Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44007.t1 | XP_013468987.1 | 98.9 | 379 | 4 | 0 | 1 | 379 | 1 | 379 | 2.90E-222 | 780.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44007.t1 | Q93VR3 | 91.0 | 377 | 34 | 0 | 1 | 377 | 1 | 377 | 1.7e-207 | 723.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44007.t1 | A0A072VNM9 | 98.9 | 379 | 4 | 0 | 1 | 379 | 37 | 415 | 2.1e-222 | 780.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene44007 | 0.823921 | 1.07E-53 | -1.69E-46 |
| MS.gene049297 | MS.gene44007 | 0.857453 | 1.62E-62 | -1.69E-46 |
| MS.gene049322 | MS.gene44007 | 0.801285 | 9.68E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene44007 | 0.844118 | 9.22E-59 | -1.69E-46 |
| MS.gene049382 | MS.gene44007 | 0.82337 | 1.44E-53 | -1.69E-46 |
| MS.gene049599 | MS.gene44007 | -0.830243 | 3.28E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene44007 | 0.887416 | 1.46E-72 | -1.69E-46 |
| MS.gene04984 | MS.gene44007 | 0.827633 | 1.40E-54 | -1.69E-46 |
| MS.gene049910 | MS.gene44007 | 0.833066 | 6.60E-56 | -1.69E-46 |
| MS.gene049915 | MS.gene44007 | 0.802927 | 4.45E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene44007 | 0.861213 | 1.20E-63 | -1.69E-46 |
| MS.gene050227 | MS.gene44007 | 0.861641 | 8.90E-64 | -1.69E-46 |
| MS.gene050228 | MS.gene44007 | 0.854647 | 1.07E-61 | -1.69E-46 |
| MS.gene050301 | MS.gene44007 | 0.841446 | 4.73E-58 | -1.69E-46 |
| MS.gene050319 | MS.gene44007 | -0.810833 | 9.47E-51 | -1.69E-46 |
| MS.gene050330 | MS.gene44007 | -0.818652 | 1.75E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene44007 | 0.839439 | 1.58E-57 | -1.69E-46 |
| MS.gene050623 | MS.gene44007 | -0.844082 | 9.42E-59 | -1.69E-46 |
| MS.gene050629 | MS.gene44007 | -0.834633 | 2.68E-56 | -1.69E-46 |
| MS.gene050642 | MS.gene44007 | 0.835349 | 1.77E-56 | -1.69E-46 |
| MS.gene050762 | MS.gene44007 | 0.872276 | 3.60E-67 | -1.69E-46 |
| MS.gene050763 | MS.gene44007 | 0.873187 | 1.79E-67 | -1.69E-46 |
| MS.gene050787 | MS.gene44007 | 0.808642 | 2.80E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene44007 | 0.814098 | 1.83E-51 | -1.69E-46 |
| MS.gene05119 | MS.gene44007 | -0.844608 | 6.80E-59 | -1.69E-46 |
| MS.gene051535 | MS.gene44007 | 0.807761 | 4.32E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene44007 | 0.872355 | 3.39E-67 | -1.69E-46 |
| MS.gene051663 | MS.gene44007 | 0.883873 | 3.10E-71 | -1.69E-46 |
| MS.gene051860 | MS.gene44007 | 0.846476 | 2.12E-59 | -1.69E-46 |
| MS.gene051983 | MS.gene44007 | 0.817283 | 3.57E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene44007 | 0.81202 | 5.23E-51 | -1.69E-46 |
| MS.gene052115 | MS.gene44007 | 0.813918 | 2.01E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene44007 | 0.817065 | 4.00E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene44007 | 0.803041 | 4.21E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene44007 | 0.82534 | 4.95E-54 | -1.69E-46 |
| MS.gene052302 | MS.gene44007 | 0.827587 | 1.44E-54 | -1.69E-46 |
| MS.gene052309 | MS.gene44007 | -0.805691 | 1.18E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene44007 | 0.833176 | 6.20E-56 | -1.69E-46 |
| MS.gene052600 | MS.gene44007 | 0.803219 | 3.87E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene44007 | 0.811174 | 7.99E-51 | -1.69E-46 |
| MS.gene052856 | MS.gene44007 | 0.828984 | 6.63E-55 | -1.69E-46 |
| MS.gene052858 | MS.gene44007 | 0.823451 | 1.38E-53 | -1.69E-46 |
| MS.gene052860 | MS.gene44007 | 0.820315 | 7.32E-53 | -1.69E-46 |
| MS.gene053559 | MS.gene44007 | 0.808355 | 3.23E-50 | -1.69E-46 |
| MS.gene053630 | MS.gene44007 | 0.833187 | 6.16E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene44007 | 0.899343 | 2.18E-77 | -1.69E-46 |
| MS.gene054185 | MS.gene44007 | 0.800457 | 1.43E-48 | -1.69E-46 |
| MS.gene054379 | MS.gene44007 | 0.884457 | 1.89E-71 | -1.69E-46 |
| MS.gene054473 | MS.gene44007 | 0.875866 | 2.20E-68 | -1.69E-46 |
| MS.gene054542 | MS.gene44007 | 0.820008 | 8.61E-53 | -1.69E-46 |
| MS.gene054667 | MS.gene44007 | 0.828785 | 7.41E-55 | -1.69E-46 |
| MS.gene054930 | MS.gene44007 | 0.868957 | 4.44E-66 | -1.69E-46 |
| MS.gene054942 | MS.gene44007 | 0.860186 | 2.46E-63 | -1.69E-46 |
| MS.gene054983 | MS.gene44007 | 0.841069 | 5.94E-58 | -1.69E-46 |
| MS.gene055277 | MS.gene44007 | 0.834972 | 2.20E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene44007 | 0.848087 | 7.66E-60 | -1.69E-46 |
| MS.gene055428 | MS.gene44007 | 0.869362 | 3.28E-66 | -1.69E-46 |
| MS.gene055441 | MS.gene44007 | 0.807893 | 4.05E-50 | -1.69E-46 |
