Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62594.t1 | XP_003622266.1 | 90.3 | 195 | 12 | 2 | 44 | 232 | 156 | 349 | 7.40E-91 | 343.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62594.t1 | Q9LU68 | 41.8 | 122 | 36 | 3 | 111 | 232 | 337 | 423 | 1.2e-12 | 75.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62594.t1 | G7L5C3 | 90.3 | 195 | 12 | 2 | 44 | 232 | 156 | 349 | 5.3e-91 | 343.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene62594.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene62594 | 0.830109 | 3.53E-55 | -1.69E-46 |
| MS.gene049151 | MS.gene62594 | 0.811577 | 6.53E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene62594 | 0.82393 | 1.06E-53 | -1.69E-46 |
| MS.gene049260 | MS.gene62594 | 0.875777 | 2.36E-68 | -1.69E-46 |
| MS.gene049297 | MS.gene62594 | 0.815944 | 7.13E-52 | -1.69E-46 |
| MS.gene049346 | MS.gene62594 | 0.805089 | 1.58E-49 | -1.69E-46 |
| MS.gene049599 | MS.gene62594 | -0.802112 | 6.55E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene62594 | 0.832968 | 6.98E-56 | -1.69E-46 |
| MS.gene050020 | MS.gene62594 | 0.818851 | 1.58E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene62594 | 0.83577 | 1.38E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene62594 | 0.834272 | 3.30E-56 | -1.69E-46 |
| MS.gene050330 | MS.gene62594 | -0.817262 | 3.61E-52 | -1.69E-46 |
| MS.gene050438 | MS.gene62594 | 0.804619 | 1.98E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene62594 | 0.836731 | 7.88E-57 | -1.69E-46 |
| MS.gene050586 | MS.gene62594 | 0.8288 | 7.35E-55 | -1.69E-46 |
| MS.gene050787 | MS.gene62594 | 0.801688 | 8.00E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene62594 | 0.808413 | 3.13E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene62594 | 0.813706 | 2.23E-51 | -1.69E-46 |
| MS.gene051487 | MS.gene62594 | 0.806315 | 8.73E-50 | -1.69E-46 |
| MS.gene051626 | MS.gene62594 | 0.83069 | 2.55E-55 | -1.69E-46 |
| MS.gene051663 | MS.gene62594 | 0.822672 | 2.09E-53 | -1.69E-46 |
| MS.gene051789 | MS.gene62594 | 0.865255 | 6.74E-65 | -1.69E-46 |
| MS.gene051860 | MS.gene62594 | 0.865571 | 5.36E-65 | -1.69E-46 |
| MS.gene052178 | MS.gene62594 | 0.864584 | 1.09E-64 | -1.69E-46 |
| MS.gene052207 | MS.gene62594 | 0.823857 | 1.10E-53 | -1.69E-46 |
| MS.gene052255 | MS.gene62594 | 0.806077 | 9.80E-50 | -1.69E-46 |
| MS.gene052287 | MS.gene62594 | 0.819152 | 1.35E-52 | -1.69E-46 |
| MS.gene052917 | MS.gene62594 | -0.817194 | 3.74E-52 | -1.69E-46 |
| MS.gene052967 | MS.gene62594 | 0.803042 | 4.21E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene62594 | 0.864906 | 8.68E-65 | -1.69E-46 |
| MS.gene053204 | MS.gene62594 | 0.84282 | 2.05E-58 | -1.69E-46 |
| MS.gene053557 | MS.gene62594 | 0.805009 | 1.64E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene62594 | 0.81394 | 1.98E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene62594 | 0.861053 | 1.34E-63 | -1.69E-46 |
| MS.gene054010 | MS.gene62594 | 0.819433 | 1.16E-52 | -1.69E-46 |
| MS.gene054011 | MS.gene62594 | 0.846613 | 1.95E-59 | -1.69E-46 |
| MS.gene054012 | MS.gene62594 | 0.845398 | 4.16E-59 | -1.69E-46 |
| MS.gene054013 | MS.gene62594 | 0.843645 | 1.23E-58 | -1.69E-46 |
| MS.gene054184 | MS.gene62594 | 0.858679 | 6.98E-63 | -1.69E-46 |
