AlfalfaGEDB | MS.gene043813

M. sativa cultivar XinJiangDaYe / MS.gene043813

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF13302.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043813.t1	XP_003610737.1	84.5	174	26	1	1	173	1	174	4.20E-75	290.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043813.t1	G7K3P2	84.5	174	26	1	1	173	1	174	3.0e-75	290.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene043813.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene001033	MS.gene043813	PPI
MS.gene001037	MS.gene043813	PPI
MS.gene001038	MS.gene043813	PPI
MS.gene006417	MS.gene043813	PPI
MS.gene006418	MS.gene043813	PPI
MS.gene024612	MS.gene043813	PPI
MS.gene024854	MS.gene043813	PPI
MS.gene024855	MS.gene043813	PPI
MS.gene024858	MS.gene043813	PPI
MS.gene024859	MS.gene043813	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043813.t1	MTR_5g006450	84.483	174	26	1	1	173	1	174	5.64e-103	294
MS.gene043813.t1	MTR_5g006470	68.966	174	51	2	1	173	1	172	7.15e-76	225
MS.gene043813.t1	MTR_5g006520	71.951	164	45	1	1	163	1719	1882	5.37e-74	241
MS.gene043813.t1	MTR_5g006510	68.293	164	44	4	1	162	7	164	2.79e-68	206
MS.gene043813.t1	MTR_5g006460	68.452	168	45	6	1	162	1	166	2.66e-66	201
MS.gene043813.t1	MTR_1g103110	59.394	165	62	3	1	162	1	163	1.33e-60	186
MS.gene043813.t1	MTR_1g103150	56.970	165	66	3	1	162	1	163	2.35e-57	178
MS.gene043813.t1	MTR_7g114410	35.294	136	85	1	16	151	3	135	3.19e-27	100
MS.gene043813.t1	MTR_7g114410	35.294	136	85	1	16	151	3	135	7.15e-27	100
MS.gene043813.t1	MTR_3g463610	33.813	139	92	0	17	155	3	141	1.42e-26	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043813.t1	AT2G32030	46.104	154	68	4	3	155	14	153	1.22e-39	133
MS.gene043813.t1	AT2G32020	47.794	136	64	2	21	155	19	148	6.21e-36	123
MS.gene043813.t1	AT3G22560	33.793	145	90	3	21	162	7	148	1.14e-20	84.3

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Find 42 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGGGTCGGAGTGTGATTT+GGG	0.320072	2.2:+27862202	None:intergenic
AAGTTGCCAAGTTCTGCTTT+TGG	0.388707	2.2:-27862133	MS.gene043813:CDS
AATGTTGGGTCTCAGAGTTT+TGG	0.354229	2.2:-27861822	MS.gene043813:CDS
ACCTTGATGATCTCATGGTA+TGG	0.538119	2.2:-27862169	MS.gene043813:CDS
AGGAAATATTTGTTCATGAA+CGG	0.507359	2.2:-27861767	MS.gene043813:CDS
AGGAACGAATGTGCAGAACT+TGG	0.523520	2.2:-27861969	MS.gene043813:CDS
ATATAGCTTCAAAGTTTCTA+TGG	0.332117	2.2:-27862067	MS.gene043813:CDS
ATCAAGGTCAGAAAGATTAA+GGG	0.492658	2.2:+27862184	None:intergenic
ATGTTCTAGGCTCTAAATAT+TGG	0.292142	2.2:-27861944	MS.gene043813:CDS
ATTCTCTCTTCTTTGTCACG+TGG	0.580393	2.2:+27862233	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAAGGTCAGAAAGATTAA+GGG	+	chr2.2:27861837-27861856	None:intergenic	30.0%
ATTCTGTGAGTTGTCTTACT+TGG	-	chr2.2:27862144-27862163	MS.gene043813:CDS	35.0%
CATCAAGGTCAGAAAGATTA+AGG	+	chr2.2:27861838-27861857	None:intergenic	35.0%
CTCTAAATATTGGGGTAAAG+GGG	-	chr2.2:27862084-27862103	MS.gene043813:CDS	35.0%
TCAAGGTCAGAAAGATTAAG+GGG	+	chr2.2:27861836-27861855	None:intergenic	35.0%
TGTTGTGAAACAAGTGGTTA+AGG	-	chr2.2:27862117-27862136	MS.gene043813:CDS	35.0%
ATTCTCTCTTCTTTGTCACG+TGG	+	chr2.2:27861788-27861807	None:intergenic	40.0%
CCATCAATGATCGTGCAATT+GGG	-	chr2.2:27861987-27862006	MS.gene043813:CDS	40.0%
GTGAGTTGTCTTACTTGGAA+AGG	-	chr2.2:27862149-27862168	MS.gene043813:CDS	40.0%
GTTCACCTGGTGATAAATCA+AGG	-	chr2.2:27862029-27862048	MS.gene043813:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	27861758	27862282	27861758	ID=MS.gene043813
chr2.2	mRNA	27861758	27862282	27861758	ID=MS.gene043813.t1;Parent=MS.gene043813
chr2.2	exon	27861758	27862282	27861758	ID=MS.gene043813.t1.exon1;Parent=MS.gene043813.t1
chr2.2	CDS	27861758	27862282	27861758	ID=cds.MS.gene043813.t1;Parent=MS.gene043813.t1

Gene Sequence

>MS.gene043813

ATGGAGATAACTTCTATTTCTTCCAAACCACGTGACAAAGAAGAGAGAATTGATCTAACCCAAATCACACTCCGACCCCTTAATCTTTCTGACCTTGATGATCTCATGGTATGGACAACTGATGAAAAAGTTGCCAAGTTCTGCTTTTGGGAACTCTACACCAGCAAGGATGATGGCATCAACTTCATTGAAAATATAGCTTCAAAGTTTCTATGGTGCAAAGCAATGTCCATCAATGATCGTGCAATTGGGTGTGTTTCTCTATCCTCAAGTTCACCTGGTGATAAATCAAGGAACGAATGTGCAGAACTTGGCTATGTTCTAGGCTCTAAATATTGGGGTAAAGGGGTTGCCACGTGTGTTGTGAAACAAGTGGTTAAGGCTGCATTCTGTGAGTTGTCTTACTTGGAAAGGCTTGAAGCTTTAGTTGATGTGGAAAATGTTGGGTCTCAGAGTTTTGGAGAAAGCTGGTTTCCAAAAAGAGGGAGTTCTAAGGAAATATTTGTTCATGAACGGAAAAAGTAG

Protein sequence

>MS.gene043813.t1

MEITSISSKPRDKEERIDLTQITLRPLNLSDLDDLMVWTTDEKVAKFCFWELYTSKDDGINFIENIASKFLWCKAMSINDRAIGCVSLSSSSPGDKSRNECAELGYVLGSKYWGKGVATCVVKQVVKAAFCELSYLERLEALVDVENVGSQSFGESWFPKRGSSKEIFVHERKK