Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96284.t1 | XP_003610518.1 | 89.3 | 214 | 9 | 4 | 4 | 216 | 1 | 201 | 4.70E-76 | 294.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96284.t1 | G7JKI8 | 89.3 | 214 | 9 | 4 | 4 | 216 | 1 | 201 | 3.4e-76 | 294.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene96284 | 0.816918 | 4.32E-52 | -1.69E-46 |
| MS.gene049260 | MS.gene96284 | 0.838139 | 3.43E-57 | -1.69E-46 |
| MS.gene049297 | MS.gene96284 | 0.821452 | 4.01E-53 | -1.69E-46 |
| MS.gene049346 | MS.gene96284 | 0.805361 | 1.39E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene96284 | 0.819101 | 1.39E-52 | -1.69E-46 |
| MS.gene049599 | MS.gene96284 | -0.826027 | 3.40E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene96284 | 0.905245 | 5.26E-80 | -1.69E-46 |
| MS.gene049915 | MS.gene96284 | 0.824263 | 8.87E-54 | -1.69E-46 |
| MS.gene050076 | MS.gene96284 | 0.803389 | 3.57E-49 | -1.69E-46 |
| MS.gene050099 | MS.gene96284 | 0.822798 | 1.95E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene96284 | 0.85515 | 7.65E-62 | -1.69E-46 |
| MS.gene050226 | MS.gene96284 | 0.822576 | 2.20E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene96284 | 0.818914 | 1.53E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene96284 | 0.808586 | 2.88E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene96284 | 0.861382 | 1.07E-63 | -1.69E-46 |
| MS.gene050330 | MS.gene96284 | -0.807038 | 6.14E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene96284 | 0.809213 | 2.11E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene96284 | 0.814964 | 1.18E-51 | -1.69E-46 |
| MS.gene050558 | MS.gene96284 | 0.830924 | 2.23E-55 | -1.69E-46 |
| MS.gene050623 | MS.gene96284 | -0.847907 | 8.59E-60 | -1.69E-46 |
| MS.gene050642 | MS.gene96284 | 0.845238 | 4.60E-59 | -1.69E-46 |
| MS.gene050762 | MS.gene96284 | 0.832541 | 8.91E-56 | -1.69E-46 |
| MS.gene050763 | MS.gene96284 | 0.832682 | 8.22E-56 | -1.69E-46 |
| MS.gene050987 | MS.gene96284 | 0.815332 | 9.76E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene96284 | 0.80621 | 9.19E-50 | -1.69E-46 |
| MS.gene05119 | MS.gene96284 | -0.840724 | 7.32E-58 | -1.69E-46 |
| MS.gene051471 | MS.gene96284 | 0.824254 | 8.92E-54 | -1.69E-46 |
| MS.gene051535 | MS.gene96284 | 0.806771 | 7.00E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene96284 | 0.881474 | 2.33E-70 | -1.69E-46 |
| MS.gene051663 | MS.gene96284 | 0.880659 | 4.57E-70 | -1.69E-46 |
| MS.gene051860 | MS.gene96284 | 0.834233 | 3.37E-56 | -1.69E-46 |
| MS.gene051983 | MS.gene96284 | 0.837902 | 3.95E-57 | -1.69E-46 |
| MS.gene052077 | MS.gene96284 | 0.826909 | 2.09E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene96284 | 0.840426 | 8.76E-58 | -1.69E-46 |
| MS.gene052115 | MS.gene96284 | 0.80262 | 5.15E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene96284 | 0.831426 | 1.68E-55 | -1.69E-46 |
