AlfalfaGEDB | MS.gene49468

M. sativa cultivar XinJiangDaYe / MS.gene49468

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF13302.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49468.t1	XP_024639963.1	92.6	190	14	0	1	190	1	190	2.30E-95	358.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49468.t1	P05332	31.8	173	107	3	21	187	8	175	4.1e-16	86.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49468.t1	G7K3P8	92.6	190	14	0	1	190	1719	1908	1.7e-95	358.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene49468.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049567	MS.gene49468	0.820066	8.35E-53	-1.69E-46
MS.gene049669	MS.gene49468	0.809064	2.28E-50	-1.69E-46
MS.gene050780	MS.gene49468	0.841622	4.25E-58	-1.69E-46
MS.gene051492	MS.gene49468	0.851552	8.24E-61	-1.69E-46
MS.gene051744	MS.gene49468	0.835231	1.89E-56	-1.69E-46
MS.gene052586	MS.gene49468	0.80425	2.36E-49	-1.69E-46
MS.gene052867	MS.gene49468	0.808915	2.45E-50	-1.69E-46
MS.gene053094	MS.gene49468	0.81604	6.79E-52	-1.69E-46
MS.gene053641	MS.gene49468	0.815404	9.41E-52	-1.69E-46
MS.gene053643	MS.gene49468	0.824109	9.65E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene001033	MS.gene49468	PPI
MS.gene001038	MS.gene49468	PPI
MS.gene006418	MS.gene49468	PPI
MS.gene024854	MS.gene49468	PPI
MS.gene024855	MS.gene49468	PPI
MS.gene024858	MS.gene49468	PPI
MS.gene043815	MS.gene49468	PPI
MS.gene21830	MS.gene49468	PPI
MS.gene21833	MS.gene49468	PPI
MS.gene29937	MS.gene49468	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49468.t1	MTR_5g006520	92.632	190	14	0	1	190	1719	1908	1.55e-121	378
MS.gene49468.t1	MTR_5g006450	78.421	190	41	0	1	190	1	190	1.49e-107	306
MS.gene49468.t1	MTR_5g006470	75.789	190	44	1	1	190	1	188	3.98e-103	295
MS.gene49468.t1	MTR_5g006460	70.256	195	51	5	1	190	1	193	7.91e-91	264
MS.gene49468.t1	MTR_5g006510	67.539	191	55	3	1	190	7	191	4.71e-87	254
MS.gene49468.t1	MTR_1g103110	61.458	192	70	2	1	190	1	190	5.91e-83	244
MS.gene49468.t1	MTR_1g103150	59.375	192	74	2	1	190	1	190	6.23e-80	236
MS.gene49468.t1	MTR_7g114410	42.105	171	96	1	17	187	4	171	2.76e-47	153
MS.gene49468.t1	MTR_3g463610	38.953	172	105	0	16	187	2	173	9.44e-45	147
MS.gene49468.t1	MTR_7g114410	41.667	156	88	1	17	172	4	156	3.30e-42	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49468.t1	AT2G32030	51.190	168	75	3	21	187	24	185	2.45e-58	181
MS.gene49468.t1	AT2G32020	46.561	189	84	4	2	187	6	180	3.15e-54	171
MS.gene49468.t1	AT3G22560	40.237	169	96	2	21	187	7	172	3.01e-37	127