| MS.gene054185 | MS.gene62594 | 0.859156 | 5.03E-63 | -1.69E-46 |
| MS.gene054214 | MS.gene62594 | 0.84561 | 3.65E-59 | -1.69E-46 |
| MS.gene054379 | MS.gene62594 | 0.806264 | 8.95E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene62594 | 0.832395 | 9.69E-56 | -1.69E-46 |
| MS.gene054542 | MS.gene62594 | 0.827741 | 1.32E-54 | -1.69E-46 |
| MS.gene05456 | MS.gene62594 | 0.806484 | 8.04E-50 | -1.69E-46 |
| MS.gene054596 | MS.gene62594 | 0.844918 | 5.61E-59 | -1.69E-46 |
| MS.gene054618 | MS.gene62594 | 0.819665 | 1.03E-52 | -1.69E-46 |
| MS.gene054667 | MS.gene62594 | 0.801198 | 1.01E-48 | -1.69E-46 |
| MS.gene055277 | MS.gene62594 | 0.815447 | 9.20E-52 | -1.69E-46 |
| MS.gene055303 | MS.gene62594 | 0.815612 | 8.46E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene62594 | 0.815636 | 8.35E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene62594 | 0.833198 | 6.12E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene62594 | 0.814275 | 1.67E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene62594 | 0.835868 | 1.31E-56 | -1.69E-46 |
| MS.gene055604 | MS.gene62594 | 0.849203 | 3.76E-60 | -1.69E-46 |
| MS.gene056069 | MS.gene62594 | -0.851452 | 8.80E-61 | -1.69E-46 |
| MS.gene056191 | MS.gene62594 | 0.801388 | 9.22E-49 | -1.69E-46 |
| MS.gene056772 | MS.gene62594 | 0.826089 | 3.28E-54 | -1.69E-46 |
| MS.gene056875 | MS.gene62594 | 0.820911 | 5.34E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene62594 | 0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene057121 | MS.gene62594 | 0.80704 | 6.14E-50 | -1.69E-46 |
| MS.gene057245 | MS.gene62594 | 0.803123 | 4.05E-49 | -1.69E-46 |
| MS.gene057260 | MS.gene62594 | 0.821101 | 4.83E-53 | -1.69E-46 |
| MS.gene057439 | MS.gene62594 | 0.803374 | 3.59E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene62594 | 0.826014 | 3.42E-54 | -1.69E-46 |
| MS.gene057750 | MS.gene62594 | 0.803672 | 3.12E-49 | -1.69E-46 |
| MS.gene057752 | MS.gene62594 | 0.806084 | 9.77E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene62594 | 0.836712 | 7.97E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene62594 | 0.85033 | 1.82E-60 | -1.69E-46 |
| MS.gene058142 | MS.gene62594 | 0.802637 | 5.10E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene62594 | 0.828139 | 1.06E-54 | -1.69E-46 |
| MS.gene058236 | MS.gene62594 | 0.807894 | 4.04E-50 | -1.69E-46 |
| MS.gene058484 | MS.gene62594 | 0.812465 | 4.18E-51 | -1.69E-46 |
| MS.gene058749 | MS.gene62594 | 0.809427 | 1.90E-50 | -1.69E-46 |
| MS.gene058833 | MS.gene62594 | 0.802349 | 5.85E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene62594 | 0.844383 | 7.82E-59 | -1.69E-46 |
| MS.gene05907 | MS.gene62594 | 0.813997 | 1.93E-51 | -1.69E-46 |
| MS.gene059124 | MS.gene62594 | 0.826876 | 2.13E-54 | -1.69E-46 |
| MS.gene059128 | MS.gene62594 | 0.801114 | 1.05E-48 | -1.69E-46 |
| MS.gene059294 | MS.gene62594 | 0.809301 | 2.02E-50 | -1.69E-46 |
| MS.gene059421 | MS.gene62594 | 0.807082 | 6.01E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene62594 | 0.826362 | 2.83E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene62594 | 0.832206 | 1.08E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene62594 | 0.825386 | 4.82E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene62594 | 0.833049 | 6.67E-56 | -1.69E-46 |