| MS.gene052178 | MS.gene96284 | 0.850584 | 1.54E-60 | -1.69E-46 |
| MS.gene052188 | MS.gene96284 | 0.831621 | 1.50E-55 | -1.69E-46 |
| MS.gene052207 | MS.gene96284 | 0.809816 | 1.57E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene96284 | 0.826539 | 2.57E-54 | -1.69E-46 |
| MS.gene052309 | MS.gene96284 | -0.828302 | 9.70E-55 | -1.69E-46 |
| MS.gene052326 | MS.gene96284 | 0.812857 | 3.43E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene96284 | 0.836708 | 7.99E-57 | -1.69E-46 |
| MS.gene052376 | MS.gene96284 | 0.818176 | 2.25E-52 | -1.69E-46 |
| MS.gene052600 | MS.gene96284 | 0.811693 | 6.16E-51 | -1.69E-46 |
| MS.gene053073 | MS.gene96284 | 0.80336 | 3.62E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene96284 | 0.808033 | 3.78E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene96284 | 0.806777 | 6.98E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene96284 | 0.822858 | 1.89E-53 | -1.69E-46 |
| MS.gene053559 | MS.gene96284 | 0.830246 | 3.27E-55 | -1.69E-46 |
| MS.gene053630 | MS.gene96284 | 0.805994 | 1.02E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene96284 | 0.895984 | 5.70E-76 | -1.69E-46 |
| MS.gene053907 | MS.gene96284 | 0.823253 | 1.53E-53 | -1.69E-46 |
| MS.gene053928 | MS.gene96284 | 0.813295 | 2.75E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene96284 | 0.805317 | 1.41E-49 | -1.69E-46 |
| MS.gene054214 | MS.gene96284 | 0.803231 | 3.85E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene96284 | 0.826378 | 2.80E-54 | -1.69E-46 |
| MS.gene054473 | MS.gene96284 | 0.825757 | 3.94E-54 | -1.69E-46 |
| MS.gene054542 | MS.gene96284 | 0.813866 | 2.06E-51 | -1.69E-46 |
| MS.gene054667 | MS.gene96284 | 0.817183 | 3.76E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene96284 | 0.867 | 1.89E-65 | -1.69E-46 |
| MS.gene054942 | MS.gene96284 | 0.837826 | 4.13E-57 | -1.69E-46 |
| MS.gene054983 | MS.gene96284 | 0.834761 | 2.49E-56 | -1.69E-46 |
| MS.gene055133 | MS.gene96284 | 0.834299 | 3.25E-56 | -1.69E-46 |
| MS.gene055277 | MS.gene96284 | 0.855441 | 6.29E-62 | -1.69E-46 |
| MS.gene055390 | MS.gene96284 | 0.817599 | 3.03E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene96284 | 0.877786 | 4.75E-69 | -1.69E-46 |
| MS.gene055428 | MS.gene96284 | 0.855694 | 5.31E-62 | -1.69E-46 |
| MS.gene055604 | MS.gene96284 | 0.834038 | 3.77E-56 | -1.69E-46 |
| MS.gene055712 | MS.gene96284 | 0.838233 | 3.25E-57 | -1.69E-46 |
| MS.gene055859 | MS.gene96284 | 0.802104 | 6.57E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene96284 | -0.845796 | 3.25E-59 | -1.69E-46 |
| MS.gene056314 | MS.gene96284 | 0.809347 | 1.98E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene96284 | 0.800185 | 1.62E-48 | -1.69E-46 |
| MS.gene056612 | MS.gene96284 | 0.865706 | 4.86E-65 | -1.69E-46 |
| MS.gene056772 | MS.gene96284 | 0.813276 | 2.78E-51 | -1.69E-46 |
