AlfalfaGEDB | MS.gene86236

M. sativa cultivar XinJiangDaYe / MS.gene86236

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF04770.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86236.t1	XP_003613092.2	96.9	256	3	2	1	251	17	272	2.40E-92	348.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86236.t1	A2Z259	47.2	229	93	3	50	250	49	277	2.7e-47	190.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86236.t1	G7JXR5	96.9	256	3	2	1	251	17	272	1.8e-92	348.6

TFs/TRs:

Gene ID	Type	Classification
MS.gene86236.t1	TF	zf-HD

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049260	MS.gene86236	0.844383	7.82E-59	-1.69E-46
MS.gene049758	MS.gene86236	0.855996	4.34E-62	-1.69E-46
MS.gene050128	MS.gene86236	0.869959	2.09E-66	-1.69E-46
MS.gene050301	MS.gene86236	0.854944	8.78E-62	-1.69E-46
MS.gene05101	MS.gene86236	0.8024	5.71E-49	-1.69E-46
MS.gene051487	MS.gene86236	0.80558	1.25E-49	-1.69E-46
MS.gene051663	MS.gene86236	0.80226	6.10E-49	-1.69E-46
MS.gene051789	MS.gene86236	0.83024	3.28E-55	-1.69E-46
MS.gene051860	MS.gene86236	0.822934	1.82E-53	-1.69E-46
MS.gene052078	MS.gene86236	0.80957	1.77E-50	-1.69E-46
MS.gene052178	MS.gene86236	0.883483	4.32E-71	-1.69E-46
MS.gene052207	MS.gene86236	0.822166	2.74E-53	-1.69E-46
MS.gene052287	MS.gene86236	0.837555	4.85E-57	-1.69E-46
MS.gene052326	MS.gene86236	0.800258	1.57E-48	-1.69E-46
MS.gene052967	MS.gene86236	0.808142	3.58E-50	-1.69E-46
MS.gene053074	MS.gene86236	0.821571	3.76E-53	-1.69E-46
MS.gene05316	MS.gene86236	0.807107	5.94E-50	-1.69E-46
MS.gene053204	MS.gene86236	0.823395	1.42E-53	-1.69E-46
MS.gene053557	MS.gene86236	0.806163	9.40E-50	-1.69E-46
MS.gene053836	MS.gene86236	0.832013	1.20E-55	-1.69E-46
MS.gene054010	MS.gene86236	0.836395	9.60E-57	-1.69E-46
MS.gene054011	MS.gene86236	0.862601	4.51E-64	-1.69E-46
MS.gene054012	MS.gene86236	0.847519	1.10E-59	-1.69E-46
MS.gene054013	MS.gene86236	0.847273	1.28E-59	-1.69E-46
MS.gene054184	MS.gene86236	0.826497	2.63E-54	-1.69E-46
MS.gene054185	MS.gene86236	0.824872	6.38E-54	-1.69E-46
MS.gene054214	MS.gene86236	0.860403	2.12E-63	-1.69E-46
MS.gene054473	MS.gene86236	0.800271	1.56E-48	-1.69E-46
MS.gene05455	MS.gene86236	0.807878	4.08E-50	-1.69E-46
MS.gene054596	MS.gene86236	0.812104	5.01E-51	-1.69E-46
MS.gene054618	MS.gene86236	0.832107	1.14E-55	-1.69E-46
MS.gene055133	MS.gene86236	0.807053	6.10E-50	-1.69E-46
MS.gene055277	MS.gene86236	0.854469	1.21E-61	-1.69E-46