| MS.gene060476 | MS.gene62594 | 0.843673 | 1.21E-58 | -1.69E-46 |
| MS.gene060559 | MS.gene62594 | 0.812251 | 4.66E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene62594 | 0.852401 | 4.73E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62594.t1 | MTR_7g032240 | 88.655 | 238 | 16 | 3 | 1 | 232 | 117 | 349 | 1.15e-140 | 398 |
| MS.gene62594.t1 | MTR_5g072780 | 36.508 | 126 | 45 | 3 | 108 | 232 | 123 | 214 | 4.36e-17 | 77.4 |
| MS.gene62594.t1 | MTR_8g104190 | 33.918 | 171 | 63 | 7 | 76 | 238 | 276 | 404 | 1.19e-16 | 78.6 |
| MS.gene62594.t1 | MTR_4g127420 | 38.793 | 116 | 42 | 3 | 114 | 229 | 293 | 379 | 3.50e-16 | 77.0 |
| MS.gene62594.t1 | MTR_1g110870 | 38.583 | 127 | 55 | 4 | 109 | 232 | 316 | 422 | 1.03e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62594.t1 | AT5G14370 | 51.648 | 182 | 59 | 9 | 56 | 232 | 177 | 334 | 2.20e-38 | 136 |
| MS.gene62594.t1 | AT5G57180 | 42.017 | 119 | 34 | 3 | 111 | 229 | 337 | 420 | 1.51e-19 | 87.0 |
| MS.gene62594.t1 | AT5G57180 | 40.984 | 122 | 37 | 3 | 111 | 232 | 337 | 423 | 2.68e-19 | 86.3 |
| MS.gene62594.t1 | AT1G73870 | 39.850 | 133 | 49 | 5 | 108 | 232 | 276 | 385 | 4.75e-18 | 82.4 |
| MS.gene62594.t1 | AT4G25990 | 40.833 | 120 | 36 | 3 | 111 | 229 | 293 | 378 | 1.35e-17 | 81.3 |
| MS.gene62594.t1 | AT4G25990 | 38.710 | 124 | 33 | 2 | 111 | 229 | 293 | 378 | 3.14e-17 | 80.5 |
| MS.gene62594.t1 | AT4G25990 | 39.837 | 123 | 39 | 3 | 111 | 232 | 293 | 381 | 3.33e-17 | 80.1 |
| MS.gene62594.t1 | AT1G25440 | 38.400 | 125 | 60 | 4 | 109 | 232 | 293 | 401 | 4.30e-16 | 77.0 |
| MS.gene62594.t1 | AT1G07050 | 39.344 | 122 | 36 | 4 | 109 | 229 | 104 | 188 | 5.82e-15 | 71.2 |
| MS.gene62594.t1 | AT1G07050 | 38.400 | 125 | 39 | 4 | 109 | 232 | 104 | 191 | 9.38e-15 | 70.9 |
| MS.gene62594.t1 | AT1G68520 | 34.586 | 133 | 62 | 4 | 108 | 235 | 288 | 400 | 1.51e-13 | 69.7 |
| MS.gene62594.t1 | AT1G49130 | 59.184 | 49 | 20 | 0 | 190 | 238 | 276 | 324 | 2.17e-11 | 63.2 |
| MS.gene62594.t1 | AT1G49130 | 59.184 | 49 | 20 | 0 | 190 | 238 | 269 | 317 | 2.57e-11 | 62.8 |
Find 59 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTATTTGTACAGGTAATA+TGG | 0.161633 | 7.3:+68399195 | MS.gene62594:intron |
| GGTTATGGGTGTGATGTTAA+TGG | 0.287554 | 7.3:+68399221 | MS.gene62594:CDS |
| TTGTTAGCTCCAACAACTTC+AGG | 0.323703 | 7.3:-68399260 | None:intergenic |
| TTGAATGCTTGGTCTGATAA+AGG | 0.338505 | 7.3:+68397748 | MS.gene62594:CDS |
| CAGGTAATATGGGATGGTTA+TGG | 0.362688 | 7.3:+68399206 | MS.gene62594:intron |
| AGGTAATATGGGATGGTTAT+GGG | 0.363177 | 7.3:+68399207 | MS.gene62594:intron |
| TGAAGAGAGTGAAGAGAGAT+GGG | 0.373318 | 7.3:+68397597 | MS.gene62594:CDS |
| AAAGGTTCTCTTTATGTTGA+TGG | 0.373469 | 7.3:+68397766 | MS.gene62594:CDS |
| CAGACTGTTCCTGATTTGTT+CGG | 0.385801 | 7.3:+68397805 | MS.gene62594:CDS |
| GGTATTTGTACAGGTAATAT+GGG | 0.387282 | 7.3:+68399196 | MS.gene62594:intron |
| TGTGAAGGTGAAGGAAGAAA+TGG | 0.408295 | 7.3:+68399289 | MS.gene62594:CDS |
| ATGAAGAGAGTGAAGAGAGA+TGG | 0.416748 | 7.3:+68397596 | MS.gene62594:CDS |
| GAAGAAATGGGTTGGAAGCT+TGG | 0.419659 | 7.3:+68399302 | MS.gene62594:CDS |
| AAGAAATGGGTTGGAAGCTT+GGG | 0.434227 | 7.3:+68399303 | MS.gene62594:CDS |
| ATTGAACCACCGAACAAATC+AGG | 0.449972 | 7.3:-68397814 | None:intergenic |