| MS.gene056875 | MS.gene96284 | 0.828102 | 1.08E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene96284 | 0.822926 | 1.82E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene96284 | 0.838889 | 2.20E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene96284 | 0.828746 | 7.57E-55 | -1.69E-46 |
| MS.gene057245 | MS.gene96284 | 0.807248 | 5.55E-50 | -1.69E-46 |
| MS.gene057260 | MS.gene96284 | 0.83654 | 8.82E-57 | -1.69E-46 |
| MS.gene057439 | MS.gene96284 | 0.889244 | 2.88E-73 | -1.69E-46 |
| MS.gene057448 | MS.gene96284 | 0.809617 | 1.73E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene96284 | 0.821616 | 3.67E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene96284 | 0.80232 | 5.93E-49 | -1.69E-46 |
| MS.gene057754 | MS.gene96284 | 0.835433 | 1.68E-56 | -1.69E-46 |
| MS.gene057794 | MS.gene96284 | 0.81511 | 1.09E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene96284 | 0.85862 | 7.27E-63 | -1.69E-46 |
| MS.gene058082 | MS.gene96284 | 0.848111 | 7.55E-60 | -1.69E-46 |
| MS.gene05811 | MS.gene96284 | 0.85693 | 2.31E-62 | -1.69E-46 |
| MS.gene058142 | MS.gene96284 | 0.823788 | 1.15E-53 | -1.69E-46 |
| MS.gene058182 | MS.gene96284 | 0.827113 | 1.87E-54 | -1.69E-46 |
| MS.gene058201 | MS.gene96284 | 0.827136 | 1.85E-54 | -1.69E-46 |
| MS.gene058365 | MS.gene96284 | 0.805704 | 1.17E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene96284 | 0.814592 | 1.42E-51 | -1.69E-46 |
| MS.gene058661 | MS.gene96284 | -0.812238 | 4.69E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene96284 | 0.823784 | 1.15E-53 | -1.69E-46 |
| MS.gene058749 | MS.gene96284 | 0.864408 | 1.24E-64 | -1.69E-46 |
| MS.gene058833 | MS.gene96284 | 0.811137 | 8.14E-51 | -1.69E-46 |
| MS.gene058845 | MS.gene96284 | 0.856168 | 3.86E-62 | -1.69E-46 |
| MS.gene059033 | MS.gene96284 | -0.801779 | 7.66E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene96284 | 0.837453 | 5.15E-57 | -1.69E-46 |
| MS.gene059285 | MS.gene96284 | 0.820565 | 6.41E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene96284 | 0.847592 | 1.05E-59 | -1.69E-46 |
| MS.gene059597 | MS.gene96284 | 0.836851 | 7.34E-57 | -1.69E-46 |
| MS.gene059676 | MS.gene96284 | 0.811241 | 7.73E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene96284 | 0.815412 | 9.37E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene96284 | 0.811037 | 8.55E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene96284 | 0.86633 | 3.08E-65 | -1.69E-46 |
| MS.gene059894 | MS.gene96284 | 0.876107 | 1.82E-68 | -1.69E-46 |
| MS.gene059899 | MS.gene96284 | 0.878924 | 1.89E-69 | -1.69E-46 |
| MS.gene060084 | MS.gene96284 | 0.846458 | 2.14E-59 | -1.69E-46 |
| MS.gene06037 | MS.gene96284 | 0.839337 | 1.68E-57 | -1.69E-46 |
| MS.gene060476 | MS.gene96284 | 0.866752 | 2.27E-65 | -1.69E-46 |
| MS.gene060495 | MS.gene96284 | 0.823204 | 1.57E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene96284 | 0.883365 | 4.77E-71 | -1.69E-46 |
| MS.gene061051 | MS.gene96284 | -0.817646 | 2.96E-52 | -1.69E-46 |
