | - | chr5.1:1243408-1243427 | MS.gene49471:intron | 35.0% | |
| AAGCCTACAAACAATGTGAA+TGG | + | chr5.1:1244842-1244861 | None:intergenic | 35.0% | |
| AATGAGCAGGTTTAATTGAG+AGG | - | chr5.1:1244467-1244486 | MS.gene49471:intron | 35.0% | |
| ACCCAATAGCATGATCATTA+TGG | + | chr5.1:1242770-1242789 | None:intergenic | 35.0% | |
| AGAACCTTCTTACATGTAGA+AGG | - | chr5.1:1244189-1244208 | MS.gene49471:intron | 35.0% | |
| AGCCTACAAACAATGTGAAT+GGG | + | chr5.1:1244841-1244860 | None:intergenic | 35.0% | |
| ATAACGTATAGGCCATTAGA+CGG | - | chr5.1:1243729-1243748 | MS.gene49471:intron | 35.0% | |
| ATAATGAGCAGGTTTACTTG+AGG | - | chr5.1:1244139-1244158 | MS.gene49471:intron | 35.0% | |
| ATGAGCAGGTTTAATTGAGA+GGG | - | chr5.1:1244468-1244487 | MS.gene49471:intron | 35.0% | |
| ATTATCGCATTGAGAAGGAT+GGG | - | chr5.1:1243805-1243824 | MS.gene49471:intron | 35.0% | |
| CAAAGAGTAGTTGAGAAAGT+TGG | - | chr5.1:1242987-1243006 | MS.gene49471:intron | 35.0% | |
| CAACCATGCTTGAATGTATT+TGG | - | chr5.1:1244586-1244605 | MS.gene49471:CDS | 35.0% | |
| CAGAGCAGAACATTAATTAC+CGG | - | chr5.1:1244701-1244720 | MS.gene49471:CDS | 35.0% | |
| GAACCTTCTTACATGTAGAA+GGG | - | chr5.1:1244190-1244209 | MS.gene49471:intron | 35.0% | |
| GCCATAATGATCATGCTATT+GGG | - | chr5.1:1242766-1242785 | MS.gene49471:intron | 35.0% | |
| GTGAATTTCCATACTTGGAA+AGG | - | chr5.1:1242928-1242947 | MS.gene49471:intron | 35.0% | |
| TAATGAGCAGGTTTACTTGA+GGG | - | chr5.1:1244140-1244159 | MS.gene49471:intron | 35.0% | |
| TATTATCGCATTGAGAAGGA+TGG | - | chr5.1:1243804-1243823 | MS.gene49471:intron | 35.0% | |
| TGCCATAATGATCATGCTAT+TGG | - | chr5.1:1242765-1242784 | MS.gene49471:intron | 35.0% | |
| TGCTGTGAAACAAATGGTTA+AGG | - | chr5.1:1242896-1242915 | MS.gene49471:intron | 35.0% | |
| TGGGAACTTTCCAATATATG+AGG | - | chr5.1:1244513-1244532 | MS.gene49471:intron | 35.0% | |
| TTCAAAAAGAGGGAGTTCTT+AGG | - | chr5.1:1243012-1243031 | MS.gene49471:intron | 35.0% | |
| TTCCCATTCACATTGTTTGT+AGG | - | chr5.1:1244836-1244855 | MS.gene49471:CDS | 35.0% | |
| ! | CATGGTTTAATTTCGCATCA+AGG | + | chr5.1:1243954-1243973 | None:intergenic | 35.0% |
| ! | GCTCTAAATATTGGGGTAAA+GGG | - | chr5.1:1242862-1242881 | MS.gene49471:intron | 35.0% |
| ! | GTTTAATTTCGCATCAAGGA+TGG | + | chr5.1:1243950-1243969 | None:intergenic | 35.0% |
| ! | TAGACAGTCTAAGGTGTAAT+TGG | + | chr5.1:1243606-1243625 | None:intergenic | 35.0% |
| !! | ATGGTTTAGTTTGTCAGCAA+GGG | + | chr5.1:1244274-1244293 | None:intergenic | 35.0% |
| !! | GTTCTAGGCTCTAAATATTG+GGG | - | chr5.1:1242855-1242874 | MS.gene49471:intron | 35.0% |
| !! | TTCTGACCTTGATGATGTAA+TGG | - | chr5.1:1242623-1242642 | MS.gene49471:CDS | 35.0% |
| !!! | TGACTGAAGTCTTTTTTGCA+CGG | + | chr5.1:1244978-1244997 | None:intergenic | 35.0% |
| AACCTGCTCATTATGACAGA+TGG | + | chr5.1:1244133-1244152 | None:intergenic | 40.0% | |