| GGAAAGCAATGAGGAGGAAG+AGG | 0.454954 | 7.3:+68397566 | MS.gene62594:CDS |
| GTTATGGGTGTGATGTTAAT+GGG | 0.457104 | 7.3:+68399222 | MS.gene62594:CDS |
| GACGGTGGAGCAACGCTAAA+CGG | 0.458187 | 7.3:+68397433 | MS.gene62594:CDS |
| GAAGTTAATAGTACTTGTGT+TGG | 0.464035 | 7.3:+68397667 | MS.gene62594:CDS |
| AGGTGTCCGGTGATGGATCA+AGG | 0.465230 | 7.3:+68397535 | MS.gene62594:CDS |
| TGGAAAGTTCCTGAAGTTGT+TGG | 0.467176 | 7.3:+68399251 | MS.gene62594:CDS |
| AATAGTAAAATTACATTGGG+AGG | 0.502567 | 7.3:-68397838 | None:intergenic |
| AGAGACGAAGAAGGAAATGA+TGG | 0.504022 | 7.3:+68397642 | MS.gene62594:CDS |
| AGTGATGAGGTGTCCGGTGA+TGG | 0.506901 | 7.3:+68397528 | MS.gene62594:CDS |
| AGTTGTTGAAGAGACGAAGA+AGG | 0.513266 | 7.3:+68397633 | MS.gene62594:CDS |
| GACGACGACGGAGGAAGAAG+AGG | 0.527666 | 7.3:+68397495 | MS.gene62594:CDS |
| ATGATGGGATATTGAATGCT+TGG | 0.532795 | 7.3:+68397737 | MS.gene62594:CDS |
| TGTTGAGATACAAAGAGAAG+AGG | 0.545019 | 7.3:+68399342 | MS.gene62594:CDS |
| TCAACTTGCGAACTTCATAA+CGG | 0.545911 | 7.3:-68399391 | None:intergenic |
| TTATGTTGATGGTTGTGATG+AGG | 0.548680 | 7.3:+68397777 | MS.gene62594:CDS |
| ATAGTAAAATTACATTGGGA+GGG | 0.550943 | 7.3:-68397837 | None:intergenic |
| TCCGGTGATGGATCAAGGGT+TGG | 0.551320 | 7.3:+68397540 | MS.gene62594:CDS |
| ACTGTTCCTGATTTGTTCGG+TGG | 0.551576 | 7.3:+68397808 | MS.gene62594:CDS |
| GTTTGAAGCTTGATCATGAT+GGG | 0.563359 | 7.3:+68397722 | MS.gene62594:CDS |
| AGTTTGAAGCTTGATCATGA+TGG | 0.572212 | 7.3:+68397721 | MS.gene62594:CDS |
| TTTGTACAGGTAATATGGGA+TGG | 0.575240 | 7.3:+68399200 | MS.gene62594:intron |
| GACGAAGAAGGAAATGATGG+AGG | 0.575278 | 7.3:+68397645 | MS.gene62594:CDS |
| GTGAAGGTGAAGGAAGAAAT+GGG | 0.575413 | 7.3:+68399290 | MS.gene62594:CDS |
| ACCAACCCTTGATCCATCAC+CGG | 0.584061 | 7.3:-68397541 | None:intergenic |
| TGGTGAGGAAAGCAATGAGG+AGG | 0.586113 | 7.3:+68397560 | MS.gene62594:CDS |
| AGGTGAAGGAAGAAATGGGT+TGG | 0.586587 | 7.3:+68399294 | MS.gene62594:CDS |
| ACCAGATATGTCTAAATGCA+TGG | 0.589382 | 7.3:-68399461 | None:intergenic |
| CAATAACAATGTGAAGGTGA+AGG | 0.593718 | 7.3:+68399280 | MS.gene62594:CDS |
| AGAAATAGTACCTTCATCCT+CGG | 0.597938 | 7.3:-68399428 | None:intergenic |
| GTTTAGCGTTGCTCCACCGT+CGG | 0.602611 | 7.3:-68397431 | None:intergenic |
| ATTGTCAGTGATGAGGTGTC+CGG | 0.606087 | 7.3:+68397522 | MS.gene62594:CDS |
| TGATGGATCAAGGGTTGGTG+AGG | 0.611319 | 7.3:+68397545 | MS.gene62594:CDS |
| TTGGAAGCTTGGGCAGAGAG+AGG | 0.619401 | 7.3:+68399313 | MS.gene62594:CDS |
| AACAAATCAGGAACAGTCTG+AGG | 0.628449 | 7.3:-68397802 | None:intergenic |
| AGCTAACAATAACAATGTGA+AGG | 0.629964 | 7.3:+68399274 | MS.gene62594:CDS |
| AACGGTGATGACGACGACGG+AGG | 0.631073 | 7.3:+68397486 | MS.gene62594:CDS |
| AGGAGTCATTGTCAGTGATG+AGG | 0.647629 | 7.3:+68397515 | MS.gene62594:CDS |
| GTGATGTTAATGGGAACACA+TGG | 0.674682 | 7.3:+68399231 | MS.gene62594:CDS |
| GGTTGGTGAGGAAAGCAATG+AGG | 0.677201 | 7.3:+68397557 | MS.gene62594:CDS |
| GCGTTACTCTTCACATCCGA+CGG | 0.677661 | 7.3:+68397415 | MS.gene62594:CDS |
| GGTGTCCGGTGATGGATCAA+GGG | 0.677873 | 7.3:+68397536 | MS.gene62594:CDS |
| TTACTCTTCACATCCGACGG+TGG | 0.716926 | 7.3:+68397418 | MS.gene62594:CDS |
| TGAATCGACTACGTTAACAA+CGG | 0.720555 | 7.3:+68397468 | MS.gene62594:CDS |