| MS.gene055816 | MS.gene44007 | -0.839119 | 1.92E-57 | -1.69E-46 |
| MS.gene056069 | MS.gene44007 | -0.834355 | 3.14E-56 | -1.69E-46 |
| MS.gene056400 | MS.gene44007 | 0.830625 | 2.64E-55 | -1.69E-46 |
| MS.gene056875 | MS.gene44007 | 0.868164 | 8.00E-66 | -1.69E-46 |
| MS.gene056979 | MS.gene44007 | 0.806433 | 8.25E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene44007 | 0.81978 | 9.70E-53 | -1.69E-46 |
| MS.gene057121 | MS.gene44007 | 0.820477 | 6.72E-53 | -1.69E-46 |
| MS.gene057245 | MS.gene44007 | 0.829015 | 6.52E-55 | -1.69E-46 |
| MS.gene057260 | MS.gene44007 | 0.844311 | 8.18E-59 | -1.69E-46 |
| MS.gene057439 | MS.gene44007 | 0.81478 | 1.29E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene44007 | 0.814972 | 1.17E-51 | -1.69E-46 |
| MS.gene057665 | MS.gene44007 | 0.835967 | 1.23E-56 | -1.69E-46 |
| MS.gene057750 | MS.gene44007 | 0.823347 | 1.45E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene44007 | 0.812374 | 4.38E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene44007 | 0.850064 | 2.16E-60 | -1.69E-46 |
| MS.gene05811 | MS.gene44007 | 0.837444 | 5.18E-57 | -1.69E-46 |
| MS.gene058182 | MS.gene44007 | 0.849468 | 3.17E-60 | -1.69E-46 |
| MS.gene058435 | MS.gene44007 | 0.805743 | 1.15E-49 | -1.69E-46 |
| MS.gene058661 | MS.gene44007 | -0.821037 | 4.99E-53 | -1.69E-46 |
| MS.gene058749 | MS.gene44007 | 0.834483 | 2.92E-56 | -1.69E-46 |
| MS.gene058833 | MS.gene44007 | 0.818379 | 2.02E-52 | -1.69E-46 |
| MS.gene058845 | MS.gene44007 | 0.806635 | 7.47E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene44007 | 0.820176 | 7.88E-53 | -1.69E-46 |
| MS.gene059033 | MS.gene44007 | -0.821724 | 3.47E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene44007 | 0.843147 | 1.68E-58 | -1.69E-46 |
| MS.gene059124 | MS.gene44007 | 0.805519 | 1.28E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene44007 | 0.803694 | 3.09E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene44007 | 0.815834 | 7.55E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene44007 | 0.835251 | 1.87E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene44007 | 0.83339 | 5.48E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene44007 | 0.85346 | 2.35E-61 | -1.69E-46 |
| MS.gene059894 | MS.gene44007 | 0.831993 | 1.22E-55 | -1.69E-46 |
| MS.gene059899 | MS.gene44007 | 0.835517 | 1.60E-56 | -1.69E-46 |
| MS.gene060084 | MS.gene44007 | 0.854368 | 1.29E-61 | -1.69E-46 |
| MS.gene060297 | MS.gene44007 | 0.801161 | 1.03E-48 | -1.69E-46 |
| MS.gene06037 | MS.gene44007 | 0.821132 | 4.75E-53 | -1.69E-46 |
| MS.gene060404 | MS.gene44007 | 0.832206 | 1.08E-55 | -1.69E-46 |
| MS.gene060476 | MS.gene44007 | 0.844761 | 6.19E-59 | -1.69E-46 |
| MS.gene060683 | MS.gene44007 | 0.802798 | 4.73E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene44007 | 0.813417 | 2.59E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene44007 | 0.844468 | 7.42E-59 | -1.69E-46 |
| MS.gene061113 | MS.gene44007 | 0.808266 | 3.37E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064894 | MS.gene44007 | PPI |
| MS.gene44007 | MS.gene063165 | PPI |
| MS.gene44007 | MS.gene014281 | PPI |
| MS.gene44007 | MS.gene68222 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44007.t1 | MTR_1g080950 | 98.945 | 379 | 4 | 0 | 1 | 379 | 1 | 379 | 0.0 | 787 |
| MS.gene44007.t1 | MTR_1g080950 | 98.945 | 379 | 4 | 0 | 1 | 379 | 37 | 415 | 0.0 | 786 |
| MS.gene44007.t1 | MTR_7g115080 | 91.005 | 378 | 32 | 2 | 1 | 377 | 35 | 411 | 0.0 | 728 |
| MS.gene44007.t1 | MTR_7g115080 | 91.005 | 378 | 32 | 2 | 1 | 377 | 1 | 377 | 0.0 | 727 |
| MS.gene44007.t1 | MTR_7g115080 | 91.005 | 378 | 32 | 2 | 1 | 377 | 14 | 390 | 0.0 | 726 |
| MS.gene44007.t1 | MTR_4g120030 | 28.165 | 316 | 208 | 8 | 29 | 340 | 112 | 412 | 2.63e-28 | 115 |
| MS.gene44007.t1 | MTR_1g088480 | 27.160 | 324 | 217 | 8 | 28 | 347 | 118 | 426 | 3.34e-26 | 109 |
| MS.gene44007.t1 | MTR_4g063600 | 27.832 | 309 | 208 | 9 | 28 | 331 | 32 | 330 | 4.23e-25 | 104 |
| MS.gene44007.t1 | MTR_2g096660 | 28.662 | 314 | 199 | 11 | 28 | 331 | 38 | 336 | 6.09e-25 | 104 |
| MS.gene44007.t1 | MTR_4g063600 | 27.832 | 309 | 205 | 10 | 28 | 331 | 32 | 327 | 7.28e-24 | 101 |
| MS.gene44007.t1 | MTR_7g108490 | 24.768 | 323 | 216 | 8 | 29 | 342 | 15 | 319 | 2.72e-21 | 93.6 |
| MS.gene44007.t1 | MTR_7g108490 | 24.768 | 323 | 216 | 8 | 29 | 342 | 16 | 320 | 3.17e-21 | 93.6 |
| MS.gene44007.t1 | MTR_1g067530 | 25.074 | 339 | 210 | 9 | 26 | 329 | 110 | 439 | 8.99e-21 | 94.0 |