MS.gene055303	MS.gene86236	0.83239	9.72E-56	-1.69E-46
MS.gene055390	MS.gene86236	0.836357	9.81E-57	-1.69E-46
MS.gene055422	MS.gene86236	0.841918	3.55E-58	-1.69E-46
MS.gene055428	MS.gene86236	0.812031	5.20E-51	-1.69E-46
MS.gene055604	MS.gene86236	0.873756	1.15E-67	-1.69E-46
MS.gene056191	MS.gene86236	0.807607	4.65E-50	-1.69E-46
MS.gene056612	MS.gene86236	0.815467	9.11E-52	-1.69E-46
MS.gene056629	MS.gene86236	0.813125	3.00E-51	-1.69E-46
MS.gene056772	MS.gene86236	0.824847	6.47E-54	-1.69E-46
MS.gene056902	MS.gene86236	0.838641	2.55E-57	-1.69E-46
MS.gene056931	MS.gene86236	0.833184	6.17E-56	-1.69E-46
MS.gene056933	MS.gene86236	0.831752	1.40E-55	-1.69E-46
MS.gene056935	MS.gene86236	0.821617	3.67E-53	-1.69E-46
MS.gene057121	MS.gene86236	0.807748	4.34E-50	-1.69E-46
MS.gene057439	MS.gene86236	0.819207	1.31E-52	-1.69E-46
MS.gene057448	MS.gene86236	0.80463	1.97E-49	-1.69E-46
MS.gene057450	MS.gene86236	0.811513	6.74E-51	-1.69E-46
MS.gene057469	MS.gene86236	0.817323	3.50E-52	-1.69E-46
MS.gene057779	MS.gene86236	0.810063	1.39E-50	-1.69E-46
MS.gene057796	MS.gene86236	0.808968	2.39E-50	-1.69E-46
MS.gene058002	MS.gene86236	0.819559	1.09E-52	-1.69E-46
MS.gene05811	MS.gene86236	0.84454	7.10E-59	-1.69E-46
MS.gene058484	MS.gene86236	0.81417	1.77E-51	-1.69E-46
MS.gene058660	MS.gene86236	0.805746	1.15E-49	-1.69E-46
MS.gene05907	MS.gene86236	0.825882	3.68E-54	-1.69E-46
MS.gene059228	MS.gene86236	0.842333	2.76E-58	-1.69E-46
MS.gene059294	MS.gene86236	0.852892	3.43E-61	-1.69E-46
MS.gene059518	MS.gene86236	0.825448	4.66E-54	-1.69E-46
MS.gene05984	MS.gene86236	0.82318	1.59E-53	-1.69E-46
MS.gene059894	MS.gene86236	0.80622	9.14E-50	-1.69E-46
MS.gene059974	MS.gene86236	0.820105	8.18E-53	-1.69E-46
MS.gene060005	MS.gene86236	0.827574	1.45E-54	-1.69E-46
MS.gene06037	MS.gene86236	0.870225	1.71E-66	-1.69E-46
MS.gene060476	MS.gene86236	0.848415	6.22E-60	-1.69E-46
MS.gene060559	MS.gene86236	0.83404	3.77E-56	-1.69E-46
MS.gene061049	MS.gene86236	0.841619	4.26E-58	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86236.t1	MTR_5g032600	96.875	256	3	2	1	251	17	272	0.0	503
MS.gene86236.t1	MTR_3g100650	55.714	210	70	6	54	251	76	274	1.57e-66	207
MS.gene86236.t1	MTR_5g065440	47.232	271	92	9	5	251	25	268	1.41e-64	202
MS.gene86236.t1	MTR_2g076780	44.017	234	120	4	27	250	4	236	8.42e-58	184
MS.gene86236.t1	MTR_8g069080	42.917	240	125	3	18	250	33	267	3.02e-56	181
MS.gene86236.t1	MTR_1g077020	45.274	201	83	5	56	250	7	186	8.20e-55	175