| AACAACGGTGATGACGACGA+CGG | 0.737423 | 7.3:+68397483 | MS.gene62594:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAGTAAAATTACAT+TGG | - | chr7.3:68397845-68397864 | None:intergenic | 10.0% |
| !! | AAAAATAGTAAAATTACATT+GGG | - | chr7.3:68397844-68397863 | None:intergenic | 10.0% |
| !! | ATCAATTTAGAAATATATTA+TGG | + | chr7.3:68399129-68399148 | MS.gene62594:intron | 10.0% |
| !!! | TCAATGATTTGTTTTTAAAT+TGG | - | chr7.3:68398380-68398399 | None:intergenic | 15.0% |
| !!! | TTAAGTTGATTTTATAAGAT+TGG | + | chr7.3:68399014-68399033 | MS.gene62594:intron | 15.0% |
| !!! | TTTTATTATTGGTTACTTTT+TGG | + | chr7.3:68398588-68398607 | MS.gene62594:intron | 15.0% |
| !!! | TTTTTGTTTATAAATGTGAA+CGG | + | chr7.3:68398846-68398865 | MS.gene62594:intron | 15.0% |
| !! | AAAATCAACTTAAACCATTA+TGG | - | chr7.3:68399007-68399026 | None:intergenic | 20.0% |
| !! | AACCAATAATAAAAAGTTGT+CGG | - | chr7.3:68398582-68398601 | None:intergenic | 20.0% |
| !! | ACTTGATGCAAATTATAATT+TGG | - | chr7.3:68398271-68398290 | None:intergenic | 20.0% |
| !!! | ATCTTACATTTAAAACATGA+TGG | + | chr7.3:68398632-68398651 | MS.gene62594:intron | 20.0% |
| !!! | ATTGTTAGAGAAAATCTTTT+AGG | + | chr7.3:68399097-68399116 | MS.gene62594:intron | 20.0% |
| !!! | ATTTTTTCCAATTAATTGAG+TGG | + | chr7.3:68398055-68398074 | MS.gene62594:intron | 20.0% |
| !!! | GATTTTATAAGATTGGTTTA+TGG | + | chr7.3:68399021-68399040 | MS.gene62594:intron | 20.0% |
| !!! | TTTTTTTTTGTACATGTGAT+CGG | - | chr7.3:68398730-68398749 | None:intergenic | 20.0% |
| ! | AAATATATCACAACCAAACA+GGG | - | chr7.3:68398704-68398723 | None:intergenic | 25.0% |
| ! | AATAGTAAAATTACATTGGG+AGG | - | chr7.3:68397841-68397860 | None:intergenic | 25.0% |
| ! | ATAGTAAAATTACATTGGGA+GGG | - | chr7.3:68397840-68397859 | None:intergenic | 25.0% |
| ! | ATGTGAAGAAATAGGAAATT+TGG | + | chr7.3:68398092-68398111 | MS.gene62594:intron | 25.0% |
| ! | CACTTTAAATGTGAAGAAAT+AGG | + | chr7.3:68398084-68398103 | MS.gene62594:intron | 25.0% |
| ! | TTCAATTTATTGCATCAACT+TGG | - | chr7.3:68399078-68399097 | None:intergenic | 25.0% |
| !! | AAAATAGATGTTTTGTGTCA+AGG | - | chr7.3:68398149-68398168 | None:intergenic | 25.0% |
| !! | ATTTCTTTTGTGCATGTTTT+TGG | + | chr7.3:68398526-68398545 | MS.gene62594:intron | 25.0% |
| !! | GAATAGTGATGATTTCATTT+TGG | + | chr7.3:68398554-68398573 | MS.gene62594:intron | 25.0% |
| !! | TTCATTTGATAGTAACAAGT+GGG | - | chr7.3:68399156-68399175 | None:intergenic | 25.0% |
| !! | TTGACACAAAACATCTATTT+TGG | + | chr7.3:68398148-68398167 | MS.gene62594:intron | 25.0% |
| !! | TTTTTAATCAGTTATGAGTG+TGG | + | chr7.3:68398429-68398448 | MS.gene62594:intron | 25.0% |
| !!! | TATTGGTTACTTTTTGGTAA+GGG | + | chr7.3:68398594-68398613 | MS.gene62594:intron | 25.0% |
| !!! | TTATTGGTTACTTTTTGGTA+AGG | + | chr7.3:68398593-68398612 | MS.gene62594:intron | 25.0% |
| AAAGGTTCTCTTTATGTTGA+TGG | + | chr7.3:68397766-68397785 | MS.gene62594:CDS | 30.0% | |
| AAGCTATTTGGTATTTGTAC+AGG | + | chr7.3:68399187-68399206 | MS.gene62594:intron | 30.0% | |
| AGCTAACAATAACAATGTGA+AGG | + | chr7.3:68399274-68399293 | MS.gene62594:CDS | 30.0% | |
| GAAATATATCACAACCAAAC+AGG | - | chr7.3:68398705-68398724 | None:intergenic | 30.0% | |
| GAAGTTAATAGTACTTGTGT+TGG | + | chr7.3:68397667-68397686 | MS.gene62594:CDS | 30.0% | |