| MS.gene44007.t1 | MTR_4g102270 | 24.340 | 341 | 213 | 11 | 30 | 338 | 95 | 422 | 6.11e-15 | 76.3 |
| MS.gene44007.t1 | MTR_4g024600 | 24.189 | 339 | 214 | 12 | 28 | 335 | 101 | 427 | 8.60e-15 | 75.9 |
| MS.gene44007.t1 | MTR_5g011940 | 24.412 | 340 | 212 | 12 | 28 | 335 | 90 | 416 | 3.23e-14 | 73.9 |
| MS.gene44007.t1 | MTR_1g009600 | 25.688 | 327 | 217 | 14 | 26 | 337 | 3 | 318 | 5.87e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44007.t1 | AT5G28840 | 90.981 | 377 | 34 | 0 | 1 | 377 | 1 | 377 | 0.0 | 729 |
| MS.gene44007.t1 | AT5G28840 | 90.981 | 377 | 34 | 0 | 1 | 377 | 1 | 377 | 0.0 | 729 |
| MS.gene44007.t1 | AT3G62830 | 27.160 | 324 | 222 | 8 | 28 | 347 | 119 | 432 | 2.48e-28 | 115 |
| MS.gene44007.t1 | AT3G62830 | 27.160 | 324 | 222 | 8 | 28 | 347 | 119 | 432 | 2.48e-28 | 115 |
| MS.gene44007.t1 | AT2G47650 | 28.247 | 308 | 207 | 8 | 28 | 331 | 121 | 418 | 4.30e-28 | 114 |
| MS.gene44007.t1 | AT3G53520 | 27.744 | 328 | 222 | 9 | 26 | 348 | 118 | 435 | 4.30e-28 | 114 |
| MS.gene44007.t1 | AT2G47650 | 27.707 | 314 | 207 | 9 | 28 | 331 | 121 | 424 | 2.17e-26 | 110 |
| MS.gene44007.t1 | AT3G53520 | 27.134 | 328 | 222 | 10 | 26 | 348 | 118 | 433 | 3.91e-25 | 106 |
| MS.gene44007.t1 | AT2G28760 | 28.013 | 307 | 206 | 9 | 28 | 329 | 31 | 327 | 7.20e-25 | 104 |
| MS.gene44007.t1 | AT2G28760 | 28.013 | 307 | 206 | 9 | 28 | 329 | 31 | 327 | 7.20e-25 | 104 |
| MS.gene44007.t1 | AT2G28760 | 28.013 | 307 | 206 | 9 | 28 | 329 | 31 | 327 | 7.20e-25 | 104 |
| MS.gene44007.t1 | AT3G46440 | 27.653 | 311 | 202 | 10 | 28 | 329 | 29 | 325 | 8.36e-25 | 103 |
| MS.gene44007.t1 | AT3G46440 | 27.653 | 311 | 202 | 10 | 28 | 329 | 29 | 325 | 8.36e-25 | 103 |
| MS.gene44007.t1 | AT2G28760 | 28.013 | 307 | 206 | 9 | 28 | 329 | 62 | 358 | 2.08e-24 | 103 |
| MS.gene44007.t1 | AT5G59290 | 27.010 | 311 | 204 | 10 | 28 | 329 | 1 | 297 | 4.77e-24 | 101 |
| MS.gene44007.t1 | AT5G59290 | 27.010 | 311 | 204 | 10 | 28 | 329 | 30 | 326 | 7.18e-24 | 101 |
| MS.gene44007.t1 | AT1G73250 | 25.714 | 315 | 209 | 7 | 29 | 335 | 18 | 315 | 7.37e-24 | 100 |
| MS.gene44007.t1 | AT5G59290 | 27.010 | 311 | 204 | 10 | 28 | 329 | 45 | 341 | 9.35e-24 | 101 |
| MS.gene44007.t1 | AT5G59290 | 27.010 | 311 | 204 | 10 | 28 | 329 | 23 | 319 | 1.49e-23 | 100 |
| MS.gene44007.t1 | AT3G53520 | 25.779 | 353 | 220 | 11 | 26 | 348 | 118 | 458 | 2.25e-23 | 101 |
| MS.gene44007.t1 | AT1G17890 | 25.231 | 325 | 216 | 8 | 29 | 344 | 21 | 327 | 2.96e-23 | 99.4 |
| MS.gene44007.t1 | AT1G17890 | 25.231 | 325 | 216 | 8 | 29 | 344 | 13 | 319 | 3.14e-23 | 99.4 |
| MS.gene44007.t1 | AT1G17890 | 25.231 | 325 | 216 | 8 | 29 | 344 | 13 | 319 | 3.14e-23 | 99.4 |
| MS.gene44007.t1 | AT2G45310 | 26.100 | 341 | 205 | 14 | 28 | 335 | 97 | 423 | 8.71e-18 | 84.7 |
| MS.gene44007.t1 | AT3G23820 | 24.793 | 363 | 220 | 14 | 28 | 351 | 112 | 460 | 3.59e-16 | 80.1 |
| MS.gene44007.t1 | AT4G00110 | 24.706 | 340 | 211 | 13 | 28 | 335 | 91 | 417 | 4.04e-15 | 77.0 |
| MS.gene44007.t1 | AT1G02000 | 23.824 | 340 | 214 | 12 | 28 | 335 | 92 | 418 | 6.08e-14 | 73.2 |
| MS.gene44007.t1 | AT4G30440 | 23.754 | 341 | 213 | 12 | 28 | 335 | 88 | 414 | 1.15e-12 | 69.3 |
| MS.gene44007.t1 | AT1G53500 | 24.771 | 327 | 220 | 13 | 30 | 341 | 11 | 326 | 1.44e-12 | 69.7 |
Find 102 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGCTGCTAGGATTAA+TGG | 0.256067 | 1.3:+57356850 | MS.gene44007:CDS |
| CATAACATATATGGTCCTTT+TGG | 0.258635 | 1.3:+57357295 | MS.gene44007:CDS |
| CTGCCCGAAGTGAGCCTAAT+TGG | 0.271744 | 1.3:-57358509 | None:intergenic |
| TTCCGCGAGCCGGTAAATAT+TGG | 0.274622 | 1.3:+57357985 | MS.gene44007:CDS |
| GTTTCTAACTGTTTAAATTC+AGG | 0.285374 | 1.3:-57357035 | None:intergenic |
| ATCTTGAGAGAGAGCCTTAC+TGG | 0.304697 | 1.3:+57356518 | MS.gene44007:CDS |
| TTTCAATCTTGCCGCTGATA+TGG | 0.324249 | 1.3:+57356756 | MS.gene44007:CDS |
| GAGATGGCTGAGATCGTTCT+TGG | 0.352457 | 1.3:+57358033 | MS.gene44007:CDS |
| TATACCTTCAACTTCATTGT+TGG | 0.357453 | 1.3:-57358159 | None:intergenic |
| GCCTAATTGGACCGGTGCTT+GGG | 0.360185 | 1.3:-57358496 | None:intergenic |
| AATTCCATCTTGTTGATCTC+AGG | 0.363929 | 1.3:+57356689 | MS.gene44007:CDS |
| AAAATTTCCATCACTGGTGC+TGG | 0.368034 | 1.3:+57356556 | MS.gene44007:CDS |
| ATTTACCGGCTCGCGGAAAT+CGG | 0.371961 | 1.3:-57357980 | None:intergenic |
| CAAAAGGACCATATATGTTA+TGG | 0.374113 | 1.3:-57357294 | None:intergenic |
| AAGCACTACAACAAAGATTT+CGG | 0.376422 | 1.3:+57357247 | MS.gene44007:CDS |
| TCATCACTTCCAATATTTAC+CGG | 0.378878 | 1.3:-57357994 | None:intergenic |
| AGCCTAATTGGACCGGTGCT+TGG | 0.382304 | 1.3:-57358497 | None:intergenic |