| MS.gene061112 | MS.gene96284 | 0.814706 | 1.34E-51 | -1.69E-46 |
| MS.gene061113 | MS.gene96284 | 0.810516 | 1.11E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene96284 | 0.815625 | 8.40E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96284.t1 | MTR_4g133070 | 88.785 | 214 | 10 | 4 | 4 | 216 | 1 | 201 | 4.51e-109 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96284.t1 | AT5G20130 | 51.807 | 166 | 74 | 3 | 52 | 216 | 42 | 202 | 3.70e-41 | 139 |
| MS.gene96284.t1 | AT5G20130 | 51.807 | 166 | 74 | 3 | 52 | 216 | 71 | 231 | 1.79e-40 | 138 |
Find 57 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGTTTGGGTGGGGTAGA+TGG | 0.204366 | 8.4:+1355571 | MS.gene96284:CDS |
| CTGGAGGAGGTTGGTTTGGG+TGG | 0.219431 | 8.4:+1355562 | MS.gene96284:CDS |
| AAGAGAGCGTTGTAAGAAAA+TGG | 0.252399 | 8.4:+1355971 | MS.gene96284:CDS |
| TCCATTGCTGTATGCACTTC+GGG | 0.261348 | 8.4:+1355831 | MS.gene96284:CDS |
| GTGCTGGAGGAGGTTGGTTT+GGG | 0.308879 | 8.4:+1355559 | MS.gene96284:CDS |
| GGTGCTGGAGGAGGTTGGTT+TGG | 0.312842 | 8.4:+1355558 | MS.gene96284:CDS |
| TGGAGGAGGTTGGTTTGGGT+GGG | 0.343284 | 8.4:+1355563 | MS.gene96284:CDS |
| GGAGGAGGTTGGTTTGGGTG+GGG | 0.346451 | 8.4:+1355564 | MS.gene96284:CDS |
| TTTGGGTGGGGTAGATGGTT+TGG | 0.362531 | 8.4:+1355576 | MS.gene96284:CDS |
| GCTGCTTAGTCGTCGTCAAT+TGG | 0.383421 | 8.4:-1354600 | None:intergenic |
| TTCAAAGAGCCATCAAAATC+AGG | 0.393603 | 8.4:-1355919 | None:intergenic |
| GGAGGTGACAGCGGCGGTGC+TGG | 0.396880 | 8.4:+1355543 | MS.gene96284:CDS |
| AGAGAGCGTTGTAAGAAAAT+GGG | 0.401097 | 8.4:+1355972 | MS.gene96284:CDS |
| CGGGGAGTGAGAAATGGATT+TGG | 0.413388 | 8.4:+1355850 | MS.gene96284:CDS |
| AATCAAAAGACGAGAAGAGC+TGG | 0.418830 | 8.4:+1355515 | MS.gene96284:CDS |
| AACGATGGCGTGACCTGATT+AGG | 0.420437 | 8.4:-1354576 | None:intergenic |
| CAAGCTAGTCTTACTATACT+TGG | 0.438781 | 8.4:+1355636 | MS.gene96284:CDS |
| TCCCGTATTCAATCCTAATC+AGG | 0.439070 | 8.4:+1354563 | MS.gene96284:CDS |
| CGAGAAGAGCTGGGAGGCGG+AGG | 0.440547 | 8.4:+1355525 | MS.gene96284:CDS |
| CTGCTTAGTCGTCGTCAATT+GGG | 0.460767 | 8.4:-1354599 | None:intergenic |
| GACAGCGGCGGTGCTGGAGG+AGG | 0.464114 | 8.4:+1355549 | MS.gene96284:CDS |
| GCACTTCGGGGAGTGAGAAA+TGG | 0.464500 | 8.4:+1355844 | MS.gene96284:CDS |
| GGTGGGGTAGATGGTTTGGC+TGG | 0.477513 | 8.4:+1355580 | MS.gene96284:CDS |
| AGAAAATTGAATTTGACAAG+TGG | 0.484614 | 8.4:+1355484 | MS.gene96284:CDS |
| ATCCATTGCTGTATGCACTT+CGG | 0.485612 | 8.4:+1355830 | MS.gene96284:CDS |
| CAGTATATCCTAGTTGCAAA+AGG | 0.489427 | 8.4:+1355781 | MS.gene96284:intron |
| TTGAATACGGGACTCCTCCT+AGG | 0.496159 | 8.4:-1354552 | None:intergenic |
| GACCTGATTAGGATTGAATA+CGG | 0.498106 | 8.4:-1354565 | None:intergenic |
| GGTGACAGCGGCGGTGCTGG+AGG | 0.514884 | 8.4:+1355546 | MS.gene96284:CDS |
| GAAAATTGAATTTGACAAGT+GGG | 0.514902 | 8.4:+1355485 | MS.gene96284:CDS |