| GGCTTAAATCATGAACTAAA+TGG | - | chr7.3:68398250-68398269 | None:intergenic | 30.0% | |
| GGTATTTGTACAGGTAATAT+GGG | + | chr7.3:68399196-68399215 | MS.gene62594:intron | 30.0% | |
| TGGTATTTGTACAGGTAATA+TGG | + | chr7.3:68399195-68399214 | MS.gene62594:intron | 30.0% | |
| TGGTGTGACAAAGATTATTA+TGG | + | chr7.3:68399041-68399060 | MS.gene62594:intron | 30.0% | |
| ! | CACCGACAACTTTTTATTAT+TGG | + | chr7.3:68398577-68398596 | MS.gene62594:intron | 30.0% |
| ! | CTTCATTTGATAGTAACAAG+TGG | - | chr7.3:68399157-68399176 | None:intergenic | 30.0% |
| ! | GTTAGAGAAAATCTTTTAGG+TGG | + | chr7.3:68399100-68399119 | MS.gene62594:intron | 30.0% |
| !! | TTCTTTTACCCTTGTTTCAA+TGG | + | chr7.3:68398678-68398697 | MS.gene62594:intron | 30.0% |
| !!! | AGTGTTTTGATGAAGCTATT+TGG | + | chr7.3:68399175-68399194 | MS.gene62594:intron | 30.0% |
| !!! | ATCTATTTTGGTGCCATTAA+TGG | + | chr7.3:68398160-68398179 | MS.gene62594:intron | 30.0% |
| !!! | ATTGGTTACTTTTTGGTAAG+GGG | + | chr7.3:68398595-68398614 | MS.gene62594:intron | 30.0% |
| AGAAATAGTACCTTCATCCT+CGG | - | chr7.3:68399431-68399450 | None:intergenic | 35.0% | |
| AGGTAATATGGGATGGTTAT+GGG | + | chr7.3:68399207-68399226 | MS.gene62594:intron | 35.0% | |
| ATGGTAAGCTACAAGGATAA+TGG | - | chr7.3:68398231-68398250 | None:intergenic | 35.0% | |
| ATGTAAGATCCTAATCAAGC+AGG | - | chr7.3:68398621-68398640 | None:intergenic | 35.0% | |
| CAATAACAATGTGAAGGTGA+AGG | + | chr7.3:68399280-68399299 | MS.gene62594:CDS | 35.0% | |
| CATTAAATCTGGGCCATTAA+TGG | - | chr7.3:68398176-68398195 | None:intergenic | 35.0% | |
| CATTAATGGCCCAGATTTAA+TGG | + | chr7.3:68398174-68398193 | MS.gene62594:intron | 35.0% | |
| GAACTAAATGGTAAGCTACA+AGG | - | chr7.3:68398238-68398257 | None:intergenic | 35.0% | |
| GACAAAGATTATTATGGACG+AGG | + | chr7.3:68399047-68399066 | MS.gene62594:intron | 35.0% | |
| GTTATGGGTGTGATGTTAAT+GGG | + | chr7.3:68399222-68399241 | MS.gene62594:CDS | 35.0% | |
| TCAACTTGCGAACTTCATAA+CGG | - | chr7.3:68399394-68399413 | None:intergenic | 35.0% | |
| TGAATCGACTACGTTAACAA+CGG | + | chr7.3:68397468-68397487 | MS.gene62594:CDS | 35.0% | |
| TGGTAAGCTACAAGGATAAT+GGG | - | chr7.3:68398230-68398249 | None:intergenic | 35.0% | |
| TGTTGAGATACAAAGAGAAG+AGG | + | chr7.3:68399342-68399361 | MS.gene62594:CDS | 35.0% | |
| TTGAATGCTTGGTCTGATAA+AGG | + | chr7.3:68397748-68397767 | MS.gene62594:CDS | 35.0% | |
| TTTGTACAGGTAATATGGGA+TGG | + | chr7.3:68399200-68399219 | MS.gene62594:intron | 35.0% | |
| TTTGTGTGTGACATCCATAA+TGG | + | chr7.3:68398990-68399009 | MS.gene62594:intron | 35.0% | |
| ! | AGTGATTTTGCCAACTTCAA+AGG | - | chr7.3:68397990-68398009 | None:intergenic | 35.0% |
| ! | AGTTTGAAGCTTGATCATGA+TGG | + | chr7.3:68397721-68397740 | MS.gene62594:CDS | 35.0% |
| ! | ATGATGGGATATTGAATGCT+TGG | + | chr7.3:68397737-68397756 | MS.gene62594:CDS | 35.0% |
| ! | GCAAGTTGAATGCTGAAAAA+CGG | + | chr7.3:68399405-68399424 | MS.gene62594:CDS | 35.0% |
| ! | GTTTGAAGCTTGATCATGAT+GGG | + | chr7.3:68397722-68397741 | MS.gene62594:CDS | 35.0% |
| !! | TTATGTTGATGGTTGTGATG+AGG | + | chr7.3:68397777-68397796 | MS.gene62594:CDS | 35.0% |
| !! | TTGTGCATGTGACTGATTTT+TGG | + | chr7.3:68398491-68398510 | MS.gene62594:intron | 35.0% |