| AATGAGCAGGTTTACTTGAG+GGG | - | chr5.1:1244141-1244160 | MS.gene49471:intron | 40.0% | |
| ACTTGGTTGTGCTCTTTACT+GGG | - | chr5.1:1244777-1244796 | MS.gene49471:CDS | 40.0% | |
| AGCATGCACTACATCTTATG+TGG | - | chr5.1:1244090-1244109 | MS.gene49471:intron | 40.0% | |
| AGTCTTCTGTTACAATGAGC+AGG | - | chr5.1:1244454-1244473 | MS.gene49471:intron | 40.0% | |
| ATACATCCGGTCTAAACCAT+GGG | - | chr5.1:1244618-1244637 | MS.gene49471:CDS | 40.0% | |
| ATATGAGGTTGCTTGCAGAA+GGG | - | chr5.1:1244528-1244547 | MS.gene49471:intron | 40.0% | |
| ATCCATCTGTCATAATGAGC+AGG | - | chr5.1:1244128-1244147 | MS.gene49471:intron | 40.0% | |
| ATGAAAAGGTAGCCAAGTTC+TGG | - | chr5.1:1242661-1242680 | MS.gene49471:CDS | 40.0% | |
| ATGATCTCTTCATTGGCACA+TGG | + | chr5.1:1242567-1242586 | None:intergenic | 40.0% | |
| CATAATCCCATGGTTTAGAC+CGG | + | chr5.1:1244627-1244646 | None:intergenic | 40.0% | |
| CATTTGTTTCACAGCAAACG+TGG | + | chr5.1:1242892-1242911 | None:intergenic | 40.0% | |
| CCTTACTGATACTTCTTGGA+CGG | + | chr5.1:1243629-1243648 | None:intergenic | 40.0% | |
| CTCCCAAATACATTCAAGCA+TGG | + | chr5.1:1244592-1244611 | None:intergenic | 40.0% | |
| CTGAATTCTTCTGCTGCTAT+TGG | + | chr5.1:1243977-1243996 | None:intergenic | 40.0% | |
| CTGCAAGCAACCTCATATAT+TGG | + | chr5.1:1244526-1244545 | None:intergenic | 40.0% | |
| CTGCCATATGCACTCATAAT+TGG | + | chr5.1:1243501-1243520 | None:intergenic | 40.0% | |
| CTTGCTGACAAACTAAACCA+TGG | - | chr5.1:1244273-1244292 | MS.gene49471:intron | 40.0% | |
| GATATGGTGTACTGTAGACT+TGG | + | chr5.1:1245004-1245023 | None:intergenic | 40.0% | |
| GCAGAAATTGGGTATGTTCT+AGG | - | chr5.1:1242840-1242859 | MS.gene49471:intron | 40.0% | |
| GCTCGACTCATGTATACTAT+GGG | + | chr5.1:1244653-1244672 | None:intergenic | 40.0% | |
| GGTCAGAAAGATGAAGATGT+CGG | + | chr5.1:1242611-1242630 | None:intergenic | 40.0% | |
| TACTTGGTTGTGCTCTTTAC+TGG | - | chr5.1:1244776-1244795 | MS.gene49471:CDS | 40.0% | |
| TATACATCCGGTCTAAACCA+TGG | - | chr5.1:1244617-1244636 | MS.gene49471:CDS | 40.0% | |
| TATATGAGGTTGCTTGCAGA+AGG | - | chr5.1:1244527-1244546 | MS.gene49471:intron | 40.0% | |
| TGAAAAGGTAGCCAAGTTCT+GGG | - | chr5.1:1242662-1242681 | MS.gene49471:CDS | 40.0% | |
| TGCTCGACTCATGTATACTA+TGG | + | chr5.1:1244654-1244673 | None:intergenic | 40.0% | |
| TTCACTGAATCGATGAATGC+CGG | + | chr5.1:1244723-1244742 | None:intergenic | 40.0% | |
| ! | GCACTTTTCCTCAATTCATG+TGG | + | chr5.1:1244307-1244326 | None:intergenic | 40.0% |
| !! | ACCTTGATGATGTAATGGTG+TGG | - | chr5.1:1242628-1242647 | MS.gene49471:CDS | 40.0% |
| !! | CACGTTTGCTGTGAAACAAA+TGG | - | chr5.1:1242890-1242909 | MS.gene49471:intron | 40.0% |
| !! | CATGGTTTAGTTTGTCAGCA+AGG | + | chr5.1:1244275-1244294 | None:intergenic | 40.0% |
| !! | GCATTCATCGATTCAGTGAA+TGG | - | chr5.1:1244723-1244742 | MS.gene49471:CDS | 40.0% |
| !! | GGCTCTAAATATTGGGGTAA+AGG | - | chr5.1:1242861-1242880 | MS.gene49471:intron | 40.0% |
