AlfalfaGEDB | MS.gene61507

M. sativa cultivar XinJiangDaYe / MS.gene61507

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61507.t1	XP_003609300.1	97	133	4	0	1	133	1	133	9.30E-67	262.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61507.t1	Q9SN73	51.7	87	41	1	47	133	51	136	2.3e-18	93.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61507.t1	G7JCY8	97.0	133	4	0	1	133	1	133	6.7e-67	262.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene61507	0.810525	1.10E-50	-1.69E-46
MS.gene049150	MS.gene61507	0.820222	7.69E-53	-1.69E-46
MS.gene049153	MS.gene61507	0.821521	3.86E-53	-1.69E-46
MS.gene049260	MS.gene61507	0.829296	5.57E-55	-1.69E-46
MS.gene049284	MS.gene61507	0.839442	1.58E-57	-1.69E-46
MS.gene049297	MS.gene61507	0.803678	3.11E-49	-1.69E-46
MS.gene049346	MS.gene61507	0.867934	9.49E-66	-1.69E-46
MS.gene049351	MS.gene61507	0.851793	7.04E-61	-1.69E-46
MS.gene049389	MS.gene61507	0.832796	7.70E-56	-1.69E-46
MS.gene049427	MS.gene61507	0.812225	4.72E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61507.t1	MTR_4g114180	96.992	133	4	0	1	133	1	133	6.14e-91	259
MS.gene61507.t1	MTR_3g107397	53.846	104	47	1	29	132	37	139	1.65e-33	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61507.t1	AT3G47650	67.816	87	27	1	47	133	51	136	1.01e-39	130

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Find 25 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGGCCGATTTAAAGCTGG+TGG	0.561238	8.3:-13151086	MS.gene61507:CDS
AATTTGATAGATCACTTCAA+TGG	0.456646	8.3:-13151104	MS.gene61507:CDS
AGCTGGAAACTTTCAGTCTT+TGG	0.238603	8.3:-13152914	MS.gene61507:CDS
AGGAGCTGTTATTGGTAATT+CGG	0.357554	8.3:-13152983	MS.gene61507:CDS
AGGTGTGTTTGAAGATTTCA+AGG	0.464751	8.3:+13153102	None:intergenic
ATAGAATGTACACAATGCCA+AGG	0.643179	8.3:-13151137	MS.gene61507:CDS
ATAGTCCACCAGCTTTAAAT+CGG	0.467197	8.3:+13151081	None:intergenic
ATTGTTTGTGCTGATTGTAC+TGG	0.511973	8.3:-13151982	MS.gene61507:CDS
CCTTCATTGGAAAAGCCTTT+CGG	0.366502	8.3:+13152956	None:intergenic
CTTTCAGTCTTTGGTAGTTA+AGG	0.334458	8.3:-13152905	MS.gene61507:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTTTCATGGAAAAGGTT+TGG	+	chr8.3:13152727-13152746	None:intergenic	30.0%
ATGAAACAGACTGCTATAAA+TGG	+	chr8.3:13152131-13152150	None:intergenic	30.0%
ATGCTCATACAAGATAACAA+AGG	+	chr8.3:13152968-13152987	None:intergenic	30.0%
ATGGATTTGAATCCATAAGA+CGG	+	chr8.3:13152505-13152524	None:intergenic	30.0%
ATGTTCGACTGTATTGTTTA+AGG	+	chr8.3:13152193-13152212	None:intergenic	30.0%
ATTCTATGAAAGGATATGTC+AGG	-	chr8.3:13151341-13151360	MS.gene61507:intron	30.0%
CTACCTACATATTATGAATC+AGG	-	chr8.3:13152756-13152775	MS.gene61507:intron	30.0%
CTGAATATAATCACATGTGT+CGG	+	chr8.3:13151243-13151262	None:intergenic	30.0%
GAAAGAATGAAATGGAATCA+AGG	+	chr8.3:13151501-13151520	None:intergenic	30.0%
GAAGATTTCAAGGAAGAAAT+AGG	+	chr8.3:13150878-13150897	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	13150851	13153158	13150851	ID=MS.gene61507
chr8.3	mRNA	13150851	13153158	13150851	ID=MS.gene61507.t1;Parent=MS.gene61507
chr8.3	exon	13153101	13153158	13153101	ID=MS.gene61507.t1.exon1;Parent=MS.gene61507.t1
chr8.3	CDS	13153101	13153158	13153101	ID=cds.MS.gene61507.t1;Parent=MS.gene61507.t1
chr8.3	exon	13152906	13153003	13152906	ID=MS.gene61507.t1.exon2;Parent=MS.gene61507.t1
chr8.3	CDS	13152906	13153003	13152906	ID=cds.MS.gene61507.t1;Parent=MS.gene61507.t1
chr8.3	exon	13151977	13152046	13151977	ID=MS.gene61507.t1.exon3;Parent=MS.gene61507.t1
chr8.3	CDS	13151977	13152046	13151977	ID=cds.MS.gene61507.t1;Parent=MS.gene61507.t1
chr8.3	exon	13151068	13151164	13151068	ID=MS.gene61507.t1.exon4;Parent=MS.gene61507.t1
chr8.3	CDS	13151068	13151164	13151068	ID=cds.MS.gene61507.t1;Parent=MS.gene61507.t1
chr8.3	exon	13150851	13150929	13150851	ID=MS.gene61507.t1.exon5;Parent=MS.gene61507.t1
chr8.3	CDS	13150851	13150929	13150851	ID=cds.MS.gene61507.t1;Parent=MS.gene61507.t1