| !!! | CTTTTGTGCATGTTTTTGGA+TGG | + | chr7.3:68398530-68398549 | MS.gene62594:intron | 35.0% |
| !!! | TTGAAACGACGTCGTTTTTT+GGG | + | chr7.3:68397692-68397711 | MS.gene62594:CDS | 35.0% |
| !!! | TTTGAAACGACGTCGTTTTT+TGG | + | chr7.3:68397691-68397710 | MS.gene62594:CDS | 35.0% |
| AAACAGGGCCATTGAAACAA+GGG | - | chr7.3:68398689-68398708 | None:intergenic | 40.0% | |
| AACAAATCAGGAACAGTCTG+AGG | - | chr7.3:68397805-68397824 | None:intergenic | 40.0% | |
| AGAGACGAAGAAGGAAATGA+TGG | + | chr7.3:68397642-68397661 | MS.gene62594:CDS | 40.0% | |
| AGTTGTTGAAGAGACGAAGA+AGG | + | chr7.3:68397633-68397652 | MS.gene62594:CDS | 40.0% | |
| ATAATAGTCGTGACCCTTGT+CGG | + | chr7.3:68398876-68398895 | MS.gene62594:intron | 40.0% | |
| ATGAAGAGAGTGAAGAGAGA+TGG | + | chr7.3:68397596-68397615 | MS.gene62594:CDS | 40.0% | |
| ATTGAACCACCGAACAAATC+AGG | - | chr7.3:68397817-68397836 | None:intergenic | 40.0% | |
| CAGGTAATATGGGATGGTTA+TGG | + | chr7.3:68399206-68399225 | MS.gene62594:intron | 40.0% | |
| GGTTATGGGTGTGATGTTAA+TGG | + | chr7.3:68399221-68399240 | MS.gene62594:CDS | 40.0% | |
| GTGAAGGTGAAGGAAGAAAT+GGG | + | chr7.3:68399290-68399309 | MS.gene62594:CDS | 40.0% | |
| GTGATGTTAATGGGAACACA+TGG | + | chr7.3:68399231-68399250 | MS.gene62594:CDS | 40.0% | |
| GTGTGAGCCACTCAATTAAT+TGG | - | chr7.3:68398065-68398084 | None:intergenic | 40.0% | |
| TGAAGAGAGTGAAGAGAGAT+GGG | + | chr7.3:68397597-68397616 | MS.gene62594:CDS | 40.0% | |
| TGGAAAGTTCCTGAAGTTGT+TGG | + | chr7.3:68399251-68399270 | MS.gene62594:CDS | 40.0% | |
| TGTGAAGGTGAAGGAAGAAA+TGG | + | chr7.3:68399289-68399308 | MS.gene62594:CDS | 40.0% | |
| TTGCCAACTTCAAAGCCAAT+CGG | - | chr7.3:68397945-68397964 | None:intergenic | 40.0% | |
| TTGTTAGCTCCAACAACTTC+AGG | - | chr7.3:68399263-68399282 | None:intergenic | 40.0% | |
| ! | ATTTTGCCAACTTCAAGCTG+AGG | + | chr7.3:68398021-68398040 | MS.gene62594:intron | 40.0% |
| ! | GAAATTTGGAGCTCGAATCT+CGG | + | chr7.3:68398106-68398125 | MS.gene62594:intron | 40.0% |
| !! | AAGAAATGGGTTGGAAGCTT+GGG | + | chr7.3:68399303-68399322 | MS.gene62594:CDS | 40.0% |
| !! | AAGGATAATGGGTAGCACTT+TGG | - | chr7.3:68398219-68398238 | None:intergenic | 40.0% |
| !! | CAGACTGTTCCTGATTTGTT+CGG | + | chr7.3:68397805-68397824 | MS.gene62594:CDS | 40.0% |
| !! | TAGCACTTTGGTGCCATTAA+TGG | - | chr7.3:68398207-68398226 | None:intergenic | 40.0% |
| AATGCTCAATTCCTCCGACA+AGG | - | chr7.3:68398893-68398912 | None:intergenic | 45.0% | |
| AGGAGTCATTGTCAGTGATG+AGG | + | chr7.3:68397515-68397534 | MS.gene62594:CDS | 45.0% | |
| AGGTGAAGGAAGAAATGGGT+TGG | + | chr7.3:68399294-68399313 | MS.gene62594:CDS | 45.0% | |
| ATGCTCAATTCCTCCGACAA+GGG | - | chr7.3:68398892-68398911 | None:intergenic | 45.0% | |
| ATGGCCCAGATTTAATGGCA+CGG | + | chr7.3:68398179-68398198 | MS.gene62594:intron | 45.0% | |
| CAAACAGGGCCATTGAAACA+AGG | - | chr7.3:68398690-68398709 | None:intergenic | 45.0% | |
| CAGTGTTATCGTGATCCGAT+TGG | + | chr7.3:68397927-68397946 | MS.gene62594:intron | 45.0% | |
| CTTGTTTCAATGGCCCTGTT+TGG | + | chr7.3:68398688-68398707 | MS.gene62594:intron | 45.0% | |
| GACGAAGAAGGAAATGATGG+AGG | + | chr7.3:68397645-68397664 | MS.gene62594:CDS | 45.0% | |
| TCATCTCCTCAGCTTGAAGT+TGG | - | chr7.3:68398030-68398049 | None:intergenic | 45.0% | |