| TTCAATCTTGCCGCTGATAT+GGG | 0.385962 | 1.3:+57356757 | MS.gene44007:CDS |
| GATTACATATGTCTGGATTA+AGG | 0.386996 | 1.3:+57358404 | MS.gene44007:CDS |
| GGGAGGTTCCATAACATATA+TGG | 0.396979 | 1.3:+57357286 | MS.gene44007:CDS |
| ACTGCTTAACGGTTACTAAA+GGG | 0.409840 | 1.3:+57356722 | MS.gene44007:CDS |
| AACTACTAATGTCAGCTTGA+AGG | 0.417690 | 1.3:+57357055 | MS.gene44007:CDS |
| TTTCTAACTGTTTAAATTCA+GGG | 0.425655 | 1.3:-57357034 | None:intergenic |
| GGCTGAGGATTACATATGTC+TGG | 0.425884 | 1.3:+57358397 | MS.gene44007:CDS |
| TTACGACCACGAACACCCTC+TGG | 0.430857 | 1.3:-57358096 | None:intergenic |
| GGGCCAGGAATGTGATGTAT+AGG | 0.440229 | 1.3:-57358075 | None:intergenic |
| AAGCTTAAAATTTCCATCAC+TGG | 0.443314 | 1.3:+57356550 | MS.gene44007:CDS |
| ATACATAATAACAGAATGAT+TGG | 0.454190 | 1.3:-57356800 | None:intergenic |
| TTCGGAATTGAGTGCCGCAT+TGG | 0.455787 | 1.3:+57357265 | MS.gene44007:CDS |
| TTCATTGATGAGTGTGTTGA+AGG | 0.460492 | 1.3:+57357550 | MS.gene44007:CDS |
| CCACGAACACCCTCTGGGCC+AGG | 0.469580 | 1.3:-57358090 | None:intergenic |
| GGTCCAATTAGGCTCACTTC+GGG | 0.470769 | 1.3:+57358506 | MS.gene44007:CDS |
| TCGGAATTGAGTGCCGCATT+GGG | 0.470875 | 1.3:+57357266 | MS.gene44007:CDS |
| CTCTCTCTCAAGATTCTCAT+AGG | 0.472504 | 1.3:-57356509 | None:intergenic |
| TTCTGCAGGATGGGAAGTAC+TGG | 0.475790 | 1.3:+57356463 | None:intergenic |
| ACTCCTATACATCACATTCC+TGG | 0.476449 | 1.3:+57358072 | MS.gene44007:CDS |
| ACCCAAGCACCGGTCCAATT+AGG | 0.477394 | 1.3:+57358495 | MS.gene44007:CDS |
| AAATTTCCATCACTGGTGCT+GGG | 0.477839 | 1.3:+57356557 | MS.gene44007:CDS |
| AACTGCTTAACGGTTACTAA+AGG | 0.478063 | 1.3:+57356721 | MS.gene44007:CDS |
| CTAGGATTAATGGAATTAAG+AGG | 0.478585 | 1.3:+57356860 | MS.gene44007:CDS |
| GCCGCTGATATGGGTGGAAT+GGG | 0.482360 | 1.3:+57356766 | MS.gene44007:CDS |
| CCTGGCCCAGAGGGTGTTCG+TGG | 0.486762 | 1.3:+57358090 | MS.gene44007:CDS |
| AAATTTGAGATGTGGGGAGA+TGG | 0.493691 | 1.3:+57357505 | MS.gene44007:CDS |
| TGCCGCTGATATGGGTGGAA+TGG | 0.494921 | 1.3:+57356765 | MS.gene44007:CDS |
| GGTCATGGATAACTGCTTAA+CGG | 0.498357 | 1.3:+57356711 | MS.gene44007:CDS |
| TAAATCCGATTTCCGCGAGC+CGG | 0.501210 | 1.3:+57357975 | MS.gene44007:CDS |
| TACAGACAAATTTGAGATGT+GGG | 0.508195 | 1.3:+57357498 | MS.gene44007:CDS |
| GGCTCCAACAATGAAGTTGA+AGG | 0.508928 | 1.3:+57358155 | MS.gene44007:CDS |
| ATTACATTATTGCTTCTGAC+TGG | 0.512162 | 1.3:+57356626 | MS.gene44007:CDS |
| GATTAAGGAACAACTTGAAA+GGG | 0.521122 | 1.3:+57358419 | MS.gene44007:CDS |
| CGGTCCAATTAGGCTCACTT+CGG | 0.527001 | 1.3:+57358505 | MS.gene44007:CDS |
| GCTCAAGGTCTTGATACATC+AGG | 0.527626 | 1.3:+57358447 | MS.gene44007:CDS |
| ATACCTTTCCATGTTCCAAA+AGG | 0.529802 | 1.3:-57357310 | None:intergenic |
| AATCGCGAACAAACCTCAGC+AGG | 0.536092 | 1.3:-57357092 | None:intergenic |
| TAATAAAAGAGAAACTTGGC+TGG | 0.537272 | 1.3:+57358133 | MS.gene44007:CDS |
| TGCTTTGTCATACAGGTGGA+AGG | 0.539745 | 1.3:+57357434 | MS.gene44007:intron |
| CAGCGGCAAGATTGAAAACA+TGG | 0.540286 | 1.3:-57356750 | None:intergenic |
| AATTTCCATCACTGGTGCTG+GGG | 0.543928 | 1.3:+57356558 | MS.gene44007:CDS |
| TCTTGTTGATCTCAGGGTCA+TGG | 0.544557 | 1.3:+57356696 | MS.gene44007:CDS |
| ATTCCATCTTGTTGATCTCA+GGG | 0.549458 | 1.3:+57356690 | MS.gene44007:CDS |
| CTGCTTAACGGTTACTAAAG+GGG | 0.550109 | 1.3:+57356723 | MS.gene44007:CDS |
| TTCAACACACTCATCAATGA+AGG | 0.550166 | 1.3:-57357548 | None:intergenic |
| GTTTAGCCACAAGATGCGTA+TGG | 0.550376 | 1.3:+57357193 | MS.gene44007:intron |
| CTTAGCGCGGCGTCTCAAGA+AGG | 0.553238 | 1.3:+57356597 | MS.gene44007:CDS |
| GGCTCACTTCGGGCAGCAGA+CGG | 0.553347 | 1.3:+57358516 | MS.gene44007:CDS |
| TCAATATGATTGAAGCTGCT+AGG | 0.554345 | 1.3:+57356842 | MS.gene44007:CDS |
| CGAAGTGAGCCTAATTGGAC+CGG | 0.556358 | 1.3:-57358504 | None:intergenic |
| TGGTATTGTAGGATGGGCTG+AGG | 0.562487 | 1.3:+57358382 | MS.gene44007:intron |
| TCATACAGGTGGAAGGGAGA+AGG | 0.564053 | 1.3:+57357441 | MS.gene44007:intron |
| GGATTAAGGAACAACTTGAA+AGG | 0.565415 | 1.3:+57358418 | MS.gene44007:CDS |
| GTCTGATGCATGGCCTGCTG+AGG | 0.565899 | 1.3:+57357079 | MS.gene44007:CDS |
| ATTTCCATCACTGGTGCTGG+GGG | 0.574182 | 1.3:+57356559 | MS.gene44007:CDS |
| GGTCTTGATACATCAGGATA+CGG | 0.574577 | 1.3:+57358453 | MS.gene44007:CDS |
| CTTGAAAGGGAGAAGGCTCA+AGG | 0.580968 | 1.3:+57358432 | MS.gene44007:CDS |
| TACGACCACGAACACCCTCT+GGG | 0.582303 | 1.3:-57358095 | None:intergenic |
| GCTAGAGAAGCTTGCAACAG+AGG | 0.582464 | 1.3:+57357216 | MS.gene44007:CDS |
| GAATTGAGTGCCGCATTGGG+AGG | 0.584070 | 1.3:+57357269 | MS.gene44007:CDS |