Gene Sequence

>MS.gene61507

ATGGCGCAATCTTTGTCTTTTGCTCCTATTTCTTCCTTGAAATCTTCAAACACACCTGGTACTATTAACTTTTATGTGTGTTTATGTTTTCTTATTTTATTTTTAATTTTTTTTACAAAACATGTATTGATGAGAATTTGTTTCACTTTTAATAGGAGCTGTTATTGGTAATTCGGTTGTCCGAAAGGCTTTTCCAATGAAGGAAGTTTCTCTGAATTCTAAAGCTGGAAACTTTCAGTCTTTGGTAGTTAAGGTGAGGTTGATTTTAGTATCCCAATTTACAAATAAAATACTTTTTATTCAGTCTCTTATGTAAACAAAGTACTGAACAACCAACCTTTGATTGAAGGCGTGTCCAGTGTTGACATGTTCTGGTGTCTGATATGACACCGACACATGTGATTATATTCAGTTAATTCATTTTCTCAAATTATCATTGGTGTCAGACGTGTCTCAGTCGTTGTCCCGGAGTGCTTCATAGATTAGTTGAATTCTATGAAAGGATATGTCAGGGCTATTTTTGGATATCTGTTGTATAATGGTTAGTGACATTAGATAGAATAGAGTGAATTTGCATACAATCATTCCTTTTTGCAGATATTTTTATAATGAAATGAAAAAGAGAAATTTGGTTTAGTCCTATGCCTCCTTGATTCCATTTCATTCTTTCATATTTGAAACAGTGAATTATGGATCCTAGTATATTCCATAGCCTTTGGTAGATCAGTACAGTAGCCAGTTTAATTTTTTCTTCAATAATAGAAAGTAGGACATGTAACAACAAAAGATCTTAAATGTAAGGACCTTAAATAGTAAATTTTTATGAAAATTTCTGTATTCATTGCATTGGAAATTGTAATAGTTGGCTTTTTGAAGGAATAATTTCTAAATTTAGGATCCTTAAAGAGTACACCGGGGGAACCTCTTTAGTAAGACCCCTGTAATTAGTTTTTACTATTGTGTCGTGGTTAACAATGGAAGAGAAGTGTTGAAATAACGGTTAGAGTTGGTGTCTTGTGTGTACAACAGATCTGTAATAGGTTTGACCTTTTCCTGATACTTGTCATAGCTGCATATATCCTGAATAAGTCTTTGATTTTGATTTAATACAGGCTACAGAAGATAGTAGCAAAGGCACAACAAAAATGAAGAGCATTGTTTGTGCTGATTGTACTGGAAATGGTAAGTGAAAATGAAGATTTCAACTTTCTTTTTATGGTTATACGTCATAGTTTTTTTTTAATCATTACTCAAAGATGTCTTTAAATTAATGAGCGCCATTTATAGCAGTCTGTTTCATATTTGAGTTAAGCACATATTTTACGAAACACTTATGTCACCTTAAACAATACAGTCGAACATCATGCTGATTCCGGCCGGCGAGAACATAGTGTCTTTGTTAGTCTGTCAATCTTTAGTTTTGTTCTCCGTGAGATAACCCAATAGTTTGGAGATTTTTCTCGCGTATTATCAGTTAGTTATTGTTGTTGATGATTCTCTAGGATTTTTTAAGCATATTTTAGGGCTACTGCTTTTGTTACCAATTATTTGGAGTTGGGGAGCTAGCTGATATTTCTACTAGATCAGCACCAGCATTCAAGCAAACCTTCCATTATAAACATCAGCTCACCAATAGATGTCAATGCATCAACCGTCTTATGGATTCAAATCCATGTCCTTCTCTTTTTCCTCGTACTTATCCTTTTTCTTCAACTTTTCTTCATGTTTGGCTAGGTTCGTGAGCTCTTGCTCATGTTCCTCCAACACTTTATACTCATTTTTCATGCGAGTAGCAGAGCTTGTGTTGTTAGCATTATCAAAAAGTCATAATTAAGAACAAGGTTAGTTTCAATGCATCTATGCAAAACTCTATCCAAACCTTTTCCATGAAAGATTTAGGCGAAGCTACCTACATATTATGAATCAGGATCTATAGAAGAGATAGATCATAAAGATTGCTTCGACTGGGCTGATAACTTTTTGCTCAATTCCAGGTGCAATAGAATGTACACAATGCCAAGGTTCTGGAGTTAATTTGATAGATCACTTCAATGGCCGATTTAAAGCTGGTGGACTATGCTGGCTATGCAGGTAACTGTATTGAATAACACACTCCTTTGTTATCTTGTATGAGCATGTGTAACTGTGTTATGTTCTTGGTTGAAAGCTGTATTAGTATGTGCCATATTATAATCATCCCTTTGCAACATGTATGTATATTTGTTTCAGGGGTAAAAAGGATATTTTGTGTGGAAGCTGTAATGGGGCTGGTTTTATTGGTGGATTCATGAGCACATTTGATGATTAG

Protein sequence

>MS.gene61507.t1

MAQSLSFAPISSLKSSNTPGAVIGNSVVRKAFPMKEVSLNSKAGNFQSLVVKATEDSSKGTTKMKSIVCADCTGNGAIECTQCQGSGVNLIDHFNGRFKAGGLCWLCRGKKDILCGSCNGAGFIGGFMSTFDD