| AGACGAGAAGAGCTGGGAGG+CGG | 0.517079 | 8.4:+1355522 | MS.gene96284:CDS |
| GCGGCGGTGCTGGAGGAGGT+TGG | 0.517578 | 8.4:+1355553 | MS.gene96284:CDS |
| AGAGGCAGGTGAATCTGCTT+CGG | 0.520608 | 8.4:-1354681 | None:intergenic |
| GCATTGGAAGGTGCATTAAG+TGG | 0.525308 | 8.4:+1355459 | MS.gene96284:CDS |
| GGATCAAGCTAGAAAAGCAT+TGG | 0.529686 | 8.4:+1355443 | MS.gene96284:intron |
| GATGGCTCTTTGAAGAAGGA+AGG | 0.548351 | 8.4:+1355928 | MS.gene96284:CDS |
| GTTGTTGTCTGAGAAGAGGC+AGG | 0.558606 | 8.4:-1354695 | None:intergenic |
| GAGAGCGTTGTAAGAAAATG+GGG | 0.569827 | 8.4:+1355973 | MS.gene96284:CDS |
| CTGGGAGGCGGAGGTGACAG+CGG | 0.571119 | 8.4:+1355534 | MS.gene96284:CDS |
| GGAGGCGGAGGTGACAGCGG+CGG | 0.580483 | 8.4:+1355537 | MS.gene96284:CDS |
| AAGTGGAGGAATGGAAAGCA+TGG | 0.580913 | 8.4:+1354516 | None:intergenic |
| ATCAAAAGACGAGAAGAGCT+GGG | 0.583730 | 8.4:+1355516 | MS.gene96284:CDS |
| CCCCGAAGTGCATACAGCAA+TGG | 0.590470 | 8.4:-1355832 | None:intergenic |
| GCAGGTGAATCTGCTTCGGT+TGG | 0.595607 | 8.4:-1354677 | None:intergenic |
| AACTGAGTTTGTGCTGTAAG+CGG | 0.600011 | 8.4:-1354651 | None:intergenic |
| CATTGGAAGGTGCATTAAGT+GGG | 0.609653 | 8.4:+1355460 | MS.gene96284:CDS |
| ATGGGAGCAATTGTAAACCT+AGG | 0.620327 | 8.4:+1354535 | MS.gene96284:CDS |
| ACCTGATTAGGATTGAATAC+GGG | 0.620878 | 8.4:-1354564 | None:intergenic |
| CAAGCTAGAAAAGCATTGGA+AGG | 0.624701 | 8.4:+1355447 | MS.gene96284:CDS |
| AGTGGAGGAATGGAAAGCAT+GGG | 0.629305 | 8.4:+1354517 | None:intergenic |
| TCGTCGTCAATTGGGAACGA+TGG | 0.631589 | 8.4:-1354591 | None:intergenic |
| ATACAGCAATGGATTGATGA+TGG | 0.639169 | 8.4:-1355821 | None:intergenic |
| CTCAGACAACAACAAAAGAG+AGG | 0.641852 | 8.4:+1354705 | MS.gene96284:CDS |
| GGAGCAATTGTAAACCTAGG+AGG | 0.664395 | 8.4:+1354538 | MS.gene96284:CDS |
| CCATTGCTGTATGCACTTCG+GGG | 0.665878 | 8.4:+1355832 | MS.gene96284:CDS |
| ATGGATTGATGATGGCAGCG+AGG | 0.723355 | 8.4:-1355813 | None:intergenic |
| AAAAGACGAGAAGAGCTGGG+AGG | 0.769117 | 8.4:+1355519 | MS.gene96284:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCCATATATTTATTATT+AGG | - | chr8.4:1355039-1355058 | None:intergenic | 10.0% |
| !!! | TTTATCTTAATTTATTTTGT+TGG | + | chr8.4:1355138-1355157 | MS.gene96284:intron | 10.0% |
| !! | AAGTTGTATCTTATTATATT+CGG | - | chr8.4:1354981-1355000 | None:intergenic | 15.0% |
| !! | AATTAAATATGTTCTACATT+AGG | - | chr8.4:1355167-1355186 | None:intergenic | 15.0% |
| !! | ATTGGAATCATAAATAAATT+AGG | - | chr8.4:1355016-1355035 | None:intergenic | 15.0% |
| !! | CAATCCTAATAATAAATATA+TGG | + | chr8.4:1355032-1355051 | MS.gene96284:intron | 15.0% |
| !! | CATATATTTATTATTAGGAT+TGG | - | chr8.4:1355034-1355053 | None:intergenic | 15.0% |
| !! | ACAAAAAATAAAACTGAAGT+TGG | - | chr8.4:1354792-1354811 | None:intergenic | 20.0% |
| !! | ATATGCTATTATAAATAGAG+AGG | - | chr8.4:1354954-1354973 | None:intergenic | 20.0% |
| !! | CAAAAAATAAAACTGAAGTT+GGG | - | chr8.4:1354791-1354810 | None:intergenic | 20.0% |