MS.gene86236.t1	MTR_7g010300	45.833	216	73	6	58	250	88	282	4.05e-52	172
MS.gene86236.t1	MTR_5g020510	42.254	213	93	4	55	250	96	295	1.68e-51	170
MS.gene86236.t1	MTR_4g134580	42.917	240	86	6	57	250	112	346	2.34e-51	171
MS.gene86236.t1	MTR_6g012280	49.246	199	90	4	58	250	91	284	8.22e-48	161
MS.gene86236.t1	MTR_6g073013	37.173	191	69	4	58	246	19	160	5.98e-33	118
MS.gene86236.t1	MTR_8g069380	58.427	89	30	3	170	251	27	115	7.37e-25	95.5
MS.gene86236.t1	MTR_8g051480	61.333	75	26	2	178	250	55	128	9.18e-23	90.5
MS.gene86236.t1	MTR_8g442330	33.121	157	72	3	69	225	16	139	2.99e-22	89.4
MS.gene86236.t1	MTR_8g467340	67.188	64	20	1	188	250	271	334	1.72e-21	92.4
MS.gene86236.t1	MTR_8g467340	71.154	52	13	1	58	107	64	115	5.20e-18	82.8
MS.gene86236.t1	MTR_3g039810	60.345	58	23	0	57	114	19	76	5.44e-19	79.3
MS.gene86236.t1	MTR_6g012220	58.824	51	17	1	56	106	19	65	5.00e-14	65.9
MS.gene86236.t1	MTR_7g070643	58.182	55	18	1	42	96	71	120	8.73e-12	62.4
MS.gene86236.t1	MTR_6g080300	45.312	64	30	1	33	96	34	92	6.62e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86236.t1	AT4G24660	54.040	198	69	4	54	251	45	220	2.39e-67	207
MS.gene86236.t1	AT4G24660	53.093	194	69	4	54	247	45	216	2.39e-64	201
MS.gene86236.t1	AT5G65410	50.732	205	87	3	47	251	64	254	7.44e-62	196
MS.gene86236.t1	AT2G02540	45.024	211	87	5	57	250	86	284	9.99e-59	189
MS.gene86236.t1	AT2G02540	45.024	211	87	5	57	250	86	284	9.99e-59	189
MS.gene86236.t1	AT1G14440	44.878	205	89	5	57	250	89	280	1.04e-52	173
MS.gene86236.t1	AT1G14440	44.878	205	89	5	57	250	89	280	1.04e-52	173
MS.gene86236.t1	AT2G18350	46.078	204	82	5	54	250	78	260	1.94e-50	166
MS.gene86236.t1	AT1G69600	45.312	192	96	3	58	247	31	215	2.13e-46	155
MS.gene86236.t1	AT5G15210	47.959	196	81	3	56	244	54	235	2.68e-45	153
MS.gene86236.t1	AT5G60480	39.462	223	109	5	27	245	4	204	9.84e-44	147
MS.gene86236.t1	AT3G50890	42.857	203	89	5	56	249	58	242	2.04e-41	142
MS.gene86236.t1	AT5G39760	41.204	216	95	5	58	250	56	262	1.22e-40	142
MS.gene86236.t1	AT3G28920	40.670	209	102	4	55	247	49	251	1.79e-40	142
MS.gene86236.t1	AT5G42780	36.500	200	98	5	55	247	61	238	6.95e-28	107
MS.gene86236.t1	AT1G75240	75.000	52	13	0	56	107	74	125	9.79e-24	97.4
MS.gene86236.t1	AT1G74660	65.000	60	21	0	56	115	37	96	1.12e-23	92.0
MS.gene86236.t1	AT1G74660	64.407	59	21	0	56	114	37	95	1.09e-22	89.7
MS.gene86236.t1	AT3G28917	56.667	60	25	1	56	114	31	90	5.46e-18	77.0
MS.gene86236.t1	AT1G18835	55.932	59	23	1	56	114	24	79	5.11e-17	74.3

