AlfalfaGEDB | MS.gene024859

M. sativa cultivar XinJiangDaYe / MS.gene024859

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF13302.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024859.t1	XP_003610737.1	93.7	190	12	0	1	190	1	190	1.30E-93	352.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024859.t1	P05332	31.8	179	111	3	15	187	2	175	8.6e-14	78.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024859.t1	G7K3P2	93.7	190	12	0	1	190	1	190	9.2e-94	352.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene024859.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene001033	MS.gene024859	PPI
MS.gene001038	MS.gene024859	PPI
MS.gene006418	MS.gene024859	PPI
MS.gene024854	MS.gene024859	PPI
MS.gene024855	MS.gene024859	PPI
MS.gene024858	MS.gene024859	PPI
MS.gene024859	MS.gene050493	PPI
MS.gene024859	MS.gene001034	PPI
MS.gene024859	MS.gene070945	PPI
MS.gene024859	MS.gene22888	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024859.t1	MTR_5g006450	93.684	190	12	0	1	190	1	190	3.14e-129	361
MS.gene024859.t1	MTR_5g006470	76.842	190	42	1	1	190	1	188	1.11e-101	291
MS.gene024859.t1	MTR_5g006520	77.895	190	42	0	1	190	1719	1908	7.35e-98	310
MS.gene024859.t1	MTR_5g006520	52.000	75	13	1	97	171	1655	1706	2.64e-12	65.1
MS.gene024859.t1	MTR_5g006510	73.298	191	44	3	1	190	7	191	1.05e-94	273
MS.gene024859.t1	MTR_5g006460	73.333	195	45	5	1	190	1	193	1.77e-93	270
MS.gene024859.t1	MTR_1g103110	64.583	192	64	2	1	190	1	190	2.20e-85	250
MS.gene024859.t1	MTR_1g103150	60.417	192	72	2	1	190	1	190	2.37e-79	234
MS.gene024859.t1	MTR_7g114410	41.279	172	98	1	16	187	3	171	1.35e-45	148
MS.gene024859.t1	MTR_3g463610	39.766	171	103	0	17	187	3	173	1.64e-44	147

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024859.t1	AT2G32030	51.786	168	74	3	21	187	24	185	1.60e-58	182
MS.gene024859.t1	AT2G32020	51.190	168	75	2	21	187	19	180	2.37e-54	171
MS.gene024859.t1	AT3G22560	38.235	170	100	2	20	187	6	172	2.44e-35	122

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Find 49 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGGTTTCCAAAAGGA+GGG	0.657724	5.3:-1572634	MS.gene024859:CDS
AACTTGTTTCACAACACATG+TGG	0.607173	5.3:+1572747	None:intergenic
AAGGGCTCGAAGTGTGATTT+GGG	0.403990	5.3:+1573041	None:intergenic
AAGTGGCCAAATTCTGCTCT+TGG	0.423997	5.3:-1572972	MS.gene024859:CDS
AAGTTCTGCACATTTGTTCC+TGG	0.375848	5.3:+1572810	None:intergenic
ACCTTGATGATCTCATGGTG+TGG	0.606125	5.3:-1573008	MS.gene024859:CDS
AGGAAATATTTGTTCATGAA+AGG	0.480337	5.3:-1572604	MS.gene024859:CDS
AGGAACAAATGTGCAGAACT+TGG	0.475881	5.3:-1572808	MS.gene024859:CDS
AGTGGCCAAATTCTGCTCTT+GGG	0.474265	5.3:-1572971	MS.gene024859:CDS
ATATAGCTACCAAGTTTCTA+TGG	0.402105	5.3:-1572906	MS.gene024859:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATAGCTACCAAGTTTCTA+TGG	-	chr5.3:1572742-1572761	MS.gene024859:CDS	30.0%
TGTTGTGAAACAAGTTGTTA+AGG	-	chr5.3:1572908-1572927	MS.gene024859:CDS	30.0%
ATCAAGGTCAGAAAGTTGAA+GGG	+	chr5.3:1572628-1572647	None:intergenic	35.0%
CTCTAAATATTGGGGTAAAG+GGG	-	chr5.3:1572875-1572894	MS.gene024859:CDS	35.0%
AAGTTCTGCACATTTGTTCC+TGG	+	chr5.3:1572841-1572860	None:intergenic	40.0%
AGGAACAAATGTGCAGAACT+TGG	-	chr5.3:1572840-1572859	MS.gene024859:CDS	40.0%
CATCAAGGTCAGAAAGTTGA+AGG	+	chr5.3:1572629-1572648	None:intergenic	40.0%
GAGATCAGTAGAAAGAACAC+TGG	+	chr5.3:1573093-1573112	None:intergenic	40.0%
GCATCAATGATCGTGCAATT+GGG	-	chr5.3:1572778-1572797	MS.gene024859:CDS	40.0%
GTGGACAACTGATGAAAAAG+TGG	-	chr5.3:1572659-1572678	MS.gene024859:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	1572549	1573121	1572549	ID=MS.gene024859
chr5.3	mRNA	1572549	1573121	1572549	ID=MS.gene024859.t1;Parent=MS.gene024859
chr5.3	exon	1572549	1573121	1572549	ID=MS.gene024859.t1.exon1;Parent=MS.gene024859.t1
chr5.3	CDS	1572549	1573121	1572549	ID=cds.MS.gene024859.t1;Parent=MS.gene024859.t1

Gene Sequence

>MS.gene024859

ATGGAGAGAACTTCTATTTCTTTCGAACCACGTGCCAAAGAAGAGAGAATTGATTTAACCCAAATCACACTTCGAGCCCTTCAACTTTCTGACCTTGATGATCTCATGGTGTGGACAACTGATGAAAAAGTGGCCAAATTCTGCTCTTGGGAACTCTACACCAGCAAGGATGATGGCATCAACTTCATTGAAAATATAGCTACCAAGTTTCTATGGTGCAAAGCAATATGCATCAATGATCGTGCAATTGGGTGTGTTTCTCTATCCTCAAGTTCACCTGGTGATAAATCCAGGAACAAATGTGCAGAACTTGGCTATGTTCTAGGCTCTAAATATTGGGGTAAAGGGGTTGCCACATGTGTTGTGAAACAAGTTGTTAAGGTTGCATTCTGTGAGTTGACTTACTTGGAAAGGCTTGAAGCTTTAGTTGATGTGGAAAATGCTGGGTCTCAAAGAGTGCTGGAGAAAGCTGGTTTCCAAAAGGAGGGAGTTCTAAGGAAATATTTGTTCATGAAAGGAAAAAGTAGAGATATGATCATGTCCAGTGTTCTTTCTACTGATCTCCAACTATAA

Protein sequence

>MS.gene024859.t1

MERTSISFEPRAKEERIDLTQITLRALQLSDLDDLMVWTTDEKVAKFCSWELYTSKDDGINFIENIATKFLWCKAICINDRAIGCVSLSSSSPGDKSRNKCAELGYVLGSKYWGKGVATCVVKQVVKVAFCELTYLERLEALVDVENAGSQRVLEKAGFQKEGVLRKYLFMKGKSRDMIMSSVLSTDLQL