| !! | CAGTGATAAATTAATTTCTA+TGG | - | chr8.4:1355292-1355311 | None:intergenic | 20.0% |
| !! | TGAATGAATGAATATGAAAT+AGG | - | chr8.4:1354737-1354756 | None:intergenic | 20.0% |
| ! | AGAAAATTGAATTTGACAAG+TGG | + | chr8.4:1355484-1355503 | MS.gene96284:CDS | 25.0% |
| ! | GAAAATTGAATTTGACAAGT+GGG | + | chr8.4:1355485-1355504 | MS.gene96284:CDS | 25.0% |
| ! | GTCTTGAAAAATACTTCTAA+CGG | + | chr8.4:1355889-1355908 | MS.gene96284:CDS | 25.0% |
| ! | TAAAGAAATGAATTGCTATG+AGG | - | chr8.4:1354882-1354901 | None:intergenic | 25.0% |
| ! | TAAATATGTTCTACATTAGG+AGG | - | chr8.4:1355164-1355183 | None:intergenic | 25.0% |
| !! | AATTTTGTAGTAGCATTTCA+TGG | + | chr8.4:1354846-1354865 | MS.gene96284:intron | 25.0% |
| !! | ATAGTCTCTGATCTAATTTT+GGG | + | chr8.4:1355251-1355270 | MS.gene96284:intron | 25.0% |
| !! | GGTCTAATGATGATAATTTT+TGG | + | chr8.4:1355601-1355620 | MS.gene96284:CDS | 25.0% |
| !! | TATAGTCTCTGATCTAATTT+TGG | + | chr8.4:1355250-1355269 | MS.gene96284:intron | 25.0% |
| AATCAACATAGTATGAGAGT+AGG | - | chr8.4:1354918-1354937 | None:intergenic | 30.0% | |
| ACTGCAAATAAAGAGAGATA+AGG | - | chr8.4:1355765-1355784 | None:intergenic | 30.0% | |
| ATGCTACTACAAAATTATGC+AGG | - | chr8.4:1354842-1354861 | None:intergenic | 30.0% | |
| ATTTATAGTCTCAGATATGG+GGG | + | chr8.4:1355345-1355364 | MS.gene96284:intron | 30.0% | |
| CAAACAAGTTCAGTTAAGAA+AGG | - | chr8.4:1355110-1355129 | None:intergenic | 30.0% | |
| CATTTATAGTCTCAGATATG+GGG | + | chr8.4:1355344-1355363 | MS.gene96284:intron | 30.0% | |
| GCATTTATAGTCTCAGATAT+GGG | + | chr8.4:1355343-1355362 | MS.gene96284:intron | 30.0% | |
| TATAAGTGAATTCTGATTGC+AGG | + | chr8.4:1355422-1355441 | MS.gene96284:intron | 30.0% | |
| ! | CATATCTGAGACTATAAATG+CGG | - | chr8.4:1355344-1355363 | None:intergenic | 30.0% |
| ! | CTTTCTTAACTGAACTTGTT+TGG | + | chr8.4:1355108-1355127 | MS.gene96284:intron | 30.0% |
| ! | TAGTCTCTGATCTAATTTTG+GGG | + | chr8.4:1355252-1355271 | MS.gene96284:intron | 30.0% |
| AAAATTATGCAGGCAGTGAA+AGG | - | chr8.4:1354832-1354851 | None:intergenic | 35.0% | |
| AATTTGAGAAGTGAGTTCTG+AGG | + | chr8.4:1355389-1355408 | MS.gene96284:intron | 35.0% | |
| ACCTGATTAGGATTGAATAC+GGG | - | chr8.4:1354567-1354586 | None:intergenic | 35.0% | |
| CAGTATATCCTAGTTGCAAA+AGG | + | chr8.4:1355781-1355800 | MS.gene96284:intron | 35.0% | |
| CGCATTTATAGTCTCAGATA+TGG | + | chr8.4:1355342-1355361 | MS.gene96284:intron | 35.0% | |
| GACCTGATTAGGATTGAATA+CGG | - | chr8.4:1354568-1354587 | None:intergenic | 35.0% | |
| TGCAATTTACTGTCACACTT+TGG | + | chr8.4:1355078-1355097 | MS.gene96284:intron | 35.0% | |
| TTCAAAGAGCCATCAAAATC+AGG | - | chr8.4:1355922-1355941 | None:intergenic | 35.0% | |
| ! | ACTCTTCCGTTGATGAAAAA+TGG | + | chr8.4:1354626-1354645 | MS.gene96284:CDS | 35.0% |
| ! | ATTTGAGAAGTGAGTTCTGA+GGG | + | chr8.4:1355390-1355409 | MS.gene96284:intron | 35.0% |