Find 72 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCGGGGTATTTGCATGTTTC+TGG	0.138100	5.1:-23120502	MS.gene86236:CDS
GTTGGAGTTAGCTGAGAAAT+TGG	0.240875	5.1:-23120311	MS.gene86236:CDS
TTAACAACTCTTGATGAGTT+TGG	0.309890	5.1:+23120892	None:intergenic
CTTGCTTTACCGTCAACTTC+TGG	0.335479	5.1:-23120460	MS.gene86236:CDS
AGCGTCATGTTCTTAAGGTT+TGG	0.351100	5.1:-23120225	MS.gene86236:CDS
TCAGAAACATGATGAAGGTT+TGG	0.379981	5.1:-23120278	MS.gene86236:CDS
ATTGGTGGTCATGCTCTTGA+TGG	0.382322	5.1:-23120715	MS.gene86236:CDS
TGTTAAGCGTCATGTTCTTA+AGG	0.403141	5.1:-23120230	MS.gene86236:CDS
AAGAATCATGCTGTAGGTAT+TGG	0.441802	5.1:-23120733	MS.gene86236:CDS
TTGGAGTTAGCTGAGAAATT+GGG	0.451712	5.1:-23120310	MS.gene86236:CDS
GTTTCTGGACAGCAGAGGAC+TGG	0.452007	5.1:-23120487	MS.gene86236:CDS
AGCAACATGGTTGGTGGTGT+TGG	0.458102	5.1:-23120787	MS.gene86236:CDS
ATGGTTGGTGGTGTTGGAAA+TGG	0.467173	5.1:-23120781	MS.gene86236:CDS
TGCGGTGAGTTTATGCCGGC+AGG	0.468779	5.1:-23120691	MS.gene86236:CDS
CCGTCAACTTCTGGTGGCGG+TGG	0.471225	5.1:-23120451	MS.gene86236:CDS
GGCAGGAAGTGAAGGAACTT+TGG	0.482158	5.1:-23120674	MS.gene86236:CDS
CATAACAACAAACACACTCT+TGG	0.491859	5.1:-23120199	MS.gene86236:CDS
AATCCAAGTGGTGGTGGAAG+TGG	0.494106	5.1:-23120388	MS.gene86236:CDS
ACCACCTCCTCCACAGTTCG+CGG	0.495788	5.1:-23120542	MS.gene86236:CDS
GAACCACTTCCACCACCACT+TGG	0.498974	5.1:+23120385	None:intergenic
GCCGCGAACTGTGGAGGAGG+TGG	0.503461	5.1:+23120541	None:intergenic
AGTGGATGAGTGACCATGAT+AGG	0.506193	5.1:+23120850	None:intergenic
GCGAACTGTGGAGGAGGTGG+TGG	0.508708	5.1:+23120544	None:intergenic
AGAATTCAGAAACATGATGA+AGG	0.509328	5.1:-23120283	MS.gene86236:CDS
TCAACTTCTGGTGGCGGTGG+AGG	0.510550	5.1:-23120448	MS.gene86236:CDS
GCTTATTATCGAACTCCAGC+GGG	0.510651	5.1:-23120520	MS.gene86236:CDS
TCAAGAGTTGTTAAGATGCC+TGG	0.513910	5.1:-23120883	MS.gene86236:CDS
TGATGATGTGTCAACAGAAA+AGG	0.515803	5.1:+23120571	None:intergenic
GTTTCGAATCCAAGTGGTGG+TGG	0.518013	5.1:-23120394	MS.gene86236:CDS
AATCATGCTGTAGGTATTGG+TGG	0.532401	5.1:-23120730	MS.gene86236:CDS
CCACCGCCACCAGAAGTTGA+CGG	0.538970	5.1:+23120451	None:intergenic
GTTCAAGTAAGAAGAGGCAT+AGG	0.547707	5.1:-23120366	MS.gene86236:CDS
TGGTGGAACTGAACCTATCA+TGG	0.550765	5.1:-23120863	MS.gene86236:CDS
AAAGTTCCTTCACTTCCTGC+CGG	0.552211	5.1:+23120676	None:intergenic
CGATAATAAGCCGCGAACTG+TGG	0.552754	5.1:+23120532	None:intergenic
TAATAAGCCGCGAACTGTGG+AGG	0.552837	5.1:+23120535	None:intergenic