| ACACTAATAAAAGAGAAACT+TGG | 0.584612 | 1.3:+57358129 | MS.gene44007:CDS |
| AGTGTGTTGAAGGTGTACTT+AGG | 0.590072 | 1.3:+57357560 | MS.gene44007:CDS |
| AGGATACGGCTCATCAAAAG+TGG | 0.590362 | 1.3:+57358467 | MS.gene44007:CDS |
| TTATCGCGTCGCACTTAGCG+CGG | 0.590377 | 1.3:+57356584 | MS.gene44007:CDS |
| AATCTTGCCGCTGATATGGG+TGG | 0.591075 | 1.3:+57356760 | MS.gene44007:CDS |
| AGCGCGGCGTCTCAAGAAGG+AGG | 0.592364 | 1.3:+57356600 | MS.gene44007:CDS |
| CATCACATTCCTGGCCCAGA+GGG | 0.594287 | 1.3:+57358081 | MS.gene44007:CDS |
| TTCCAATATTTACCGGCTCG+CGG | 0.595261 | 1.3:-57357987 | None:intergenic |
| TGACCCTGAGATCAACAAGA+TGG | 0.595396 | 1.3:-57356693 | None:intergenic |
| TTTAGCCACAAGATGCGTAT+GGG | 0.596572 | 1.3:+57357194 | MS.gene44007:intron |
| CTACAGACAAATTTGAGATG+TGG | 0.598727 | 1.3:+57357497 | MS.gene44007:CDS |
| AATAAAAGAGAAACTTGGCT+GGG | 0.602593 | 1.3:+57358134 | MS.gene44007:CDS |
| GCTTTGTCATACAGGTGGAA+GGG | 0.602719 | 1.3:+57357435 | MS.gene44007:intron |
| AGTGGTGCAAACCCAAGCAC+CGG | 0.611968 | 1.3:+57358485 | MS.gene44007:CDS |
| AAATATTGGAAGTGATGAGA+TGG | 0.614662 | 1.3:+57357999 | MS.gene44007:CDS |
| TCTAGCCCATACGCATCTTG+TGG | 0.616959 | 1.3:-57357199 | None:intergenic |
| GGAACAACTTGAAAGGGAGA+AGG | 0.619660 | 1.3:+57358425 | MS.gene44007:CDS |
| GCTTGAAGGAGTCTGATGCA+TGG | 0.646402 | 1.3:+57357069 | MS.gene44007:CDS |
| ACCCATTCCACCCATATCAG+CGG | 0.650854 | 1.3:-57356767 | None:intergenic |
| GCGCGGCGTCTCAAGAAGGA+GGG | 0.659404 | 1.3:+57356601 | MS.gene44007:CDS |
| ACAGACAAATTTGAGATGTG+GGG | 0.667327 | 1.3:+57357499 | MS.gene44007:CDS |
| ACATCACATTCCTGGCCCAG+AGG | 0.671457 | 1.3:+57358080 | MS.gene44007:CDS |
| AGGGTAGATACAAGCACTTG+AGG | 0.678133 | 1.3:-57357015 | None:intergenic |
| GATGGTCAGCATGAATGAGA+TGG | 0.684833 | 1.3:+57358017 | MS.gene44007:CDS |
| TGTTATGGAACCTCCCAATG+CGG | 0.724863 | 1.3:-57357279 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAAGTTTTTATCCAATT+TGG | + | chr1.3:57358211-57358230 | MS.gene44007:intron | 15.0% |
| !!! | TTAGTAGATGTTTTTAATTT+TGG | + | chr1.3:57357385-57357404 | MS.gene44007:intron | 15.0% |
| !!! | TTTATTTTTACATTAAGCTT+GGG | + | chr1.3:57357144-57357163 | MS.gene44007:intron | 15.0% |
| !! | ATACATAATAACAGAATGAT+TGG | - | chr1.3:57356803-57356822 | None:intergenic | 20.0% |
| !! | ATTCATTAAAGTCAAACAAT+AGG | - | chr1.3:57358320-57358339 | None:intergenic | 20.0% |
| !! | CAAAATCACTAATATTTGTT+CGG | - | chr1.3:57356921-57356940 | None:intergenic | 20.0% |
| !! | GACTTTAATGAATATTCAAA+GGG | + | chr1.3:57358327-57358346 | MS.gene44007:intron | 20.0% |
| !! | TGACTTTAATGAATATTCAA+AGG | + | chr1.3:57358326-57358345 | MS.gene44007:intron | 20.0% |
| !! | TTTCTAACTGTTTAAATTCA+GGG | - | chr1.3:57357037-57357056 | None:intergenic | 20.0% |
| !!! | ATAATTTTAGTATCCGTAAT+TGG | + | chr1.3:57357842-57357861 | MS.gene44007:intron | 20.0% |
| !!! | CTTTATTTTTACATTAAGCT+TGG | + | chr1.3:57357143-57357162 | MS.gene44007:intron | 20.0% |
| !!! | GAATTATAATTTTGAGCTTA+TGG | + | chr1.3:57357657-57357676 | MS.gene44007:intron | 20.0% |
| ! | AAAAAACACATGAATAAAGC+TGG | - | chr1.3:57357618-57357637 | None:intergenic | 25.0% |
| ! | ACACTAATAAAAGAGAAACT+TGG | + | chr1.3:57358129-57358148 | MS.gene44007:CDS | 25.0% |
| ! | ACATGAAAAGTTTGGTTAAA+TGG | - | chr1.3:57357707-57357726 | None:intergenic | 25.0% |
| ! | ACTAATATTTGTTCGGTTAT+AGG | - | chr1.3:57356914-57356933 | None:intergenic | 25.0% |
| ! | GTTTCTAACTGTTTAAATTC+AGG | - | chr1.3:57357038-57357057 | None:intergenic | 25.0% |
| ! | TATCTAAATTCTGGTATTGT+AGG | + | chr1.3:57358371-57358390 | MS.gene44007:intron | 25.0% |
| ! | TTAAAGTCAAACAATAGGAA+AGG | - | chr1.3:57358315-57358334 | None:intergenic | 25.0% |
| ! | TTATTAAGACACAAGAAAGA+AGG | - | chr1.3:57358197-57358216 | None:intergenic | 25.0% |
| !! | AAACAAACATTTTTCGCAAT+TGG | - | chr1.3:57356979-57356998 | None:intergenic | 25.0% |
| !! | GAAATTTTAAGCTTTTCTGA+TGG | - | chr1.3:57356544-57356563 | None:intergenic | 25.0% |
| !!! | CATCTACTAATTTGCTTATT+CGG | - | chr1.3:57357375-57357394 | None:intergenic | 25.0% |
| !!! | GAAAGTGTAATGGAATTTTT+AGG | + | chr1.3:57358252-57358271 | MS.gene44007:intron | 25.0% |
| AAATATTGGAAGTGATGAGA+TGG | + | chr1.3:57357999-57358018 | MS.gene44007:CDS | 30.0% | |
| AAATGCATCAAACAACCAAA+AGG | - | chr1.3:57357118-57357137 | None:intergenic | 30.0% | |
| AAATTCTGGTATTGTAGGAT+GGG | + | chr1.3:57358376-57358395 | MS.gene44007:intron | 30.0% | |
| AAGCACTACAACAAAGATTT+CGG | + | chr1.3:57357247-57357266 | MS.gene44007:CDS | 30.0% | |