| ! | TCAAATCACCTTTTGCAACT+AGG | - | chr8.4:1355792-1355811 | None:intergenic | 35.0% |
| !! | AAGAGAGCGTTGTAAGAAAA+TGG | + | chr8.4:1355971-1355990 | MS.gene96284:CDS | 35.0% |
| !! | AGAGAGCGTTGTAAGAAAAT+GGG | + | chr8.4:1355972-1355991 | MS.gene96284:CDS | 35.0% |
| !! | ATACAGCAATGGATTGATGA+TGG | - | chr8.4:1355824-1355843 | None:intergenic | 35.0% |
| !! | CAAGCTAGTCTTACTATACT+TGG | + | chr8.4:1355636-1355655 | MS.gene96284:CDS | 35.0% |
| !! | TTTTGATGGCTCTTTGAAGA+AGG | + | chr8.4:1355924-1355943 | MS.gene96284:CDS | 35.0% |
| !!! | TTTTGTTGTTGTCTGAGAAG+AGG | - | chr8.4:1354702-1354721 | None:intergenic | 35.0% |
| AACTGAGTTTGTGCTGTAAG+CGG | - | chr8.4:1354654-1354673 | None:intergenic | 40.0% | |
| AATCAAAAGACGAGAAGAGC+TGG | + | chr8.4:1355515-1355534 | MS.gene96284:CDS | 40.0% | |
| ATCAAAAGACGAGAAGAGCT+GGG | + | chr8.4:1355516-1355535 | MS.gene96284:CDS | 40.0% | |
| ATCCATTGCTGTATGCACTT+CGG | + | chr8.4:1355830-1355849 | MS.gene96284:CDS | 40.0% | |
| ATGGGAGCAATTGTAAACCT+AGG | + | chr8.4:1354535-1354554 | MS.gene96284:CDS | 40.0% | |
| CAGATATGGGGGAATTAAGT+GGG | + | chr8.4:1355356-1355375 | MS.gene96284:intron | 40.0% | |
| CTCAGACAACAACAAAAGAG+AGG | + | chr8.4:1354705-1354724 | MS.gene96284:CDS | 40.0% | |
| GACAACAACAAAAGAGAGGT+AGG | + | chr8.4:1354709-1354728 | MS.gene96284:intron | 40.0% | |
| TCAGATATGGGGGAATTAAG+TGG | + | chr8.4:1355355-1355374 | MS.gene96284:intron | 40.0% | |
| TCCCGTATTCAATCCTAATC+AGG | + | chr8.4:1354563-1354582 | MS.gene96284:CDS | 40.0% | |
| ! | CATTGGAAGGTGCATTAAGT+GGG | + | chr8.4:1355460-1355479 | MS.gene96284:CDS | 40.0% |
| ! | GGATCAAGCTAGAAAAGCAT+TGG | + | chr8.4:1355443-1355462 | MS.gene96284:intron | 40.0% |
| !! | CAAGCTAGAAAAGCATTGGA+AGG | + | chr8.4:1355447-1355466 | MS.gene96284:CDS | 40.0% |
| !! | GAGAGCGTTGTAAGAAAATG+GGG | + | chr8.4:1355973-1355992 | MS.gene96284:CDS | 40.0% |
| CTGCTTAGTCGTCGTCAATT+GGG | - | chr8.4:1354602-1354621 | None:intergenic | 45.0% | |
| GGAGCAATTGTAAACCTAGG+AGG | + | chr8.4:1354538-1354557 | MS.gene96284:CDS | 45.0% | |
| TCCATTGCTGTATGCACTTC+GGG | + | chr8.4:1355831-1355850 | MS.gene96284:CDS | 45.0% | |
| ! | GATGGCTCTTTGAAGAAGGA+AGG | + | chr8.4:1355928-1355947 | MS.gene96284:CDS | 45.0% |
| ! | GCATTGGAAGGTGCATTAAG+TGG | + | chr8.4:1355459-1355478 | MS.gene96284:CDS | 45.0% |
| ! | GGTGATCAGCCTGATTTTGA+TGG | + | chr8.4:1355910-1355929 | MS.gene96284:CDS | 45.0% |
| !! | GCGGCTCCATTTTTCATCAA+CGG | - | chr8.4:1354635-1354654 | None:intergenic | 45.0% |
| AAAAGACGAGAAGAGCTGGG+AGG | + | chr8.4:1355519-1355538 | MS.gene96284:CDS | 50.0% | |
| AACGATGGCGTGACCTGATT+AGG | - | chr8.4:1354579-1354598 | None:intergenic | 50.0% | |
| AGAGGCAGGTGAATCTGCTT+CGG | - | chr8.4:1354684-1354703 | None:intergenic | 50.0% | |
| CCATTGCTGTATGCACTTCG+GGG | + | chr8.4:1355832-1355851 | MS.gene96284:CDS | 50.0% | |
| GCTGCTTAGTCGTCGTCAAT+TGG | - | chr8.4:1354603-1354622 | None:intergenic | 50.0% | |