TTACCGTCAACTTCTGGTGG+CGG	0.554834	5.1:-23120454	MS.gene86236:CDS
AAAATTCACGCAGGAACAGA+AGG	0.559129	5.1:-23120341	MS.gene86236:CDS
TAAGCCGCGAACTGTGGAGG+AGG	0.562343	5.1:+23120538	None:intergenic
GATGATGTGTCAACAGAAAA+GGG	0.562574	5.1:+23120572	None:intergenic
TTTCTGGACAGCAGAGGACT+GGG	0.567641	5.1:-23120486	MS.gene86236:CDS
GGAACAGAAGGATAAGATGT+TGG	0.570619	5.1:-23120329	MS.gene86236:CDS
GAGGAAGAATTATGTATGGG+TGG	0.575821	5.1:-23120934	None:intergenic
TGTCTAAAGAATCATGCTGT+AGG	0.576062	5.1:-23120739	MS.gene86236:CDS
GGTCATGCTCTTGATGGTTG+CGG	0.581532	5.1:-23120709	MS.gene86236:CDS
GCTTTACCGTCAACTTCTGG+TGG	0.583371	5.1:-23120457	MS.gene86236:CDS
GAAGAATTATGTATGGGTGG+AGG	0.586004	5.1:-23120931	None:intergenic
GTGGAGGTACGCAGAGTACG+AGG	0.588222	5.1:-23120432	MS.gene86236:CDS
AGTTAGCTGAGAAATTGGGT+TGG	0.589225	5.1:-23120306	MS.gene86236:CDS
TTTATGCCGGCAGGAAGTGA+AGG	0.589438	5.1:-23120682	MS.gene86236:CDS
ACTGTGGAGGAGGTGGTGGA+TGG	0.597538	5.1:+23120548	None:intergenic
TCATCGGCAGATGTTACTGC+CGG	0.600307	5.1:-23120598	MS.gene86236:CDS
TGTCAACAGAAAAGGGTCAC+CGG	0.601235	5.1:+23120579	None:intergenic
CTTCCACCGAAAAGAGTCAT+CGG	0.604115	5.1:-23120614	MS.gene86236:CDS
TGGTTGCGGTGAGTTTATGC+CGG	0.613273	5.1:-23120695	MS.gene86236:CDS
AATGGAAACAGCAACATGGT+TGG	0.615914	5.1:-23120796	MS.gene86236:CDS
CAAGAATTCTGTAATGAAAG+CGG	0.619098	5.1:-23120253	MS.gene86236:CDS
GGCTTATTATCGAACTCCAG+CGG	0.620210	5.1:-23120521	MS.gene86236:CDS
TTGTTAAGGATGTTTCTGAG+TGG	0.621550	5.1:+23120832	None:intergenic
GAAACATGCAAATACCCCGC+TGG	0.623881	5.1:+23120505	None:intergenic
CAACAATGGAAACAGCAACA+TGG	0.631699	5.1:-23120800	MS.gene86236:CDS
TGCATGTTTCTGGACAGCAG+AGG	0.639645	5.1:-23120492	MS.gene86236:CDS
GGAAACAGCAACATGGTTGG+TGG	0.639744	5.1:-23120793	MS.gene86236:CDS
ATGATAGGTTCAGTTCCACC+AGG	0.642551	5.1:+23120865	None:intergenic
GAAGTGGTTCAAGTAAGAAG+AGG	0.649609	5.1:-23120372	MS.gene86236:CDS
AGAGTTGTTAAGATGCCTGG+TGG	0.674556	5.1:-23120880	MS.gene86236:CDS
GAAGATGTTTCGAATCCAAG+TGG	0.685294	5.1:-23120400	MS.gene86236:CDS
TGGAGGTACGCAGAGTACGA+GGG	0.690082	5.1:-23120431	MS.gene86236:CDS
GTGTTGGAAATGGAAAAGCA+AGG	0.695951	5.1:-23120771	MS.gene86236:CDS
GCATAGGACAAAATTCACGC+AGG	0.713722	5.1:-23120350	MS.gene86236:CDS
CTTATTATCGAACTCCAGCG+GGG	0.719650	5.1:-23120519	MS.gene86236:CDS
GATGTTTCGAATCCAAGTGG+TGG	0.738004	5.1:-23120397	MS.gene86236:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AACAACAACAACAACAACAA+TGG	-	chr5.1:23120291-23120310	MS.gene86236:CDS	30.0%