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Find 38 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGGTTTCCAGAAGGA+AGG	0.623258	5.1:-1264149	MS.gene49468:CDS
AACTTGTTTCACAACATACG+TGG	0.623050	5.1:+1264262	None:intergenic
AAGTGGCCAAGTTCTGCTCT+TGG	0.474319	5.1:-1264487	MS.gene49468:CDS
ACAGAACTTGCCTATGTTCT+AGG	0.250597	5.1:-1264311	MS.gene49468:CDS
ACCTTGATGAGCTCCTGGTA+TGG	0.539184	5.1:-1264523	MS.gene49468:CDS
AGGAAGTATTTGTTCATGAA+AGG	0.475944	5.1:-1264119	MS.gene49468:CDS
AGTGGCCAAGTTCTGCTCTT+GGG	0.462852	5.1:-1264486	MS.gene49468:CDS
ATATACCAAACAAATTTCTA+TGG	0.388477	5.1:-1264421	MS.gene49468:CDS
ATATTTAGATCCTAGAACAT+AGG	0.519203	5.1:+1264301	None:intergenic
ATCTTGATTTCAGAGAAACA+CGG	0.706701	5.1:+1264363	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTTGATTTCAGAGAAACA+CGG	+	chr5.1:1264318-1264337	None:intergenic	30.0%
GGATCTAAATATTGGGGTAA+AGG	-	chr5.1:1264388-1264407	MS.gene49468:CDS	35.0%
TCAAGGTCAGAAAGATGAAA+AGG	+	chr5.1:1264142-1264161	None:intergenic	35.0%
TGTTGTGAAACAAGTTGTCA+AGG	-	chr5.1:1264423-1264442	MS.gene49468:CDS	35.0%
ACAGAACTTGCCTATGTTCT+AGG	-	chr5.1:1264367-1264386	MS.gene49468:CDS	40.0%
ATGGAGAGCTGATGAAAAAG+TGG	-	chr5.1:1264174-1264193	MS.gene49468:CDS	40.0%
GATCACCTCATGATAAAAGC+AGG	-	chr5.1:1264335-1264354	MS.gene49468:CDS	40.0%
GGTCAGAAAGATGAAAAGGT+CGG	+	chr5.1:1264138-1264157	None:intergenic	40.0%
TCCAGAAGGAAGGAATTCTT+AGG	-	chr5.1:1264539-1264558	MS.gene49468:CDS	40.0%
TCCTAAGAATTCCTTCCTTC+TGG	+	chr5.1:1264543-1264562	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	1264064	1264636	1264064	ID=MS.gene49468
chr5.1	mRNA	1264064	1264636	1264064	ID=MS.gene49468.t1;Parent=MS.gene49468
chr5.1	exon	1264064	1264636	1264064	ID=MS.gene49468.t1.exon1;Parent=MS.gene49468.t1
chr5.1	CDS	1264064	1264636	1264064	ID=cds.MS.gene49468.t1;Parent=MS.gene49468.t1

Gene Sequence

>MS.gene49468

ATGGAGGAAACTTTTATTTCTTCCAAACCAGGTGGCAATGAAAAGAGCATTGATTTGAACCAAATCGCACTCCGACCTTTTCATCTTTCTGACCTTGATGAGCTCCTGGTATGGAGAGCTGATGAAAAAGTGGCCAAGTTCTGCTCTTGGGAACCATACACCAGCAAAGAACAAGGCATCAACTTCATTGAAAATATACCAAACAAATTTCTATGGTGCAAAGCAATATGCCTTAATGATCGTGCTATTGGCCGTGTTTCTCTGAAATCAAGATCACCTCATGATAAAAGCAGGAACAAAACTACAGAACTTGCCTATGTTCTAGGATCTAAATATTGGGGTAAAGGAATTGCCACGTATGTTGTGAAACAAGTTGTCAAGGTTGCATTCAGTGAGTTGTCACACTTAGAAAGAGTTGAAGCTTTTGTTGATGTTGAAAATGTTGGGTCTCAAAGAGTGTTGGAGAAAGCTGGTTTCCAGAAGGAAGGAATTCTTAGGAAGTATTTGTTCATGAAAGGAAAAAGTAGAGATATGATCATATTCAGTGTTCTTTCTAATGATCTCCAACTATGA

Protein sequence

>MS.gene49468.t1

MEETFISSKPGGNEKSIDLNQIALRPFHLSDLDELLVWRADEKVAKFCSWEPYTSKEQGINFIENIPNKFLWCKAICLNDRAIGRVSLKSRSPHDKSRNKTTELAYVLGSKYWGKGIATYVVKQVVKVAFSELSHLERVEAFVDVENVGSQRVLEKAGFQKEGILRKYLFMKGKSRDMIIFSVLSNDLQL