| AAGCTTAAAATTTCCATCAC+TGG | + | chr1.3:57356550-57356569 | MS.gene44007:CDS | 30.0% | |
| AATAAAAGAGAAACTTGGCT+GGG | + | chr1.3:57358134-57358153 | MS.gene44007:CDS | 30.0% | |
| ATTACATTATTGCTTCTGAC+TGG | + | chr1.3:57356626-57356645 | MS.gene44007:CDS | 30.0% | |
| ATTGCATAAATGACATTGAG+AGG | + | chr1.3:57357804-57357823 | MS.gene44007:intron | 30.0% | |
| CAAAAGGACCATATATGTTA+TGG | - | chr1.3:57357297-57357316 | None:intergenic | 30.0% | |
| CTAGGATTAATGGAATTAAG+AGG | + | chr1.3:57356860-57356879 | MS.gene44007:CDS | 30.0% | |
| GATTAAGGAACAACTTGAAA+GGG | + | chr1.3:57358419-57358438 | MS.gene44007:CDS | 30.0% | |
| GATTACATATGTCTGGATTA+AGG | + | chr1.3:57358404-57358423 | MS.gene44007:CDS | 30.0% | |
| TAAATTCTGGTATTGTAGGA+TGG | + | chr1.3:57358375-57358394 | MS.gene44007:intron | 30.0% | |
| TAATAAAAGAGAAACTTGGC+TGG | + | chr1.3:57358133-57358152 | MS.gene44007:CDS | 30.0% | |
| TATACCTTCAACTTCATTGT+TGG | - | chr1.3:57358162-57358181 | None:intergenic | 30.0% | |
| TCATCACTTCCAATATTTAC+CGG | - | chr1.3:57357997-57358016 | None:intergenic | 30.0% | |
| TTACAGCAGTATCTAAATTC+TGG | + | chr1.3:57358362-57358381 | MS.gene44007:intron | 30.0% | |
| TTTAGTATCCGTAATTGGTT+GGG | + | chr1.3:57357847-57357866 | MS.gene44007:intron | 30.0% | |
| ! | AGTACTGGAAAAACTAACTA+TGG | + | chr1.3:57356478-57356497 | MS.gene44007:CDS | 30.0% |
| ! | CATAACATATATGGTCCTTT+TGG | + | chr1.3:57357295-57357314 | MS.gene44007:CDS | 30.0% |
| ! | TACAGACAAATTTGAGATGT+GGG | + | chr1.3:57357498-57357517 | MS.gene44007:CDS | 30.0% |
| ! | TATCTGACACATCATGTTTT+TGG | + | chr1.3:57356887-57356906 | MS.gene44007:intron | 30.0% |
| ! | TCTTCTTTCAGAAAGTGTAA+TGG | + | chr1.3:57358242-57358261 | MS.gene44007:intron | 30.0% |
| ! | TTTGGTTGTTTGATGCATTT+TGG | + | chr1.3:57357118-57357137 | MS.gene44007:intron | 30.0% |
| ! | TTTTAGTATCCGTAATTGGT+TGG | + | chr1.3:57357846-57357865 | MS.gene44007:intron | 30.0% |
| !! | GCGAAAAATGTTTGTTTTTC+AGG | + | chr1.3:57356982-57357001 | MS.gene44007:intron | 30.0% |
| AACAACAGACCAAATTGTCA+GGG | - | chr1.3:57357941-57357960 | None:intergenic | 35.0% | |
| AACTACTAATGTCAGCTTGA+AGG | + | chr1.3:57357055-57357074 | MS.gene44007:CDS | 35.0% | |
| AACTGCTTAACGGTTACTAA+AGG | + | chr1.3:57356721-57356740 | MS.gene44007:CDS | 35.0% | |
| AATTCCATCTTGTTGATCTC+AGG | + | chr1.3:57356689-57356708 | MS.gene44007:CDS | 35.0% | |
| ACTGCTTAACGGTTACTAAA+GGG | + | chr1.3:57356722-57356741 | MS.gene44007:CDS | 35.0% | |
| ATACCTTTCCATGTTCCAAA+AGG | - | chr1.3:57357313-57357332 | None:intergenic | 35.0% | |
| ATTCCATCTTGTTGATCTCA+GGG | + | chr1.3:57356690-57356709 | MS.gene44007:CDS | 35.0% | |
| ATTGAAGCTGCTAGGATTAA+TGG | + | chr1.3:57356850-57356869 | MS.gene44007:CDS | 35.0% | |
| CAGCTCAAACATGAAAAGTT+TGG | - | chr1.3:57357715-57357734 | None:intergenic | 35.0% | |
| GGATTAAGGAACAACTTGAA+AGG | + | chr1.3:57358418-57358437 | MS.gene44007:CDS | 35.0% | |
| TAACAACAGACCAAATTGTC+AGG | - | chr1.3:57357942-57357961 | None:intergenic | 35.0% | |
| TAAGACACAAGAAAGAAGGA+AGG | - | chr1.3:57358193-57358212 | None:intergenic | 35.0% | |
| TATGATAAGCCCTGACAATT+TGG | + | chr1.3:57357929-57357948 | MS.gene44007:intron | 35.0% | |
| TCAATATGATTGAAGCTGCT+AGG | + | chr1.3:57356842-57356861 | MS.gene44007:CDS | 35.0% | |
| TCATGTTTGAGCTGTTCTAA+GGG | + | chr1.3:57357721-57357740 | MS.gene44007:intron | 35.0% | |
| TTCAACACACTCATCAATGA+AGG | - | chr1.3:57357551-57357570 | None:intergenic | 35.0% | |
| TTCATGTTTGAGCTGTTCTA+AGG | + | chr1.3:57357720-57357739 | MS.gene44007:intron | 35.0% | |
| TTCATTGATGAGTGTGTTGA+AGG | + | chr1.3:57357550-57357569 | MS.gene44007:CDS | 35.0% | |
| TTGGGATAGGGAAAATGATA+CGG | + | chr1.3:57357865-57357884 | MS.gene44007:intron | 35.0% | |
| ! | ACAGACAAATTTGAGATGTG+GGG | + | chr1.3:57357499-57357518 | MS.gene44007:CDS | 35.0% |
| ! | CACTTTCTGAAAGAAGATGA+AGG | - | chr1.3:57358239-57358258 | None:intergenic | 35.0% |
| ! | CTACAGACAAATTTGAGATG+TGG | + | chr1.3:57357497-57357516 | MS.gene44007:CDS | 35.0% |
| !! | AGTTTGTTGCTTTGTCATAC+AGG | + | chr1.3:57357427-57357446 | MS.gene44007:intron | 35.0% |
| !!! | TATATGGTCCTTTTGGAACA+TGG | + | chr1.3:57357302-57357321 | MS.gene44007:CDS | 35.0% |
| AAAATTTCCATCACTGGTGC+TGG | + | chr1.3:57356556-57356575 | MS.gene44007:CDS | 40.0% | |
| AAATTTCCATCACTGGTGCT+GGG | + | chr1.3:57356557-57356576 | MS.gene44007:CDS | 40.0% | |
| ACTCCTATACATCACATTCC+TGG | + | chr1.3:57358072-57358091 | MS.gene44007:CDS | 40.0% | |
| AGAAGATGAAGGAGCCAAAT+TGG | - | chr1.3:57358228-57358247 | None:intergenic | 40.0% | |