	AGAATTCAGAAACATGATGA+AGG	-	chr5.1:23120822-23120841	MS.gene86236:CDS	30.0%
	CAAGAATTCTGTAATGAAAG+CGG	-	chr5.1:23120852-23120871	MS.gene86236:CDS	30.0%
	TTAACAACTCTTGATGAGTT+TGG	+	chr5.1:23120216-23120235	None:intergenic	30.0%
!	TGTTGTTGTTGTTGTTGTTA+AGG	+	chr5.1:23120290-23120309	None:intergenic	30.0%
	AAGAATCATGCTGTAGGTAT+TGG	-	chr5.1:23120372-23120391	MS.gene86236:CDS	35.0%
	CATAACAACAAACACACTCT+TGG	-	chr5.1:23120906-23120925	MS.gene86236:CDS	35.0%
	GATGATGTGTCAACAGAAAA+GGG	+	chr5.1:23120536-23120555	None:intergenic	35.0%
	TCAGAAACATGATGAAGGTT+TGG	-	chr5.1:23120827-23120846	MS.gene86236:CDS	35.0%
	TGTCTAAAGAATCATGCTGT+AGG	-	chr5.1:23120366-23120385	MS.gene86236:CDS	35.0%
	TGTTAAGCGTCATGTTCTTA+AGG	-	chr5.1:23120875-23120894	MS.gene86236:CDS	35.0%
	TTGGAGTTAGCTGAGAAATT+GGG	-	chr5.1:23120795-23120814	MS.gene86236:CDS	35.0%
!	TGATGATGTGTCAACAGAAA+AGG	+	chr5.1:23120537-23120556	None:intergenic	35.0%
!	TTGTTAAGGATGTTTCTGAG+TGG	+	chr5.1:23120276-23120295	None:intergenic	35.0%
	AAAATTCACGCAGGAACAGA+AGG	-	chr5.1:23120764-23120783	MS.gene86236:CDS	40.0%
	AATGGAAACAGCAACATGGT+TGG	-	chr5.1:23120309-23120328	MS.gene86236:CDS	40.0%
	AGCGTCATGTTCTTAAGGTT+TGG	-	chr5.1:23120880-23120899	MS.gene86236:CDS	40.0%
	AGTTAGCTGAGAAATTGGGT+TGG	-	chr5.1:23120799-23120818	MS.gene86236:CDS	40.0%
	CAACAATGGAAACAGCAACA+TGG	-	chr5.1:23120305-23120324	MS.gene86236:CDS	40.0%
	GAAGATGTTTCGAATCCAAG+TGG	-	chr5.1:23120705-23120724	MS.gene86236:CDS	40.0%
	GAAGTGGTTCAAGTAAGAAG+AGG	-	chr5.1:23120733-23120752	MS.gene86236:CDS	40.0%
	GGAACAGAAGGATAAGATGT+TGG	-	chr5.1:23120776-23120795	MS.gene86236:CDS	40.0%
	GTGTTGGAAATGGAAAAGCA+AGG	-	chr5.1:23120334-23120353	MS.gene86236:CDS	40.0%
	GTTGGAGTTAGCTGAGAAAT+TGG	-	chr5.1:23120794-23120813	MS.gene86236:CDS	40.0%
	TCAAGAGTTGTTAAGATGCC+TGG	-	chr5.1:23120222-23120241	MS.gene86236:CDS	40.0%
!	ACTCTTTTCGGTGGAAGTTA+CGG	+	chr5.1:23120488-23120507	None:intergenic	40.0%
!	GTTCAAGTAAGAAGAGGCAT+AGG	-	chr5.1:23120739-23120758	MS.gene86236:CDS	40.0%
!!	AATCATGCTGTAGGTATTGG+TGG	-	chr5.1:23120375-23120394	MS.gene86236:CDS	40.0%
	AAAGTTCCTTCACTTCCTGC+CGG	+	chr5.1:23120432-23120451	None:intergenic	45.0%
	AGAGTTGTTAAGATGCCTGG+TGG	-	chr5.1:23120225-23120244	MS.gene86236:CDS	45.0%
	AGTGGATGAGTGACCATGAT+AGG	+	chr5.1:23120258-23120277	None:intergenic	45.0%
	ATGATAGGTTCAGTTCCACC+AGG	+	chr5.1:23120243-23120262	None:intergenic	45.0%