| !! | TTCATGTGGAAGCATTTCCA+TGG | + | chr5.1:1244293-1244312 | None:intergenic | 40.0% |
| ATGGTGTACTGTAGACTTGG+AGG | + | chr5.1:1245001-1245020 | None:intergenic | 45.0% | |
| ATGTAAGAAGGTTCTCACCC+TGG | + | chr5.1:1244184-1244203 | None:intergenic | 45.0% | |
| ATTTGTGCGCGTAGGTGATA+TGG | + | chr5.1:1245020-1245039 | None:intergenic | 45.0% | |
| CAACCTTACAAACACACCCA+GGG | - | chr5.1:1244164-1244183 | MS.gene49471:intron | 45.0% | |
| CCTTACACTAGCAAAGACGA+AGG | - | chr5.1:1242690-1242709 | MS.gene49471:CDS | 45.0% | |
| CCTTCGTCTTTGCTAGTGTA+AGG | + | chr5.1:1242693-1242712 | None:intergenic | 45.0% | |
| CGGTCTAAACCATGGGATTA+TGG | - | chr5.1:1244625-1244644 | MS.gene49471:CDS | 45.0% | |
| CTACACAAATGAGGCACACT+TGG | - | chr5.1:1243524-1243543 | MS.gene49471:intron | 45.0% | |
| CTCTTCATTGGCACATGGTT+TGG | + | chr5.1:1242562-1242581 | None:intergenic | 45.0% | |
| GAAAAGGTAGCCAAGTTCTG+GGG | - | chr5.1:1242663-1242682 | MS.gene49471:CDS | 45.0% | |
| GAACCTTAGAAACCACCTCA+GGG | - | chr5.1:1244490-1244509 | MS.gene49471:intron | 45.0% | |
| GAAGATGTCGGAGTGTGATT+TGG | + | chr5.1:1242599-1242618 | None:intergenic | 45.0% | |
| GATATGCCTCACAGCAAGAA+CGG | - | chr5.1:1244892-1244911 | MS.gene49471:CDS | 45.0% | |
| GCCACACCATTACATCATCA+AGG | + | chr5.1:1242632-1242651 | None:intergenic | 45.0% | |
| GCTTCAAGCCTTTCCAAGTA+TGG | + | chr5.1:1242939-1242958 | None:intergenic | 45.0% | |
| GCTTGAAGCTCTTGTTGATG+TGG | - | chr5.1:1242950-1242969 | MS.gene49471:intron | 45.0% | |
| GTGCCCTTCTACATGTAAGA+AGG | + | chr5.1:1244196-1244215 | None:intergenic | 45.0% | |
| TATGAGGTTGCTTGCAGAAG+GGG | - | chr5.1:1244529-1244548 | MS.gene49471:intron | 45.0% | |
| TGGCAGCTTCTACACAAATG+AGG | - | chr5.1:1243515-1243534 | MS.gene49471:intron | 45.0% | |
| TGTAAGAAGGTTCTCACCCT+GGG | + | chr5.1:1244183-1244202 | None:intergenic | 45.0% | |
| TTCTTCTGCTGCTATTGGCA+TGG | + | chr5.1:1243972-1243991 | None:intergenic | 45.0% | |
| TTGTAGGCTTAAGAAACGCC+CGG | - | chr5.1:1244852-1244871 | MS.gene49471:CDS | 45.0% | |
| ! | AAAAGGTAGCCAAGTTCTGG+GGG | - | chr5.1:1242664-1242683 | MS.gene49471:CDS | 45.0% |
| ! | TCTTTACTGGGCATTGCATG+AGG | - | chr5.1:1244789-1244808 | MS.gene49471:CDS | 45.0% |
| ! | TTTTTGCACGGCGTGGAATT+TGG | + | chr5.1:1244966-1244985 | None:intergenic | 45.0% |
| !! | CCGTCCAAGAAGTATCAGTA+AGG | - | chr5.1:1243626-1243645 | MS.gene49471:intron | 45.0% |
| !! | GTTTAGTTTGTCAGCAAGGG+CGG | + | chr5.1:1244271-1244290 | None:intergenic | 45.0% |
| !!! | TTACTTTTTTATTAATTTAT+TGG | - | chr5.1:1243199-1243218 | MS.gene49471:intron | 5.0% |
| ATTGGAAAGTTCCCACCCTG+AGG | + | chr5.1:1244508-1244527 | None:intergenic | 50.0% | |
| CTTAGAAACCACCTCAGGGT+GGG | - | chr5.1:1244494-1244513 | MS.gene49471:intron | 50.0% | |
| CTTGGACGGTAGACAGTCTA+AGG | + | chr5.1:1243615-1243634 | None:intergenic | 50.0% | |