| ! | ATTGTCAGTGATGAGGTGTC+CGG | + | chr7.3:68397522-68397541 | MS.gene62594:CDS | 45.0% |
| !! | ACTGTTCCTGATTTGTTCGG+TGG | + | chr7.3:68397808-68397827 | MS.gene62594:CDS | 45.0% |
| !! | GAAGAAATGGGTTGGAAGCT+TGG | + | chr7.3:68399302-68399321 | MS.gene62594:CDS | 45.0% |
| !! | GATCCGATTGGCTTTGAAGT+TGG | + | chr7.3:68397939-68397958 | MS.gene62594:intron | 45.0% |
| !! | GCGATGATTGCCTTTGAAGT+TGG | + | chr7.3:68397977-68397996 | MS.gene62594:intron | 45.0% |
| !! | TAATGGCACGGTGCCATTAA+TGG | + | chr7.3:68398191-68398210 | MS.gene62594:intron | 45.0% |
| ACCAACCCTTGATCCATCAC+CGG | - | chr7.3:68397544-68397563 | None:intergenic | 50.0% | |
| GCGTTACTCTTCACATCCGA+CGG | + | chr7.3:68397415-68397434 | MS.gene62594:CDS | 50.0% | |
| GGAAAGCAATGAGGAGGAAG+AGG | + | chr7.3:68397566-68397585 | MS.gene62594:CDS | 50.0% | |
| TGAAAAACGGCCGAGGATGA+AGG | + | chr7.3:68399418-68399437 | MS.gene62594:CDS | 50.0% | |
| TGAATGCTGAAAAACGGCCG+AGG | + | chr7.3:68399411-68399430 | MS.gene62594:CDS | 50.0% | |
| TGGTGAGGAAAGCAATGAGG+AGG | + | chr7.3:68397560-68397579 | MS.gene62594:CDS | 50.0% | |
| TTACTCTTCACATCCGACGG+TGG | + | chr7.3:68397418-68397437 | MS.gene62594:CDS | 50.0% | |
| ! | AACAACGGTGATGACGACGA+CGG | + | chr7.3:68397483-68397502 | MS.gene62594:CDS | 50.0% |
| ! | GGCACCGTGCCATTAAATCT+GGG | - | chr7.3:68398186-68398205 | None:intergenic | 50.0% |
| ! | TGGCACCGTGCCATTAAATC+TGG | - | chr7.3:68398187-68398206 | None:intergenic | 50.0% |
| !! | GGTTGGTGAGGAAAGCAATG+AGG | + | chr7.3:68397557-68397576 | MS.gene62594:CDS | 50.0% |
| !! | TGATGGATCAAGGGTTGGTG+AGG | + | chr7.3:68397545-68397564 | MS.gene62594:CDS | 50.0% |
| ATAGTCGTGACCCTTGTCGG+AGG | + | chr7.3:68398879-68398898 | MS.gene62594:intron | 55.0% | |
| GACGGTGGAGCAACGCTAAA+CGG | + | chr7.3:68397433-68397452 | MS.gene62594:CDS | 55.0% | |
| GGTAAGGGGCCTGCTTGATT+AGG | + | chr7.3:68398609-68398628 | MS.gene62594:intron | 55.0% | |
| GTTTAGCGTTGCTCCACCGT+CGG | - | chr7.3:68397434-68397453 | None:intergenic | 55.0% | |
| TTGGAAGCTTGGGCAGAGAG+AGG | + | chr7.3:68399313-68399332 | MS.gene62594:CDS | 55.0% | |
| ! | AGTGATGAGGTGTCCGGTGA+TGG | + | chr7.3:68397528-68397547 | MS.gene62594:CDS | 55.0% |
| !! | AGGTGTCCGGTGATGGATCA+AGG | + | chr7.3:68397535-68397554 | MS.gene62594:CDS | 55.0% |
| !! | GGTGTCCGGTGATGGATCAA+GGG | + | chr7.3:68397536-68397555 | MS.gene62594:CDS | 55.0% |
| !! | TCCGGTGATGGATCAAGGGT+TGG | + | chr7.3:68397540-68397559 | MS.gene62594:CDS | 55.0% |
| GACGACGACGGAGGAAGAAG+AGG | + | chr7.3:68397495-68397514 | MS.gene62594:CDS | 60.0% | |
| ! | AACGGTGATGACGACGACGG+AGG | + | chr7.3:68397486-68397505 | MS.gene62594:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 68397394 | 68399472 | 68397394 | ID=MS.gene62594 |
| chr7.3 | mRNA | 68397394 | 68399472 | 68397394 | ID=MS.gene62594.t1;Parent=MS.gene62594 |
| chr7.3 | exon | 68397394 | 68397846 | 68397394 | ID=MS.gene62594.t1.exon1;Parent=MS.gene62594.t1 |
| chr7.3 | CDS | 68397394 | 68397846 | 68397394 | ID=cds.MS.gene62594.t1;Parent=MS.gene62594.t1 |
| chr7.3 | exon | 68399209 | 68399472 | 68399209 | ID=MS.gene62594.t1.exon2;Parent=MS.gene62594.t1 |
| chr7.3 | CDS | 68399209 | 68399472 | 68399209 | ID=cds.MS.gene62594.t1;Parent=MS.gene62594.t1 |
| Gene Sequence |
| Protein sequence |