| ATCCGTAATTGGTTGGGATA+GGG | + | chr1.3:57357853-57357872 | MS.gene44007:intron | 40.0% | |
| CTCTCTCTCAAGATTCTCAT+AGG | - | chr1.3:57356512-57356531 | None:intergenic | 40.0% | |
| CTGCTTAACGGTTACTAAAG+GGG | + | chr1.3:57356723-57356742 | MS.gene44007:CDS | 40.0% | |
| GAAAAATGAGCACATGACTG+AGG | + | chr1.3:57356651-57356670 | MS.gene44007:CDS | 40.0% | |
| GGGAGGTTCCATAACATATA+TGG | + | chr1.3:57357286-57357305 | MS.gene44007:CDS | 40.0% | |
| GGTCATGGATAACTGCTTAA+CGG | + | chr1.3:57356711-57356730 | MS.gene44007:CDS | 40.0% | |
| GGTCTTGATACATCAGGATA+CGG | + | chr1.3:57358453-57358472 | MS.gene44007:CDS | 40.0% | |
| TATCCGTAATTGGTTGGGAT+AGG | + | chr1.3:57357852-57357871 | MS.gene44007:intron | 40.0% | |
| TCTTGGCTGATTGTTTGGTT+TGG | + | chr1.3:57357587-57357606 | MS.gene44007:intron | 40.0% | |
| TTCAATCTTGCCGCTGATAT+GGG | + | chr1.3:57356757-57356776 | MS.gene44007:CDS | 40.0% | |
| TTCCCTATCCCAACCAATTA+CGG | - | chr1.3:57357858-57357877 | None:intergenic | 40.0% | |
| TTTAGCCACAAGATGCGTAT+GGG | + | chr1.3:57357194-57357213 | MS.gene44007:intron | 40.0% | |
| TTTCAATCTTGCCGCTGATA+TGG | + | chr1.3:57356756-57356775 | MS.gene44007:CDS | 40.0% | |
| ! | AAATTTGAGATGTGGGGAGA+TGG | + | chr1.3:57357505-57357524 | MS.gene44007:CDS | 40.0% |
| ! | AGTGTGTTGAAGGTGTACTT+AGG | + | chr1.3:57357560-57357579 | MS.gene44007:CDS | 40.0% |
| ! | TGTTGAAGGTGTACTTAGGT+AGG | + | chr1.3:57357564-57357583 | MS.gene44007:intron | 40.0% |
| ! | TGTTGATTGAGTGAGCTAAC+TGG | - | chr1.3:57357782-57357801 | None:intergenic | 40.0% |
| !! | TTGTTGCTTTGTCATACAGG+TGG | + | chr1.3:57357430-57357449 | MS.gene44007:intron | 40.0% |
| !!! | TGAGATCGTTCTTGGTTTTG+AGG | + | chr1.3:57358041-57358060 | MS.gene44007:CDS | 40.0% |
| AGGATACGGCTCATCAAAAG+TGG | + | chr1.3:57358467-57358486 | MS.gene44007:CDS | 45.0% | |
| AGGGTAGATACAAGCACTTG+AGG | - | chr1.3:57357018-57357037 | None:intergenic | 45.0% | |
| AGGTGTACTTAGGTAGGTCT+TGG | + | chr1.3:57357570-57357589 | MS.gene44007:intron | 45.0% | |
| ATCTTGAGAGAGAGCCTTAC+TGG | + | chr1.3:57356518-57356537 | MS.gene44007:CDS | 45.0% | |
| CAGCGGCAAGATTGAAAACA+TGG | - | chr1.3:57356753-57356772 | None:intergenic | 45.0% | |
| GATGGTCAGCATGAATGAGA+TGG | + | chr1.3:57358017-57358036 | MS.gene44007:CDS | 45.0% | |
| GCTCAAGGTCTTGATACATC+AGG | + | chr1.3:57358447-57358466 | MS.gene44007:CDS | 45.0% | |
| GCTTTGTCATACAGGTGGAA+GGG | + | chr1.3:57357435-57357454 | MS.gene44007:intron | 45.0% | |
| GGAACAACTTGAAAGGGAGA+AGG | + | chr1.3:57358425-57358444 | MS.gene44007:CDS | 45.0% | |
| GGCTCCAACAATGAAGTTGA+AGG | + | chr1.3:57358155-57358174 | MS.gene44007:CDS | 45.0% | |
| GGCTGAGGATTACATATGTC+TGG | + | chr1.3:57358397-57358416 | MS.gene44007:CDS | 45.0% | |
| GTAGGTCTTGGCTGATTGTT+TGG | + | chr1.3:57357582-57357601 | MS.gene44007:intron | 45.0% | |
| GTTTAGCCACAAGATGCGTA+TGG | + | chr1.3:57357193-57357212 | MS.gene44007:intron | 45.0% | |
| TCTTGTTGATCTCAGGGTCA+TGG | + | chr1.3:57356696-57356715 | MS.gene44007:CDS | 45.0% | |
| TGACCCTGAGATCAACAAGA+TGG | - | chr1.3:57356696-57356715 | None:intergenic | 45.0% | |
| TGCTTTGTCATACAGGTGGA+AGG | + | chr1.3:57357434-57357453 | MS.gene44007:intron | 45.0% | |
| TGTTATGGAACCTCCCAATG+CGG | - | chr1.3:57357282-57357301 | None:intergenic | 45.0% | |
| ! | AATTTCCATCACTGGTGCTG+GGG | + | chr1.3:57356558-57356577 | MS.gene44007:CDS | 45.0% |
| ! | AGCTTTTCTGATGGCCAGTA+AGG | - | chr1.3:57356535-57356554 | None:intergenic | 45.0% |
| !! | GGTTTGTTCGCGATTCCTTT+TGG | + | chr1.3:57357100-57357119 | MS.gene44007:intron | 45.0% |
| !! | TTCCAATATTTACCGGCTCG+CGG | - | chr1.3:57357990-57358009 | None:intergenic | 45.0% |
| !!! | GGTCCTTTTGGAACATGGAA+AGG | + | chr1.3:57357307-57357326 | MS.gene44007:CDS | 45.0% |
| AATCGCGAACAAACCTCAGC+AGG | - | chr1.3:57357095-57357114 | None:intergenic | 50.0% | |
| AATCTTGCCGCTGATATGGG+TGG | + | chr1.3:57356760-57356779 | MS.gene44007:CDS | 50.0% | |
| ACCCATTCCACCCATATCAG+CGG | - | chr1.3:57356770-57356789 | None:intergenic | 50.0% | |
| CGAAGTGAGCCTAATTGGAC+CGG | - | chr1.3:57358507-57358526 | None:intergenic | 50.0% | |
| CGGTCCAATTAGGCTCACTT+CGG | + | chr1.3:57358505-57358524 | MS.gene44007:CDS | 50.0% | |
| CTTGAAAGGGAGAAGGCTCA+AGG | + | chr1.3:57358432-57358451 | MS.gene44007:CDS | 50.0% | |
| GAGATGGCTGAGATCGTTCT+TGG | + | chr1.3:57358033-57358052 | MS.gene44007:CDS | 50.0% | |
| GCTAGAGAAGCTTGCAACAG+AGG | + | chr1.3:57357216-57357235 | MS.gene44007:CDS | 50.0% | |
| GCTTGAAGGAGTCTGATGCA+TGG | + | chr1.3:57357069-57357088 | MS.gene44007:CDS | 50.0% | |