| GCAACCTTACAAACACACCC+AGG | - | chr5.1:1244163-1244182 | MS.gene49471:intron | 50.0% | |
| GCATGAGGTAATCGTCAAGC+TGG | - | chr5.1:1244804-1244823 | MS.gene49471:CDS | 50.0% | |
| GGAACCTTAGAAACCACCTC+AGG | - | chr5.1:1244489-1244508 | MS.gene49471:intron | 50.0% | |
| GTGGCAGCAGACTGATGAAA+AGG | - | chr5.1:1242647-1242666 | MS.gene49471:CDS | 50.0% | |
| TCACCCTGGGTGTGTTTGTA+AGG | + | chr5.1:1244170-1244189 | None:intergenic | 50.0% | |
| ! | ACATCACCGTTCTTGCTGTG+AGG | + | chr5.1:1244901-1244920 | None:intergenic | 50.0% |
| ! | CTATGGGTGCCATAATCCCA+TGG | + | chr5.1:1244637-1244656 | None:intergenic | 50.0% |
| ! | GCTTGCTGCTGAACAGGAAA+CGG | + | chr5.1:1244924-1244943 | None:intergenic | 50.0% |
| !! | AAAGGTAGCCAAGTTCTGGG+GGG | - | chr5.1:1242665-1242684 | MS.gene49471:CDS | 50.0% |
| !! | TGTGAAGCTTGCTGCTGAAC+AGG | + | chr5.1:1244930-1244949 | None:intergenic | 50.0% |
| !!! | GAAGTCTTTTTTGCACGGCG+TGG | + | chr5.1:1244973-1244992 | None:intergenic | 50.0% |
| AACGCCCGGTGAATACACTG+CGG | - | chr5.1:1244866-1244885 | MS.gene49471:CDS | 55.0% | |
| ACGTTGACCAGTGCGAAGCA+CGG | + | chr5.1:1243325-1243344 | None:intergenic | 55.0% | |
| CCACCCTGAGGTGGTTTCTA+AGG | + | chr5.1:1244496-1244515 | None:intergenic | 55.0% | |
| CCTTAGAAACCACCTCAGGG+TGG | - | chr5.1:1244493-1244512 | MS.gene49471:intron | 55.0% | |
| GTAAGGTTCCCCCCAGAACT+TGG | + | chr5.1:1242676-1242695 | None:intergenic | 55.0% | |
| TCCCTCCGCAGTGTATTCAC+CGG | + | chr5.1:1244874-1244893 | None:intergenic | 55.0% | |
| ! | GGATGGGTTCCTTGCACATG+AGG | - | chr5.1:1243821-1243840 | MS.gene49471:intron | 55.0% |
| !! | ACGGCGTGGAATTTGGCTCT+CGG | + | chr5.1:1244959-1244978 | None:intergenic | 55.0% |
| CCCGGTGAATACACTGCGGA+GGG | - | chr5.1:1244870-1244889 | MS.gene49471:CDS | 60.0% | |
| CCCTCCGCAGTGTATTCACC+GGG | + | chr5.1:1244873-1244892 | None:intergenic | 60.0% | |
| CGTTGACCAGTGCGAAGCAC+GGG | + | chr5.1:1243324-1243343 | None:intergenic | 60.0% | |
| GGAAAGTTCCCACCCTGAGG+TGG | + | chr5.1:1244505-1244524 | None:intergenic | 60.0% | |
| AAGGGCGGTGCATGCTGCCA+TGG | + | chr5.1:1244256-1244275 | None:intergenic | 65.0% | |
| GCCCGGTGAATACACTGCGG+AGG | - | chr5.1:1244869-1244888 | MS.gene49471:CDS | 65.0% | |
| CGCGAACCCGTGCTTCGCAC+TGG | - | chr5.1:1243315-1243334 | MS.gene49471:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1242537 | 1245041 | 1242537 | ID=MS.gene49471 |
| chr5.1 | mRNA | 1242537 | 1245041 | 1242537 | ID=MS.gene49471.t1;Parent=MS.gene49471 |
| chr5.1 | exon | 1244542 | 1245041 | 1244542 | ID=MS.gene49471.t1.exon1;Parent=MS.gene49471.t1 |
| chr5.1 | CDS | 1244542 | 1245041 | 1244542 | ID=cds.MS.gene49471.t1;Parent=MS.gene49471.t1 |
| chr5.1 | exon | 1242537 | 1242720 | 1242537 | ID=MS.gene49471.t1.exon2;Parent=MS.gene49471.t1 |
| chr5.1 | CDS | 1242537 | 1242720 | 1242537 | ID=cds.MS.gene49471.t1;Parent=MS.gene49471.t1 |
| Gene Sequence |
| Protein sequence |