| GTTGTTGTCTGAGAAGAGGC+AGG | - | chr8.4:1354698-1354717 | None:intergenic | 50.0% | |
| TCGTCGTCAATTGGGAACGA+TGG | - | chr8.4:1354594-1354613 | None:intergenic | 50.0% | |
| TTGAATACGGGACTCCTCCT+AGG | - | chr8.4:1354555-1354574 | None:intergenic | 50.0% | |
| TTTGGGTGGGGTAGATGGTT+TGG | + | chr8.4:1355576-1355595 | MS.gene96284:CDS | 50.0% | |
| ! | CGGGGAGTGAGAAATGGATT+TGG | + | chr8.4:1355850-1355869 | MS.gene96284:CDS | 50.0% |
| !! | ATGGATTGATGATGGCAGCG+AGG | - | chr8.4:1355816-1355835 | None:intergenic | 50.0% |
| CCCCGAAGTGCATACAGCAA+TGG | - | chr8.4:1355835-1355854 | None:intergenic | 55.0% | |
| GCACTTCGGGGAGTGAGAAA+TGG | + | chr8.4:1355844-1355863 | MS.gene96284:CDS | 55.0% | |
| GCAGGTGAATCTGCTTCGGT+TGG | - | chr8.4:1354680-1354699 | None:intergenic | 55.0% | |
| !! | GTGCTGGAGGAGGTTGGTTT+GGG | + | chr8.4:1355559-1355578 | MS.gene96284:CDS | 55.0% |
| !! | GTTGGTTTGGGTGGGGTAGA+TGG | + | chr8.4:1355571-1355590 | MS.gene96284:CDS | 55.0% |
| !! | TGGAGGAGGTTGGTTTGGGT+GGG | + | chr8.4:1355563-1355582 | MS.gene96284:CDS | 55.0% |
| AGACGAGAAGAGCTGGGAGG+CGG | + | chr8.4:1355522-1355541 | MS.gene96284:CDS | 60.0% | |
| ! | GGTGCTGGAGGAGGTTGGTT+TGG | + | chr8.4:1355558-1355577 | MS.gene96284:CDS | 60.0% |
| ! | GGTGGGGTAGATGGTTTGGC+TGG | + | chr8.4:1355580-1355599 | MS.gene96284:CDS | 60.0% |
| !! | CTGGAGGAGGTTGGTTTGGG+TGG | + | chr8.4:1355562-1355581 | MS.gene96284:CDS | 60.0% |
| !! | GGAGGAGGTTGGTTTGGGTG+GGG | + | chr8.4:1355564-1355583 | MS.gene96284:CDS | 60.0% |
| CGAGAAGAGCTGGGAGGCGG+AGG | + | chr8.4:1355525-1355544 | MS.gene96284:CDS | 70.0% | |
| CTGGGAGGCGGAGGTGACAG+CGG | + | chr8.4:1355534-1355553 | MS.gene96284:CDS | 70.0% | |
| GGAGGCGGAGGTGACAGCGG+CGG | + | chr8.4:1355537-1355556 | MS.gene96284:CDS | 75.0% | |
| GGAGGTGACAGCGGCGGTGC+TGG | + | chr8.4:1355543-1355562 | MS.gene96284:CDS | 75.0% | |
| ! | GACAGCGGCGGTGCTGGAGG+AGG | + | chr8.4:1355549-1355568 | MS.gene96284:CDS | 75.0% |
| ! | GCGGCGGTGCTGGAGGAGGT+TGG | + | chr8.4:1355553-1355572 | MS.gene96284:CDS | 75.0% |
| ! | GGTGACAGCGGCGGTGCTGG+AGG | + | chr8.4:1355546-1355565 | MS.gene96284:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 1354526 | 1356005 | 1354526 | ID=MS.gene96284 |
| chr8.4 | mRNA | 1354526 | 1356005 | 1354526 | ID=MS.gene96284.t1;Parent=MS.gene96284 |
| chr8.4 | exon | 1354526 | 1354726 | 1354526 | ID=MS.gene96284.t1.exon1;Parent=MS.gene96284.t1 |
| chr8.4 | CDS | 1354526 | 1354726 | 1354526 | ID=cds.MS.gene96284.t1;Parent=MS.gene96284.t1 |
| chr8.4 | exon | 1355444 | 1355671 | 1355444 | ID=MS.gene96284.t1.exon2;Parent=MS.gene96284.t1 |
| chr8.4 | CDS | 1355444 | 1355671 | 1355444 | ID=cds.MS.gene96284.t1;Parent=MS.gene96284.t1 |
| chr8.4 | exon | 1355784 | 1356005 | 1355784 | ID=MS.gene96284.t1.exon3;Parent=MS.gene96284.t1 |
| chr8.4 | CDS | 1355784 | 1356005 | 1355784 | ID=cds.MS.gene96284.t1;Parent=MS.gene96284.t1 |
| Gene Sequence |
| Protein sequence |