| GCTTTCCGACAAAAAGCAGC+AGG | - | chr1.3:57357469-57357488 | None:intergenic | 50.0% | |
| GGGCCAGGAATGTGATGTAT+AGG | - | chr1.3:57358078-57358097 | None:intergenic | 50.0% | |
| GGTCCAATTAGGCTCACTTC+GGG | + | chr1.3:57358506-57358525 | MS.gene44007:CDS | 50.0% | |
| TAAATCCGATTTCCGCGAGC+CGG | + | chr1.3:57357975-57357994 | MS.gene44007:CDS | 50.0% | |
| TCATACAGGTGGAAGGGAGA+AGG | + | chr1.3:57357441-57357460 | MS.gene44007:intron | 50.0% | |
| TCTAGCCCATACGCATCTTG+TGG | - | chr1.3:57357202-57357221 | None:intergenic | 50.0% | |
| TTCCGCGAGCCGGTAAATAT+TGG | + | chr1.3:57357985-57358004 | MS.gene44007:CDS | 50.0% | |
| ! | ATTTCCATCACTGGTGCTGG+GGG | + | chr1.3:57356559-57356578 | MS.gene44007:CDS | 50.0% |
| ! | TCGGAATTGAGTGCCGCATT+GGG | + | chr1.3:57357266-57357285 | MS.gene44007:CDS | 50.0% |
| ! | TTCGGAATTGAGTGCCGCAT+TGG | + | chr1.3:57357265-57357284 | MS.gene44007:CDS | 50.0% |
| !! | ATTTACCGGCTCGCGGAAAT+CGG | - | chr1.3:57357983-57358002 | None:intergenic | 50.0% |
| !! | TGGTATTGTAGGATGGGCTG+AGG | + | chr1.3:57358382-57358401 | MS.gene44007:intron | 50.0% |
| !!! | AGGCTCCTGCTGCTTTTTGT+CGG | + | chr1.3:57357461-57357480 | MS.gene44007:CDS | 50.0% |
| AAAACCCCCAGCACCAGTGA+TGG | - | chr1.3:57356566-57356585 | None:intergenic | 55.0% | |
| ACATCACATTCCTGGCCCAG+AGG | + | chr1.3:57358080-57358099 | MS.gene44007:CDS | 55.0% | |
| AGCCTAATTGGACCGGTGCT+TGG | - | chr1.3:57358500-57358519 | None:intergenic | 55.0% | |
| AGTGGTGCAAACCCAAGCAC+CGG | + | chr1.3:57358485-57358504 | MS.gene44007:CDS | 55.0% | |
| CATCACATTCCTGGCCCAGA+GGG | + | chr1.3:57358081-57358100 | MS.gene44007:CDS | 55.0% | |
| CTGCCCGAAGTGAGCCTAAT+TGG | - | chr1.3:57358512-57358531 | None:intergenic | 55.0% | |
| GCCGCTGATATGGGTGGAAT+GGG | + | chr1.3:57356766-57356785 | MS.gene44007:CDS | 55.0% | |
| GCCTAATTGGACCGGTGCTT+GGG | - | chr1.3:57358499-57358518 | None:intergenic | 55.0% | |
| TACGACCACGAACACCCTCT+GGG | - | chr1.3:57358098-57358117 | None:intergenic | 55.0% | |
| TGCCGCTGATATGGGTGGAA+TGG | + | chr1.3:57356765-57356784 | MS.gene44007:CDS | 55.0% | |
| TTACGACCACGAACACCCTC+TGG | - | chr1.3:57358099-57358118 | None:intergenic | 55.0% | |
| TTATCGCGTCGCACTTAGCG+CGG | + | chr1.3:57356584-57356603 | MS.gene44007:CDS | 55.0% | |
| ! | GAATTGAGTGCCGCATTGGG+AGG | + | chr1.3:57357269-57357288 | MS.gene44007:CDS | 55.0% |
| !! | ACCCAAGCACCGGTCCAATT+AGG | + | chr1.3:57358495-57358514 | MS.gene44007:CDS | 55.0% |
| CTTAGCGCGGCGTCTCAAGA+AGG | + | chr1.3:57356597-57356616 | MS.gene44007:CDS | 60.0% | |
| GTCTGATGCATGGCCTGCTG+AGG | + | chr1.3:57357079-57357098 | MS.gene44007:CDS | 60.0% | |
| AGCGCGGCGTCTCAAGAAGG+AGG | + | chr1.3:57356600-57356619 | MS.gene44007:CDS | 65.0% | |
| GCGCGGCGTCTCAAGAAGGA+GGG | + | chr1.3:57356601-57356620 | MS.gene44007:CDS | 65.0% | |
| GGCTCACTTCGGGCAGCAGA+CGG | + | chr1.3:57358516-57358535 | MS.gene44007:CDS | 65.0% | |
| CCACGAACACCCTCTGGGCC+AGG | - | chr1.3:57358093-57358112 | None:intergenic | 70.0% | |
| !! | CCTGGCCCAGAGGGTGTTCG+TGG | + | chr1.3:57358090-57358109 | MS.gene44007:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57356472 | 57358554 | 57356472 | ID=MS.gene44007 |
| chr1.3 | mRNA | 57356472 | 57358554 | 57356472 | ID=MS.gene44007.t1;Parent=MS.gene44007 |
| chr1.3 | exon | 57356472 | 57356881 | 57356472 | ID=MS.gene44007.t1.exon1;Parent=MS.gene44007.t1 |
| chr1.3 | CDS | 57356472 | 57356881 | 57356472 | ID=cds.MS.gene44007.t1;Parent=MS.gene44007.t1 |
| chr1.3 | exon | 57357004 | 57357100 | 57357004 | ID=MS.gene44007.t1.exon2;Parent=MS.gene44007.t1 |
| chr1.3 | CDS | 57357004 | 57357100 | 57357004 | ID=cds.MS.gene44007.t1;Parent=MS.gene44007.t1 |
| chr1.3 | exon | 57357199 | 57357328 | 57357199 | ID=MS.gene44007.t1.exon3;Parent=MS.gene44007.t1 |
| chr1.3 | CDS | 57357199 | 57357328 | 57357199 | ID=cds.MS.gene44007.t1;Parent=MS.gene44007.t1 |
| chr1.3 | exon | 57357449 | 57357581 | 57357449 | ID=MS.gene44007.t1.exon4;Parent=MS.gene44007.t1 |
| chr1.3 | CDS | 57357449 | 57357581 | 57357449 | ID=cds.MS.gene44007.t1;Parent=MS.gene44007.t1 |
| chr1.3 | exon | 57357969 | 57358176 | 57357969 | ID=MS.gene44007.t1.exon5;Parent=MS.gene44007.t1 |
| chr1.3 | CDS | 57357969 | 57358176 | 57357969 | ID=cds.MS.gene44007.t1;Parent=MS.gene44007.t1 |
| chr1.3 | exon | 57358393 | 57358554 | 57358393 | ID=MS.gene44007.t1.exon6;Parent=MS.gene44007.t1 |
| chr1.3 | CDS | 57358393 | 57358554 | 57358393 | ID=cds.MS.gene44007.t1;Parent=MS.gene44007.t1 |
| Gene Sequence |
| Protein sequence |