	CTTATTATCGAACTCCAGCG+GGG	-	chr5.1:23120586-23120605	MS.gene86236:CDS	45.0%
	CTTCCACCGAAAAGAGTCAT+CGG	-	chr5.1:23120491-23120510	MS.gene86236:CDS	45.0%
	CTTGCTTTACCGTCAACTTC+TGG	-	chr5.1:23120645-23120664	MS.gene86236:CDS	45.0%
	GATGTTTCGAATCCAAGTGG+TGG	-	chr5.1:23120708-23120727	MS.gene86236:CDS	45.0%
	GCATAGGACAAAATTCACGC+AGG	-	chr5.1:23120755-23120774	MS.gene86236:CDS	45.0%
	GCTTATTATCGAACTCCAGC+GGG	-	chr5.1:23120585-23120604	MS.gene86236:CDS	45.0%
	GGCTTATTATCGAACTCCAG+CGG	-	chr5.1:23120584-23120603	MS.gene86236:CDS	45.0%
	TGGTGGAACTGAACCTATCA+TGG	-	chr5.1:23120242-23120261	MS.gene86236:CDS	45.0%
	TGTCAACAGAAAAGGGTCAC+CGG	+	chr5.1:23120529-23120548	None:intergenic	45.0%
!	ATTGGTGGTCATGCTCTTGA+TGG	-	chr5.1:23120390-23120409	MS.gene86236:CDS	45.0%
!	CATCTGCCGATGACTCTTTT+CGG	+	chr5.1:23120500-23120519	None:intergenic	45.0%
!!	ATGGTTGGTGGTGTTGGAAA+TGG	-	chr5.1:23120324-23120343	MS.gene86236:CDS	45.0%
	CGATAATAAGCCGCGAACTG+TGG	+	chr5.1:23120576-23120595	None:intergenic	50.0%
	GAAACATGCAAATACCCCGC+TGG	+	chr5.1:23120603-23120622	None:intergenic	50.0%
	GCTTTACCGTCAACTTCTGG+TGG	-	chr5.1:23120648-23120667	MS.gene86236:CDS	50.0%
	GGAAACAGCAACATGGTTGG+TGG	-	chr5.1:23120312-23120331	MS.gene86236:CDS	50.0%
	GGCAGGAAGTGAAGGAACTT+TGG	-	chr5.1:23120431-23120450	MS.gene86236:CDS	50.0%
	GTTTCGAATCCAAGTGGTGG+TGG	-	chr5.1:23120711-23120730	MS.gene86236:CDS	50.0%
	TAATAAGCCGCGAACTGTGG+AGG	+	chr5.1:23120573-23120592	None:intergenic	50.0%
	TCATCGGCAGATGTTACTGC+CGG	-	chr5.1:23120507-23120526	MS.gene86236:CDS	50.0%
	TGGTTGCGGTGAGTTTATGC+CGG	-	chr5.1:23120410-23120429	MS.gene86236:CDS	50.0%
	TTACCGTCAACTTCTGGTGG+CGG	-	chr5.1:23120651-23120670	MS.gene86236:CDS	50.0%
	TTTATGCCGGCAGGAAGTGA+AGG	-	chr5.1:23120423-23120442	MS.gene86236:CDS	50.0%
	TTTCTGGACAGCAGAGGACT+GGG	-	chr5.1:23120619-23120638	MS.gene86236:CDS	50.0%
!	CTTTTCGGTGGAAGTTACGG+TGG	+	chr5.1:23120485-23120504	None:intergenic	50.0%
!	GCGGGGTATTTGCATGTTTC+TGG	-	chr5.1:23120603-23120622	MS.gene86236:CDS	50.0%
!	GGTCATGCTCTTGATGGTTG+CGG	-	chr5.1:23120396-23120415	MS.gene86236:CDS	50.0%
!!	AATCCAAGTGGTGGTGGAAG+TGG	-	chr5.1:23120717-23120736	MS.gene86236:CDS	50.0%
!!	AGCAACATGGTTGGTGGTGT+TGG	-	chr5.1:23120318-23120337	MS.gene86236:CDS	50.0%
!!	TGCATGTTTCTGGACAGCAG+AGG	-	chr5.1:23120613-23120632	MS.gene86236:CDS	50.0%
	GAACCACTTCCACCACCACT+TGG	+	chr5.1:23120723-23120742	None:intergenic	55.0%
!	CTGCCGATGACTCTTTTCGG+TGG	+	chr5.1:23120497-23120516	None:intergenic	55.0%
!	GTTTCTGGACAGCAGAGGAC+TGG	-	chr5.1:23120618-23120637	MS.gene86236:CDS	55.0%
!	TGGAGGTACGCAGAGTACGA+GGG	-	chr5.1:23120674-23120693	MS.gene86236:CDS	55.0%
	ACCACCTCCTCCACAGTTCG+CGG	-	chr5.1:23120563-23120582	MS.gene86236:CDS	60.0%
	CCACCGCCACCAGAAGTTGA+CGG	+	chr5.1:23120657-23120676	None:intergenic	60.0%
	TAAGCCGCGAACTGTGGAGG+AGG	+	chr5.1:23120570-23120589	None:intergenic	60.0%
	TGCGGTGAGTTTATGCCGGC+AGG	-	chr5.1:23120414-23120433	MS.gene86236:CDS	60.0%
!	GTGGAGGTACGCAGAGTACG+AGG	-	chr5.1:23120673-23120692	MS.gene86236:CDS	60.0%
!!	ACTGTGGAGGAGGTGGTGGA+TGG	+	chr5.1:23120560-23120579	None:intergenic	60.0%
!!	TCAACTTCTGGTGGCGGTGG+AGG	-	chr5.1:23120657-23120676	MS.gene86236:CDS	60.0%
	GCGAACTGTGGAGGAGGTGG+TGG	+	chr5.1:23120564-23120583	None:intergenic	65.0%
!!	CCGTCAACTTCTGGTGGCGG+TGG	-	chr5.1:23120654-23120673	MS.gene86236:CDS	65.0%
	GCCGCGAACTGTGGAGGAGG+TGG	+	chr5.1:23120567-23120586	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	23120186	23120941	23120186	ID=MS.gene86236
chr5.1	mRNA	23120186	23120941	23120186	ID=MS.gene86236.t1;Parent=MS.gene86236
chr5.1	exon	23120186	23120941	23120186	ID=MS.gene86236.t1.exon1;Parent=MS.gene86236.t1
chr5.1	CDS	23120186	23120941	23120186	ID=cds.MS.gene86236.t1;Parent=MS.gene86236.t1

Gene Sequence

>MS.gene86236

ATGGGTGGAGGAAATTACGACTCTTTACCAAACTCATCAAGAGTTGTTAAGATGCCTGGTGGAACTGAACCTATCATGGTCACTCATCCACTCAGAAACATCCTTAACAACAACAACAACAACAATGGAAACAGCAACATGGTTGGTGGTGTTGGAAATGGAAAAGCAAGGTATAGAGAGTGTCTAAAGAATCATGCTGTAGGTATTGGTGGTCATGCTCTTGATGGTTGCGGTGAGTTTATGCCGGCAGGAAGTGAAGGAACTTTGGAGTCACTAAAATGTGCTGCTTGTAACTGCCACCGTAACTTCCACCGAAAAGAGTCATCGGCAGATGTTACTGCCGGTGACCCTTTTCTGTTGACACATCATCACCATCCACCACCTCCTCCACAGTTCGCGGCTTATTATCGAACTCCAGCGGGGTATTTGCATGTTTCTGGACAGCAGAGGACTGGGACACTTGCTTTACCGTCAACTTCTGGTGGCGGTGGAGGTACGCAGAGTACGAGGGAAGAGCTTGAAGATGTTTCGAATCCAAGTGGTGGTGGAAGTGGTTCAAGTAAGAAGAGGCATAGGACAAAATTCACGCAGGAACAGAAGGATAAGATGTTGGAGTTAGCTGAGAAATTGGGTTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGAATTCTGTAATGAAAGCGGTGTTAAGCGTCATGTTCTTAAGGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG

Protein sequence

>MS.gene86236.t1

MGGGNYDSLPNSSRVVKMPGGTEPIMVTHPLRNILNNNNNNNGNSNMVGGVGNGKARYRECLKNHAVGIGGHALDGCGEFMPAGSEGTLESLKCAACNCHRNFHRKESSADVTAGDPFLLTHHHHPPPPPQFAAYYRTPAGYLHVSGQQRTGTLALPSTSGGGGGTQSTREELEDVSNPSGGGSGSSKKRHRTKFTQEQKDKMLELAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVWMHNNKHTLGKKP